Citrus Sinensis ID: 022407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Secondary Structure (PSIPRED)
ccccccEEEEEccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHccEEEEcccccHHHHHHHHHHHccccccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
MEEKMKVMGvvgsgqmgsgiaqlgvmdgldvwlvdtdpdALVRATKSISSSIQKFVSkgqlsqamgtdaprrlrctsnlkdlhsADIIVEAIVESEDVKKKLFSELDKITKASAIlasntssisitrlasatsrpcqvigmhfmnppplMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGvatkedidagmklgtnqpmgplqladfIGLDVCLSIMKVLhtglgdskyapcpllVQYVDagrlgkkrgigvfdyrrvpesvkpnarl
Flexible Loop (DISEMBL)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKsisssiqkfvskgqlsqamgtdaprRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKasailasntssisiTRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALaerfgktvvcSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTglgdskyaPCPLLVQYVDAGRLGKKRGigvfdyrrvpesvkpnarl
Low Complexity Region (SEG)
MEEkmkvmgvvgsgqmgsgIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Disordered region (IsUnstruct)
***************MGSGIAQLGVMDGLDVWLVDTDPDALVRAT***************************LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR***********
Disordered Region (DISOPRED)
***KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVS*****QAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR***********
Disordered Region (DISEMBL)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Disordered Region (DISPRO)
**EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q45223	293	3-hydroxybutyryl-CoA dehy	yes	no	0.959	0.972	0.547	1e-86
P45856	287	Probable 3-hydroxybutyryl	yes	no	0.952	0.986	0.522	4e-80
Q9RVG1	278	Probable 3-hydroxybutyryl	yes	no	0.915	0.978	0.544	2e-79
P77851	281	3-hydroxybutyryl-CoA dehy	yes	no	0.946	1.0	0.512	3e-76
P52041	282	3-hydroxybutyryl-CoA dehy	yes	no	0.949	1.0	0.517	5e-75
P45364	281	3-hydroxybutyryl-CoA dehy	yes	no	0.939	0.992	0.480	5e-67
P41938	309	Probable 3-hydroxyacyl-Co	yes	no	0.949	0.912	0.380	3e-53
O53753	286	3-hydroxybutyryl-CoA dehy	yes	no	0.952	0.989	0.397	1e-52
Q61425	314	Hydroxyacyl-coenzyme A de	yes	no	0.946	0.894	0.406	3e-52
Q16836	314	Hydroxyacyl-coenzyme A de	yes	no	0.942	0.891	0.404	1e-51

>sp|Q45223|HBD_BRAJA 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum (strain USDA 110) GN=hbdA PE=3 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/285 (54%), Positives = 199/285 (69%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M   +K +GV+G+GQMG+GIA +  + G DV L D   D L     +I+ ++ + VSK  
Sbjct: 1   MAAVIKKVGVIGAGQMGNGIAHVAALAGFDVVLNDVSADRLKSGMATINGNLARQVSKKV 60

Query: 61  LSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           +++   T A  R+     L DL   D+++E  VE E+VK+K+F EL  + K  AI+AS+T
Sbjct: 61  VTEEAKTKALSRIVAAEKLDDLADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDT 120

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SSISITRLA+AT RP + IG+HFMNP PLM+LVE+IRG  T D TF A+K    + GK V
Sbjct: 121 SSISITRLAAATDRPERFIGIHFMNPVPLMELVELIRGIATDDATFEASKEFVAKLGKQV 180

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
             S+D+  FIVNRIL+PMINEA +TLY GV   E IDA MKLG + PMGPL+LADFIGLD
Sbjct: 181 AVSEDFPAFIVNRILLPMINEAIYTLYEGVGNVEAIDAAMKLGAHHPMGPLELADFIGLD 240

Query: 241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            CLSIM+VLH GL DSKY PCPLLV+YV+AG LG+K   G +DYR
Sbjct: 241 TCLSIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRKTQRGFYDYR 285

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5EC: 7

>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgB PE=2 SV=1

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/283 (52%), Positives = 189/283 (66%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K + V G+GQMGSGIAQ     G  V + D +P+A     K +   + +   KG+ ++
Sbjct: 2   EIKQIMVAGAGQMGSGIAQTAADAGFYVRMYDVNPEAAEAGLKRLKKQLARDAEKGKRTE 61

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                   R+  +  L++   ADI++EAI E+   K ++F  LD+I     ILASNTSS+
Sbjct: 62  TEVKSVINRISISQTLEEAEHADIVIEAIAENMAAKTEMFKTLDRICPPHTILASNTSSL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            IT +A+ T+RP +VIGMHFMNP P+MKLVEVIRG  TS+ET     ALAE+ GKT V  
Sbjct: 122 PITEIAAVTNRPQRVIGMHFMNPVPVMKLVEVIRGLATSEETALDVMALAEKMGKTAVEV 181

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            D+ GF+ NR+L+PMINEA + +Y GVA  E ID  MKLG N PMGPL LADFIGLD CL
Sbjct: 182 NDFPGFVSNRVLLPMINEAIYCVYEGVAKPEAIDEVMKLGMNHPMGPLALADFIGLDTCL 241

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           SIM+VLH+GLGDSKY PCPLL +YV AG LGKK G G +DY  
Sbjct: 242 SIMEVLHSGLGDSKYRPCPLLRKYVKAGWLGKKSGRGFYDYEE 284

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hbd PE=3 SV=1

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/281 (54%), Positives = 185/281 (65%), Gaps = 9/281 (3%)

Query: 8   MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGT 67
            GV+G+GQMG GIAQ+    G DV + D   + L R    I  S+ K   KG+L     T
Sbjct: 3   FGVIGAGQMGGGIAQVAAQSGFDVVVHDQKQEFLDRGKGVIEKSLGKLHEKGKL-----T 57

Query: 68  DAPR----RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           DAP     R+  T++L+D    D++VEAIVE++ +K  LF +L +I K   ILASNTSSI
Sbjct: 58  DAPETVLGRIHFTTDLQDFADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSI 117

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            IT LA+A+ RP Q IGMHFMNP PLM+LVEVIRG  TSDET R     AE+ GKT +  
Sbjct: 118 PITALATASGRPAQFIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSC 177

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            D+ GF+ NRILMPM+NEA   +  GVA  E ID  MKLG N PMGPL LADFIGLD CL
Sbjct: 178 NDFPGFVSNRILMPMLNEAIQCVMEGVAEPEAIDGIMKLGMNHPMGPLTLADFIGLDTCL 237

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +IM+VLH GLGD KY P PLL + V AG LG+K G G + Y
Sbjct: 238 AIMEVLHQGLGDDKYRPSPLLRKMVQAGLLGRKSGEGFYKY 278

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=hbd PE=3 SV=2

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/281 (51%), Positives = 193/281 (68%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           M+ + V+G+G MGSGIAQ+   +G +V L D D   + +   +I  ++Q+ V KG+++  
Sbjct: 1   MQKICVIGAGTMGSGIAQVFAQNGFEVILRDIDMKFVEKGFGTIEKNLQRNVDKGKITAD 60

Query: 65  MGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
              +   R+R T+NL+D   AD +VEA +E+ D+KK++F ELD+I K   ILASNTSS+S
Sbjct: 61  EKNEILSRIRGTTNLEDAKEADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLS 120

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT +ASAT RP +VIGMHF NP P+MKLVEVI+G  TS++TF   + LA +  KT +  +
Sbjct: 121 ITEIASATKRPEKVIGMHFFNPVPVMKLVEVIKGLKTSEQTFNVVRELALKVDKTPIEVK 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA   L  GVAT EDID  MKLG N P+GPL L+D IG DV L+
Sbjct: 181 EAPGFVVNRILIPMINEAIGILADGVATAEDIDEAMKLGANHPIGPLALSDLIGNDVVLA 240

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           IM VL+   GDSKY P PLL + V  G LG+K G G F+Y+
Sbjct: 241 IMNVLYEEYGDSKYRPHPLLKKMVRGGLLGRKTGKGFFEYK 281

Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) (taxid: 580327)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=hbd PE=3 SV=2

 Score =  281 bits (718), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/282 (51%), Positives = 188/282 (66%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           MK + V+G+G MGSGIAQ     G +V L D   + + R    I+ ++ K V KG++ +A
Sbjct: 1   MKKVCVIGAGTMGSGIAQAFAAKGFEVVLRDIKDEFVDRGLDFINKNLSKLVKKGKIEEA 60

Query: 65  MGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
              +   R+  T +L      D+++EA VE  D+KK++F++LD I K   ILASNTSS+S
Sbjct: 61  TKVEILTRISGTVDLNMAADCDLVIEAAVERMDIKKQIFADLDNICKPETILASNTSSLS 120

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT +ASAT RP +VIGMHF NP P+MKLVEVIRG  TS ETF A K  +   GK  V   
Sbjct: 121 ITEVASATKRPDKVIGMHFFNPAPVMKLVEVIRGIATSQETFDAVKETSIAIGKDPVEVA 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA   L  G+A+ EDID  MKLG N PMGPL+L DFIGLD+CL+
Sbjct: 181 EAPGFVVNRILIPMINEAVGILAEGIASVEDIDKAMKLGANHPMGPLELGDFIGLDICLA 240

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           IM VL++  GDSKY P  LL +YV AG LG+K G G +DY +
Sbjct: 241 IMDVLYSETGDSKYRPHTLLKKYVRAGWLGRKSGKGFYDYSK 282

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P45364|HBD_CLODI 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium difficile GN=hbd PE=3 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 176/279 (63%)

Query: 8   MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGT 67
           + V+GSG MGSGI Q     G DV L      A+ +    +  ++ K V+KG+  +A   
Sbjct: 3   LAVIGSGTMGSGIVQTFASCGHDVCLKSRTQGAIDKCLALLDKNLTKLVTKGKWMKATKA 62

Query: 68  DAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR 127
           +    +  T+N +DL   D+I+EA VE  ++KK +F  LD++ K   ILA+NTSS+SIT 
Sbjct: 63  EILSHVSSTTNYEDLKDMDLIIEASVEDMNIKKDVFKLLDELCKEDTILATNTSSLSITE 122

Query: 128 LASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYA 187
           +AS+T RP +VIGMHF NP P+MKLVEVI G  TS  TF     L++   K  V   +  
Sbjct: 123 IASSTKRPDKVIGMHFFNPVPMMKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVSESP 182

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNRIL+PMINEA      GVA+KE+ID  MKLG N PMGPL L D IGLDV L+IM 
Sbjct: 183 GFVVNRILIPMINEAVGIYADGVASKEEIDEAMKLGANHPMGPLALGDLIGLDVVLAIMN 242

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
           VL+T  GD+KY   PLL + V A +LG+K  IG +DY +
Sbjct: 243 VLYTEFGDTKYTAHPLLAKMVRANQLGRKTKIGFYDYNK 281

Clostridium difficile (taxid: 1496)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|P41938|HCDH2_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis elegans GN=B0272.3 PE=1 SV=1

 Score =  209 bits (531), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/289 (38%), Positives = 172/289 (59%), Gaps = 7/289 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           K+  + ++G+G MGSGIAQ+     L+V +VD++  AL +A + I++S+++   K     
Sbjct: 21  KINNVTIIGAGLMGSGIAQVSANAKLNVTVVDSNQSALEKAQQGIANSLKRVAKKKHADD 80

Query: 64  AMGTDAP-----RRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117
           A    A       R++ ++N+ D +  AD+++EAIVE+ D+K+KLF+E++   K + ++ 
Sbjct: 81  AAAQTALVSSVLDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLIT 140

Query: 118 SNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG 177
           +NTSS+ +  +        +  G+HF NP P+MKL+EV+R  +TSD TF       +  G
Sbjct: 141 TNTSSLRLADIGLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYGKTVG 200

Query: 178 KTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237
           KT V  +D  GFIVNR+L+P + EA      G A+ EDID  MKLG   PMGP +L+D++
Sbjct: 201 KTTVACKDTPGFIVNRLLVPYMFEALRLYERGDASMEDIDVAMKLGAGYPMGPFELSDYV 260

Query: 238 GLDVCLSIMKVLHTGLGDS-KYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           GLD C  IM   H    +   + P PLL   VD+G+ G+K G G + Y+
Sbjct: 261 GLDTCKFIMDGWHAQYPEEVAFTPSPLLNSLVDSGKNGRKSGEGFYKYK 309

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O53753|FADB2_MYCTU 3-hydroxybutyryl-CoA dehydrogenase OS=Mycobacterium tuberculosis GN=fadB2 PE=1 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 180/287 (62%), Gaps = 4/287 (1%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS-ISSSIQKFVSKG 59
           M + ++ +GVVG+GQMGSGIA++    G++V + +   +AL+ A ++ I  S+++ VS G
Sbjct: 1   MSDAIQRVGVVGAGQMGSGIAEVSARAGVEVTVFEP-AEALITAGRNRIVKSLERAVSAG 59

Query: 60  QLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILAS 118
           ++++     A   L  T++L DL    +++EA+VE E VK ++F+ELD++ T   A+LAS
Sbjct: 60  KVTERERDRALGLLTFTTDLNDLSDRQLVIEAVVEDEAVKSEIFAELDRVVTDPDAVLAS 119

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER-FG 177
           NTSSI I ++A+AT +P +V+G+HF NP P++ LVE++R   T +     T+  A    G
Sbjct: 120 NTSSIPIMKVAAATKQPQRVLGLHFFNPVPVLPLVELVRTLVTDEAAAARTEEFASTVLG 179

Query: 178 KTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237
           K VV   D +GF+VN +L+P +  A   +  G AT ED+D  +  G + PMGPL+L+D +
Sbjct: 180 KQVVRCSDRSGFVVNALLVPYLLSAIRMVEAGFATVEDVDKAVVAGLSHPMGPLRLSDLV 239

Query: 238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           GLD    I   +     +  Y P PLL++ V+AG+LGKK G G + Y
Sbjct: 240 GLDTLKLIADKMFEEFKEPHYGPPPLLLRMVEAGQLGKKSGRGFYTY 286

Catalyzes the NAD-dependent dehydration of beta-hydroxybutyryl-CoA to acetoacetyl-CoA in vitro at pH 10. Also catalyzes the reverse reaction albeit in a lower pH range of 5.5-6.5. The reverse reaction is able to use NADPH as well as NADH.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus GN=Hadh PE=1 SV=2

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 161/288 (55%), Gaps = 7/288 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S+++   K      
Sbjct: 27  IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENP 86

Query: 65  MGTD--APRRLRCTSNLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118
              D    + L C S   D    +HS D++VEAIVE+  +K +LF  LDK      I AS
Sbjct: 87  KAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAEHTIFAS 146

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK 178
           NTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +     +  GK
Sbjct: 147 NTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGK 206

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
             V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++G
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLIEAVRLHERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 266

Query: 239 LDVCLSIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           LD    I+   H    ++  + P P +   V   +LGKK G G + Y+
Sbjct: 267 LDTTKFILDGWHEMEPENPLFQPSPSMNNLVAQKKLGKKTGEGFYKYK 314

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 166/289 (57%), Gaps = 9/289 (3%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K V+K + ++ 
Sbjct: 27  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRK-VAKKKFAEN 85

Query: 65  MGTD---APRRLRCTSNLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117
           +        + L   +   D    +HS D++VEAIVE+  VK +LF  LDK      I A
Sbjct: 86  LKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA 145

Query: 118 SNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG 177
           SNTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  G
Sbjct: 146 SNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG 205

Query: 178 KTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237
           K  V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++
Sbjct: 206 KHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 265

Query: 238 GLDVCLSIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           GLD    I+   H    ++  + P P L + V   + GKK G G + Y+
Sbjct: 266 GLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 314

Plays an essential role in the mitochondrial beta-oxidation of short chain fatty acids. Exerts it highest activity toward 3-hydroxybutyryl-CoA.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
225461498	296	PREDICTED: 3-hydroxybutyryl-CoA dehydrog	0.989	0.993	0.785	1e-137
224128091	295	predicted protein [Populus trichocarpa]	0.986	0.993	0.795	1e-136
147838328	301	hypothetical protein VITISV_020497 [Viti	0.956	0.943	0.802	1e-135
297830084	294	hypothetical protein ARALYDRAFT_897803 [	0.983	0.993	0.792	1e-134
255574666	296	3-hydroxyacyl-CoA dehyrogenase, putative	0.989	0.993	0.785	1e-134
15232545	294	3-hydroxybutyryl-CoA dehydrogenase [Arab	0.976	0.986	0.789	1e-133
312283461	297	unnamed protein product [Thellungiella h	0.962	0.962	0.804	1e-132
449457019	296	PREDICTED: 3-hydroxybutyryl-CoA dehydrog	0.989	0.993	0.751	1e-129
351722947	319	peroxisomal 3-hydroxyacyl-CoA dehydrogen	0.989	0.921	0.744	1e-126
195648550	299	3-hydroxybutyryl-CoA dehydrogenase [Zea	0.989	0.983	0.710	1e-124

>gi|225461498|ref|XP_002285093.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Vitis vinifera] gi|302142978|emb|CBI20273.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 265/294 (90%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +++ +GVVG GQMGSGIAQL  + G+DVWL DTD +AL RATKSIS+SIQ+FVSKGQLSQ
Sbjct: 3   EVRSIGVVGGGQMGSGIAQLAAVHGVDVWLHDTDAEALTRATKSISTSIQRFVSKGQLSQ 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            + T A +RLRCTSNL++L SAD+I+EAIVESED KKKLFSELDK+ K SAILASNTSSI
Sbjct: 63  EVATGALQRLRCTSNLEELCSADVIIEAIVESEDAKKKLFSELDKLAKGSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLA ATSRPCQVIGMHFMNPPP+MKLVE++RGADTS+ETF  TKALAERFGKTV+CS
Sbjct: 123 SITRLAFATSRPCQVIGMHFMNPPPIMKLVEIVRGADTSEETFNLTKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFI+NR+LMPMINEAFFTLYTGVATK+DID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIINRVLMPMINEAFFTLYTGVATKKDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH GLGDSKY PCPLL QYVDAGRLG+KRGIGV++YR+V  +   ++R+
Sbjct: 243 SIMKVLHAGLGDSKYVPCPLLQQYVDAGRLGRKRGIGVYNYRKVTGATNLSSRI 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128091|ref|XP_002329079.1| predicted protein [Populus trichocarpa] gi|222869748|gb|EEF06879.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/294 (79%), Positives = 263/294 (89%), Gaps = 1/294 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVGSGQMGSGIAQL  + GLDVWL+DTDP AL RATKSI+S+I + +SKGQLSQ
Sbjct: 3   EIKAVGVVGSGQMGSGIAQLAAVHGLDVWLLDTDPAALSRATKSITSNIHRLISKGQLSQ 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A G DA   LRC+SNL++L  ADI++EAIVESED KK LF ELD+I K+SAILASNTSSI
Sbjct: 63  AAGNDALGHLRCSSNLEELRMADIVIEAIVESEDAKKTLFLELDRIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASATSRP QVIGMHFMNPPP+MKLVE++RGADTSD TF ATKALAERFGKTV+CS
Sbjct: 123 SITRLASATSRPRQVIGMHFMNPPPIMKLVEIVRGADTSDNTFYATKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QD++GF+VNRILMPMINEAF+ LYTGVATKEDID GMKLGTN PMGPLQLADFIGLDVCL
Sbjct: 183 QDFSGFVVNRILMPMINEAFYALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVL TGLGD+KYAPCPLLVQ+VDAGRLG+KRGIGV+DY R  E VK +ARL
Sbjct: 243 SIMKVLQTGLGDNKYAPCPLLVQFVDAGRLGRKRGIGVYDY-RAAEQVKRSARL 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838328|emb|CAN67802.1| hypothetical protein VITISV_020497 [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/284 (80%), Positives = 258/284 (90%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           + + +GVVG GQMGSGIAQL  + G+BVWL DTD +AL RATKSIS+SIQ+FVSKGQLSQ
Sbjct: 3   EXRSIGVVGGGQMGSGIAQLAAVHGVBVWLHDTDAEALTRATKSISTSIQRFVSKGQLSQ 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            + T A +RLRCTSNL++L SAD+I+EAIVESED KKKLFSELDK+ K SAILASNTSSI
Sbjct: 63  EVATGALQRLRCTSNLEELCSADVIIEAIVESEDAKKKLFSELDKLAKGSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLA ATSRP QVIGMHFMNPPP+MKLVE++RGADTS+ETF  TKALAERFGKTV+CS
Sbjct: 123 SITRLAXATSRPXQVIGMHFMNPPPIMKLVEIVRGADTSEETFNLTKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFI+NRILMPMINEAFFTLYTGVATK+DID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIINRILMPMINEAFFTLYTGVATKKDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287
           SIMKVLH GLGDSKY PCPLL QYVDAGRLG+KRGIGV++YR++
Sbjct: 243 SIMKVLHAGLGDSKYVPCPLLQQYVDAGRLGRKRGIGVYNYRKL 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830084|ref|XP_002882924.1| hypothetical protein ARALYDRAFT_897803 [Arabidopsis lyrata subsp. lyrata] gi|297328764|gb|EFH59183.1| hypothetical protein ARALYDRAFT_897803 [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/294 (79%), Positives = 260/294 (88%), Gaps = 2/294 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVG+GQMGSGIAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+
Sbjct: 3   EMKCVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            +G DA  RLR TSNL+DL SADIIVEAIVESED+KKKLF +LD I K+ AILASNTSSI
Sbjct: 63  EIGDDAMHRLRVTSNLEDLSSADIIVEAIVESEDIKKKLFKDLDGIAKSCAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTS+ETF ATKALAERFGKT VCS
Sbjct: 123 SITRLASATKRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFIATKALAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGFIVNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFIVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRG+GV+DYR+  +  KP+ RL
Sbjct: 243 SVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGRKRGVGVYDYRKATQ--KPSPRL 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574666|ref|XP_002528242.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223532328|gb|EEF34127.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/294 (78%), Positives = 261/294 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVGSGQMGSGIAQL  + G+DVWL+DTDP AL RA+KSIS +I + +SKG LSQ
Sbjct: 3   EMKRIGVVGSGQMGSGIAQLAAVHGVDVWLLDTDPSALSRASKSISDNILRLISKGHLSQ 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A+G +A   L CTSN ++L +ADI+VEAIVESEDVKKKLF ELD+I K+SAILASNTSSI
Sbjct: 63  AVGDNALGCLHCTSNPEELCTADIVVEAIVESEDVKKKLFLELDRIVKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASATSR  QVIGMHFMNPPP+MKLVE+IRGADTSDETF ATKALAERFGKTV+CS
Sbjct: 123 SITRLASATSRASQVIGMHFMNPPPVMKLVEIIRGADTSDETFYATKALAERFGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QD++GFIVNRILMPMINEAF  LYTGVA+KEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDFSGFIVNRILMPMINEAFHALYTGVASKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH GLGDSKY PCPLLVQYVDAGRLG+K+GIGV++YR+  E  KP+ RL
Sbjct: 243 SIMKVLHAGLGDSKYLPCPLLVQYVDAGRLGRKQGIGVYNYRKTTEQAKPSGRL 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232545|ref|NP_188147.1| 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|9294256|dbj|BAB02158.1| 3-hydroxybutyryl-CoA dehydrogenase-like protein [Arabidopsis thaliana] gi|23306408|gb|AAN17431.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|24899761|gb|AAN65095.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana] gi|332642120|gb|AEE75641.1| 3-hydroxybutyryl-CoA dehydrogenase [Arabidopsis thaliana]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/290 (78%), Positives = 256/290 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           +MK +GVVG+GQMGSGIAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+
Sbjct: 3   EMKSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            +G DA  RLR TSNL+DL SADIIVEAIVESED+KKKLF +LD I K+SAILASNTSSI
Sbjct: 63  EVGDDAMHRLRLTSNLEDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTS+ETF ATK LAERFGKT VCS
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGF+VNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRG+GV+DYR   + + P
Sbjct: 243 SVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGRKRGVGVYDYREATQKLSP 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283461|dbj|BAJ34596.1| unnamed protein product [Thellungiella halophila]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/286 (80%), Positives = 254/286 (88%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVG+GQMGSGIAQL   +GLDVWL+D D DAL RAT +ISSS+++FVSKG +++
Sbjct: 3   EIKCVGVVGAGQMGSGIAQLAATNGLDVWLMDADRDALSRATAAISSSVKRFVSKGLIAK 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
             G DA  RLR TSNL+DL SADIIVEAIVESEDVKKKLF +LD I K+SAILASNTSSI
Sbjct: 63  EAGDDAMHRLRLTSNLQDLCSADIIVEAIVESEDVKKKLFKDLDGIAKSSAILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SITRLASAT RP QVIGMHFMNPPP+MKLVE+IRG DTSDETF ATKALAERFGKT VCS
Sbjct: 123 SITRLASATQRPSQVIGMHFMNPPPIMKLVEIIRGTDTSDETFIATKALAERFGKTTVCS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDYAGFIVNRILMPMINEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCL
Sbjct: 183 QDYAGFIVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289
           S+MKVLH GLGDSKYAPCPLLVQYVDAGRLG+KRGIGV+DYR   +
Sbjct: 243 SVMKVLHQGLGDSKYAPCPLLVQYVDAGRLGRKRGIGVYDYRNATQ 288

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457019|ref|XP_004146246.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase-like [Cucumis sativus] gi|449495515|ref|XP_004159864.1| PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase-like [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/294 (75%), Positives = 258/294 (87%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVG GQMGSGIAQL    G  VWL+D+D  AL +AT SISSSIQ+ VS+  LS+
Sbjct: 3   EIKAIGVVGGGQMGSGIAQLAATYGHQVWLIDSDSAALAKATDSISSSIQRLVSRNLLSR 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
            +G +A +RL+ +++LK+LHSAD+I+EAI+ESEDVK+KLF ELDKI K S+ILASNTSSI
Sbjct: 63  EIGANALQRLKFSTDLKELHSADVIIEAILESEDVKRKLFVELDKIAKRSSILASNTSSI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            ITRLASAT+RP QVIGMHFMNPPP+MKLVE++RGADTS+ETF A K LAER GKTV+CS
Sbjct: 123 PITRLASATTRPEQVIGMHFMNPPPVMKLVEIVRGADTSNETFDAIKILAERLGKTVICS 182

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY+GFIVNRILMPMINEAFF LYTGVATKEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 183 QDYSGFIVNRILMPMINEAFFALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 242

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIMKVLH+GLGD+KYAPCPLLVQYVDAGRLG+KR IGV+DYR++PE  K  +RL
Sbjct: 243 SIMKVLHSGLGDNKYAPCPLLVQYVDAGRLGRKRRIGVYDYRKLPEPDKSKSRL 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722947|ref|NP_001234958.1| peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max] gi|167963343|dbj|BAG09365.1| peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/294 (74%), Positives = 258/294 (87%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K +GVVGSGQMGSGIAQ+  M G+DVWL D DP AL +A+ SISSSI +FVSK  +SQ
Sbjct: 26  EVKRIGVVGSGQMGSGIAQVAAMHGIDVWLHDLDPQALSKASSSISSSINRFVSKNHISQ 85

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
             G DA +RLR T++L+DL  AD+I+EAIVESEDVKK LF++LD+I K+SAILASNTSSI
Sbjct: 86  VAGADALKRLRLTTDLEDLQLADLIIEAIVESEDVKKSLFAQLDRIAKSSAILASNTSSI 145

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S+TRLA++TSRP QVIGMHFMNPPP+MKL+E++RGADTS+ETF ATKAL+ER GK V+ S
Sbjct: 146 SVTRLATSTSRPRQVIGMHFMNPPPVMKLIEIVRGADTSEETFVATKALSERLGKVVITS 205

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            DY+GFIVNRILMPMINEAFF LYTGVATKEDID GMKLGTN PMGPL+LADFIGLDVCL
Sbjct: 206 HDYSGFIVNRILMPMINEAFFALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCL 265

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           SIM+VLH GLGD+KYAPCPLLVQYVDAGRLG+KRGIGV++Y + P S K ++RL
Sbjct: 266 SIMRVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYEYSKDPRSTKSSSRL 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195648550|gb|ACG43743.1| 3-hydroxybutyryl-CoA dehydrogenase [Zea mays]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/294 (71%), Positives = 250/294 (85%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++  +GV+G+GQMGSGIAQL    G  V L+D DP AL RA  SIS+S+++  +KGQLSQ
Sbjct: 6   EIAAVGVIGAGQMGSGIAQLAAGGGCAVLLLDADPTALSRAVVSISASLRRLAAKGQLSQ 65

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A   D+ +R+RC S ++DL  AD+++EA+VE+EDVKKKLF ELDK+TK SAILASNTSSI
Sbjct: 66  AACEDSIKRIRCVSAVQDLRDADLVIEAVVENEDVKKKLFVELDKVTKPSAILASNTSSI 125

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S+TRLASAT RP QVIGMHF NPPP+MKL+EVIRGADTSDE F A ++ +ER GK+V+CS
Sbjct: 126 SVTRLASATKRPSQVIGMHFFNPPPVMKLIEVIRGADTSDEVFAAVRSFSERLGKSVICS 185

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           QDY GFIVNRILMPMINEAF+ LYTGVATKEDIDAGMKLGTN PMGPLQLADFIGLDVCL
Sbjct: 186 QDYPGFIVNRILMPMINEAFWALYTGVATKEDIDAGMKLGTNHPMGPLQLADFIGLDVCL 245

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
           S+++VLH+GLGD+KY+PCPLLVQYVDAGRLGKKRG+GV+ Y   P SV+P + L
Sbjct: 246 SVLRVLHSGLGDNKYSPCPLLVQYVDAGRLGKKRGVGVYSYGHRPSSVRPKSSL 299

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2087120	294	AT3G15290 [Arabidopsis thalian	0.922	0.931	0.791	4.1e-113
TIGR_CMR|BA_5588	283	BA_5588 "3-hydroxyacyl-CoA deh	0.892	0.936	0.528	1.9e-67
TIGR_CMR|SPO_0717	291	SPO_0717 "3-hydroxybutyryl-CoA	0.905	0.924	0.514	5.1e-67
TIGR_CMR|CHY_1603	283	CHY_1603 "3-hydroxybutyryl-CoA	0.892	0.936	0.498	5.2e-65
DICTYBASE|DDB_G0280465	299	DDB_G0280465 "3-hydroxyacyl-Co	0.888	0.882	0.522	3.7e-64
TIGR_CMR|CHY_1292	284	CHY_1292 "3-hydroxybutyryl-CoA	0.892	0.933	0.490	1.6e-63
UNIPROTKB|Q4KER0	283	PFL_2166 "3-hydroxybutyryl-CoA	0.892	0.936	0.460	3.6e-57
ASPGD|ASPL0000065284	319	hadA [Emericella nidulans (tax	0.855	0.796	0.486	5.3e-56
UNIPROTKB|G4N0T7	319	MGG_16630 "3-hydroxybutyryl-Co	0.851	0.793	0.492	4.8e-55
UNIPROTKB|F1N338	314	HADH "Uncharacterized protein"	0.888	0.840	0.421	2.3e-46

TAIR|locus:2087120 AT3G15290 [Arabidopsis thaliana (taxid:3702)]

 Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
 Identities = 217/274 (79%), Positives = 241/274 (87%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IAQL    GLDVWL+D D DAL RAT +ISSS+++FVSKG +S+ +G DA  RLR TSNL
Sbjct:    19 IAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEVGDDAMHRLRLTSNL 78

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             +DL SADIIVEAIVESED+KKKLF +LD I K+SAILASNTSSISITRLASAT RP QVI
Sbjct:    79 EDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSISITRLASATRRPSQVI 138

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNPPP+MKLVE+IRGADTS+ETF ATK LAERFGKT VCSQDYAGF+VNRILMPMI
Sbjct:   139 GMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCSQDYAGFVVNRILMPMI 198

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEAF TLYTGVATKEDID+GMK GTN PMGPL+LAD IGLDVCLS+MKVLH GLGDSKYA
Sbjct:   199 NEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCLSVMKVLHEGLGDSKYA 258

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
             PCPLLVQYVDAGRLG+KRG+GV+DYR   + + P
Sbjct:   259 PCPLLVQYVDAGRLGRKRGVGVYDYREATQKLSP 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TIGR_CMR|BA_5588 BA_5588 "3-hydroxyacyl-CoA dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 140/265 (52%), Positives = 179/265 (67%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IAQ+  M G DV + D   + L R     + ++ + V KG++ +        RL  T +L
Sbjct:    18 IAQVCAMAGYDVKVQDLKQEQLDRGLAITTKNLARQVEKGRMKEEEKEATLNRLTVTLDL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
               +  AD+I+EA VE  D+KKK+F+ LD+I    AILA+NTSS+ IT +A+ T RP +VI
Sbjct:    78 DCVKEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITEIAAVTKRPEKVI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNP P+MKLVE+IRG  T D  +   + + ++ GK  V   D+ GF+ NRIL+PMI
Sbjct:   138 GMHFMNPVPVMKLVEIIRGLATDDAVYETIEDITKKIGKVPVEVNDFPGFVSNRILLPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA +TLY GVATKE ID  MKLG N PMGPL LADFIGLD CL IM+VLH GLGDSKY 
Sbjct:   198 NEAIYTLYEGVATKEAIDEVMKLGMNHPMGPLTLADFIGLDTCLYIMEVLHEGLGDSKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL +YV+AG LG+K G G + Y
Sbjct:   258 PCPLLRKYVNAGWLGRKTGRGFYVY 282

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SPO_0717 SPO_0717 "3-hydroxybutyryl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 139/270 (51%), Positives = 177/270 (65%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IA +  + G DV L D    AL  A  ++  ++ +   +G++S+A    A  R+  T  L
Sbjct:    18 IAHVMALAGYDVLLTDISQQALDAALSTVRGNLARQAGRGKISEADMEAAMARISTTLAL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
              DL   D+++EA  E E VK+ +F +L        IL SNTSSISITRLAS T RP + +
Sbjct:    78 ADLGQTDLVIEAATEREAVKQAIFEDLQPHLLPHTILTSNTSSISITRLASRTDRPERFM 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             G HFMNP P+M+LVE+IRG  T + TF A KA+ ++ GKT   ++D+  FIVNRILMPMI
Sbjct:   138 GFHFMNPVPVMQLVELIRGIATDEATFAACKAVVDKLGKTAASAEDFPAFIVNRILMPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA +TLY GV     ID  MKLG N PMGPL+LADFIGLD CL+IM VLH GL D+KY 
Sbjct:   198 NEAVYTLYEGVGNVRSIDESMKLGANHPMGPLELADFIGLDTCLAIMNVLHDGLADTKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDYR-RVP 288
             PCPLL +YV+AG LG+K   G +DYR  VP
Sbjct:   258 PCPLLTKYVEAGWLGRKTQRGFYDYRGEVP 287

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019605 "butyrate metabolic process" evidence=ISS

TIGR_CMR|CHY_1603 CHY_1603 "3-hydroxybutyryl-CoA dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 132/265 (49%), Positives = 181/265 (68%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IAQ+    G +  L D + D + +  ++I  S+ KFV KG++++A   +   R++ + +L
Sbjct:    18 IAQVAAQAGFETVLHDLNLDIVNKGLETIKKSLAKFVEKGKITEAEKNEILGRIKPSDSL 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             K+    D+++EA+VE  +VK K+F+ELD+I    AILA+NTSS+ IT +A+ T RP +VI
Sbjct:    78 KNAADCDLVIEAVVEKMEVKAKIFAELDQIAPPHAILATNTSSLPITEIAATTKRPERVI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHFMNP PLMKLVE+IRG  TSDE ++  + L+ +  K  V  +D  GF+ NR+L  MI
Sbjct:   138 GMHFMNPVPLMKLVEIIRGLQTSDEVYQVIEELSRKMDKVPVECKDVPGFVSNRVLQVMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA + LY GVA+ E ID  MKLG N PMGPL LAD IGLD  L+I++VL+ G GD KY 
Sbjct:   198 NEAIWCLYEGVASVEGIDTIMKLGMNHPMGPLALADLIGLDTVLAILEVLYNGYGDPKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL QYV AG LG+K G G ++Y
Sbjct:   258 PCPLLRQYVKAGWLGRKTGRGFYNY 282

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019626 "short-chain fatty acid catabolic process" evidence=ISS

DICTYBASE|DDB_G0280465 DDB_G0280465 "3-hydroxyacyl-CoA dehydrogenase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 139/266 (52%), Positives = 178/266 (66%)

Query:    20 IAQ-LGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78
             IAQ L  +   +V LVD +   + ++  +I+  +QK V+KG +++       +R+  + +
Sbjct:    35 IAQVLAQVAKRNVILVDLNKAVVEKSLININGFLQKSVAKGVITEEDRQSTLKRISFSDD 94

Query:    79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
             L  L + D ++EAIVE+ ++K  LF +L KI K  AILASNTSSISIT++AS T+ P  V
Sbjct:    95 LNSLKNVDFVIEAIVENTEIKCNLFKDLSKICKPEAILASNTSSISITQIASNTNNPQNV 154

Query:   139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPM 198
             IGMHFMNP P+MKLVEVI    T+DET + T  LA    KT   S+D  GFI NR+LMP 
Sbjct:   155 IGMHFMNPVPIMKLVEVIPSLQTNDETLKTTMELAAEMNKTTTLSKDMPGFIANRLLMPY 214

Query:   199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
             INEA   L+ G+ T+EDID  MKLG N PMGPL LADFIGLD C SIM +LHT LGD KY
Sbjct:   215 INEAVQALHEGLGTREDIDTTMKLGCNMPMGPLTLADFIGLDTCYSIMNILHTQLGD-KY 273

Query:   259 APCPLLVQYVDAGRLGKKRGIGVFDY 284
              P PLL +YV+AGRLGKK   G + Y
Sbjct:   274 KPSPLLKRYVEAGRLGKKVKHGFYTY 299

GO:0070403 "NAD+ binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|CHY_1292 CHY_1292 "3-hydroxybutyryl-CoA dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 130/265 (49%), Positives = 182/265 (68%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IAQ+    G  V+L D + + + +   +I+ ++++ V+KG+L+     +   R++   N+
Sbjct:    16 IAQVFAQAGFKVFLRDIEINLVEKGLTTINKNLERLVNKGKLTLEDKQEIIGRIKGIVNI 75

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             ++  + D++VE IVE+ +VKKK+F+ELD+I  A+ I A+NTSS+SIT LA+ T RP +VI
Sbjct:    76 EEAQNVDLVVEGIVENIEVKKKVFAELDEIFPANTIFATNTSSLSITDLAAVTKRPEKVI 135

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             GMHF NP P+M+LVEVI+G  TS+ET++    L  + GKT V   +  GF+VNR+L+PMI
Sbjct:   136 GMHFFNPVPVMQLVEVIKGVATSEETYQTICDLVRQLGKTPVTVNEAPGFVVNRLLIPMI 195

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA + L  GVAT EDID  M+LG N PMGPL LAD IGLDVCL+IM+ LH   GD KY 
Sbjct:   196 NEAAYLLMEGVATAEDIDTAMRLGANHPMGPLALADLIGLDVCLAIMETLHKEFGDDKYR 255

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             PCPLL + V AG LG+K   G + Y
Sbjct:   256 PCPLLRKMVRAGHLGRKTQRGFYQY 280

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0019626 "short-chain fatty acid catabolic process" evidence=ISS

UNIPROTKB|Q4KER0 PFL_2166 "3-hydroxybutyryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 122/265 (46%), Positives = 169/265 (63%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
             IAQ+    G DV L+D    AL +A  +I  ++ + VSKG L +     A  R+R +++ 
Sbjct:    18 IAQVCAQAGFDVTLLDIAQGALEKALATIGKNLDRQVSKGTLGEDDKLAALGRIRISTDY 77

Query:    80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
               L  A +++EA  E+ D+K K+  ++     A  ++ASNTSS+SIT+LA++ S P + I
Sbjct:    78 GVLKDAQLVIEAATENLDLKLKVLQQIAAQVSAECVIASNTSSLSITQLAASVSAPERFI 137

Query:   140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
             G+HF NP P+M L+EVIRG  TSD T      +A+R GKT + + +  GF+VNRIL+PMI
Sbjct:   138 GLHFFNPVPVMGLIEVIRGLQTSDATHALAMDMAQRLGKTAITAGNRPGFVVNRILVPMI 197

Query:   200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYA 259
             NEA      G+A+ EDIDAGM+LG NQP+GPL LAD IGLD  L+I++  + G  DSKY 
Sbjct:   198 NEAILVFQEGLASAEDIDAGMRLGCNQPIGPLALADLIGLDTLLAILEAFYDGFNDSKYR 257

Query:   260 PCPLLVQYVDAGRLGKKRGIGVFDY 284
             P PLL + V AG LG+K G G   Y
Sbjct:   258 PAPLLKEMVAAGYLGRKTGRGFHHY 282

GO:0008691 "3-hydroxybutyryl-CoA dehydrogenase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

ASPGD|ASPL0000065284 hadA [Emericella nidulans (taxid:162425)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 127/261 (48%), Positives = 162/261 (62%)

Query:    31 VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVE 90
             V LVD    +L +  K     ++K VSK ++++     A  R+  + +L DL S D ++E
Sbjct:    59 VTLVDNSQASLDKGLKFADKLLEKDVSKDRITKEAADAARGRITSSLSLDDLSSVDFVIE 118

Query:    91 AIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR-------PCQVIGMHF 143
             A+ E  D+K  +FS+L +I     ILA+NTSSISIT++A+AT+        P +VI  HF
Sbjct:   119 AVPEIPDLKTSIFSKLAQIAPEHVILATNTSSISITKIAAATTTDPTNLQAPSRVISTHF 178

Query:   144 MNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAF 203
             MNP P+ K VE+I G  TS ET     A  +R GK    S D  GF+ NRILMP INEA 
Sbjct:   179 MNPVPVQKGVEIIAGLQTSKETIDTAIAFVQRMGKIASVSADSPGFLANRILMPYINEAI 238

Query:   204 FTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263
               L TG+ ++EDID+ MK GTN PMGPL LADFIGLD CL+IM VLH   GDSKY P  L
Sbjct:   239 ICLETGIGSREDIDSIMKNGTNVPMGPLTLADFIGLDTCLAIMNVLHQESGDSKYRPSGL 298

Query:   264 LVQYVDAGRLGKKRGIGVFDY 284
             L   V+AG LGKK G G +DY
Sbjct:   299 LKNMVNAGWLGKKSGKGFYDY 319

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=ISA

GO:0005739 "mitochondrion" evidence=ISA

GO:0070403 "NAD+ binding" evidence=IEA

UNIPROTKB|G4N0T7 MGG_16630 "3-hydroxybutyryl-CoA dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 129/262 (49%), Positives = 162/262 (61%)

Query:    31 VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPR-RLRCTSNLKDLHSADIIV 89
             V LVD    AL +        + K + K ++SQ    DA R RL  T+++  L   D ++
Sbjct:    59 VTLVDPSQGALDKGLSLADKLLSKDLQKSRISQE-DADATRGRLSPTTSMDSLADVDFVI 117

Query:    90 EAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPC-------QVIGMH 142
             EA+ E  ++K ++FS+L +I    AILA+NTSSISITR+A+AT++         +V+  H
Sbjct:   118 EAVPEIPNLKYEIFSKLAQICPKHAILATNTSSISITRIAAATTKDATDLSASSRVVSTH 177

Query:   143 FMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEA 202
             FMNP P+MK VE+I G  TS ET     A  +  GK    S D  GF+ NRILMP INEA
Sbjct:   178 FMNPVPVMKGVEIISGLQTSQETLDTAVAFCKAMGKVPSTSADSPGFLANRILMPYINEA 237

Query:   203 FFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP 262
                L T V  ++ ID  MK GTN PMGPLQLADFIGLD CL+IMKVLHT  GDSKY P  
Sbjct:   238 VICLETKVGDRDSIDTIMKTGTNVPMGPLQLADFIGLDTCLAIMKVLHTETGDSKYRPSV 297

Query:   263 LLVQYVDAGRLGKKRGIGVFDY 284
             LL + VDAG LGKK G G +DY
Sbjct:   298 LLQKMVDAGWLGKKSGKGFYDY 319

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1N338 HADH "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 116/275 (42%), Positives = 152/275 (55%)

Query:    20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
             IAQ+    G  V LVD   D L ++ K I  S++K   K       G D    + L   S
Sbjct:    42 IAQVAAATGHTVVLVDQTEDILEKSRKGIEESLRKVAKKKFAENPKGADEFVAKTLSSIS 101

Query:    78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
                D    +HS D++VEAIVE+  +K +LF  LDK      I ASNTSS+ IT LA++T+
Sbjct:   102 TSTDAASVVHSTDLVVEAIVENLQMKNELFKRLDKFAAEHTIFASNTSSLQITSLANSTT 161

Query:   134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
             R  +  G+HF NP PLMKLVEVI+   TS +TF +    +   GK  V  +D  GFIVNR
Sbjct:   162 RQDRFAGLHFFNPVPLMKLVEVIKTPMTSQKTFESLLDFSRALGKHPVACKDTPGFIVNR 221

Query:   194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
             +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct:   222 LLVPYLMEAVRLCERGEASKEDIDMAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEM- 280

Query:   254 GDSK---YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
              DSK   + PCP L + V   + GKK G G + Y+
Sbjct:   281 -DSKNPLFQPCPSLNKLVAEKKFGKKSGEGFYKYK 314

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O53753	FADB2_MYCTU	1, ., 1, ., 1, ., 1, 5, 7	0.3972	0.9528	0.9895	yes	no
Q9RVG1	HBD_DEIRA	1, ., 1, ., 1, ., 1, 5, 7	0.5444	0.9158	0.9784	yes	no
P52041	HBD_CLOAB	1, ., 1, ., 1, ., 1, 5, 7	0.5177	0.9494	1.0	yes	no
P41938	HCDH2_CAEEL	1, ., 1, ., 1, ., 3, 5	0.3806	0.9494	0.9126	yes	no
Q45223	HBD_BRAJA	1, ., 1, ., 1, ., 1, 5, 7	0.5473	0.9595	0.9726	yes	no
Q61425	HCDH_MOUSE	1, ., 1, ., 1, ., 3, 5	0.4062	0.9461	0.8949	yes	no
P45364	HBD_CLODI	1, ., 1, ., 1, ., 1, 5, 7	0.4802	0.9393	0.9928	yes	no
P45856	HBD_BACSU	1, ., 1, ., 1, ., 1, 5, 7	0.5229	0.9528	0.9860	yes	no
Q16836	HCDH_HUMAN	1, ., 1, ., 1, ., 3, 5	0.4048	0.9427	0.8917	yes	no
P00348	HCDH_PIG	1, ., 1, ., 1, ., 3, 5	0.4103	0.9393	0.8885	yes	no
Q9WVK7	HCDH_RAT	1, ., 1, ., 1, ., 3, 5	0.4027	0.9461	0.8949	yes	no
P77851	HBD_THETC	1, ., 1, ., 1, ., 1, 5, 7	0.5124	0.9461	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
4th Layer	1.1.1.157	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	0.0
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	1e-141
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	1e-138
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	1e-123
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	1e-102
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	1e-95
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	5e-93
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	2e-76
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	7e-73
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	8e-72
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	8e-63
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-56
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-52
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	1e-51
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	7e-47
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	4e-45
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	2e-43
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	3e-43
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	2e-39
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	2e-34
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	4e-24
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	4e-21
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	1e-20
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	4e-18
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-04
PRK09496	453	PRK09496, trkA, potassium transporter peripheral m	0.001

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  529 bits (1364), Expect = 0.0
 Identities = 217/292 (74%), Positives = 240/292 (82%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K +GVVG+GQMGSGIAQL    G+DVWL+D+DP AL R   SISSS+ + V KG++SQ 
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 65  MGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
                  R+RCT+NL++L  AD I+EAIVESED+KKKLFSELD+I K SAILASNTSSIS
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           ITRLASAT RP QVIGMHFMNPPP+MKLVE+IRGADTSDE F ATKALAERFGKTVVCSQ
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           DY GFIVNRILMPMINEAF+ LYTGVA+KEDID GMKLGTN PMGPL LADFIGLD CLS
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNAR 296
           IMKVLH GLGDSKY PCPLLVQYVDAGRLG+K G GV+ Y        P   
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDPPRLS 295

Length = 295

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  397 bits (1023), Expect = e-141
 Identities = 156/280 (55%), Positives = 206/280 (73%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ +GV+G+G MG+GIAQ+  + G DV +VD    A+ R   +I+ S+ + V KG++++A
Sbjct: 3   IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62

Query: 65  MGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124
               A  R+  T++L DL  AD+++EA  E+ D+KKK+F++LD+I K  AILA+NTSS+S
Sbjct: 63  DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122

Query: 125 ITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184
           IT LA+AT RP +VIGMHF NP P+MKLVE+IRG  TSD T  A +ALA++ GKT V  +
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244
           +  GF+VNRIL+PMINEA F L  GVAT EDID GMKLG N P+GPL LAD IGLD CL+
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242

Query: 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           IM+VL+ G GDSKY PCPLL + V AG LG+K G G +DY
Sbjct: 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  392 bits (1010), Expect = e-138
 Identities = 155/280 (55%), Positives = 202/280 (72%)

Query: 6   KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM 65
           K +GV+G+GQMG+GIA +  + G DV L D   D L     +I+ ++ + V+KG++S+  
Sbjct: 5   KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA 64

Query: 66  GTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              A  R+   ++L+DL   D+++EA  E E VK+K+F++L  + K  AILA+NTSSISI
Sbjct: 65  RAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185
           TRLASAT RP + IG+HFMNP P+MKLVE+IRG  T + TF A K    + GKT+  ++D
Sbjct: 125 TRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAED 184

Query: 186 YAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSI 245
           +  FIVNRIL+PMINEA +TLY GV + E ID  MKLG N PMGPL+LADFIGLD CLSI
Sbjct: 185 FPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCLSI 244

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           M+VLH GL DSKY PCPLLV+YV+AG LG+K G G +DYR
Sbjct: 245 MQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYR 284

Length = 292

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  354 bits (911), Expect = e-123
 Identities = 147/292 (50%), Positives = 193/292 (66%), Gaps = 1/292 (0%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           ++K + V+G+G MG+GIA +  + G DV L D  P+AL RA   I  +++K V KG+L++
Sbjct: 2   EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTE 61

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                A  R+  T++L  L  AD+++EA+VE  ++KK++F+EL+ + K  AILASNTSS+
Sbjct: 62  EEADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SIT LA A  RP + IG+HF NP PLM LVEVIRG  TSDET       A++ GKT V  
Sbjct: 122 SITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVV 181

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
           +D  GFIVNR+L  ++NEA   L  GVAT E+IDA M+ G   PMGP +LAD IGLDV L
Sbjct: 182 KDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241

Query: 244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPN 294
            IMKVL+  LG D  Y P PLL + V+AGRLG+K G G +DYR       PN
Sbjct: 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPN 293

Length = 307

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  299 bits (769), Expect = e-102
 Identities = 122/286 (42%), Positives = 183/286 (63%), Gaps = 2/286 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M + ++ +GVVG+GQMG+GIA++    G+DV + +T  +        I  S+++ VS+G+
Sbjct: 1   MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGK 60

Query: 61  LSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASN 119
           L++     A  RLR T++L D     +++EA+VE E VK ++F+ELDK+ T   A+LASN
Sbjct: 61  LTERERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASN 120

Query: 120 TSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALA-ERFGK 178
           TSSI I +LA+AT RP +V+G+HF NP P++ LVE++    TS+ T    +  A +  GK
Sbjct: 121 TSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGK 180

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
            VV +QD +GF+VN +L+P +  A   + +G AT EDID  M LG   PMGPL+L+D +G
Sbjct: 181 QVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240

Query: 239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           LD   +I   ++    +  YAP PLL++ V+AG LGKK G G + Y
Sbjct: 241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  283 bits (726), Expect = 1e-95
 Identities = 128/281 (45%), Positives = 181/281 (64%), Gaps = 2/281 (0%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ + VVG+G MG GIA +  + G    LVD   + L  A + I+S  ++ V++G+L++A
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 65  MGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
               A  RL  + +LK  +  AD+++EA+ E  ++KK +F   D    A   +A+NTS++
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           S T +AS T RP +VI MHF NP   MKLVE+IRG +TSDET +  K +AE+ GK  V  
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243
            ++ GF+ +RI   + NEAF+ L  GVAT EDID  ++LG N PMGPL+L D +GLD  L
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           + +K LH  LG+ KY P PLL +YV AGRLG+K G GV+DY
Sbjct: 241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDY 280

Length = 288

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  284 bits (728), Expect = 5e-93
 Identities = 120/296 (40%), Positives = 161/296 (54%), Gaps = 1/296 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
               +  + V+G+G MG+GIAQ+    G  V L D    A   A   I++ + K V KG+
Sbjct: 3   ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62

Query: 61  LSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           L+      A  RLR    L DL   D++VEAIVE  DVK+ LF++L+ I     ILA+NT
Sbjct: 63  LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SS+SIT +A+A   P +V G+HF NP PLMKLVEV+ G  T      A  ALA  +GKT 
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
           V ++D  GFIVNR   P   EA   L  GVA    IDA ++      MGP +L D IGLD
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242

Query: 241 VCLSIMK-VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNA 295
           V  ++M+ V      + ++ P  +  + V AGRLG+K G G + Y    +     A
Sbjct: 243 VNHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEA 298

Length = 507

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  230 bits (589), Expect = 2e-76
 Identities = 86/177 (48%), Positives = 119/177 (67%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD 68
            V+G+G MG+GIAQ+    GL+V LVD   +AL +A   I  S+ + V KG++++     
Sbjct: 3   AVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDADA 62

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
              R+  T++L D   AD+++EA+ E+ D+K++LF+ELD I    AILASNTSS+SIT L
Sbjct: 63  VLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITEL 122

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185
           A+AT RP + IG+HF NPPPLM LVEV+RG  TS ET     ALA++ GKT V  +D
Sbjct: 123 AAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKD 179

This family also includes lambda crystallin. Length = 180

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  232 bits (592), Expect = 7e-73
 Identities = 115/285 (40%), Positives = 165/285 (57%), Gaps = 1/285 (0%)

Query: 10  VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDA 69
           V+G+G MG+GIAQ+    G  V L D   +AL RA   I + +   V+KG+L+       
Sbjct: 10  VIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERT 69

Query: 70  PRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA 129
            +RL   ++L  L  A +++EAIVE+ +VKK LF++L+++  A  I+ASNTSS+SIT +A
Sbjct: 70  LKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIA 129

Query: 130 SATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF 189
           +  +RP +V G+HF NP P+M LVEV+ G  T+ E        A  +GK  V      GF
Sbjct: 130 AGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF 189

Query: 190 IVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK-V 248
           IVNR+  P   EA   L   VA    +DA ++ G   PMGP +L D IG DV  ++   V
Sbjct: 190 IVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFAVTCSV 249

Query: 249 LHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKP 293
            +    D ++ P  +  + V AGRLG+K G+GV+DYR   E+V P
Sbjct: 250 FNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  222 bits (568), Expect = 8e-72
 Identities = 116/291 (39%), Positives = 165/291 (56%), Gaps = 10/291 (3%)

Query: 3   EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSS---IQKFVSKG 59
             +KV+GVVGSG MG GIAQ+    G DV +VD   + L  A + I S    ++  V KG
Sbjct: 1   MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKG 60

Query: 60  QLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119
           ++S+        R+R +++ + L  AD IVEA+ E  D+K+K+F+EL++      I+ASN
Sbjct: 61  KMSEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASN 120

Query: 120 TSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT 179
           TS I I  +A+A  R  + IGMH+ NP P+MKL+EV+R A TS+ETF  T  L+++ GK 
Sbjct: 121 TSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKI 180

Query: 180 VVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGL 239
            +   D  GF   R +   + EA  +   G+AT +DID   KL    PMGP +L D IG+
Sbjct: 181 PIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGI 240

Query: 240 DVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKK------RGIGVFDY 284
           D    I + L+   GD ++ P   L Q V  G +G K      +G G FDY
Sbjct: 241 DTVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKG-GWFDY 290

Length = 291

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  200 bits (510), Expect = 8e-63
 Identities = 107/288 (37%), Positives = 157/288 (54%), Gaps = 17/288 (5%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           ++ + ++G+G MGSGIA L    GL V L+D    AL RA   I  ++  +   G  S  
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAG 63

Query: 65  MGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           MG     R+R  + L   +  AD+++EA+ E  ++K+ +F+ LD +     I A+NTS +
Sbjct: 64  MG-----RIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVC 182
            IT +A A +RP + +G HF  P  ++ LVEV+RG  TS +T   T AL    GK  V+ 
Sbjct: 119 PITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLV 178

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDA------GMKLGTNQPMGPLQLADF 236
            +D  GFI NRI   +  EA   L  GVA+ EDID       G++L      GPL+  D 
Sbjct: 179 KKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLAL---TGPLEQRDM 235

Query: 237 IGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
            GLDV L++   L+  L +++  P PLL + V+AG LG K G G + +
Sbjct: 236 NGLDVHLAVASYLYQDL-ENRTTPSPLLEEKVEAGELGAKSGQGFYAW 282

Length = 311

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  193 bits (493), Expect = 1e-56
 Identities = 112/310 (36%), Positives = 166/310 (53%), Gaps = 20/310 (6%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
            +  +GV+G G MG GIA +     GL V + D +P  +  A K     + K V +  L 
Sbjct: 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLK 367

Query: 63  QAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            +        +  T++ +    AD+++EA+ E   +K+++ +E+++      I ASNTSS
Sbjct: 368 PSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           + I ++A+A +RP QVIG+H+ +P   M LVEVI  A TS ET   T ALA++ GKT + 
Sbjct: 428 LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDV 241
            +D AGF VNRIL P INEA   L  G    E IDA + K G   P+GP+ L D +G+DV
Sbjct: 488 VRDGAGFYVNRILAPYINEAARLLLEGEPI-EHIDAALVKFGF--PVGPITLLDEVGIDV 544

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY--------RRVPESV-- 291
              I+ +L   LG+   AP     + ++  R G+K G G + Y        ++V ESV  
Sbjct: 545 GTKIIPILEAALGERFSAP-AAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYP 603

Query: 292 ----KPNARL 297
                P +RL
Sbjct: 604 LLGITPQSRL 613

Length = 708

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  182 bits (465), Expect = 1e-52
 Identities = 101/278 (36%), Positives = 137/278 (49%), Gaps = 4/278 (1%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD 68
            V+G+G MG GIA      G+ V + D +  AL       +  + K V +G++  A    
Sbjct: 317 AVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAG 376

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               +R T +       D++VEA+VE+  VK  + +E+++  +   ILASNTS+ISI+ L
Sbjct: 377 VLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLL 436

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           A A  RP    GMHF NP   M LVEVIRG  TSDET     A A + GKT +   D  G
Sbjct: 437 AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG 496

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKV 248
           F VNR+L P     F  L    A    ID  M+     PMGP  L D +G+D       V
Sbjct: 497 FFVNRVLFPYFA-GFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555

Query: 249 LHTGLGD--SKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +  G  D   K     + V + +A R G+K G G + Y
Sbjct: 556 MAEGFPDRMKKDYRDAIDVLF-EAKRFGQKNGKGFYRY 592

Length = 715

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  170 bits (434), Expect = 1e-51
 Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 4/285 (1%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           +K + V G+G +GS IA      G DV + D   +AL +A + I+    ++V   + ++ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 65  MGTD-APRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
              + A  R+  T++L + +  AD+++EA+ E  ++K   + EL K+     I A+N+S+
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK-TVV 181
           +  ++ A AT RP + + +HF N        E++    T  E F    A A+  G   +V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241
             ++  G+I+N +L+P ++ A      GVA  E ID    + T  PMGP  + D +GLD 
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 242 CLSIMKVLHTGLGDSKYAPCP-LLVQYVDAGRLGKKRGIGVFDYR 285
             +I         D        LL +Y+D G+LG   G G ++Y 
Sbjct: 243 AYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287

Length = 287

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  166 bits (422), Expect = 7e-47
 Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 6/283 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
           K+K +G++G G MG GIA +     G+ V + D +P  +  A K     + K V +  ++
Sbjct: 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMT 362

Query: 63  QAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            A   +    +  T++ +     DI++EA+ E   +K ++  ++++   A  I ASNTSS
Sbjct: 363 PAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS 422

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           + I ++A+A SRP  VIG+H+ +P   M LVEVI  A TS++T   T ALA++ GKT + 
Sbjct: 423 LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDV 241
             D AGF VNRIL P +NEA   L  G    E ID  + K G   P+GP+ L D +G+DV
Sbjct: 483 VADKAGFYVNRILAPYMNEAARLLLEGEPV-EHIDKALVKFGF--PVGPITLLDEVGIDV 539

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
              I  +L   LG+   AP  +  + +   R G+K G G + Y
Sbjct: 540 GAKISPILEAELGERFKAP-AVFDKLLSDDRKGRKNGKGFYLY 581

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  162 bits (411), Expect = 4e-45
 Identities = 94/284 (33%), Positives = 148/284 (52%), Gaps = 3/284 (1%)

Query: 2   EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL 61
           +  +K + V+G+G MG+GIAQ+ V  GL   L D  P  L R  + +   + K V + ++
Sbjct: 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKI 391

Query: 62  SQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121
           +          L  T +     +AD+++EA+ E   +K K+  E++ +     I+ASNTS
Sbjct: 392 TSLERDSILSNLTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS 451

Query: 122 SISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV 181
           ++ I  +A+ +SRP +VIGMH+ +P   M+L+E+I    TS +T  +  A+  + GK V+
Sbjct: 452 ALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVI 511

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241
             +D  GF   R L PM+ E    L  GV  K+      K G   P+G   LAD +G+DV
Sbjct: 512 VVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGF--PVGAATLADEVGVDV 569

Query: 242 CLSIMKVLHTGLGDSKYAPCP-LLVQYVDAGRLGKKRGIGVFDY 284
              + + L    G+        LL + V AG LG+K G G+F Y
Sbjct: 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIY 613

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score =  143 bits (363), Expect = 2e-43
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNR+L P++NEA   +  GVAT EDIDA M+LG   PMGP +L+D +GLDV   I++
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           VL    GD  Y P PLL + V+AGRLG+K G G + Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  156 bits (396), Expect = 3e-43
 Identities = 100/286 (34%), Positives = 140/286 (48%), Gaps = 8/286 (2%)

Query: 3   EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS 62
           + +K   V+G+G MG GIA      G  + + D +  +L       +  + K V +G+++
Sbjct: 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT 370

Query: 63  QAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
            A        +  T +     + DI+VEA+VE+  VK  + +E+++  +  AILASNTS+
Sbjct: 371 PAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST 430

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVC 182
           ISI+ LA A  RP    GMHF NP   M LVEVIRG  +SDET     A A + GKT + 
Sbjct: 431 ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIV 490

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242
             D  GF VNR+L P     F  L    A    ID  M+     PMGP  L D +G+D  
Sbjct: 491 VNDCPGFFVNRVLFPYFG-GFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTG 549

Query: 243 LSIMKVLHTG----LGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
                V+  G    +G         L    +A RLG+K G G + Y
Sbjct: 550 HHAQAVMAEGFPDRMGKDGRDAIDAL---FEAKRLGQKNGKGFYAY 592

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  139 bits (353), Expect = 2e-39
 Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 15/286 (5%)

Query: 16  MGSGIAQLGVMDGLDVWLVDTDP------DALVRATKS-ISSSIQKFVSKGQLSQAMGTD 68
           MG GIA      G DV L+D  P       AL    ++ I  ++   V+ G++  A    
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 69  APRRLRCT--SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              R+         D L  AD++ EA+ E  D K++    L +   A AI+AS TS+  +
Sbjct: 61  VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQ 184
           T L    + P + +  H++NP  LM LVEV     T         AL ER GK  VVC  
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI---GLDV 241
              G+IV RI    +NEA   +  GVA+ EDID  ++ G       L L +FI   G D+
Sbjct: 181 S-PGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDI 239

Query: 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287
                + L   +G  ++AP  ++V+ ++ GR G + G G +DY  V
Sbjct: 240 LYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285

Length = 314

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  126 bits (319), Expect = 2e-34
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA 64
           M  + ++G+G +G   A +    G +V L D DP A   A   I+  ++   +   L   
Sbjct: 2   MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE 61

Query: 65  MGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                  R+R T +L D +  AD + E+  E+ ++K+ LF+ELD +    AILAS+TS++
Sbjct: 62  APDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVVC 182
             +      +   + +  H +NPP L+ +VEV+    T+  T    +AL    G   V  
Sbjct: 122 LASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRL 181

Query: 183 SQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTN---QPMGPLQLAD 235
            ++  GF++NR+   ++ EAF  +  GVA+ +DIDA ++ G       MGP +  D
Sbjct: 182 RREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETID 237

Length = 308

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  101 bits (253), Expect = 4e-24
 Identities = 40/122 (32%), Positives = 59/122 (48%)

Query: 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV 210
           K   ++    TS     A  AL ++ GK V   +D  GF+  R +  ++NEA      G+
Sbjct: 379 KRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGI 438

Query: 211 ATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA 270
           A+  DID  M+LG N P+GPL   D +G    L +++ L    GD +Y P P L +    
Sbjct: 439 ASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAAL 498

Query: 271 GR 272
           G 
Sbjct: 499 GL 500

Length = 507

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 91.1 bits (226), Expect = 4e-21
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +K    +GSG +GSG     +  GLDV   D  P A      +++++      +G    
Sbjct: 6   DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPG 65

Query: 64  AMGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122
           A    +P RLR  + ++  +  AD I E+  E E +K +L   + +  K  AI+AS+TS 
Sbjct: 66  A----SPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSG 121

Query: 123 ISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVV 181
           +  T   +  + P + +  H  NP  L+ LVEV+ G  T+ E   A   +    G + + 
Sbjct: 122 LLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLH 181

Query: 182 CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLG 223
             ++  GFI +R+L  +  EA   +  GVAT  +ID  ++ G
Sbjct: 182 VRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFG 223

Length = 321

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 64/219 (29%), Positives = 113/219 (51%), Gaps = 14/219 (6%)

Query: 11  VGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAP 70
           +G G +G G A   ++ G+DV + D  P+A           I + ++  + + AM TDAP
Sbjct: 10  IGGGVIGGGWAARFLLAGIDVAVFDPHPEA--------ERIIGEVLANAERAYAMLTDAP 61

Query: 71  R----RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
                RL   ++L + +  AD I E++ E  D+K+++ +E+D   +  A++ S+TS    
Sbjct: 62  LPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLP 121

Query: 126 TRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFG-KTVVCSQ 184
           + L    + P ++   H  NP  L+ LVE++ G  TS ET R  K +    G K V  ++
Sbjct: 122 SDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAK 181

Query: 185 DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLG 223
           +   F+ +R+L  +  EA + +  G+AT E+ID  ++  
Sbjct: 182 EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYS 220

Length = 495

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 37/116 (31%), Positives = 57/116 (49%)

Query: 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV 210
           K + +   A   D   R      ++ GK V+   DY G ++ R +  + NEA   +  GV
Sbjct: 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGV 437

Query: 211 ATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQ 266
           A+ +DID  M+LG N P GPL  A  +G    L +++ L    G+ +Y P  LL +
Sbjct: 438 ASAQDIDTAMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRR 493

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I  R +M M+NEA   L  G+  +  D D G   G   P    GP +  D +G    ++I
Sbjct: 618 IAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAI 677

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
           ++ L    GD ++ PC  LV+  + G 
Sbjct: 678 LERLAAQYGD-RFTPCERLVEMAERGE 703

Length = 708

>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane component; Reviewed

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 5  MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45
          MK++ +VG+GQ+G  +A+    +  DV ++DTD + L R  
Sbjct: 1  MKII-IVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ 40

Length = 453

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.98
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.96
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.94
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.93
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.88
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.87
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.87
PRK07417	279	arogenate dehydrogenase; Reviewed	99.82
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.81
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.8
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.78
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.78
PLN02688	266	pyrroline-5-carboxylate reductase	99.77
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.77
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.75
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.75
PLN02858	1378	fructose-bisphosphate aldolase	99.74
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.73
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.73
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.72
PLN02858	1378	fructose-bisphosphate aldolase	99.71
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.71
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.7
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.7
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK08507	275	prephenate dehydrogenase; Validated	99.69
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.69
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.69
PRK06545	359	prephenate dehydrogenase; Validated	99.68
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.68
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.66
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.66
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.65
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.64
PRK08655	437	prephenate dehydrogenase; Provisional	99.64
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.62
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.59
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.58
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.58
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.57
PLN02256	304	arogenate dehydrogenase	99.56
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.56
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.55
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.55
PRK07680	273	late competence protein ComER; Validated	99.54
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.54
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.54
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.53
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.51
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.49
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.49
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.47
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.46
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.46
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.45
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.45
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.45
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.44
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.44
PLN02712	667	arogenate dehydrogenase	99.43
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.42
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.42
PRK08818	370	prephenate dehydrogenase; Provisional	99.42
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.39
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.37
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.35
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.34
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.34
PLN02712	667	arogenate dehydrogenase	99.32
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.32
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.31
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.31
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.3
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.28
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.27
PTZ00117	319	malate dehydrogenase; Provisional	99.27
PRK06223	307	malate dehydrogenase; Reviewed	99.26
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.25
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.25
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.23
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.2
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.17
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.13
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.12
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	99.12
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	99.11
PRK12480	330	D-lactate dehydrogenase; Provisional	99.02
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.98
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.97
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.93
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.9
PRK06444	197	prephenate dehydrogenase; Provisional	98.88
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.86
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.84
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.84
PRK13243	333	glyoxylate reductase; Reviewed	98.83
PRK07574	385	formate dehydrogenase; Provisional	98.8
PLN03139	386	formate dehydrogenase; Provisional	98.79
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.78
PRK06436	303	glycerate dehydrogenase; Provisional	98.76
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.71
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.71
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.68
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.67
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.66
PRK08605	332	D-lactate dehydrogenase; Validated	98.65
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.63
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.62
PRK15076	431	alpha-galactosidase; Provisional	98.61
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.6
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.59
PLN02602	350	lactate dehydrogenase	98.58
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.58
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.54
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.53
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.47
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.46
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.46
PLN02928	347	oxidoreductase family protein	98.45
PRK05442	326	malate dehydrogenase; Provisional	98.4
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.4
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.38
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.38
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.34
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.34
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.34
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.33
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.3
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	98.3
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.3
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.26
PRK06141	314	ornithine cyclodeaminase; Validated	98.25
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PLN00112	444	malate dehydrogenase (NADP); Provisional	98.25
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.23
PRK06932	314	glycerate dehydrogenase; Provisional	98.21
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.21
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.2
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.2
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.2
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.2
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.18
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	98.18
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.18
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.17
PRK05225	487	ketol-acid reductoisomerase; Validated	98.16
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.13
PRK06487	317	glycerate dehydrogenase; Provisional	98.12
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.12
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.12
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.12
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.1
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	98.09
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.08
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	98.08
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	98.06
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.05
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.04
PLN00106	323	malate dehydrogenase	98.03
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.03
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.02
PLN02306	386	hydroxypyruvate reductase	98.01
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK04148	134	hypothetical protein; Provisional	98.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.98
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.96
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.91
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.9
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.89
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.89
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.88
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.85
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.81
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.8
PRK08618	325	ornithine cyclodeaminase; Validated	97.8
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.8
PLN02494	477	adenosylhomocysteinase	97.79
PTZ00325	321	malate dehydrogenase; Provisional	97.77
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.77
COG2910	211	Putative NADH-flavin reductase [General function p	97.76
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.76
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.75
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.74
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.74
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.73
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.72
PRK07340	304	ornithine cyclodeaminase; Validated	97.72
PRK05086	312	malate dehydrogenase; Provisional	97.7
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.68
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.68
PRK06407	301	ornithine cyclodeaminase; Provisional	97.67
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.67
PRK08291	330	ectoine utilization protein EutC; Validated	97.65
PLN00203	519	glutamyl-tRNA reductase	97.62
PRK10669	558	putative cation:proton antiport protein; Provision	97.59
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.59
PRK06823	315	ornithine cyclodeaminase; Validated	97.59
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.59
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.58
PRK06046	326	alanine dehydrogenase; Validated	97.58
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.56
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.56
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.56
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.54
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.54
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	97.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.52
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	97.51
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.51
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.5
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.5
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	97.49
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.49
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.48
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.46
PRK09496	453	trkA potassium transporter peripheral membrane com	97.44
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.43
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.43
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.41
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.4
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.38
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.33
PRK07589	346	ornithine cyclodeaminase; Validated	97.32
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.31
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.31
PRK06199	379	ornithine cyclodeaminase; Validated	97.3
PRK09496	453	trkA potassium transporter peripheral membrane com	97.28
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.24
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.23
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.21
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.18
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.18
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.18
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.15
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.12
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.11
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.08
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.08
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.07
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.06
COG5495	289	Uncharacterized conserved protein [Function unknow	97.03
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.01
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.99
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.97
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.95
PRK06153	393	hypothetical protein; Provisional	96.92
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.91
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.87
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.87
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.86
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.81
CHL00194	317	ycf39 Ycf39; Provisional	96.81
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.81
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	96.8
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.75
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.75
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.74
PRK11579	346	putative oxidoreductase; Provisional	96.73
PLN00016	378	RNA-binding protein; Provisional	96.7
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.7
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.69
PRK08163	396	salicylate hydroxylase; Provisional	96.68
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.67
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.66
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.64
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.63
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.62
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.61
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.61
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	96.57
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.57
PRK07045	388	putative monooxygenase; Reviewed	96.56
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.55
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.54
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.53
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.51
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.5
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.5
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.47
PRK08223	287	hypothetical protein; Validated	96.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.46
PLN03075	296	nicotianamine synthase; Provisional	96.45
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.41
PRK05868	372	hypothetical protein; Validated	96.4
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.37
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	96.36
PRK06847	375	hypothetical protein; Provisional	96.36
PRK07236	386	hypothetical protein; Provisional	96.35
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.35
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.34
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.33
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.33
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.32
PRK06753	373	hypothetical protein; Provisional	96.31
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.3
PLN03209	576	translocon at the inner envelope of chloroplast su	96.3
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.29
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.28
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	96.27
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.27
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.25
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.22
PRK14982	340	acyl-ACP reductase; Provisional	96.2
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.19
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.18
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.16
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.14
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.13
COG2344	211	AT-rich DNA-binding protein [General function pred	96.1
PRK06126	545	hypothetical protein; Provisional	96.09
PRK06185	407	hypothetical protein; Provisional	96.09
PRK07588	391	hypothetical protein; Provisional	96.07
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.06
PRK06139	330	short chain dehydrogenase; Provisional	96.06
PRK06475	400	salicylate hydroxylase; Provisional	96.04
PRK06270	341	homoserine dehydrogenase; Provisional	96.03
PRK07538	413	hypothetical protein; Provisional	96.03
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.02
PRK06349	426	homoserine dehydrogenase; Provisional	96.02
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.0
PRK07326	237	short chain dehydrogenase; Provisional	95.97
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.93
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.93
PRK08013	400	oxidoreductase; Provisional	95.93
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.91
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.91
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.9
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.89
PRK12939	250	short chain dehydrogenase; Provisional	95.88
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.88
PRK10637	457	cysG siroheme synthase; Provisional	95.88
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.85
PRK09414	445	glutamate dehydrogenase; Provisional	95.85
PRK07411	390	hypothetical protein; Validated	95.83
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	95.82
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.82
PRK07454	241	short chain dehydrogenase; Provisional	95.81
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.81
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.78
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.78
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.77
COG3349	485	Uncharacterized conserved protein [Function unknow	95.75
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.75
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.74
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.74
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.73
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	95.72
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.72
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.71
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.71
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	95.71
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.71
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.69
PRK07190	487	hypothetical protein; Provisional	95.67
PRK07877	722	hypothetical protein; Provisional	95.67
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.67
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.66
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.66
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	95.66
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.65
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.64
PRK10157	428	putative oxidoreductase FixC; Provisional	95.64
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.63
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	95.63
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.62
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.61
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.61
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.61
PRK09072	263	short chain dehydrogenase; Provisional	95.6
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.6
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.59
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	95.58
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	95.58
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.58
PRK09126	392	hypothetical protein; Provisional	95.57
PRK07102	243	short chain dehydrogenase; Provisional	95.57
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.56
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.56
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.54
PRK06138	252	short chain dehydrogenase; Provisional	95.52
PRK07478	254	short chain dehydrogenase; Provisional	95.52
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.52
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.51
PLN02383	344	aspartate semialdehyde dehydrogenase	95.5
PRK07890	258	short chain dehydrogenase; Provisional	95.49
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.48
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.47
PRK06172	253	short chain dehydrogenase; Provisional	95.46
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.46
PLN02985	514	squalene monooxygenase	95.45
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.43
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.43
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	95.41
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	95.41
PRK08703	239	short chain dehydrogenase; Provisional	95.41
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.41
PRK09186	256	flagellin modification protein A; Provisional	95.38
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.38
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.37
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.37
PRK07774	250	short chain dehydrogenase; Provisional	95.37
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.37
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.36
PLN02780	320	ketoreductase/ oxidoreductase	95.35
PRK07825	273	short chain dehydrogenase; Provisional	95.35
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.34
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.34
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.3
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	95.3
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.3
PRK06184	502	hypothetical protein; Provisional	95.3
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.29
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.27
PRK08862	227	short chain dehydrogenase; Provisional	95.27
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.27
PRK08017	256	oxidoreductase; Provisional	95.27
PRK07063	260	short chain dehydrogenase; Provisional	95.26
PRK08267	260	short chain dehydrogenase; Provisional	95.26
PRK10206	344	putative oxidoreductase; Provisional	95.26
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.25
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	95.24
PRK07208	479	hypothetical protein; Provisional	95.24
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.23
PRK07814	263	short chain dehydrogenase; Provisional	95.23
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.23
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PRK07832	272	short chain dehydrogenase; Provisional	95.22
PRK05866	293	short chain dehydrogenase; Provisional	95.22
PRK07067	257	sorbitol dehydrogenase; Provisional	95.21
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.21
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.21
PRK06180	277	short chain dehydrogenase; Provisional	95.2
PRK08643	256	acetoin reductase; Validated	95.19
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.19
PRK10538	248	malonic semialdehyde reductase; Provisional	95.18
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.16
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	95.16
PRK07109	334	short chain dehydrogenase; Provisional	95.15
PRK12828	239	short chain dehydrogenase; Provisional	95.14
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.14
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.12
PRK08328	231	hypothetical protein; Provisional	95.12
PRK07831	262	short chain dehydrogenase; Provisional	95.1
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.1
PRK05993	277	short chain dehydrogenase; Provisional	95.09
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.08
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	95.08
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.06
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.05
PRK05884	223	short chain dehydrogenase; Provisional	95.05
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.05
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	95.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	95.02
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.02
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.01
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.01
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.01
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	95.01
PRK07677	252	short chain dehydrogenase; Provisional	95.0
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.0
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.99
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.99
PRK06194	287	hypothetical protein; Provisional	94.96

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=1.4e-72  Score=483.81  Aligned_cols=283  Identities=51%  Similarity=0.799  Sum_probs=275.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||++||..++.+||+|+++|++++.++++.+.+++.++++.++|.++.++.+..+++++.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            57899999999999999999999889999999999999999999999999999999999998999999999999999999


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|+++++++++++|++||||+++++++++.+.+|+|++|+||||||++++++||+.+..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++.+++||.|++++|.|||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|+|+..
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022407          244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       244 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~  286 (297)
                      .+++.+++.++ ++.|.|++++++|++.|++|+|+|+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            99999998888 45788999999999999999999999999985

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=7.6e-74  Score=456.56  Aligned_cols=282  Identities=52%  Similarity=0.846  Sum_probs=269.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-----hcccCCceEEecC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM-----GTDAPRRLRCTSN   78 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~~   78 (297)
                      .+++|+|||+|.||++||+..+.+|++|+++|++++.++++.+.|.+.+.+..+++..+...     .+..+++|+.+++
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn   89 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN   89 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999999999999999999998887765433     2566789999999


Q ss_pred             ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEec
Q 022407           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR  157 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~  157 (297)
                      .++ ++++|+|||++.|+.++|+.+|++|++.+++++|++||||++.+++++..+.+|.||.|+|||||++++.++||+.
T Consensus        90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir  169 (298)
T KOG2304|consen   90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIR  169 (298)
T ss_pred             HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhc
Confidence            887 8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhh
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI  237 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~  237 (297)
                      ++.|+++++..+..+.+.+|++++.++|.||||+||++.++++||+++++.|.++.+|||.+|++|.||||||||++|.+
T Consensus       170 ~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dyv  249 (298)
T KOG2304|consen  170 TDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADYV  249 (298)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022407          238 GLDVCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       238 Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~  285 (297)
                      |||++..+|+.|++.+ +++.|.|+|+|.++|++|++|||+|.|||+|.
T Consensus       250 GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  250 GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            9999999999999999 45789999999999999999999999999994

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.3e-69  Score=469.66  Aligned_cols=284  Identities=43%  Similarity=0.712  Sum_probs=275.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |.+.+++|+|||+|.||.+||.+|+.+|++|++||++++.++++.+++++.+++++++|.++.++.+..+.+++++++++
T Consensus         1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~   80 (286)
T PRK07819          1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG   80 (286)
T ss_pred             CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH
Confidence            77778899999999999999999999999999999999999999999999999999999999888888899999999998


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhc-cCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKIT-KASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGA  159 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~  159 (297)
                      ++++||+||||+||+.++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+||+.++++||+++.
T Consensus        81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~  160 (286)
T PRK07819         81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL  160 (286)
T ss_pred             HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence            899999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHH-HhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhc
Q 022407          160 DTSDETFRATKALAE-RFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG  238 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~-~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~G  238 (297)
                      .|++++++++.+++. .+|+.|++++|.|||++||++.+++||+++++++|+++++|||.+++.|+|||+|||+++|.+|
T Consensus       161 ~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G  240 (286)
T PRK07819        161 VTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG  240 (286)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence            999999999999988 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022407          239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y  284 (297)
                      ++.+..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|
T Consensus       241 ld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             cHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999999999888999999999999999999999999999

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=7.7e-66  Score=476.55  Aligned_cols=288  Identities=39%  Similarity=0.634  Sum_probs=276.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||++||.+|+++||+|++||+++++++++.+++++.+++++++|.++.++.+..+.+++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            46899999999999999999999999999999999999999999999999999999999888888999999999998889


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||||+||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.+++|+|||+|+++++++|++.+..|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|++++++||.+++.++|||+|||+++|.+|+|+++
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCC
Q 022407          244 SIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESV  291 (297)
Q Consensus       244 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~~  291 (297)
                      .+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|++++...
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~  292 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAV  292 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCC
Confidence            9999888764 67789999999999999999999999999998765443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=8.4e-65  Score=487.61  Aligned_cols=288  Identities=34%  Similarity=0.540  Sum_probs=275.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.+++++++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  382 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF  382 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence            4679999999999999999998 589999999999999999999999999999999999988888889999999999889


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|+
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~  462 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS  462 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHH
Q 022407          163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC  242 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~  242 (297)
                      +++++++..+++.+||.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++
T Consensus       463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p~GPf~l~D~vGld~~  540 (699)
T TIGR02440       463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE-PVEHIDKALV-KFGFPVGPITLLDEVGIDVG  540 (699)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH-HcCCCcCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999996 9999999997 89999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCCCCC
Q 022407          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPN  294 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~~~~~  294 (297)
                      ..+++.++..+++ +|.|++++++|+++|++|+|+|+|||+|+++++...+|
T Consensus       541 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~  591 (699)
T TIGR02440       541 AKISPILEAELGE-RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVD  591 (699)
T ss_pred             HHHHHHHHHhcCC-CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCC
Confidence            9999999999998 79999999999999999999999999998766544333

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.2e-64  Score=468.29  Aligned_cols=289  Identities=41%  Similarity=0.616  Sum_probs=277.0

Q ss_pred             CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         2 ~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .+.+++|+|||+|.||.+||.+|+.+||+|++||++++.++++.+++++.+++++++|.++.++.+..+.+++.++++++
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~  161 (297)
                      +++||+||||+||+.++|+.+|+++++.+++++|++||||++++++++..+.+|+|++|+|||+|+++++++|++.+..|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHH
Q 022407          162 SDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV  241 (297)
Q Consensus       162 ~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~  241 (297)
                      ++++++++.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.++|||+|||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCC
Q 022407          242 CLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPES  290 (297)
Q Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~  290 (297)
                      ...+++.++... ++++|.|++++++|++.|++|+|+|+|||+|+++++.
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~  293 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQ  293 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCC
Confidence            999999888764 5678999999999999999999999999999766543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.1e-64  Score=487.54  Aligned_cols=282  Identities=33%  Similarity=0.535  Sum_probs=272.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+...++|+.++++++++
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  413 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK  413 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999999988899999999999998899


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~  493 (737)
T TIGR02441       414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSK  493 (737)
T ss_pred             cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++..+++++||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|+|+|||+++|.+|+|++.
T Consensus       494 ~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p~GP~~l~D~vGld~~~  571 (737)
T TIGR02441       494 DTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFPVGAATLADEVGVDVAE  571 (737)
T ss_pred             HHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999985 899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCC--CcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407          244 SIMKVLHTGLGDSKYA--PCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~  288 (297)
                      .+++.++..+++ +|.  |++++++|+++|++|+|+|+|||+|++++
T Consensus       572 ~v~~~l~~~~~~-~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~  617 (737)
T TIGR02441       572 HVAEDLGKAFGE-RFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK  617 (737)
T ss_pred             HHHHHHHHhcCc-ccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence            999999998887 673  68999999999999999999999998665

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.4e-64  Score=486.09  Aligned_cols=283  Identities=35%  Similarity=0.497  Sum_probs=271.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.++++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD  391 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            57899999999999999999999999999999999999999999999999999999999998888999999999998899


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+|||+++|+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~  471 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSD  471 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++..+++++||.|++++|.|||++||++.++++||++++++| +++++||.+++.++|||+|||+++|.+|+|+++
T Consensus       472 ~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~  550 (714)
T TIGR02437       472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGH  550 (714)
T ss_pred             HHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999 799999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407          244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       244 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~  287 (297)
                      ++++.++..+++.. ..|++++++|+++|++|+|+|+|||+|+++
T Consensus       551 ~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~  595 (714)
T TIGR02437       551 HAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEAD  595 (714)
T ss_pred             HHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccC
Confidence            99999998887732 235789999999999999999999999643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.4e-64  Score=487.05  Aligned_cols=283  Identities=35%  Similarity=0.508  Sum_probs=272.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|++++++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  391 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE  391 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence            46899999999999999999999999999999999999999999999999999999999888888899999999998899


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+|||++||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~  471 (715)
T PRK11730        392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSD  471 (715)
T ss_pred             CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+..+++.+||.|++++|.|||++||++.++++|++.++++| ++++|||.+++.++|||+|||+++|.+|+|++.
T Consensus       472 ~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~  550 (715)
T PRK11730        472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAH  550 (715)
T ss_pred             HHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhCCCccCHHHHHHhhchHHHH
Confidence            9999999999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407          244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       244 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~  287 (297)
                      .+++.++..+++.. +.|++++++|+++|++|+|+|+|||+|+++
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~  595 (715)
T PRK11730        551 HAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED  595 (715)
T ss_pred             HHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence            99999998888742 345789999999999999999999999743

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.4e-63  Score=433.96  Aligned_cols=282  Identities=29%  Similarity=0.512  Sum_probs=266.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-hcccCCceEEecCccc-
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM-GTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~-   81 (297)
                      .+++|+|||+|.||.+||..|+.+|++|++||++++.++++.+.+++.++.+.+.+.++.++ .+....+++.++++++ 
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46799999999999999999999999999999999999999999999988888888777655 5566788889999876 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~  161 (297)
                      +++||+||+|+|++.++|+.+++++.+.++++++|++|||+++++++++.+.++.|++|+||++|++.++++|++++..|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchH
Q 022407          162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       162 ~~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~  240 (297)
                      ++++++++.++++.+|+.|+++ +|.|||++||++.++++||++++++|+++++|||.+++.++|+|+|||+++|.+|+|
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999988 599999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCC-CcHHHHHHHHcCCCCcccCCcccccC
Q 022407          241 VCLSIMKVLHTGLGDSKYA-PCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~~G~~~g~Gfy~y~  285 (297)
                      .+..+++.+++.++++++. |++++++|+++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            9999999999999987653 89999999999999999999999995

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=8.5e-64  Score=481.73  Aligned_cols=283  Identities=36%  Similarity=0.550  Sum_probs=273.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.++.++.+....+|+++++++++
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  387 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGF  387 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHh
Confidence            4789999999999999999999 889999999999999999999999999999999999988888889999999999889


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|+
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts  467 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTS  467 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHH
Q 022407          163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC  242 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~  242 (297)
                      +++++.+..+++.+|+.|++++|.|||++||++.+++||+++++++|+ +++|||.+++ ++|||+|||+++|.+|++.+
T Consensus       468 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p~GPf~~~D~~Gld~~  545 (708)
T PRK11154        468 AETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE-PIEHIDAALV-KFGFPVGPITLLDEVGIDVG  545 (708)
T ss_pred             HHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999996 8999999998 89999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~  289 (297)
                      .++++.++..+++ +|.|++++++|+++|++|+|+|+|||+|+++++
T Consensus       546 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~  591 (708)
T PRK11154        546 TKIIPILEAALGE-RFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGK  591 (708)
T ss_pred             HHHHHHHHHHcCC-CCCCCHHHHHHHHCCCCcccCCceEEECCCCcc
Confidence            9999999998886 899999999999999999999999999986544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.4e-63  Score=432.16  Aligned_cols=284  Identities=45%  Similarity=0.712  Sum_probs=268.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||.+||..|+++|++|++||+++++++.+.+++...++..++.|.++..+.+....+++.++++++ ++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            46899999999999999999999999999999999999999888888887788888887777777788888888865 89


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.+++++++++|||+++++++++.+.++.+++|+||++|++.++++|++.++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      +++++++++++.+|+++++++|.|||++||++.+++|||++++++|+++++|||.+++.|+|||+|||+++|.+|++.+.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~  289 (297)
                      ..++.++..+++ +|.|+++|.+|+++|++|+|+|+|||+|+++++
T Consensus       241 ~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~  285 (288)
T PRK09260        241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDYTNREN  285 (288)
T ss_pred             HHHHHHHHHhCC-CCCCCHHHHHHHHCCCCccccCCEEEECCCCCC
Confidence            999999998887 899999999999999999999999999987553

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=6.1e-63  Score=433.45  Aligned_cols=285  Identities=76%  Similarity=1.175  Sum_probs=272.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..|+.+|++|++||+++++++.+.+++++.++++++.|.++.++.+....+++++++.+.++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            46799999999999999999999999999999999999999999999999999999988877777778888888887799


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|++|+.++|+.+++++.+.++++++|+||||+++++++++.+.++.+++++||++||...+++|++.+..+++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++++.+|+.+++++|.+||++||++.++++|+++++++|+++++|||.+++.|+|||+|||+++|.+|++.+.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~  288 (297)
                      .+++.++..+++++|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            999999999988789999999999999999999999999997744

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.5e-63  Score=431.62  Aligned_cols=280  Identities=56%  Similarity=0.901  Sum_probs=269.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++||+|||+|.||.+||..++++|++|+++|+++++++++.+++++.++.+.+.|.++.++......+++++++++++++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~   82 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD   82 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence            56899999999999999999999999999999999999999999999999999998887766667788888888878999


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHH
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE  164 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~  164 (297)
                      ||+||+|+|++..+|+++++++.++++++++|+|+||+++++++++.++++.|++++||++|++..+++|++++..++++
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e  162 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA  162 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHH
Q 022407          165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS  244 (297)
Q Consensus       165 ~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~  244 (297)
                      +++.+.++++.+|+.|++++|.|||+.||++.+++||+++++++|+++++|||.+++.|+|||+|||+++|.+|++.+..
T Consensus       163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~  242 (282)
T PRK05808        163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA  242 (282)
T ss_pred             HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022407          245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y  284 (297)
                      +++.+++.+++++|+|++++++|+++|++|+|+|+|||+|
T Consensus       243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            9999999999878999999999999999999999999999

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.7e-62  Score=430.09  Aligned_cols=283  Identities=55%  Similarity=0.924  Sum_probs=269.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++.++.+.+.|.++.++.+....+++++++++++++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   83 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLAD   83 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcC
Confidence            67999999999999999999999999999999999999999999999888888888877766677788888888888999


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHH
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE  164 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~  164 (297)
                      ||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++++++.+.++.+++++||++|++.++++|++.+..|+++
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~  163 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEA  163 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999888999999999999989999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHH
Q 022407          165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS  244 (297)
Q Consensus       165 ~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~  244 (297)
                      +++++.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||+|||+++|.+|++.+..
T Consensus       164 ~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~~  243 (292)
T PRK07530        164 TFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCLS  243 (292)
T ss_pred             HHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407          245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~  287 (297)
                      +++.+++.+++++|+|++++++|+++|++|+|+|+|||+|+++
T Consensus       244 ~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        244 IMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999998878999999999999999999999999999655

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.4e-62  Score=430.15  Aligned_cols=281  Identities=41%  Similarity=0.624  Sum_probs=265.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+++++   .++.+.+.|.++.++.+....++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            46799999999999999999999999999999999999988887776   366677788877777777778888888876


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~  160 (297)
                      .+++||+||+|+|++.++|+++++++.+.++++++|+|+||+++++++++.+.++.|++++||++|+++++++|++.+..
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchH
Q 022407          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~  240 (297)
                      |++++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+++++|||.+++.++|+|+|||+++|.+|++
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCccc-----CCccccc
Q 022407          241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKR-----GIGVFDY  284 (297)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~-----g~Gfy~y  284 (297)
                      ++..+++.+++.+++++|.|+++|++|+++|++|+|+     |+|||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            9999999999999988899999999999999999999     9999999

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.6e-60  Score=415.95  Aligned_cols=271  Identities=32%  Similarity=0.477  Sum_probs=259.1

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC--ccc-ccCC
Q 022407           16 MGSGIAQLGVMDGLDVWLVDTDPD-------ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN--LKD-LHSA   85 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~a   85 (297)
                      ||++||..++.+|++|++||++++       .++++.+++++.+++++++|.++.++.+..+++++++++  ..+ +++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467799999999999999999998888888999998865  334 8999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHH
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDET  165 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~  165 (297)
                      |+||||+||+.++|+.+|+++.+.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||+.+..|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhchHHH
Q 022407          166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIGLDVC  242 (297)
Q Consensus       166 ~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~Gl~~~  242 (297)
                      ++++.++++.+|+.+++++|.+||++||++.++++|++.++++|++++++||.+++.|+|||   +|||+++|.+|++.+
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999   599999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022407          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~  286 (297)
                      ..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            99999999988887899999999999999999999999999965

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.9e-59  Score=407.68  Aligned_cols=279  Identities=27%  Similarity=0.403  Sum_probs=250.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+++++.++.+.+.|. ..   .....+++.++++++ +
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~av   81 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEACV   81 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHHh
Confidence            368999999999999999999999999999999999999999999999988887763 32   233467888888876 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||||+||+.++|+.+|+++.+.+++++||.||||+++++++++.+.+|.|++++||||||+.+++|||+++..|+
T Consensus        82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~  161 (321)
T PRK07066         82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA  161 (321)
T ss_pred             cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG  238 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G  238 (297)
                      +++++++..+++.+|++|+++ +|.|||++||++.++++||++++++|+++++|||.+++.|+|+|   +|||+++|.+|
T Consensus       162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~G  241 (321)
T PRK07066        162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAG  241 (321)
T ss_pred             HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcC
Confidence            999999999999999999998 79999999999999999999999999999999999999999998   89999999999


Q ss_pred             hHH-HHHHHHHHHhhcCCC--CCCCcHHHHHHHH------cCCCCcccCCcccccCC
Q 022407          239 LDV-CLSIMKVLHTGLGDS--KYAPCPLLVQYVD------AGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       239 l~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~------~g~~G~~~g~Gfy~y~~  286 (297)
                      ++. ....++++.+.+.++  .+.+++++.++++      ++.+|.++..+||.|.+
T Consensus       242 ld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        242 GDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            997 444556665554321  2344556666666      68999999999999975

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.2e-53  Score=374.04  Aligned_cols=279  Identities=37%  Similarity=0.585  Sum_probs=249.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+.+..+.+.+.     ......+++.++++++ +
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999998887766554433222211     0012345667777776 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||+|+|++.+.++.+++++.+.++++++|+|+|++++++++++.+.++.+++++||++||...++++++++..++
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988888899999999999988899999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEec-cchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407          163 DETFRATKALAERFGKTVVCSQ-DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG  238 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~-d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G  238 (297)
                      +++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|+++++++|.+++.++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            9999999999999999999885 7899999999999999999999999999999999999999999   69999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407          239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~  288 (297)
                      ++.+..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus       238 l~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        238 LDVHLAVASYLYQDLEN-RTTPSPLLEEKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             cchHHHHHHHHHHhcCC-cCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence            99999999999998876 79999999999999999999999999997643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.2e-45  Score=325.35  Aligned_cols=266  Identities=28%  Similarity=0.399  Sum_probs=248.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++......+++.++++++ ++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            46899999999999999999999999999999999999999999999998889998877666777788888889876 79


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+|++.++++.+++++.+.+++++++.|+|++++++++++.+.++.++++.||++|++..+++|++++..|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999998889999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhh--
Q 022407          164 ETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI--  237 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~--  237 (297)
                      +++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++++++||.+++.|+|++   +|||++.|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 58899999999999999999999999999999999999999998   8999999987  


Q ss_pred             -chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHc
Q 022407          238 -GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA  270 (297)
Q Consensus       238 -Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  270 (297)
                       |++........++..+.++++.|+|++.++++.
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~  275 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR  275 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence             899999999999999988889999999988874

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=1.2e-40  Score=310.18  Aligned_cols=246  Identities=25%  Similarity=0.395  Sum_probs=208.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +++||+|||+|.||++||..|+++|++|++||+++++++.+.+.++.....+.   .+... .....+++++++++++ +
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence            36799999999999999999999999999999999988776544333222111   11110 0011235678888875 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||+|+||+.++|+.+++++.+.++++++|.|+||+++++++++.+.++.+++..|||+||+..+++|+++++.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG  238 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G  238 (297)
                      ++++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++++++||.+++.|+|++   +|||++.|+.|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            999999999999999999998 58999999999999999999999999999999999999988775   79999999998


Q ss_pred             hH-HHHHHHHHHHhhc
Q 022407          239 LD-VCLSIMKVLHTGL  253 (297)
Q Consensus       239 l~-~~~~~~~~~~~~~  253 (297)
                      ++ .....++++.+.+
T Consensus       239 ~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        239 GEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cHHHHHHHHHHhchhh
Confidence            54 3444445544433

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=1.6e-41  Score=275.39  Aligned_cols=179  Identities=47%  Similarity=0.693  Sum_probs=161.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      ||+|||+|.||++||..++.+|++|++||++++.++.+.+++++.++.++++|.+++++.+....+++++++++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999977999


Q ss_pred             EEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHH
Q 022407           87 IIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETF  166 (297)
Q Consensus        87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~  166 (297)
                      +||||+||+.++|+++|++|++.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEEEecc
Q 022407          167 RATKALAERFGKTVVCSQD  185 (297)
Q Consensus       167 ~~~~~l~~~lG~~~v~~~d  185 (297)
                      +++..+++.+|+.|++++|
T Consensus       161 ~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES
T ss_pred             HHHHHHHHHCCCEEEEecC
Confidence            9999999999999999876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-40  Score=282.85  Aligned_cols=265  Identities=30%  Similarity=0.414  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCcEEEEecccC
Q 022407           16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVES   95 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~   95 (297)
                      ||++||..+..+|++|++.|.+...++....++...+...+..+.++..+......+++.+.|++.++++|+||+++.|+
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999889999999888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHH
Q 022407           96 EDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER  175 (297)
Q Consensus        96 ~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~  175 (297)
                      .++|++++.+|++.+++++|+.+|||++++.++++.+++++.++|+|||.|.+.++++|++.+..|+..+...+.+.-..
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCC
Q 022407          176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD  255 (297)
Q Consensus       176 lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~  255 (297)
                      .|+.|+++++.+||.+||++.++.+++.+++.+-++++..+|...+ -+|||+||+.+.|..|+++..+.-..+...+++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t-~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~  239 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLIT-KFGFRVGERALADGVGFDVAEALAVGLGDEIGP  239 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHH-hcCccccHHHHhhccCccHHHHHhhccchhccc
Confidence            9999999999999999999999999999999996689999999987 599999999999999999877665554333333


Q ss_pred             CCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407          256 SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       256 ~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~  287 (297)
                           . +..++++.|+.|+|+|+|||.|++.
T Consensus       240 -----r-~~eel~~~~~~g~kT~kg~y~y~~~  265 (380)
T KOG1683|consen  240 -----R-IEEELLEKGRAGIKTGKGIYPYARG  265 (380)
T ss_pred             -----h-hHHHHHHHHhhhhhccCcccccccc
Confidence                 2 6889999999999999999999875

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=5.7e-38  Score=251.23  Aligned_cols=233  Identities=29%  Similarity=0.425  Sum_probs=216.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..||+|+|.|.+|++||..|+..||+|.+||+.++++..+.+.+++.+.++.++|.+.+. .+++.+..|+.++++.+ +
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v   82 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV   82 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence            579999999999999999999999999999999999999999999999998888765432 45666788888999988 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++|=.|.||+||+.++|..++++|+..+.+.+|+.|+||++.++.+.+.+.+.++++..||+|||...|++|+++.+-|+
T Consensus        83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs  162 (313)
T KOG2305|consen   83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS  162 (313)
T ss_pred             hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---cHHHHHHhh
Q 022407          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADFI  237 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~---Gp~~~~D~~  237 (297)
                      |+++++.+++++.+|.+|+.. .+..||..||+.++++||..++++.|+.+..|+|.+|..|+|.+.   ||++.+.+.
T Consensus       163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN  241 (313)
T KOG2305|consen  163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN  241 (313)
T ss_pred             hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence            999999999999999988854 678899999999999999999999999999999999999999874   999998654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.98  E-value=3.2e-31  Score=246.61  Aligned_cols=168  Identities=27%  Similarity=0.384  Sum_probs=155.8

Q ss_pred             hccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          109 ITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       109 ~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      .+++++++.+++++.+.+..+....+|.+++++|||+|++.++++||+.+..|++++++.+..+++.+|+.|++++|.+|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G  416 (507)
T PRK08268        337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG  416 (507)
T ss_pred             cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence            45667788877777666677666677899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHH
Q 022407          189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYV  268 (297)
Q Consensus       189 ~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  268 (297)
                      |++||++.+++|||++++++|+++++|||.+++.|+|||+|||+|+|.+|++.++.+++.+++.+++++|+|+++|++|+
T Consensus       417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v  496 (507)
T PRK08268        417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA  496 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HcCCCCcccCCcccc
Q 022407          269 DAGRLGKKRGIGVFD  283 (297)
Q Consensus       269 ~~g~~G~~~g~Gfy~  283 (297)
                      ++|       +.||.
T Consensus       497 ~~G-------~~~~~  504 (507)
T PRK08268        497 ALG-------LSLRS  504 (507)
T ss_pred             HcC-------CCcCC
Confidence            986       46865

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.96  E-value=7.9e-30  Score=186.66  Aligned_cols=97  Identities=51%  Similarity=0.908  Sum_probs=92.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQY  267 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  267 (297)
                      ||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|++++..+++.+++.++++.|+|++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999778999999999


Q ss_pred             HHcCCCCcccCCccccc
Q 022407          268 VDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       268 ~~~g~~G~~~g~Gfy~y  284 (297)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.94  E-value=3.9e-26  Score=212.04  Aligned_cols=122  Identities=31%  Similarity=0.499  Sum_probs=117.7

Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccH
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP  230 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp  230 (297)
                      ..+||+++..|++++++.+..+++++|+.|++++|.|||++||++.+++|||++++++|+++++|||.+++.|+|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCC
Q 022407          231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGR  272 (297)
Q Consensus       231 ~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  272 (297)
                      |+|+|.+|++.+..+++.+++.+++++|+|+++|++++..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            999999999999999999999999879999999999998864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.93  E-value=6.2e-24  Score=181.34  Aligned_cols=190  Identities=23%  Similarity=0.302  Sum_probs=146.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL-VRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (297)
                      +||+|||+|.||.+||.+|.++||+|++|||++++. +.+           .+.|.             ....++. .++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~-----------~~~Ga-------------~~a~s~~eaa~   56 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL-----------AAAGA-------------TVAASPAEAAA   56 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH-----------HHcCC-------------cccCCHHHHHH
Confidence            489999999999999999999999999999999984 333           44454             3455554 489


Q ss_pred             CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCC-------cc
Q 022407           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      +||+||.|+|++.++...++.  .+.+.++++++++ ++|.++.. .++++.+    .-.|.+|++.|-..       +.
T Consensus        57 ~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~----~~~G~~~lDAPVsGg~~~A~~Gt  132 (286)
T COG2084          57 EADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAAL----AAKGLEFLDAPVSGGVPGAAAGT  132 (286)
T ss_pred             hCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHH----HhcCCcEEecCccCCchhhhhCc
Confidence            999999999999998888885  4666677777766 33333332 4566554    23467788877322       23


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +.|+.|  ++++.+++++++|+.+|++++++++. .|   .++|+++..    .+.||+.+.++.+++++.+..+++.+.
T Consensus       133 LtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~  210 (286)
T COG2084         133 LTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA  210 (286)
T ss_pred             eEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence            567766  89999999999999999999999875 33   488888764    568999999999999999999998764


Q ss_pred             C
Q 022407          225 N  225 (297)
Q Consensus       225 g  225 (297)
                      +
T Consensus       211 ~  211 (286)
T COG2084         211 A  211 (286)
T ss_pred             c
Confidence            4

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.88  E-value=2.6e-21  Score=169.59  Aligned_cols=188  Identities=21%  Similarity=0.340  Sum_probs=140.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA   85 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a   85 (297)
                      +|+|||+|.||.+||..|+++|++|++||+++++++.+           .+.|.             ...++.++ +++|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~~a   56 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-----------LAAGA-------------VTAETARQVTEQA   56 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------cccCCHHHHHhcC
Confidence            59999999999999999999999999999999887665           33343             12334444 7899


Q ss_pred             cEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCC-------Ccce
Q 022407           86 DIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL-------MKLV  153 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v  153 (297)
                      |+||+|+|++..++..++.  .+.+.++++++|+. +|+.++   +++.+.+...    +.||+++|-.       .+.+
T Consensus        57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l  131 (291)
T TIGR01505        57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTL  131 (291)
T ss_pred             CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCE
Confidence            9999999998877766553  25566677777773 334433   3566555321    4555554421       1235


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .++.+  ++++++++++++++.+|++++++++ .++   +++|+++...    ++|++.++++.+++++++..++..+.+
T Consensus       132 ~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       132 SIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            66666  6789999999999999999999975 455   4888888754    899999999999999999999986654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.87  E-value=1.4e-20  Score=165.31  Aligned_cols=189  Identities=20%  Similarity=0.325  Sum_probs=141.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|++.|++|++||+++++.+.+           .+.|.             ...+++++ +++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~   58 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-----------IAAGA-------------ETASTAKAVAEQ   58 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhc
Confidence            589999999999999999999999999999999877654           23332             34555655 789


Q ss_pred             CcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCC-------cc
Q 022407           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      ||+||+|+|++.+++..++.  .+.+.++++++|+ ++|+.++   +++++.+..    .+.||+++|-..       +.
T Consensus        59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~  133 (296)
T PRK11559         59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGT  133 (296)
T ss_pred             CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCc
Confidence            99999999988877665543  3666677888777 3444443   355555432    255666665222       33


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +.++.+  ++++++++++++++.+|+.++++++ .+|+   ++|+++..    +++|++.++++.++++++++.+++.+.
T Consensus       134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~  211 (296)
T PRK11559        134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL  211 (296)
T ss_pred             EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence            566665  6789999999999999999998865 4555   57777654    589999999998899999999988665


Q ss_pred             C
Q 022407          225 N  225 (297)
Q Consensus       225 g  225 (297)
                      +
T Consensus       212 ~  212 (296)
T PRK11559        212 A  212 (296)
T ss_pred             c
Confidence            4

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.87  E-value=1e-20  Score=158.81  Aligned_cols=192  Identities=20%  Similarity=0.286  Sum_probs=146.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++||+||+|.||++|+.+|.++||.|++|||+.++.+.+           .+.|.             ++.+++.+ ++
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeVae   90 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEVAE   90 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHHHh
Confidence            4789999999999999999999999999999999988776           66665             46667777 88


Q ss_pred             CCcEEEEecccCHHHHHHHHHH---HHhhccCCeE-EeecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------Cc
Q 022407           84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAI-LASNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------MK  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~i-i~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~~  151 (297)
                      +||+||.++|+..+++..++..   +....+.... |.++|+.... .+|++.....    +..|++.|--       .+
T Consensus        91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G  166 (327)
T KOG0409|consen   91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG  166 (327)
T ss_pred             hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence            9999999999999998888775   3333344444 5666665554 5777765322    3344454411       12


Q ss_pred             ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+.++.+  ++++.++++.++|+.+||++++++.. .|   .++|+++...    +.|++.+.+.-+.|+..+-.++..|
T Consensus       167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G  244 (327)
T KOG0409|consen  167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG  244 (327)
T ss_pred             eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            3566666  89999999999999999999998653 33   4888887643    6799999998888998888888776


Q ss_pred             cCC
Q 022407          224 TNQ  226 (297)
Q Consensus       224 ~g~  226 (297)
                      ..|
T Consensus       245 ~~~  247 (327)
T KOG0409|consen  245 RCW  247 (327)
T ss_pred             Ccc
Confidence            655

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.82  E-value=6.1e-18  Score=147.21  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=117.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||+|.||.++|..|.++|++|++||++++.++.+           .+.|...           ...++.+.+++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~a   58 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-----------IERGLVD-----------EASTDLSLLKDC   58 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------cccCCHhHhcCC
Confidence            379999999999999999999999999999999887765           3334321           123344457899


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC------------Ccce
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL------------MKLV  153 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~v  153 (297)
                      |+||+|+|.+..  ..+++++.+.++++++|. +++++....+........++++.||+.++..            ....
T Consensus        59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         59 DLVILALPIGLL--LPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence            999999997653  457788888888887775 5566665545444344457999999875532            1234


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      .++++..++++.++.+.++++.+|.++++++.
T Consensus       136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~  167 (279)
T PRK07417        136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP  167 (279)
T ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            57788888999999999999999999988754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.81  E-value=2e-18  Score=151.40  Aligned_cols=191  Identities=16%  Similarity=0.198  Sum_probs=132.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|+++||+|++||+++++.+.+           .+.|.             ...++..+ +++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDAL-----------VDKGA-------------TPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------cccCCHHHHHhc
Confidence            489999999999999999999999999999999887765           33332             23445554 789


Q ss_pred             CcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEe
Q 022407           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVI  156 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~  156 (297)
                      ||+||.|+|++..++..+..  .+.+.++++.+++ ++|+.++   .++++.+. +..+++.......+..  .+.+.++
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~  136 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL  136 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence            99999999988776655543  3555566777665 3444444   35555442 2223333222221110  1123355


Q ss_pred             cCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          157 RGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .|  ++++++++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.++++.+++++.+-.++..+
T Consensus       137 ~g--g~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~  209 (296)
T PRK15461        137 AG--GTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT  209 (296)
T ss_pred             EC--CCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            44  78999999999999999999998763 22   36666543    457899999999889998877776644

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.80  E-value=3.7e-18  Score=149.14  Aligned_cols=192  Identities=18%  Similarity=0.230  Sum_probs=129.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA   85 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a   85 (297)
                      ||+|||+|.||.+||.+|.++||+|++||+++. .+.+           .+.|.             ...++..+ ++.|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~-------------~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA-------------VSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC-------------eecCCHHHHHhcC
Confidence            799999999999999999999999999999864 2322           23342             23445555 7899


Q ss_pred             cEEEEecccCHHHHHHHHHH--HHhhccCCeEEe-ecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEecC
Q 022407           86 DIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVIRG  158 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~~~  158 (297)
                      |+||.|+|++..++..++.+  +.+.++++.+++ ++|.++.. .++++.+. +..+++.......+..  .+.+.++.+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~g  136 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVG  136 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEc
Confidence            99999999987776665542  444455666555 33333322 34555442 2334444321111111  112344544


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                        ++++++++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.+.++.+++++.+-.++..+.+
T Consensus       137 --G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~  209 (292)
T PRK15059        137 --GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA  209 (292)
T ss_pred             --CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence              78999999999999999999999773 22   36667664    35789999999988899887777765554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.78  E-value=2.1e-19  Score=143.96  Aligned_cols=153  Identities=20%  Similarity=0.322  Sum_probs=101.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||++||.+|+++||+|++||+++++.+++           .+.|             .+..+++++ ++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~-----------~~~g-------------~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL-----------AEAG-------------AEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH-----------HHTT-------------EEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhh-----------HHhh-------------hhhhhhhhhHhh
Confidence            3689999999999999999999999999999999988776           4444             357778877 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHH--HHhhccCCeEEe-ecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEe
Q 022407           84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVI  156 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~  156 (297)
                      .||+||.|+|++.+++. ++..  +.+.++++.+++ ++|+++.. .++++.+. +..+++.......|..  .+.+.++
T Consensus        57 ~~dvvi~~v~~~~~v~~-v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~  135 (163)
T PF03446_consen   57 QADVVILCVPDDDAVEA-VLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM  135 (163)
T ss_dssp             HBSEEEE-SSSHHHHHH-HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred             cccceEeecccchhhhh-hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence            99999999998777654 4444  666666776665 43433332 35555542 2233333322221111  1123455


Q ss_pred             cCCCChHHHHHHHHHHHHHhCCeEEE-ec
Q 022407          157 RGADTSDETFRATKALAERFGKTVVC-SQ  184 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~~~v~-~~  184 (297)
                      .+  ++++++++++++|+.++.++++ ++
T Consensus       136 ~g--G~~~~~~~~~~~l~~~~~~v~~~~G  162 (163)
T PF03446_consen  136 VG--GDEEAFERVRPLLEAMGKNVYHYVG  162 (163)
T ss_dssp             EE--S-HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred             cc--CCHHHHHHHHHHHHHHhCCceeeeC
Confidence            55  7899999999999999999884 35

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.78  E-value=1.8e-17  Score=145.00  Aligned_cols=185  Identities=22%  Similarity=0.247  Sum_probs=133.1

Q ss_pred             EECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCCcEE
Q 022407           10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSADII   88 (297)
Q Consensus        10 iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~V   88 (297)
                      |||+|.||.+||..|+++||+|++||+++++.+.+           .+.|.             ..++++.+ +++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEA-----------VAAGA-------------QAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHhcCCEE
Confidence            68999999999999999999999999999887765           33332             34555655 7899999


Q ss_pred             EEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCC-------cceeEe
Q 022407           89 VEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KLVEVI  156 (297)
Q Consensus        89 i~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vev~  156 (297)
                      |.|+|.+..+...++  ..+.+.++++.+++. +|++++   .++++.+..    .|.+|.+.|-..       +.+.++
T Consensus        57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~  131 (288)
T TIGR01692        57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM  131 (288)
T ss_pred             EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence            999998776544433  456666677776663 335554   344444321    245555554221       123444


Q ss_pred             cCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407          157 RGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .+  ++++.+++++++|+.+|++++++++ ..|.   ++|+++..    .++|++.++++.+++++++..++..+.|
T Consensus       132 ~g--g~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       132 VG--GVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EC--CCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            44  6789999999999999999999986 3443   77776643    5789999999998999999888886654

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.77  E-value=7.7e-17  Score=139.52  Aligned_cols=152  Identities=20%  Similarity=0.287  Sum_probs=117.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|||+|.||.+|+..|.++|+    +|++| |+++++.+.+           .+.|.             ...++..
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF-----------QSLGV-------------KTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH-----------HHcCC-------------EEeCChH
Confidence            479999999999999999999998    89999 9998876554           33332             3455555


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecC
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~  158 (297)
                      + +++||+||.|++ +. ...+++.++.+.++++.+|+|.+++++.+.+.+..+.. +++..+|..|........ ++.+
T Consensus        57 e~~~~aDvVil~v~-~~-~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK-PQ-VVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC-cH-HHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            5 789999999996 33 36677778877778888888888999998888776543 677777766654444333 5566


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      ..++++.++.++++|+.+|. ++++.+
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e  159 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDE  159 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            67789999999999999999 777643

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.77  E-value=2.3e-17  Score=152.07  Aligned_cols=192  Identities=14%  Similarity=0.194  Sum_probs=131.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+..       ...|.          ..+...+++++ +
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence            357899999999999999999999999999999999887763210       00121          01234556655 4


Q ss_pred             c---CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------C
Q 022407           83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------M  150 (297)
Q Consensus        83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~  150 (297)
                      +   .+|+||.|+|.+..+.. ++..+.+.+.++.|++ ++|+++.. .++++.+.    -.|.||++.|-.       .
T Consensus        68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~----~~Gi~fldapVSGG~~gA~~  142 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA----EKGLLYLGMGVSGGEEGARN  142 (493)
T ss_pred             hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEeCCCcCCHHHhcC
Confidence            3   49999999998887655 4466777776665555 44444333 34554442    124455554411       1


Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCe------EEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc-CCCCHHH
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRILM----PMINEAFFTLYT-GVATKED  215 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~------~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~-g~~~~~~  215 (297)
                      +. .++.|  ++++++++++++|+.++.+      ++++++. .|   .++|+.+.    ..+.|++.++++ .+.++++
T Consensus       143 G~-~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~  219 (493)
T PLN02350        143 GP-SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEE  219 (493)
T ss_pred             CC-eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence            12 46666  8999999999999999964      7888763 23   25555543    467899999988 3789988


Q ss_pred             HHHHH
Q 022407          216 IDAGM  220 (297)
Q Consensus       216 id~a~  220 (297)
                      +-.++
T Consensus       220 l~~vf  224 (493)
T PLN02350        220 LAEVF  224 (493)
T ss_pred             HHHHH
Confidence            88774

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.75  E-value=1.4e-16  Score=140.02  Aligned_cols=186  Identities=17%  Similarity=0.188  Sum_probs=128.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+.+           .+.|.             +..+++++ ++.
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~   56 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-----------GKLGI-------------TARHSLEELVSK   56 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHHh
Confidence            379999999999999999999999999999999877654           33332             34555555 443


Q ss_pred             ---CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCcc-HHHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407           85 ---ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLMK------LV  153 (297)
Q Consensus        85 ---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~~------~v  153 (297)
                         +|+||.|+|.+..++ .++..+.+.++++.+++ ++|++.. ..++++.+..    .+.+|++.|-..+      ..
T Consensus        57 ~~~advVi~~vp~~~~~~-~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~  131 (299)
T PRK12490         57 LEAPRTIWVMVPAGEVTE-SVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGY  131 (299)
T ss_pred             CCCCCEEEEEecCchHHH-HHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCC
Confidence               699999999876544 45567777676666665 3333332 2455555421    1344555441111      11


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCC---eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHH
Q 022407          154 EVIRGADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGV--ATKEDIDAGM  220 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~---~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~--~~~~~id~a~  220 (297)
                      .++.+  ++++++++++++++.+|.   +++++++. .|   .++|+++.    ..+.|++.++++.+  .+++++-.++
T Consensus       132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        132 CLMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             eEEec--CCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            34444  789999999999999997   78888763 22   26666553    45789999999877  7888888888


Q ss_pred             hh
Q 022407          221 KL  222 (297)
Q Consensus       221 ~~  222 (297)
                      ..
T Consensus       210 ~~  211 (299)
T PRK12490        210 RN  211 (299)
T ss_pred             cC
Confidence            74

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.75  E-value=8.2e-17  Score=141.65  Aligned_cols=187  Identities=17%  Similarity=0.210  Sum_probs=129.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+.+           .+.|.             +..+++++ ++ 
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~   56 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEAL-----------AEEGA-------------TGADSLEELVAK   56 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHhh
Confidence            379999999999999999999999999999999887665           33332             34555554 33 


Q ss_pred             --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec-CCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASN-TSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LV  153 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~v  153 (297)
                        ++|+||.++|.+..+ ..++..+...++++.+++.. |++... .++++.+..    .|.+|++.|-..+      ..
T Consensus        57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~  131 (301)
T PRK09599         57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY  131 (301)
T ss_pred             cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence              379999999987554 34556676777766666533 333322 345444421    2345555442111      12


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCC----eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHH
Q 022407          154 EVIRGADTSDETFRATKALAERFGK----TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYT--GVATKEDIDAG  219 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~----~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~--g~~~~~~id~a  219 (297)
                      .++.+  ++++++++++++++.+++    +++++++. .|   .++|+.+.    ..+.|++.++++  .+++++++-.+
T Consensus       132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            35544  799999999999999999    78888773 22   25555443    346899999987  77899999998


Q ss_pred             Hhhc
Q 022407          220 MKLG  223 (297)
Q Consensus       220 ~~~g  223 (297)
                      ++.|
T Consensus       210 ~~~~  213 (301)
T PRK09599        210 WRRG  213 (301)
T ss_pred             HhCC
Confidence            8854

>PLN02858 fructose-bisphosphate aldolase

Probab=99.74  E-value=7.9e-17  Score=164.73  Aligned_cols=191  Identities=13%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|||||+|.||.+||.+|+++||+|++||+++++.+.+           .+.|.             ...+++.+ ++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~a~   59 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKF-----------CELGG-------------HRCDSPAEAAK   59 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence            4689999999999999999999999999999999988776           44553             35566666 77


Q ss_pred             CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEE--eecCCCCCCC-------
Q 022407           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIG--MHFMNPPPLM-------  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g--~h~~~p~~~~-------  150 (297)
                      +||+||.|+|++..++..++.  .+.+.++++.+++ ++|.++.. .++++.+..    .|  .+|++.|-..       
T Consensus        60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~  135 (1378)
T PLN02858         60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN  135 (1378)
T ss_pred             cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence            899999999999887766653  3555555666554 44444333 456555432    23  4455554211       


Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCeEEEe-ccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHh
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCS-QDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~-~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +.+.++.|  ++++++++++++|+.+|++++++ ++. .|   .++|+++.    ..+.||+.+.++.+++++.+-.++.
T Consensus       136 G~L~imvG--G~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~  213 (1378)
T PLN02858        136 GKLMIIAS--GRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS  213 (1378)
T ss_pred             CCeEEEEc--CCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            22445555  78999999999999999998865 542 23   37777765    3578999999998899999988888


Q ss_pred             hccC
Q 022407          222 LGTN  225 (297)
Q Consensus       222 ~g~g  225 (297)
                      .+.|
T Consensus       214 ~s~g  217 (1378)
T PLN02858        214 NAAG  217 (1378)
T ss_pred             cCCc
Confidence            7665

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.73  E-value=4.7e-16  Score=136.55  Aligned_cols=190  Identities=16%  Similarity=0.168  Sum_probs=128.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD----   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----   81 (297)
                      |+|+|||+|.||..||..|+++|++|.+||+++++.+.+           .+.|..             ...++++    
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l-----------~~~g~~-------------~~~s~~~~~~~   56 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAM-----------KEDRTT-------------GVANLRELSQR   56 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCc-------------ccCCHHHHHhh
Confidence            379999999999999999999999999999999987766           333321             1223222    


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhc-CCCCeEEEeecCCCCC--CCcceeEe
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASAT-SRPCQVIGMHFMNPPP--LMKLVEVI  156 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~-~~~~~~~g~h~~~p~~--~~~~vev~  156 (297)
                      +..+|+||.|+|.+ . .+.++.++.+.++++.+++..+++.+  ..++...+ ....+++..+....+.  ..+ .-++
T Consensus        57 ~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~  133 (298)
T TIGR00872        57 LSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFM  133 (298)
T ss_pred             cCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-Ceee
Confidence            45789999999987 4 56677888888877777765544432  23444433 2223444433332221  112 2344


Q ss_pred             cCCCChHHHHHHHHHHHHHhCC---eEEEeccc-hh---hhHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHhhc
Q 022407          157 RGADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRIL-M---PMINEAFFTLYTG--VATKEDIDAGMKLG  223 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~---~~v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~~g--~~~~~~id~a~~~g  223 (297)
                      .+  +++++++.++++|+.++.   ..+++++. .|   .++++.+ .   ..+.|++.++++.  ..+.+++-.+++.|
T Consensus       134 ~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g  211 (298)
T TIGR00872       134 IG--GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRG  211 (298)
T ss_pred             eC--CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCC
Confidence            44  789999999999999986   46788763 22   2444443 3   4578999999884  36899999998876


Q ss_pred             c
Q 022407          224 T  224 (297)
Q Consensus       224 ~  224 (297)
                      .
T Consensus       212 ~  212 (298)
T TIGR00872       212 S  212 (298)
T ss_pred             c
Confidence            4

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.73  E-value=5.5e-16  Score=142.14  Aligned_cols=203  Identities=18%  Similarity=0.178  Sum_probs=132.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |+|+|||+|.||.++|..|+++||+|++||+++++++.+.+...    ..++.+..+.        ...+++++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED   72 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence            47999999999999999999999999999999998877532110    0001111000        01234567777776


Q ss_pred             -ccCCcEEEEecccCHH--------HHHHHHHHHHhhccCCeEEeecCCCccH---HHHhh-hcCC------C-CeEEEe
Q 022407           82 -LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLAS-ATSR------P-CQVIGM  141 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-~~~~------~-~~~~g~  141 (297)
                       +++||+||.|+|++..        ....+...+.+.++++++++. +|++++   .++.. .+..      . .-.+..
T Consensus        73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~  151 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY  151 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence             8899999999998642        244556677777777776653 334433   23432 2111      0 111222


Q ss_pred             ecCCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhC-CeEEEeccch-h---hhHHHHH----HHHHHHHH
Q 022407          142 HFMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDYA-G---FIVNRIL----MPMINEAF  203 (297)
Q Consensus       142 h~~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG-~~~v~~~d~~-g---~i~nri~----~~~~~Ea~  203 (297)
                      +   |....+         ...++.|  .+++.+++++++++.++ ..++++++.. +   .++++++    .+++||++
T Consensus       152 ~---Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~  226 (411)
T TIGR03026       152 N---PEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELA  226 (411)
T ss_pred             C---CCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   222111         1145666  68999999999999998 5777776532 1   3555555    57899999


Q ss_pred             HHHHcCCCCHHHHHHHHhh
Q 022407          204 FTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~~  222 (297)
                      .+++.-+++++++-.++..
T Consensus       227 ~la~~~GiD~~~v~~~~~~  245 (411)
T TIGR03026       227 RICEALGIDVYEVIEAAGT  245 (411)
T ss_pred             HHHHHhCCCHHHHHHHhCC
Confidence            9999988999998877753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.72  E-value=5.5e-16  Score=142.88  Aligned_cols=191  Identities=14%  Similarity=0.192  Sum_probs=132.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      .+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+...       ..|.           .+..++++++ ++ 
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~~   63 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVNS   63 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHhc
Confidence            47999999999999999999999999999999999877632110       1121           1335566665 43 


Q ss_pred             --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK------LV  153 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~------~v  153 (297)
                        .+|+||.+++....+ ..++.++.+.++++.||+..+++.+.  ......+.    -.|.||++.|-..+      ..
T Consensus        64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~  138 (470)
T PTZ00142         64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP  138 (470)
T ss_pred             CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence              589999999876664 45667888888877777655554433  23333331    23566666552211      12


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCe------EEEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHH
Q 022407          154 EVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDA  218 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~------~v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~  218 (297)
                      .++.|  ++++++++++++|+.++.+      ..++++. .|   .++++.+ .   ..+.|++.+++ ..+.+++++-.
T Consensus       139 ~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~  216 (470)
T PTZ00142        139 SLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSE  216 (470)
T ss_pred             EEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence            46666  7999999999999999987      6788763 33   2444443 2   56789999997 46678888877


Q ss_pred             HHh
Q 022407          219 GMK  221 (297)
Q Consensus       219 a~~  221 (297)
                      ++.
T Consensus       217 v~~  219 (470)
T PTZ00142        217 VFN  219 (470)
T ss_pred             HHH
Confidence            763

>PLN02858 fructose-bisphosphate aldolase

Probab=99.71  E-value=3.4e-16  Score=160.12  Aligned_cols=193  Identities=18%  Similarity=0.214  Sum_probs=135.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||.+|+++||+|++||+++++.+.+           .+.|.             ...++.++ ++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~~~  379 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRF-----------ENAGG-------------LAGNSPAEVAK  379 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence            3789999999999999999999999999999999887765           33443             23455555 78


Q ss_pred             CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------Ccc
Q 022407           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------MKL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~~~  152 (297)
                      +||+||.|+|++.+++..++.  .+.+.++++.+++ ++|.++.. .++++.+..  .-.|.+|++.|-.       .+.
T Consensus       380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~  457 (1378)
T PLN02858        380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGT  457 (1378)
T ss_pred             cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCC
Confidence            999999999988877666654  2444555555554 44444333 355554421  0124455554411       112


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +.++.+  ++++.+++++++|+.+|++++++.+.+|     .++|+++.    ..++|++.++++.+++++.+-.++..+
T Consensus       458 L~imvg--G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s  535 (1378)
T PLN02858        458 LTIMAS--GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNA  535 (1378)
T ss_pred             ceEEEE--CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence            445554  6889999999999999998887543333     36777664    457899999999889999988877766


Q ss_pred             cC
Q 022407          224 TN  225 (297)
Q Consensus       224 ~g  225 (297)
                      .|
T Consensus       536 ~g  537 (1378)
T PLN02858        536 GG  537 (1378)
T ss_pred             cc
Confidence            54

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.71  E-value=1.9e-15  Score=130.84  Aligned_cols=189  Identities=19%  Similarity=0.226  Sum_probs=130.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +++|+|||+|.||..++..|.++|   ++|.+||+++++.+.+.+.          .|             +...++.++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence            358999999999999999999999   7899999998876654211          12             123445554


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce-eEecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ev~~~~  159 (297)
                       +.+||+||.|+|...  ..++++++.+.+  +.+|+|.+++++.+.+...++...+++..||..|......+ .++++.
T Consensus        59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence             788999999997443  556777777665  46788888999988888887766788999998776444433 456777


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEEeccc-hh--h-hH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 022407          160 DTSDETFRATKALAERFGKTVVCSQDY-AG--F-IV---NRILMPMINEAFFTLYTGVATKEDIDAGM  220 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g--~-i~---nri~~~~~~Ea~~l~~~g~~~~~~id~a~  220 (297)
                      .++++.++.++.+|+.+|..+++..+. ..  . +.   -.+++.++........+.+.++++....+
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~  202 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA  202 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            789999999999999999855443221 11  1 11   12223344444444444446766644433

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.70  E-value=1.3e-15  Score=137.78  Aligned_cols=197  Identities=16%  Similarity=0.197  Sum_probs=122.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS----SIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.+..    .++++..+          ...+++.+.+.++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~   69 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNE   69 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhh
Confidence            379999999999999988875 99999999999999887553321    11111111          1234555665555


Q ss_pred             -ccCCcEEEEecccCHH---------HHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC
Q 022407           82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL  149 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~  149 (297)
                       +++||+||+|+|++.+         ....+.+.+.+. +++.+++ .+|..+.. +++...+..  .  ++.| +|...
T Consensus        70 ~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~~--~--~v~~-~PE~l  143 (388)
T PRK15057         70 AYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYRT--E--NIIF-SPEFL  143 (388)
T ss_pred             hhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhhc--C--cEEE-Ccccc
Confidence             7899999999998732         223445666664 5555544 44444433 355544321  1  2222 44332


Q ss_pred             Ccc-e--------eEecCCCChHHHHHHHHHHHHH--hCCeEE-Eeccc-hh---hhHHHHH----HHHHHHHHHHHHcC
Q 022407          150 MKL-V--------EVIRGADTSDETFRATKALAER--FGKTVV-CSQDY-AG---FIVNRIL----MPMINEAFFTLYTG  209 (297)
Q Consensus       150 ~~~-v--------ev~~~~~~~~~~~~~~~~l~~~--lG~~~v-~~~d~-~g---~i~nri~----~~~~~Ea~~l~~~g  209 (297)
                      .+. .        .++.|  ++++..+++.+++..  ++..+. ++.+. .+   .++++.+    .+++||+..++++-
T Consensus       144 ~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~  221 (388)
T PRK15057        144 REGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL  221 (388)
T ss_pred             cCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221 1        35555  345667778888754  555433 45543 22   2555554    46899999999998


Q ss_pred             CCCHHHHHHHHh
Q 022407          210 VATKEDIDAGMK  221 (297)
Q Consensus       210 ~~~~~~id~a~~  221 (297)
                      +++.+++-.++.
T Consensus       222 GiD~~eV~~a~~  233 (388)
T PRK15057        222 GLNTRQIIEGVC  233 (388)
T ss_pred             CcCHHHHHHHhc
Confidence            899998887763

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=6.5e-15  Score=127.31  Aligned_cols=152  Identities=20%  Similarity=0.283  Sum_probs=120.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+          +.|             +...++..+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcC-------------cEEeCCcHH
Confidence            479999999999999999999885    69999999987765411          122             134455555


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~~  159 (297)
                       +++||+||.|++.  .....+++++.+.++++++++|...+++++.+.+.++...+++...|..|..+...+. +..+.
T Consensus        60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence             7899999999984  4466788888888888899999999999999999887656788888887775554443 45667


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEE
Q 022407          160 DTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      ..+++..+.++.+|..+|...+.
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~~~  160 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTEVV  160 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEE
Confidence            77888899999999999997544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.70  E-value=5.3e-15  Score=135.32  Aligned_cols=200  Identities=15%  Similarity=0.137  Sum_probs=128.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRCT   76 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      ++||+|||+|.||.++|..|+++||+|++||+++++++.+...        +...+.+.++.|            ++..+
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~   70 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT   70 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence            4799999999999999999999999999999999988864311        111111112222            33444


Q ss_pred             cCcccccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCC-CCe--E-----
Q 022407           77 SNLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR-PCQ--V-----  138 (297)
Q Consensus        77 ~~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~-~~~--~-----  138 (297)
                      ++   +++||+||.|+|.+.        .....+.+.+.+.++++++++ .+|.++.. +++...+.. ...  +     
T Consensus        71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g  147 (415)
T PRK11064         71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAG  147 (415)
T ss_pred             cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccccc
Confidence            43   358999999999852        334456677888888877665 44444433 334332211 000  0     


Q ss_pred             --EEeec-CCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHH----HHH
Q 022407          139 --IGMHF-MNPPPLMK---------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRIL----MPM  198 (297)
Q Consensus       139 --~g~h~-~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~----~~~  198 (297)
                        ...++ ++|-.+.+         ..-++.+  .+++.+++++++++.++..++++++. .+   .++++.+    .++
T Consensus       148 ~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~  225 (415)
T PRK11064        148 EQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAF  225 (415)
T ss_pred             CCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence              00111 23322221         1234433  48899999999999999887777652 12   3555554    368


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHh
Q 022407          199 INEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +||++.++++.+++++++-.++.
T Consensus       226 ~nE~~~lae~~GiD~~~v~~~~~  248 (415)
T PRK11064        226 ANELSLICADQGINVWELIRLAN  248 (415)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHhc
Confidence            99999999998899888876654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=2.2e-15  Score=131.21  Aligned_cols=191  Identities=13%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .+||+|||+|.||.+|+..|.++|    ++|+++||+++ +++.+.          .+.|             ++..++.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~----------~~~g-------------~~~~~~~   59 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH----------QKYG-------------VKGTHNK   59 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHH----------HhcC-------------ceEeCCH
Confidence            369999999999999999999998    79999999764 444431          1112             1344555


Q ss_pred             cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc-ceeEec
Q 022407           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIR  157 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vev~~  157 (297)
                      .+ +++||+||.|++.+.  ...++.++.+.++++++|++..++++++.+.+.++...++++.+|..|..... +.-+++
T Consensus        60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence            55 689999999998544  44566788777778888888888999988888776556789998876554433 344456


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccch-----hh--hHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhh
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYA-----GF--IVNRILMPMINEAFF-TLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~-----g~--i~nri~~~~~~Ea~~-l~~~g~~~~~~id~a~~~  222 (297)
                      +...+++.++.++++|+.+|...+ +.+..     +.  -...+ ...+.|++. ...+.+.+.++...++..
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~~  208 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLILQ  208 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            666778999999999999999654 22210     00  00111 233344443 455555777776665543

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.69  E-value=1.5e-14  Score=125.82  Aligned_cols=152  Identities=20%  Similarity=0.256  Sum_probs=107.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|.++|+  +|++||+++++.+.+           .+.|..            ....+.+++.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-----------~~~g~~------------~~~~~~~~~~   57 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-----------LELGLV------------DEIVSFEELK   57 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-----------HHCCCC------------cccCCHHHHh
Confidence            379999999999999999999996  788999999876654           333431            1123444555


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-HH-HHhhhcCCCCeEEEeecCCC-----C-CC------
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-IT-RLASATSRPCQVIGMHFMNP-----P-PL------  149 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p-----~-~~------  149 (297)
                      +||+||.|+|.+.  ..+++.++.+ ++++++|++.+|+.. +. .+.+.  .+.++++.||+.+     | ..      
T Consensus        58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~  132 (275)
T PRK08507         58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE  132 (275)
T ss_pred             cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC
Confidence            6999999998655  4457777877 777887775444322 22 22222  2357999999843     2 11      


Q ss_pred             CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      ...+.+++...++++.++.+.++++.+|.+++++..
T Consensus       133 g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        133 GKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            123456666667889999999999999999998854

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.69  E-value=2e-16  Score=153.50  Aligned_cols=105  Identities=23%  Similarity=0.412  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHH
Q 022407          166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDV  241 (297)
Q Consensus       166 ~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~  241 (297)
                      .+.+..++..+++.+..+.+.+|+|+||++.+++||+++++++|+ ++++|||.++..|+|||.   |||+++|.+|++.
T Consensus       624 ~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~  703 (737)
T TIGR02441       624 NSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADK  703 (737)
T ss_pred             CHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHH
Confidence            344566777788777655678999999999999999999999999 699999999999999997   9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCcHHHHHHHHc-C
Q 022407          242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDA-G  271 (297)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  271 (297)
                      +...++.++..+++ +|+|+++|++|+++ |
T Consensus       704 v~~~~~~l~~~~g~-~~~p~~lL~~~~~~~g  733 (737)
T TIGR02441       704 LVDKMEKYAAAYGV-QFTPCQLLLDHAKSPG  733 (737)
T ss_pred             HHHHHHHHHHHhCC-CcCCCHHHHHHHHhcC
Confidence            99999999999996 89999999999986 5

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.69  E-value=1.5e-15  Score=137.08  Aligned_cols=140  Identities=19%  Similarity=0.283  Sum_probs=109.3

Q ss_pred             CCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-c
Q 022407            4 KMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-D   81 (297)
Q Consensus         4 ~~~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (297)
                      .+++|+||| +|.||.++|..|.++|++|++||+++..                                     +.+ .
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~-------------------------------------~~~~~  139 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD-------------------------------------RAEDI  139 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch-------------------------------------hHHHH
Confidence            357999998 9999999999999999999999986310                                     111 2


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCCCccee--Eec
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLMKLVE--VIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve--v~~  157 (297)
                      +++||+||+|+|++.  ...++.++.+ ++++++|+.++|.  .++..+.+...  .+|+|.||+.+|....+..  ++.
T Consensus       140 ~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~  214 (374)
T PRK11199        140 LADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVV  214 (374)
T ss_pred             HhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEE
Confidence            568999999999876  4677888888 8899999887764  34466666543  3699999999886554322  444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      .+.++++.++++.++++.+|.++++++.
T Consensus       215 ~~~~~~~~~~~~~~l~~~lG~~v~~~~~  242 (374)
T PRK11199        215 CDGRQPEAYQWLLEQIQVWGARLHRISA  242 (374)
T ss_pred             cCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence            5567888999999999999999998853

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.68  E-value=8.4e-15  Score=131.82  Aligned_cols=167  Identities=20%  Similarity=0.219  Sum_probs=116.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.+||..|.++|++|.+|+++++..+....         ...+...           ...+++++ +++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998876443210         1112110           12344444 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCC------------
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------  149 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------  149 (297)
                      ||+||+|+|.+.  ...++.++.+ .++++++|...+|.-  ..+.+...+....++++.||+.....            
T Consensus        61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            999999999753  6688888887 367787776443332  22455554455678999999765421            


Q ss_pred             CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhhhHHHH
Q 022407          150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGFIVNRI  194 (297)
Q Consensus       150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~i~nri  194 (297)
                      ....-++++..++++.++.+.++++.+|..++++.. ....++..+
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~v  184 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALV  184 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHh
Confidence            112456777778999999999999999999987743 333344433

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.7e-14  Score=126.11  Aligned_cols=201  Identities=15%  Similarity=0.174  Sum_probs=138.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH--------HHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS--------SSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      .+|+|||+|.+|.++|..++++|++|..+|+++.+++.+.....        ..+...++            .++++.++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence            78999999999999999999999999999999999887643221        11222233            35578999


Q ss_pred             CcccccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEE-eecCCCccH-HHHhhh-------cCCCCeEEE
Q 022407           78 NLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAIL-ASNTSSISI-TRLASA-------TSRPCQVIG  140 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii-~s~ts~~~~-~~l~~~-------~~~~~~~~g  140 (297)
                      +.++++.||++|.|||...        .......+.|.+.++++.++ .-+|+.+.. +++...       +..+..|.-
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            9999999999999999754        33445556688888777655 455554443 333322       222333322


Q ss_pred             eecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccch-h---h----hHHHHHHHHHHHHH
Q 022407          141 MHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---F----IVNRILMPMINEAF  203 (297)
Q Consensus       141 ~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~-g---~----i~nri~~~~~~Ea~  203 (297)
                      .  +.|-+..+.         ..|+.|  .+|+..+.+..+++.+-+..+.+.+.. .   .    +...+..++.||..
T Consensus       158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla  233 (436)
T COG0677         158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA  233 (436)
T ss_pred             e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            2  244444431         335555  688999999999999877766665532 1   2    44455579999999


Q ss_pred             HHHHcCCCCH-HHHHHHHhh
Q 022407          204 FTLYTGVATK-EDIDAGMKL  222 (297)
Q Consensus       204 ~l~~~g~~~~-~~id~a~~~  222 (297)
                      .++++-+++. +-|+.|-++
T Consensus       234 li~~~~GIdvwevIeaAnt~  253 (436)
T COG0677         234 LICNAMGIDVWEVIEAANTK  253 (436)
T ss_pred             HHHHHhCCcHHHHHHHhccC
Confidence            9999877884 557777665

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.66  E-value=2.2e-14  Score=127.33  Aligned_cols=190  Identities=17%  Similarity=0.179  Sum_probs=129.4

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM   65 (297)
Q Consensus         6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      +||.|.|+|+.                    |.+||.+|+++||+|++||++++.++..      ..+.+.+.|      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~------~~~~l~~~G------   68 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEE------LWKKVEDAG------   68 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHH------HHHHHHHCC------
Confidence            47889998863                    8889999999999999999998865431      111223334      


Q ss_pred             hcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH----HHhhhcCCCCeEEE
Q 022407           66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG  140 (297)
Q Consensus        66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g  140 (297)
                             ++++++..+ +++||+||.|+|.... .+.++..+.+.++++++|+ ++|+.++.    .+.+.+..+.+.++
T Consensus        69 -------i~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~g  139 (342)
T PRK12557         69 -------VKVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVG  139 (342)
T ss_pred             -------CEEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccC
Confidence                   245556554 7899999999997653 4567778888888888777 44454543    34455544445667


Q ss_pred             eecCCCCCC----CcceeEecCC------CChHHHHHHHHHHHHHhCCeEEEeccchhh---hHHHHHH----HHHHHHH
Q 022407          141 MHFMNPPPL----MKLVEVIRGA------DTSDETFRATKALAERFGKTVVCSQDYAGF---IVNRILM----PMINEAF  203 (297)
Q Consensus       141 ~h~~~p~~~----~~~vev~~~~------~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---i~nri~~----~~~~Ea~  203 (297)
                      .++++|..+    ....+++.+.      .++++.+++++++++.+|+++++++...+.   .+|+++.    ....|++
T Consensus       140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~  219 (342)
T PRK12557        140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYY  219 (342)
T ss_pred             eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777765432    1234555442      348899999999999999999887643332   4555554    3457888


Q ss_pred             HHHHcCCCCHHHH
Q 022407          204 FTLYTGVATKEDI  216 (297)
Q Consensus       204 ~l~~~g~~~~~~i  216 (297)
                      .+.++-+.++.+.
T Consensus       220 ~l~~~~~~~p~~~  232 (342)
T PRK12557        220 SVGTKIIKAPKEM  232 (342)
T ss_pred             HHHHHhCCCHHHH
Confidence            8887766666554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.66  E-value=6e-14  Score=123.89  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=112.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .+++|+|||+|.||..+|..|.++|+  +|++||+++++.+.+           .+.|...           ...++.++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-----------~~~g~~~-----------~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-----------RELGLGD-----------RVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-----------HhCCCCc-----------eecCCHHH
Confidence            35799999999999999999999995  899999999876654           2233210           12334443


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCCc------
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLMK------  151 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~~------  151 (297)
                       +++||+||.|+|...  ...++.++.+.++++++|... ++...   +.+...++...++++.||+.++...+      
T Consensus        63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~  139 (307)
T PRK07502         63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA  139 (307)
T ss_pred             HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence             789999999998644  456777787788888776543 33332   34444444455899999987643211      


Q ss_pred             ------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          152 ------LVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       152 ------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                            .+.+++..+++++.++.+.++++.+|.+++++.
T Consensus       140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                  134566667889999999999999999998874

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.65  E-value=1.3e-14  Score=132.73  Aligned_cols=201  Identities=10%  Similarity=0.132  Sum_probs=127.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..+||+|||+|.||.++|..|++ ||+|++||+++++++.+.+...    ..++.+.+            ..++.++++.
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~------------~g~l~~t~~~   71 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELRE------------ARYLKFTSEI   71 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHh------------hCCeeEEeCH
Confidence            45799999999999999999887 6999999999999888632111    01111111            1346677777


Q ss_pred             ccccCCcEEEEecccCH------HHH--HHHHHHHHhhccCCeEEe-ecCCCccHH-HH-hhhcCC--C----CeEEEee
Q 022407           80 KDLHSADIIVEAIVESE------DVK--KKLFSELDKITKASAILA-SNTSSISIT-RL-ASATSR--P----CQVIGMH  142 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~------~~k--~~~~~~l~~~~~~~~ii~-s~ts~~~~~-~l-~~~~~~--~----~~~~g~h  142 (297)
                      +.+++||++|.|||++.      ++.  ....+.|.+.++++.+++ .+|..+..+ ++ ...+..  .    ..+.-. 
T Consensus        72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~-  150 (425)
T PRK15182         72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVG-  150 (425)
T ss_pred             HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEe-
Confidence            77899999999999773      212  222345777777666554 444444332 22 122111  1    111111 


Q ss_pred             cCCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhC-CeEEEeccc-hh---hhHHHHH----HHHHHHHHH
Q 022407          143 FMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDY-AG---FIVNRIL----MPMINEAFF  204 (297)
Q Consensus       143 ~~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG-~~~v~~~d~-~g---~i~nri~----~~~~~Ea~~  204 (297)
                       ++|..+.+         ...++.|  .+++..+.+..+++.+. ..++++.+. .+   .++++++    .+++||++.
T Consensus       151 -~~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~  227 (425)
T PRK15182        151 -YSPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI  227 (425)
T ss_pred             -eCCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23332221         2235665  45788899999999985 345555542 22   3666665    468999999


Q ss_pred             HHHcCCCCHHHHHHHHh
Q 022407          205 TLYTGVATKEDIDAGMK  221 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~  221 (297)
                      ++++-++|+.++-.++.
T Consensus       228 lae~~GiD~~~v~~a~~  244 (425)
T PRK15182        228 IFNRLNIDTEAVLRAAG  244 (425)
T ss_pred             HHHHhCcCHHHHHHHhc
Confidence            99998899888877654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=2e-14  Score=126.07  Aligned_cols=200  Identities=19%  Similarity=0.273  Sum_probs=136.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||.|.+|...|.+|++.||+|+.+|+++++++.+.+..    +..++.+++++.        ..+|+++++|+++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~--------~~gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL--------ASGRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc--------ccCcEEEEcCHHH
Confidence            5899999999999999999999999999999999999876643    344555555433        2356899999997


Q ss_pred             -ccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhc----CCCCeEEEe----
Q 022407           82 -LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI---TRLASAT----SRPCQVIGM----  141 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~----~~~~~~~g~----  141 (297)
                       ++++|++|.|++++.        .....+.+++.++.+..++++ +-|++|+   +.+....    ..+.--+.+    
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence             899999999998743        345667778888888866555 4566665   2333222    111000111    


Q ss_pred             --------ecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHh--CCeEEEeccch-h----hhHHHHHH---HHHHHHH
Q 022407          142 --------HFMNPPPLMKLVEVIRGADTSDETFRATKALAERF--GKTVVCSQDYA-G----FIVNRILM---PMINEAF  203 (297)
Q Consensus       142 --------h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~l--G~~~v~~~d~~-g----~i~nri~~---~~~~Ea~  203 (297)
                              .|++|.+      ++.|.. ++.+.+.++++++.+  ...|++..+.. .    +..|.+++   +++||..
T Consensus       152 LREG~Av~D~~~PdR------IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia  224 (414)
T COG1004         152 LREGSAVYDFLYPDR------IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA  224 (414)
T ss_pred             hcCcchhhhccCCCe------EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1233332      555532 333566666676654  44555544432 2    46666664   6899999


Q ss_pred             HHHHcCCCCHHHHHHHHh
Q 022407          204 FTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       204 ~l~~~g~~~~~~id~a~~  221 (297)
                      .+++.-+++.++|-.++-
T Consensus       225 ~ice~~g~D~~~V~~gIG  242 (414)
T COG1004         225 NICEKVGADVKQVAEGIG  242 (414)
T ss_pred             HHHHHhCCCHHHHHHHcC
Confidence            999998899999887763

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.64  E-value=1.4e-14  Score=133.60  Aligned_cols=188  Identities=17%  Similarity=0.190  Sum_probs=126.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----c
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD----L   82 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~   82 (297)
                      +|+|||+|.||.+||.+|+++||+|++||+++++.+.+.           +.+..        ...+...+++++    +
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~-----------~~~~~--------g~~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-----------AEHAK--------GKKIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH-----------hhccC--------CCCceecCCHHHHHhhc
Confidence            489999999999999999999999999999999887662           22000        001223444444    3


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCCc------cee
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK------LVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~------~ve  154 (297)
                      +.+|+||.|+|.+..+ ..++.++.+.++++.+|+..+++.+.  ....+.+.    -.|.||++.|-..+      ...
T Consensus        62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~----~~gi~fvdapVsGG~~gA~~G~~  136 (467)
T TIGR00873        62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELK----AKGILFVGSGVSGGEEGARKGPS  136 (467)
T ss_pred             CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHH----hcCCEEEcCCCCCCHHHHhcCCc
Confidence            5689999999987665 45667888888777766644443332  23333332    12456665542111      123


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeE------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHHH
Q 022407          155 VIRGADTSDETFRATKALAERFGKTV------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDAG  219 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~------v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~a  219 (297)
                      ++.|  ++++++++++++|+.++.++      .++++. .|   .++++.+ .   ..+.|++.+++ ..+.+++++-.+
T Consensus       137 im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v  214 (467)
T TIGR00873       137 IMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV  214 (467)
T ss_pred             CCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            4544  89999999999999999874      677653 33   2455544 2   45789999985 466788888777


Q ss_pred             H
Q 022407          220 M  220 (297)
Q Consensus       220 ~  220 (297)
                      +
T Consensus       215 ~  215 (467)
T TIGR00873       215 F  215 (467)
T ss_pred             H
Confidence            7

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.64  E-value=6.5e-14  Score=128.85  Aligned_cols=155  Identities=18%  Similarity=0.269  Sum_probs=116.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |+|+||| +|.||.++|..|..+|++|++||++++......          .+.|.             ..+++.++ +.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a----------~~~gv-------------~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA----------KELGV-------------EYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH----------HHcCC-------------eeccCHHHHhc
Confidence            4899997 799999999999999999999999987643321          11221             34445544 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCC----CcceeEec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPL----MKLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~----~~~vev~~  157 (297)
                      +||+||.|+|.+.  ...++.++.+.++++++|++.+|.  .+.+.+.+.++...++++.||+..|..    ...+.+++
T Consensus        58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            9999999998643  457788888888889988866653  344666666655578999999865532    22355677


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      +..++++.++.+.++++.+|.+++++..
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~  163 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTSP  163 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence            7778899999999999999999987743

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.62  E-value=1.7e-14  Score=128.52  Aligned_cols=197  Identities=20%  Similarity=0.219  Sum_probs=126.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +||+|||+|.||+.+|..|+++|++|++||++++.++.+.+           .+..... ........+...++.++ ++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEALA   70 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence            58999999999999999999999999999999988776532           1110000 00001123455666664 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCC-----Cc
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL-----MK  151 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~-----~~  151 (297)
                      +||+||.|+|..  ....++.++.+.+++++++++.++++.+       +.+.+..+.....   .++..|..     .+
T Consensus        71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~---~~~~~P~~~~~~~~g  145 (325)
T PRK00094         71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI---AVLSGPSFAKEVARG  145 (325)
T ss_pred             CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce---EEEECccHHHHHHcC
Confidence            999999999973  3667778888888888887766655554       2223322210011   11222211     11


Q ss_pred             --ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh---------------------hHHHH----HHHHHHHHHH
Q 022407          152 --LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVNRI----LMPMINEAFF  204 (297)
Q Consensus       152 --~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---------------------i~nri----~~~~~~Ea~~  204 (297)
                        ...++.  +.+.+.++++.++|+..|..+++..|..|.                     +.++.    ....++|++.
T Consensus       146 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~  223 (325)
T PRK00094        146 LPTAVVIA--STDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR  223 (325)
T ss_pred             CCcEEEEE--eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence              112222  357889999999999999888776664431                     12222    2356789999


Q ss_pred             HHHcCCCCHHHHHHHH
Q 022407          205 TLYTGVATKEDIDAGM  220 (297)
Q Consensus       205 l~~~g~~~~~~id~a~  220 (297)
                      +++.-+++++.+....
T Consensus       224 la~~~G~d~~~~~~~~  239 (325)
T PRK00094        224 LGVALGANPETFLGLA  239 (325)
T ss_pred             HHHHhCCChhhhhccc
Confidence            9988777887775543

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.59  E-value=6.1e-15  Score=143.22  Aligned_cols=86  Identities=33%  Similarity=0.562  Sum_probs=81.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022407          186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC  261 (297)
Q Consensus       186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~  261 (297)
                      .+|+++||++.+++|||++++++|+ ++++|||.+++.|+|||+   |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus       614 ~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p~  692 (708)
T PRK11154        614 SANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTPC  692 (708)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCCC
Confidence            5789999999999999999999998 899999999999999997   999999999999999999999999988 89999


Q ss_pred             HHHHHHHHcCC
Q 022407          262 PLLVQYVDAGR  272 (297)
Q Consensus       262 ~~l~~~~~~g~  272 (297)
                      ++|++|+++|.
T Consensus       693 ~~l~~~~~~~~  703 (708)
T PRK11154        693 ERLVEMAERGE  703 (708)
T ss_pred             HHHHHHHHcCC
Confidence            99999999863

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.58  E-value=9.1e-13  Score=118.16  Aligned_cols=166  Identities=17%  Similarity=0.179  Sum_probs=108.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||..+|..|+++||+|++||+++. .+.+           .+.|...    ..+......++..+++.+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDEL-----------RAHGLTLTDYRGRDVRVPPSAIAFSTDPAA   70 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHH-----------HhcCceeecCCCcceecccceeEeccChhh
Confidence            5899999999999999999999999999998643 2222           2222110    0011111234555666666


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeecCC----CCCCCc---ce
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN----PPPLMK---LV  153 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~----p~~~~~---~v  153 (297)
                      ++++|+||.|++...  ..++++++.+.++++++|++.++++.. +.+.+.++....+.+.+++.    .|....   .-
T Consensus        71 ~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g  148 (341)
T PRK08229         71 LATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSG  148 (341)
T ss_pred             ccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCC
Confidence            889999999998654  467788888888888988888888875 55666664333334434321    221100   11


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      ++..+.   .+.++++.++|+..|.++.+.+|..+
T Consensus       149 ~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~  180 (341)
T PRK08229        149 ALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA  180 (341)
T ss_pred             ceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence            222221   24568889999999999988888654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.58  E-value=1e-14  Score=141.43  Aligned_cols=86  Identities=34%  Similarity=0.549  Sum_probs=81.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022407          186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC  261 (297)
Q Consensus       186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~  261 (297)
                      .+|+++||++.+++|||++++++|+ ++++|||.+++.|+|||.   |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus       607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~-~~~p~  685 (699)
T TIGR02440       607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD-RFTPC  685 (699)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CcCCC
Confidence            5789999999999999999999998 899999999999999996   999999999999999999999999987 89999


Q ss_pred             HHHHHHHHcCC
Q 022407          262 PLLVQYVDAGR  272 (297)
Q Consensus       262 ~~l~~~~~~g~  272 (297)
                      ++|.+|+++|.
T Consensus       686 ~~L~~~~~~~~  696 (699)
T TIGR02440       686 QRLVAMAAEKQ  696 (699)
T ss_pred             HHHHHHHHcCC
Confidence            99999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.57  E-value=2e-13  Score=117.55  Aligned_cols=156  Identities=24%  Similarity=0.289  Sum_probs=115.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC--cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN--LK   80 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~   80 (297)
                      .++|+|+|+|.||.++|..+..+|+.|.+++++...  .+.+           .+.|...           ..+.+  ..
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence            468999999999999999999999999777665543  3332           3334321           12223  34


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCC-CC-----cc
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPP-LM-----KL  152 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~-~~-----~~  152 (297)
                      .+++||+||.|+|  ......+++++.+.+++++++...+|.-.  ++.+.+..+...++++.||+..|+ ..     ..
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            4788999999998  44466888999988999999986666543  355655554323899999998772 11     23


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +-++++..++++.++.++.+++.+|.+++++.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~  170 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD  170 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            55677777889999999999999999998874

>PLN02256 arogenate dehydrogenase

Probab=99.56  E-value=1.9e-13  Score=119.69  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=111.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..++|+|||+|.||.++|..|.+.|++|++||+++.. +.+           .+.|.             ...++.++ +
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~~~~~~e~~   89 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIA-----------AELGV-------------SFFRDPDDFC   89 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHH-----------HHcCC-------------eeeCCHHHHh
Confidence            3479999999999999999999999999999998632 211           12222             23445554 3


Q ss_pred             -cCCcEEEEecccCHHHHHHHHHHH-HhhccCCeEEeecCC--CccHHHHhhhcCCCCeEEEeecCCCCCCCcc----ee
Q 022407           83 -HSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTS--SISITRLASATSRPCQVIGMHFMNPPPLMKL----VE  154 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~----ve  154 (297)
                       .++|+||.|+|..  ...+++.++ ...++++++|++.+|  +...+.+.+.++...++++.||+.++.....    ..
T Consensus        90 ~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~  167 (304)
T PLN02256         90 EEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP  167 (304)
T ss_pred             hCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence             4699999999854  346677777 466778888887666  4555677777655568999999988864311    11


Q ss_pred             E--ec----CCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          155 V--IR----GADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 v--~~----~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +  .+    ...++++.++.+.++++.+|.+++.+.
T Consensus       168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            1  11    145688899999999999999998774

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.56  E-value=5.9e-13  Score=123.00  Aligned_cols=204  Identities=12%  Similarity=0.168  Sum_probs=129.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+|+|||+|.+|..+|..|+++  |++|+++|+++++++.+++..    +..++.++.++         ...++++++++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~   72 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV   72 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence            6899999999999999999988  478999999999988864332    11122221111         12357889988


Q ss_pred             cc-ccCCcEEEEecccCH-------------HHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCC---CCeE-E
Q 022407           80 KD-LHSADIIVEAIVESE-------------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR---PCQV-I  139 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~---~~~~-~  139 (297)
                      ++ +++||++|.|||.+.             .-...+.++|.++++++.+|+ .+|..+.. +.+...+..   ...| +
T Consensus        73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence            75 899999999996443             245567777888888777655 44433333 334332211   1111 1


Q ss_pred             EeecCCCCCCCc---------ceeEe-cCC--CChHHHHHHHHHHHHHhCC-eEEEeccch--h---hhHHHH---HHHH
Q 022407          140 GMHFMNPPPLMK---------LVEVI-RGA--DTSDETFRATKALAERFGK-TVVCSQDYA--G---FIVNRI---LMPM  198 (297)
Q Consensus       140 g~h~~~p~~~~~---------~vev~-~~~--~~~~~~~~~~~~l~~~lG~-~~v~~~d~~--g---~i~nri---~~~~  198 (297)
                      +   ++|-.+.+         ...|+ .+.  ...+++.+.+..++..+-+ .++.+.+..  .   ++.|.+   ..++
T Consensus       153 ~---~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf  229 (473)
T PLN02353        153 L---SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS  229 (473)
T ss_pred             E---ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence            1   23332221         12354 332  1225678889999998753 444443321  1   233333   2588


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHh
Q 022407          199 INEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +||...++++-+++..++-.++.
T Consensus       230 ~NEla~lce~~giD~~eV~~~~~  252 (473)
T PLN02353        230 VNAMSALCEATGADVSQVSHAVG  252 (473)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHhC
Confidence            99999999998899988877765

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.55  E-value=9.9e-14  Score=123.68  Aligned_cols=196  Identities=17%  Similarity=0.151  Sum_probs=121.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+||+|||+|.||.+||..|+++||+|++|++++++.+.+.+...        .+...+  ......++..++++++ ++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~--------~~~~~~--g~~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERE--------NREYLP--GVALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCc--------ccccCC--CCcCCCCeEEeCCHHHHHc
Confidence            468999999999999999999999999999999887766532110        010000  0011123556667665 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-----HHHHhhhcCC--CCeEEEeecCCCCCCC------
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-----ITRLASATSR--PCQVIGMHFMNPPPLM------  150 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~l~~~~~~--~~~~~g~h~~~p~~~~------  150 (297)
                      ++|+||+|+|+..  .++++    +.++++.++++.+.++.     ...+++.+..  ..++.   +...|...      
T Consensus        74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~---~~~gP~~a~~~~~~  144 (328)
T PRK14618         74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA---VLSGPNHAEEIARF  144 (328)
T ss_pred             CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE---EEECccHHHHHHcC
Confidence            9999999999764  23343    34456666665566554     3344444321  01111   12222111      


Q ss_pred             -cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh---------------------hHH----HHHHHHHHHHHH
Q 022407          151 -KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVN----RILMPMINEAFF  204 (297)
Q Consensus       151 -~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---------------------i~n----ri~~~~~~Ea~~  204 (297)
                       +...++.+  ++++.+++++++|+..+.++++..|..|.                     +.+    .++...++|+..
T Consensus       145 ~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~  222 (328)
T PRK14618        145 LPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVR  222 (328)
T ss_pred             CCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence             12333433  68899999999999999888765443321                     112    223456789999


Q ss_pred             HHHcCCCCHHHHHHHHh
Q 022407          205 TLYTGVATKEDIDAGMK  221 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~  221 (297)
                      +++.-+++++.+.....
T Consensus       223 la~~~G~~~~~~~~~~~  239 (328)
T PRK14618        223 FGVALGAEEATFYGLSG  239 (328)
T ss_pred             HHHHhCCCccchhcCcc
Confidence            99887788887766544

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.55  E-value=1.3e-12  Score=113.46  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=114.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ++|+|||+|.||.+++..|.++|    ++|.+|+++.+ +.+..           ....           .....+.+..
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l-----------~~~~-----------~~~~~~~~~~   59 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQL-----------YDKY-----------PTVELADNEA   59 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHH-----------HHHc-----------CCeEEeCCHH
Confidence            57999999999999999999998    78999998653 22222           1110           0123445555


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecC
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~  158 (297)
                      + ++++|+||.|+|.  ....+++.++.+.++++.+|+|.+.+++..++.+.++. .+++.+.|..|..+...+. +..+
T Consensus        60 e~~~~aDvVilavpp--~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~  136 (277)
T PRK06928         60 EIFTKCDHSFICVPP--LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHA  136 (277)
T ss_pred             HHHhhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecC
Confidence            4 7899999999984  33567888888888788888889999999999988753 4788888877765544443 4455


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEE
Q 022407          159 ADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      ...+++..+.++.+|..+|+..++
T Consensus       137 ~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        137 ETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEEE
Confidence            667888999999999999998765

>PRK07680 late competence protein ComER; Validated

Probab=99.54  E-value=1.3e-12  Score=113.53  Aligned_cols=151  Identities=17%  Similarity=0.236  Sum_probs=107.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|.||..++..|.++|+    +|.+|||++++.+.+.           +..           ..+....+..+
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~-----------~~~-----------~g~~~~~~~~~   58 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIK-----------ERY-----------PGIHVAKTIEE   58 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHH-----------HHc-----------CCeEEECCHHH
Confidence            379999999999999999999994    7999999988765541           110           01244555555


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC-CcceeEecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-MKLVEVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-~~~vev~~~~  159 (297)
                       +.++|+||.|++...  ...+++++.++++++.+|++.+++++.+.+.+.++  .+++..++..|... .+..-++.+.
T Consensus        59 ~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~  134 (273)
T PRK07680         59 VISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS  134 (273)
T ss_pred             HHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence             789999999997333  56677888888877888888888898888888765  23444444322111 1223344555


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEE
Q 022407          160 DTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      ..+++..+.++++|..+|....+
T Consensus       135 ~~~~~~~~~~~~ll~~~G~~~~i  157 (273)
T PRK07680        135 RCSEEDQQKLERLFSNISTPLVI  157 (273)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEE
Confidence            56778889999999999965444

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.54  E-value=1.6e-12  Score=110.52  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=120.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+|+||.+|+..|.++|    .+|++.++++++.+.+.          .+.|.             ..+++.++
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~----------~~~g~-------------~~~~~~~~   58 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALA----------AEYGV-------------VTTTDNQE   58 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHH----------HHcCC-------------cccCcHHH
Confidence            68999999999999999999999    68999999999876431          12221             12444444


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce-eEecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ev~~~~  159 (297)
                       +..+|+||.|+.  +....+++.++.. ..++.+|+|...+++++.+...++ ..+++...|..|..+...+ -+..+.
T Consensus        59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~  134 (266)
T COG0345          59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA  134 (266)
T ss_pred             HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence             788999999994  5556778888887 678889999999999999999998 6788888888777555444 455667


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEEe
Q 022407          160 DTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      ..+++..+.+..+|+.+|...++-
T Consensus       135 ~~~~~~~~~v~~l~~~~G~v~~v~  158 (266)
T COG0345         135 NVSEEDKAFVEALLSAVGKVVEVE  158 (266)
T ss_pred             cCCHHHHHHHHHHHHhcCCeEEec
Confidence            789999999999999999987764

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.54  E-value=7.6e-13  Score=113.15  Aligned_cols=155  Identities=15%  Similarity=0.214  Sum_probs=113.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL---D-VWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      |+. .+||+|||+|.||.+++..|+++|+   + ++++++ ++++.+.+.+          ..+             +..
T Consensus         1 ~m~-~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~   56 (245)
T PRK07634          1 MLK-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VST   56 (245)
T ss_pred             CCC-CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEE
Confidence            554 3689999999999999999998873   3 677887 4555544311          111             234


Q ss_pred             ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-e
Q 022407           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-V  153 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-v  153 (297)
                      +++.++ ++++|+||.|+|...  ..+++.++.+..+ +.+|+|.+.+++++.+.+.++...+++..||..|..+... .
T Consensus        57 ~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~  133 (245)
T PRK07634         57 TTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSIS  133 (245)
T ss_pred             eCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCe
Confidence            455555 789999999998654  4677788877665 4688889999999999988876567777887655433322 2


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEE
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      -+......+++..+.++.+|..+|..+++
T Consensus       134 ~~~~~~~~~~~~~~~v~~lf~~~G~~~~~  162 (245)
T PRK07634        134 LYTMGQSVNETHKETLQLILKGIGTSQLC  162 (245)
T ss_pred             EEeeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            33455667899999999999999999875

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.53  E-value=1.4e-12  Score=112.45  Aligned_cols=180  Identities=12%  Similarity=0.143  Sum_probs=121.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +|+|||+|.||.+|+..|.++|++   +.++++++++.+.+.           +..           ......++.++ +
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~-----------~~~-----------~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLA-----------ERF-----------PKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHH-----------HHc-----------CCceEeCCHHHHH
Confidence            799999999999999999999865   578999988766542           111           01234556555 6


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||.|++. .. ...++.++.  ..++.++++...+++.+.+.+.++...+++..+|..|......+..+..  . 
T Consensus        60 ~~aDvVilav~p-~~-~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~--~-  132 (258)
T PRK06476         60 DRSDVVFLAVRP-QI-AEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP--P-  132 (258)
T ss_pred             HhCCEEEEEeCH-HH-HHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC--C-
Confidence            889999999983 32 456666652  4567788888889999999988765556777777765543333333322  1 


Q ss_pred             HHHHHHHHHHHHHhCCeEEEeccc--h------hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 022407          163 DETFRATKALAERFGKTVVCSQDY--A------GFIVNRILMPMINEAFFTLYTGVATKEDIDAGM  220 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~d~--~------g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~  220 (297)
                         .+.++++|+.+|..+++..+.  .      +...+ + +.++.++..+.++.+.++++...++
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~-~~~~~~~~~~~~~~Gl~~~~a~~~~  193 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-Y-FGILETATGWLEEQGLKRQKARAYL  193 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-H-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               257899999999988754221  1      12222 2 2466777777777677877655544

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.51  E-value=1.9e-12  Score=113.65  Aligned_cols=184  Identities=19%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|..|..+|++|.+++++.++....          ..+.|.             ... +.++ ++.
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~----------A~~~G~-------------~~~-s~~eaa~~   73 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKK----------AEADGF-------------EVL-TVAEAAKW   73 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHH----------HHHCCC-------------eeC-CHHHHHhc
Confidence            689999999999999999999999999998875433221          022231             233 4444 889


Q ss_pred             CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC-------CCcce-eE
Q 022407           85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-------LMKLV-EV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-------~~~~v-ev  155 (297)
                      ||+|+.++|....  ..++ +++.+.+++++++ +-.+++++.......+...+++-..|..|.+       ....+ -+
T Consensus        74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l  150 (330)
T PRK05479         74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL  150 (330)
T ss_pred             CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence            9999999996554  5666 7788888888887 5677888877766555556778777877775       22222 23


Q ss_pred             e-cCCCChHHHHHHHHHHHHHhCCeEE-----Eec-cc-h---h--hhHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 022407          156 I-RGADTSDETFRATKALAERFGKTVV-----CSQ-DY-A---G--FIVNRILMPMINEAFFTLYTGVATKEDI  216 (297)
Q Consensus       156 ~-~~~~~~~~~~~~~~~l~~~lG~~~v-----~~~-d~-~---g--~i~nri~~~~~~Ea~~l~~~g~~~~~~i  216 (297)
                      + .....+.+..+.+..+++.+|..+.     ..+ +. .   |  .+.-.-+..++..++..+.+.+.+|+..
T Consensus       151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A  224 (330)
T PRK05479        151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA  224 (330)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            3 3444568889999999999998764     112 11 1   1  1333334577888888887766777654

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.49  E-value=8.2e-13  Score=121.50  Aligned_cols=179  Identities=17%  Similarity=0.211  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEEecCccc-cc---CCcEEEE
Q 022407           16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRCTSNLKD-LH---SADIIVE   90 (297)
Q Consensus        16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~-~~---~aD~Vi~   90 (297)
                      ||..||.+|+++||+|.+|||++++.+.+           .+. |.         ...++..+++++ ++   .+|+||.
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l-----------~~~~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~   60 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEF-----------LAEEGK---------GKKIVPAYTLEEFVASLEKPRKILL   60 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHH-----------HHhhCC---------CCCeEeeCCHHHHHhhCCCCCEEEE
Confidence            89999999999999999999999988876           221 21         012356677776 43   4899999


Q ss_pred             ecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc------ceeEecCCCCh
Q 022407           91 AIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LVEVIRGADTS  162 (297)
Q Consensus        91 ~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~vev~~~~~~~  162 (297)
                      |+|.+..+.. ++..+.+.+.++.||+ .+|+.... ...++.+.    -.|.||++.|-..+      ...++.|  ++
T Consensus        61 mv~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~----~~Gi~fvdapVSGG~~gA~~G~siM~G--G~  133 (459)
T PRK09287         61 MVKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELA----EKGIHFIGMGVSGGEEGALHGPSIMPG--GQ  133 (459)
T ss_pred             ECCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCeEEecCCCCCHHHHhcCCEEEEe--CC
Confidence            9998877654 5567777777666555 33343332 34444432    13556666552111      1256655  79


Q ss_pred             HHHHHHHHHHHHHhCCeE-------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHHc-CCCCHHHHHHHHh
Q 022407          163 DETFRATKALAERFGKTV-------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLYT-GVATKEDIDAGMK  221 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~-------v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~~-g~~~~~~id~a~~  221 (297)
                      ++++++++++|+.++.++       .++++. .|   .++++.+ +   ..+.|++.++++ .+.+++++-.++.
T Consensus       134 ~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        134 KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999886       788763 33   2455544 3   467899999994 5688888877763

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.49  E-value=9.3e-12  Score=122.51  Aligned_cols=158  Identities=22%  Similarity=0.233  Sum_probs=115.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .+++|+|||+|.||.+++..|.++|  ++|++||+++++++.+           .+.|...           ...++.++
T Consensus         2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~   59 (735)
T PRK14806          2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-----------VSLGVID-----------RGEEDLAE   59 (735)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-----------HHCCCCC-----------cccCCHHH
Confidence            3578999999999999999999999  4899999998876654           2333210           12234444


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcC-CCCeEEEeecCCCCCCC-------
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS-RPCQVIGMHFMNPPPLM-------  150 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~-~~~~~~g~h~~~p~~~~-------  150 (297)
                       ++++|+||+|+|..  ....+++++.++++++++|...++.-  ..+.+.+.+. ...|+++.||+..+...       
T Consensus        60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~  137 (735)
T PRK14806         60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA  137 (735)
T ss_pred             HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence             78999999999864  46788888888888887765433322  2455655543 25689999997644321       


Q ss_pred             -----cceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          151 -----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       151 -----~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                           +.+.++++..++++.++.+.++++.+|..++++.+
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~  177 (735)
T PRK14806        138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDV  177 (735)
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 23466777778999999999999999998888743

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.47  E-value=5.6e-13  Score=117.72  Aligned_cols=168  Identities=17%  Similarity=0.180  Sum_probs=110.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+||+|||+|.||++||..|+.+||+|++|+|++.                                     +++++ ++
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~   46 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLA   46 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHh
Confidence            46899999999999999999999999999999752                                     12223 56


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCccHH------H-HhhhcCCCCeEEEeecCCCCCC------
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISIT------R-LASATSRPCQVIGMHFMNPPPL------  149 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~------~-l~~~~~~~~~~~g~h~~~p~~~------  149 (297)
                      ++|+||.++|.+  ..+.++..+.++ +++++++++.+.++++.      + +...+.. .++..  +..|...      
T Consensus        47 ~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~  121 (308)
T PRK14619         47 DADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQG  121 (308)
T ss_pred             cCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcC
Confidence            899999999974  356677888764 67788888777655542      1 1112211 12221  1122110      


Q ss_pred             CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-h--------------------hHHHH----HHHHHHHHHH
Q 022407          150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-F--------------------IVNRI----LMPMINEAFF  204 (297)
Q Consensus       150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-~--------------------i~nri----~~~~~~Ea~~  204 (297)
                      .+...++.  +.+++.++.++++|...+.++++..|..| .                    +.++.    +...++|+..
T Consensus       122 ~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~  199 (308)
T PRK14619        122 LPAATVVA--SRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR  199 (308)
T ss_pred             CCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            01222333  36889999999999999998887766433 1                    22222    2345689999


Q ss_pred             HHHcCCCCHHHH
Q 022407          205 TLYTGVATKEDI  216 (297)
Q Consensus       205 l~~~g~~~~~~i  216 (297)
                      +++.-+.+++.+
T Consensus       200 l~~~~G~~~~t~  211 (308)
T PRK14619        200 VGTHLGAQTETF  211 (308)
T ss_pred             HHHHhCCCcccc
Confidence            988866666554

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.46  E-value=2.9e-11  Score=104.03  Aligned_cols=158  Identities=21%  Similarity=0.200  Sum_probs=103.7

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM   65 (297)
Q Consensus         6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      |||.|.|+|+.                    |++||.+|+++||+|++||+++++.+..      ..+.+.+.|.     
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e------~~e~LaeaGA-----   69 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDD------LWKKVEDAGV-----   69 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhh------hhHHHHHCCC-----
Confidence            47889998863                    8899999999999999999998765321      0112244453     


Q ss_pred             hcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhh----cCCC---Ce
Q 022407           66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA----TSRP---CQ  137 (297)
Q Consensus        66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~----~~~~---~~  137 (297)
                              ..+++..+ +++||+||.|+|++..++. ++..+.+.++++++++ ++||+++..+...    +...   ..
T Consensus        70 --------~~AaS~aEAAa~ADVVIL~LPd~aaV~e-Vl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~  139 (341)
T TIGR01724        70 --------KVVSDDKEAAKHGEIHVLFTPFGKGTFS-IARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVG  139 (341)
T ss_pred             --------eecCCHHHHHhCCCEEEEecCCHHHHHH-HHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccC
Confidence                    34555555 8899999999997776554 4566777778888776 4566666443332    2222   23


Q ss_pred             EEEeecCCCCCCCcc-eeEecC------CCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          138 VIGMHFMNPPPLMKL-VEVIRG------ADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       138 ~~g~h~~~p~~~~~~-vev~~~------~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +..+||-.-|..-.- .-++.+      .-.+++.++++..+.+..++.++.+.
T Consensus       140 v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~p  193 (341)
T TIGR01724       140 ISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVP  193 (341)
T ss_pred             eeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            444555433321111 112222      22578999999999999999998763

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.46  E-value=1.3e-11  Score=106.43  Aligned_cols=145  Identities=14%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||.+|+..|.++|.    +++++|+++++.                 +             +....+..+
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~-------------~~~~~~~~~   53 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P-------------FVYLQSNEE   53 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C-------------eEEeCChHH
Confidence            589999999999999999999873    499999876431                 0             123334444


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-eeEecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vev~~~~  159 (297)
                       +++||+||.|++  +.....++.++.++.++ .+|+|...+++.+.+...++...+++...|..|...... .-+.++.
T Consensus        54 ~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~  130 (260)
T PTZ00431         54 LAKTCDIIVLAVK--PDLAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN  130 (260)
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence             678999999986  44466788888877765 466788899999888887765445666666656544333 4455666


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEEe
Q 022407          160 DTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      ..+++..+.++.+|+.+|...++-
T Consensus       131 ~~~~~~~~~v~~l~~~~G~~~~v~  154 (260)
T PTZ00431        131 NVDSTDKKKVIDIFSACGIIQEIK  154 (260)
T ss_pred             CCCHHHHHHHHHHHHhCCcEEEEC
Confidence            678888999999999999987663

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.45  E-value=2.4e-14  Score=131.21  Aligned_cols=158  Identities=15%  Similarity=0.249  Sum_probs=116.4

Q ss_pred             cEEEEECCChhHHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQ--LG----VMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.||.+++.  .+    +.+|++|.+||+++++++.....+++.+...   +         ...+++.++|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~---~---------~~~~I~~ttD~   68 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL---G---------APLKIEATTDR   68 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEeCCH
Confidence            37999999999998666  23    5568899999999999888766665443321   1         12457778887


Q ss_pred             cc-ccCCcEEEEecc----------cCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCC--CCeEEEeecCCC
Q 022407           80 KD-LHSADIIVEAIV----------ESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR--PCQVIGMHFMNP  146 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~~~~g~h~~~p  146 (297)
                      .+ +++||+||++++          ++..+|..+++++.+.+++++++.+++|...+.++++.+..  | +.+.+||.||
T Consensus        69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP  147 (423)
T cd05297          69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP  147 (423)
T ss_pred             HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence            64 899999999998          34678888999999999999999999999988888887753  5 7899999999


Q ss_pred             CCCC-----cce--eEecCCCChHHHHHHHHHHHHHhCCe
Q 022407          147 PPLM-----KLV--EVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~-----~~v--ev~~~~~~~~~~~~~~~~l~~~lG~~  179 (297)
                      +..+     +..  .++..   ..........+.+.+|..
T Consensus       148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~  184 (423)
T cd05297         148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP  184 (423)
T ss_pred             HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence            8644     222  23322   212444455566667764

linked to 3D####ucture

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.45  E-value=4.2e-13  Score=130.51  Aligned_cols=86  Identities=24%  Similarity=0.400  Sum_probs=78.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  263 (297)
                      ..++||++.+++|||++++++|+ ++++|||.+++.|+|||+   |||+++|.+|++.+..+++.+. .+++ +|+|+++
T Consensus       625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~-~~~p~~~  702 (715)
T PRK11730        625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGP-LYQVPEG  702 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCC-CCCCCHH
Confidence            35899999999999999999996 899999999999999987   9999999999999999999765 5665 8999999


Q ss_pred             HHHHHHcCCCCcccCCccc
Q 022407          264 LVQYVDAGRLGKKRGIGVF  282 (297)
Q Consensus       264 l~~~~~~g~~G~~~g~Gfy  282 (297)
                      |++|+++|       ++||
T Consensus       703 L~~~v~~~-------~~f~  714 (715)
T PRK11730        703 LREMAANG-------ESYY  714 (715)
T ss_pred             HHHHHHcC-------CCCC
Confidence            99999876       4686

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.45  E-value=6e-12  Score=105.72  Aligned_cols=163  Identities=16%  Similarity=0.196  Sum_probs=105.9

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      |||+||| +|.||..+|..|+++|++|+++++++++++...+...+.   +...|.         ..++...++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~---------~~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS---------DIKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC---------CceEEEeChHHHHhc
Confidence            4799997 899999999999999999999999998876653322111   111111         011223333345889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-----------------HHHhhhcCCCCeEEEeecCCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------------TRLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      +|+||.|+|...  ...++.++.+.+++ +++++.+.+++.                 +.+++.++...+++......+.
T Consensus        69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            999999998543  45666777666554 677777776654                 3456655433566655332221


Q ss_pred             CC-------CcceeEecCCCChHHHHHHHHHHHHHh-CCeEEEecc
Q 022407          148 PL-------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD  185 (297)
Q Consensus       148 ~~-------~~~vev~~~~~~~~~~~~~~~~l~~~l-G~~~v~~~d  185 (297)
                      ..       .+....+.|  .++++.+.+..+.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence            11       112223444  4577889999999999 999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.44  E-value=5.4e-13  Score=129.50  Aligned_cols=83  Identities=30%  Similarity=0.478  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTG-VATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g-~~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  263 (297)
                      ..++||++.+++||+++++++| +++++|||.++..|+|||.   |||+++|.+|++.+...++.+. .+++ +|+|+++
T Consensus       625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~-~~~p~~~  702 (714)
T TIGR02437       625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGA-LYQVTAK  702 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCC-CCCCCHH
Confidence            4699999999999999999999 7789999999999999997   9999999999999999999654 6775 8999999


Q ss_pred             HHHHHHcCC
Q 022407          264 LVQYVDAGR  272 (297)
Q Consensus       264 l~~~~~~g~  272 (297)
                      |++++++|+
T Consensus       703 l~~~~~~g~  711 (714)
T TIGR02437       703 LREMAKNGQ  711 (714)
T ss_pred             HHHHHHcCC
Confidence            999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.44  E-value=5.4e-13  Score=101.18  Aligned_cols=114  Identities=20%  Similarity=0.297  Sum_probs=76.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ..||+|||+|++|..++..|.++||+|.. |.|+.+..+++...                      .....+. ++++ +
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~-~~~~~~   66 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAIL-DLEEIL   66 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT------TTGGG
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------ccccccc-cccccc
Confidence            36999999999999999999999999885 57877666555211                      1111233 3444 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhh--ccCCeEEeecCCCccHHHHhhhcCCCCeEEEeec
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSISITRLASATSRPCQVIGMHF  143 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~  143 (297)
                      .++|++|.++|++.  ...+.++|.+.  ..++.+++.++.+.+.+.+............+||
T Consensus        67 ~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   67 RDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             CC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             ccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            89999999999886  66788888876  7788999988888888777776666677778885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02712 arogenate dehydrogenase

Probab=99.43  E-value=5.7e-12  Score=121.23  Aligned_cols=153  Identities=18%  Similarity=0.126  Sum_probs=107.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..+|..|.+.|++|.+||++... +.+           .+.|.             ...++.++ +.
T Consensus       369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~~  423 (667)
T PLN02712        369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLCE  423 (667)
T ss_pred             CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHHh
Confidence            479999999999999999999999999999998542 222           22232             24455555 44


Q ss_pred             -CCcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCCC--c---ce-
Q 022407           84 -SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLM--K---LV-  153 (297)
Q Consensus        84 -~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~--~---~v-  153 (297)
                       .+|+||.|+|..  ....++.++.. .+++++++++.+|+  .+.+.+...++...++++.||+.++...  +   .. 
T Consensus       424 ~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~  501 (667)
T PLN02712        424 EHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF  501 (667)
T ss_pred             cCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence             589999999953  34566677664 56788888866665  4456666666555679999999887643  1   11 


Q ss_pred             ----eEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          154 ----EVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       154 ----ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                          -++.+.....+.++.+..++..+|.+++.+.
T Consensus       502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                1122333455666777899999999988763

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.42  E-value=8.5e-13  Score=104.97  Aligned_cols=105  Identities=24%  Similarity=0.426  Sum_probs=78.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA   85 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a   85 (297)
                      ||+|||+|.||.++|..|+.+|++|++|.++++.++.+.+.-        ..-...+  ......++.+++|+++ ++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~--------~n~~~~~--~~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETR--------QNPKYLP--GIKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT--------SETTTST--TSBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC--------CCCCCCC--CcccCcccccccCHHHHhCcc
Confidence            799999999999999999999999999999998777653210        0000000  0122356788899876 8999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      |+||.++|...  .+.+++++.++++++.++++.+.++
T Consensus        71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999766  5789999999999999999888877

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.42  E-value=4.2e-12  Score=110.04  Aligned_cols=165  Identities=22%  Similarity=0.342  Sum_probs=115.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+++|..|+++||+|++|.++++.++.+.+. + ...+++. |.       .....+.+++|+++ +++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~-~N~~yLp-~i-------~lp~~l~at~Dl~~a~~~   71 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-R-ENPKYLP-GI-------LLPPNLKATTDLAEALDG   71 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-C-cCccccC-Cc-------cCCcccccccCHHHHHhc
Confidence            689999999999999999999999999999999988776443 1 1111221 11       22356778889887 778


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH------HH-HhhhcCCCCeEEEeecCCCCCCC-------
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI------TR-LASATSRPCQVIGMHFMNPPPLM-------  150 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~------~~-l~~~~~~~~~~~g~h~~~p~~~~-------  150 (297)
                      ||+|+.++|...  .+.+.+++...+++++++++.+.++..      ++ +.+.++.. .+.   ++..|...       
T Consensus        72 ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~-~~~---vLSGPs~A~EVa~g~  145 (329)
T COG0240          72 ADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN-PIA---VLSGPSFAKEVAQGL  145 (329)
T ss_pred             CCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC-eEE---EEECccHHHHHhcCC
Confidence            999999998654  678888888888999999988887754      23 33333321 221   22333321       


Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      +...++.  ..+++..+.+..+|..--.+++...|..|
T Consensus       146 pta~~va--s~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         146 PTAVVVA--SNDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             CcEEEEe--cCCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            1222333  36888888888888886667777777765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.42  E-value=5.5e-12  Score=112.78  Aligned_cols=137  Identities=20%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      ++|+|||+ |.||.++|..|.+ .|++|+.+|++.+                                   ...+++ .+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------------------------------~~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------------------------------GSLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------------------------------ccCCHHHHh
Confidence            69999999 9999999999986 4899999998521                                   112333 37


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhh---ccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCCcc-----
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKI---TKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLMKL-----  152 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-----  152 (297)
                      ++||+||.|+|...  ...+++++.++   ++++++|...+|.-  +.+.+   .....+|+|.||+..|...++     
T Consensus        50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            89999999998544  56788888776   68898887555433  22333   222357999999988754432     


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +-+++.  ..++.+++++.+++.+|.+++.+.
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence            233443  455567889999999999998774

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.39  E-value=2.6e-12  Score=104.65  Aligned_cols=107  Identities=18%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |||+|||+|.+|..+|..|+++||+|+.+|.++++++.+.+..        ...+.+..+            ..++++++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence            6899999999999999999999999999999999988764321        111221121            35678998


Q ss_pred             Cccc-ccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           78 NLKD-LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +.++ +++||++|.|+|.+.        .....+...|.+.++++.+++ .-|++++
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp  124 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP  124 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence            8887 899999999997643        345667778888888877655 2334443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.37  E-value=1.1e-10  Score=102.73  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=109.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||.++|..|..+|++|+++++. .++.+.+           .+.|.             ...+ ..+ ++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a-----------~~~Gv-------------~~~s-~~ea~~   58 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKA-----------TEDGF-------------KVGT-VEEAIP   58 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHH-----------HHCCC-------------EECC-HHHHHh
Confidence            68999999999999999999999998876654 3333333           22232             2333 444 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC-------Ccce-eE
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-------MKLV-EV  155 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v-ev  155 (297)
                      .||+|+.++|.... ...+.+++.+.++++. ++|-..++++..+...++...+++-..|..|.+.       ...+ .+
T Consensus        59 ~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l  136 (314)
T TIGR00465        59 QADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTL  136 (314)
T ss_pred             cCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEE
Confidence            99999999996533 4566677888777776 5567788898888777765567888889888863       3333 44


Q ss_pred             e-cCCCChHHHHHHHHHHHHHhCCe
Q 022407          156 I-RGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       156 ~-~~~~~~~~~~~~~~~l~~~lG~~  179 (297)
                      + .+...+.+..+.+..+++.+|..
T Consensus       137 ~a~~~~~~~~~~~~~~~~~~~iG~~  161 (314)
T TIGR00465       137 IAVEQDPTGEAMAIALAYAKAIGGG  161 (314)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCC
Confidence            3 56667888899999999999998

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.35  E-value=8.7e-10  Score=97.66  Aligned_cols=179  Identities=14%  Similarity=0.212  Sum_probs=110.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AMGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~   79 (297)
                      |-+..++|+|||+|.||+.+|..|+++|++|+++.|++.  +..           .+.|.... ...+.....+...++.
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~   67 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSA   67 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcch
Confidence            544567999999999999999999999999999999753  222           22231100 0000011113344455


Q ss_pred             ccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--
Q 022407           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM--  150 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~--  150 (297)
                      ++...+|+||.|++...  ..+++..+.+.+.+++++++...++.. +.+.+.++. .+++ +..++     .|..+.  
T Consensus        68 ~~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~  144 (313)
T PRK06249         68 EDMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHL  144 (313)
T ss_pred             hhcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEEC
Confidence            55778999999998554  346778888888888888888888876 456655543 3433 33322     222110  


Q ss_pred             cceeEecC--CCCh-----HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHH
Q 022407          151 KLVEVIRG--ADTS-----DETFRATKALAERFGKTVVCSQDYAGFIVNRIL  195 (297)
Q Consensus       151 ~~vev~~~--~~~~-----~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~  195 (297)
                      ..-.+..|  .+.+     .+..+.+..+|+..|..+.+..|....++..++
T Consensus       145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  196 (313)
T PRK06249        145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV  196 (313)
T ss_pred             CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence            00111111  1122     456677888888889888777777665555554

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.34  E-value=9.6e-11  Score=104.86  Aligned_cols=169  Identities=13%  Similarity=0.122  Sum_probs=110.8

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh--hhhcccCCceEEecCcc
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ--AMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~   80 (297)
                      +..+||+|||+|.||+.+|..|+++| +|++|.++++..+.+.+           .+....  .+......++..+++++
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~   72 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFA   72 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHH
Confidence            34579999999999999999999999 78999999988766532           111000  00011123466777776


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCCC--
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPLM--  150 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~~--  150 (297)
                      + ++++|+||.++|..  ..+.+++++.+.+++++++++.+.++..       +.+.+.++. .++..  ...|-...  
T Consensus        73 ~a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~~a~ev  147 (341)
T PRK12439         73 EAANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPNIAREV  147 (341)
T ss_pred             HHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCCHHHHH
Confidence            5 78999999999843  3677889999988888877777777764       345444432 22211  11221110  


Q ss_pred             --cc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh
Q 022407          151 --KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF  189 (297)
Q Consensus       151 --~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~  189 (297)
                        +. ..++.+. .+++..+.+..+|..-+.+++...|..|.
T Consensus       148 ~~g~~t~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gv  188 (341)
T PRK12439        148 AEGYAAAAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGV  188 (341)
T ss_pred             HcCCCeEEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence              11 1222221 36777888888998888888888887663

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.34  E-value=9.4e-12  Score=110.01  Aligned_cols=126  Identities=20%  Similarity=0.308  Sum_probs=91.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||..+|..++..|+ +|.++|++++.+..-      .++.....      .......+++.++|+++++
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l~   73 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDIA   73 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence            3699999999999999999999996 999999999875321      11111110      0111223566668888899


Q ss_pred             CCcEEEEec-------------------ccCHHHHHHHHHHHHhhccCC-eEEeecCCCccHHHHhhhcCCC-CeEEEee
Q 022407           84 SADIIVEAI-------------------VESEDVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH  142 (297)
Q Consensus        84 ~aD~Vi~~v-------------------~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h  142 (297)
                      +||+||++.                   .++..+++++..++.+++++. .+++||++.+....+.+..+.| .|++|++
T Consensus        74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            999999955                   446667888889999999774 4566888887777777766654 6788775

>PLN02712 arogenate dehydrogenase

Probab=99.32  E-value=9.6e-11  Score=112.84  Aligned_cols=153  Identities=18%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L-   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-   82 (297)
                      .++|+|||+|.||..+|..|.++|++|++||++... +.+           .+.|.             ...++.++ + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~Gv-------------~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLGV-------------SFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcCC-------------EEeCCHHHHhh
Confidence            368999999999999999999999999999998543 222           22232             23455555 3 


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHH-hhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCC-----ccee
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELD-KITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLM-----KLVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~-----~~ve  154 (297)
                      .+||+||.|+|..  ....++.++. +.++++++|+..+|.-  ....+...++....+++.||+..|...     ....
T Consensus       107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            5699999999853  3566777775 5677888877554322  224455555555579999998877521     1122


Q ss_pred             Eec----C-CCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          155 VIR----G-ADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 v~~----~-~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +..    + .....+.++++.++++.+|.+++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            222    1 22234567788899999999998774

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.32  E-value=9.9e-11  Score=104.32  Aligned_cols=170  Identities=15%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCccc-c-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNLKD-L-   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~-~-   82 (297)
                      |||+|||+|.||..+|..|+++|++|++|+|+++.++...+.         ..+.. .+  .......++.+++.++ + 
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~--~~~~~~~i~~~~~~~~~~~   69 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLP--TCHLPDNISVKSAIDEVLS   69 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCC--CCcCCCCeEEeCCHHHHHh
Confidence            379999999999999999999999999999998876655221         00100 00  0011234556666665 4 


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCC-----
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL-----  149 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~-----  149 (297)
                      .++|+||.++|...  ...+++++.+ ++++++.+++.++++..       +.+.+.++.. ++..   +..|..     
T Consensus        70 ~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~---~~Gp~~a~~~~  143 (326)
T PRK14620         70 DNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI---LSGPSFAKEIA  143 (326)
T ss_pred             CCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe---ecCCcHHHHHH
Confidence            58999999998544  5678888887 77777766666766643       3344444321 2211   112210     


Q ss_pred             Ccc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHH
Q 022407          150 MKL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR  193 (297)
Q Consensus       150 ~~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nr  193 (297)
                      .+. ..+.. .+.+.+..+++.++|..-+.++....|..|..+..
T Consensus       144 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k  187 (326)
T PRK14620        144 EKLPCSIVL-AGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGA  187 (326)
T ss_pred             cCCCcEEEE-ecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHH
Confidence            011 11111 12344555666666666666777777776653333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.31  E-value=1.1e-10  Score=102.99  Aligned_cols=169  Identities=17%  Similarity=0.195  Sum_probs=102.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||+|||+|.||..+|..|+++|++|+++++ +++++..           .+.|.................++.++ .+.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-----------RERGLVIRSDHGDAVVPGPVITDPEELTGP   68 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-----------HhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence            4799999999999999999999999999999 7666654           22221100000000001122344555 488


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecCC-----CCCCC--cceeE
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMN-----PPPLM--KLVEV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~-----p~~~~--~~vev  155 (297)
                      +|+||.|++...  ...++.++.+...++++|++.+.++.. +.+...++.. +++ +..++.     |-.+.  ..-.+
T Consensus        69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~~~~~~~~  145 (305)
T PRK12921         69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVVQRADHRL  145 (305)
T ss_pred             CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence            999999998654  456778888888888888777778765 4555555432 333 333322     21111  01112


Q ss_pred             ecC--CCChHHHHHHHHHHHHHhCCeEEEeccchhh
Q 022407          156 IRG--ADTSDETFRATKALAERFGKTVVCSQDYAGF  189 (297)
Q Consensus       156 ~~~--~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~  189 (297)
                      ..|  +....+..+.+..+|...|..+....|....
T Consensus       146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~  181 (305)
T PRK12921        146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQD  181 (305)
T ss_pred             EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHH
Confidence            222  2233456667777888888776666665443

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.31  E-value=8.7e-12  Score=109.71  Aligned_cols=122  Identities=20%  Similarity=0.305  Sum_probs=86.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      |+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+.       .     .......+++.+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~-------~-----~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA-------A-----PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh-------h-----hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 9999999987543221111111       0     0111224566667777899999


Q ss_pred             EEEEec--------------ccCHHHHHHHHHHHHhhccCCeE-EeecCCCccHHHHhhhcCC-CCeEEEe
Q 022407           87 IIVEAI--------------VESEDVKKKLFSELDKITKASAI-LASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        87 ~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      +||+++              +++..+++++++++.++++++.+ +.+|++.+....+.+..+. +.+++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              56778899999999999987774 5577776666666665543 3466664

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.3e-10  Score=93.68  Aligned_cols=188  Identities=19%  Similarity=0.242  Sum_probs=126.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc----c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK----D   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~   81 (297)
                      |+|+.||+|.||.-|+.+|.+.||+|+.||+|++..+.+           ...|.             +.+++++    .
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~-----------~~~ga-------------~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEEL-----------KDEGA-------------TGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HhcCC-------------ccccCHHHHHHh
Confidence            479999999999999999999999999999999988877           44442             2233332    2


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLMK------LV  153 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~~------~v  153 (297)
                      +...-.|-.+||-. ++..+++.++.+.+..+-+|+....+.-  ...-.+.+    .-.++||++.-.-.+      .-
T Consensus        57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~GTSGG~~G~~~G~  131 (300)
T COG1023          57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVGTSGGVWGAERGY  131 (300)
T ss_pred             cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEeccCCCCchhhhcCc
Confidence            45567788888854 2367888999988877666654443332  22222222    224678877542111      12


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCe---EEEecc-chhh----hHHHHH---HHHHHHHHHHHHcCCC--CHHHHHHHH
Q 022407          154 EVIRGADTSDETFRATKALAERFGKT---VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYTGVA--TKEDIDAGM  220 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~---~v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~g~~--~~~~id~a~  220 (297)
                      .++.|  +++++++++.++|+.+...   ..+++. ..|-    +.|-|=   .+.+.|.+.++++.-.  +-+.+.+.+
T Consensus       132 ~lMiG--G~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW  209 (300)
T COG1023         132 CLMIG--GDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW  209 (300)
T ss_pred             eEEec--CcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            34544  6999999999999998653   235544 2342    555553   3567899999998643  466777777


Q ss_pred             hhcc
Q 022407          221 KLGT  224 (297)
Q Consensus       221 ~~g~  224 (297)
                      +.|.
T Consensus       210 ~hGS  213 (300)
T COG1023         210 NHGS  213 (300)
T ss_pred             hCcc
Confidence            7654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.28  E-value=2.6e-10  Score=100.62  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=100.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||..+|..|+++|++|++++++++..+...           +.|... ... ....++...++.++++.+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~-~~~-~~~~~~~~~~~~~~~~~~   67 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRL-EDG-EITVPVLAADDPAELGPQ   67 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcc-cCC-ceeecccCCCChhHcCCC
Confidence            4799999999999999999999999999999887766542           222110 000 001112234444456889


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeec-----CCCCC---CC-cceeE
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHF-----MNPPP---LM-KLVEV  155 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~-----~~p~~---~~-~~vev  155 (297)
                      |+||.+++...  ...+++.+.+.+.++++|++...++.. +.+.+.++...-+.+..+     ..|-.   .. +.+.+
T Consensus        68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~i  145 (304)
T PRK06522         68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKI  145 (304)
T ss_pred             CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEE
Confidence            99999998543  467888888888888777777778765 445554443222222222     11211   01 11112


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      -. ...+.+..+.+.++|...|....+..|..+
T Consensus       146 g~-~~~~~~~~~~l~~~l~~~~~~~~~~~di~~  177 (304)
T PRK06522        146 GE-PDGESAAAEALADLLNAAGLDVEWSPDIRT  177 (304)
T ss_pred             eC-CCCCcHHHHHHHHHHHhcCCCCCCChHHHH
Confidence            11 112223466677778877777666565444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.27  E-value=8.8e-11  Score=95.34  Aligned_cols=154  Identities=20%  Similarity=0.239  Sum_probs=101.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +|+++|+|+|+||.++|.+|+++||+|++-.++. ++.+.+.+.          .+           ..++..+..+.++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~----------l~-----------~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA----------LG-----------PLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh----------hc-----------cccccCChHHHHh
Confidence            3689999999999999999999999999996554 444443211          11           2244555556688


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc----------------H-HHHhhhcCCCCeEE-EeecCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS----------------I-TRLASATSRPCQVI-GMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~----------------~-~~l~~~~~~~~~~~-g~h~~~  145 (297)
                      .||+||.++|-..  ...+.+++..... +.|+++.|..+.                . +.+++.++.. +++ .+|-..
T Consensus        60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~  135 (211)
T COG2085          60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP  135 (211)
T ss_pred             cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence            9999999998444  5677888887766 667766665421                1 2344555443 332 222221


Q ss_pred             CCC------C-CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          146 PPP------L-MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       146 p~~------~-~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      +..      . .+..-.+.|  .+.++.+.+..+.+.+|..++-++.
T Consensus       136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence            111      1 122223444  6888999999999999999998765

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.27  E-value=2.3e-11  Score=107.65  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=90.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||..+|..++..| .+|.++|++++.++...-...+.          .  .......+++.++++++++
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----------~--~~~~~~~~i~~~~d~~~l~   72 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----------S--TLVGSNINILGTNNYEDIK   72 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----------c--cccCCCeEEEeCCCHHHhC
Confidence            369999999999999999999989 69999999987654221111110          0  0011123556667888899


Q ss_pred             CCcEEEEec--ccCH------------HHHHHHHHHHHhhccCC-eEEeecCCCccHHHHhhhcCCC-CeEEEee
Q 022407           84 SADIIVEAI--VESE------------DVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH  142 (297)
Q Consensus        84 ~aD~Vi~~v--~e~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h  142 (297)
                      +||+||++.  ++..            .+++++..++.+++++. .+++||++.+....+.+....| .+++|++
T Consensus        73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            999999998  6655            67888889999998777 4556787777666666655554 6777765

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.26  E-value=3.8e-11  Score=106.12  Aligned_cols=125  Identities=18%  Similarity=0.264  Sum_probs=82.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|||+|.||..+|..++..|+ +|.++|+++++++.....+.+..   .         ......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence            4699999999999999999999876 99999998887543221111110   0         011124566667777799


Q ss_pred             CCcEEEEec--------------ccCHHHHHHHHHHHHhhccCCeE-EeecCCCccHHHHhhhcCC-CCeEEEe
Q 022407           84 SADIIVEAI--------------VESEDVKKKLFSELDKITKASAI-LASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      +||+||+++              .++..++++++.++.+.+++..+ +.+|.+.+-...+.+..+. +.+++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999986              24556788888999998866533 3455544433334333222 2455554

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.25  E-value=4.4e-11  Score=86.99  Aligned_cols=89  Identities=22%  Similarity=0.424  Sum_probs=65.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Cccc
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKD   81 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~   81 (297)
                      ||+|||+|.||.+|+..|.++|   ++|.++ ++++++++++.+.          .+             +.+.. +..+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-------------~~~~~~~~~~   57 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-------------VQATADDNEE   57 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-------------TEEESEEHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-------------cccccCChHH
Confidence            7999999999999999999999   999955 9999988776221          11             12333 4444


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       ++.+|+||.|+|...  ..+++.++ ....++.+++|.+.
T Consensus        58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEEST
T ss_pred             hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCC
Confidence             789999999997544  56788888 55667777776553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.25  E-value=3.7e-10  Score=97.14  Aligned_cols=140  Identities=24%  Similarity=0.313  Sum_probs=100.3

Q ss_pred             HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCcEEEEecccCHH
Q 022407           20 IAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESED   97 (297)
Q Consensus        20 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~~~   97 (297)
                      +|..|.++|  ++|+.+|++++.++.+           .+.|...           ...++.+.+++||+||.|+|-+. 
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP~~~-   57 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVPVSA-   57 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S-HHH-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCCHHH-
Confidence            578889999  7899999999988776           5666543           23333556899999999998544 


Q ss_pred             HHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCC------------cceeEecCCCChH
Q 022407           98 VKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLM------------KLVEVIRGADTSD  163 (297)
Q Consensus        98 ~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~------------~~vev~~~~~~~~  163 (297)
                       ...++.++.++++++++|...+|.-  ....+.+.++...++++.||+..|...            ..+-++++..+++
T Consensus        58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence             6788999999999999887555532  335666666656799999999877321            2366778888889


Q ss_pred             HHHHHHHHHHHHhCCeEEEe
Q 022407          164 ETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~  183 (297)
                      +.++.+..+++.+|.+++.+
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEM  156 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE-
T ss_pred             HHHHHHHHHHHHCCCEEEEc
Confidence            99999999999999998876

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.23  E-value=7.5e-09  Score=90.99  Aligned_cols=167  Identities=15%  Similarity=0.124  Sum_probs=108.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|+|+|.||+.++..|+++|++|+++.|++. +++.           .+.|..-...............+.+....+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l-----------~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEAL-----------KKKGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHH-----------HhCCeEEecCCCccccccccccChhhcCCC
Confidence            5899999999999999999999999999988875 5554           334432111111111122233444457799


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH-HhhhcCCCCeEEEeecCCCCCCCcc---------eeE
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR-LASATSRPCQVIGMHFMNPPPLMKL---------VEV  155 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~~~~g~h~~~p~~~~~~---------vev  155 (297)
                      |+||.++-.  ....++++.+.+.++++++|++...++...+ +....+....+.|+-+.......+.         ..+
T Consensus        69 Dlviv~vKa--~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVKA--YQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEecc--ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            999999843  3366888999999999998888888988754 5555444323445544433222111         112


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~  186 (297)
                      -...+..++.++.+.+.|+..|....+..|.
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di  177 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPDI  177 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHHH
Confidence            2223334577888888888888877766554

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.20  E-value=7.9e-10  Score=98.32  Aligned_cols=163  Identities=20%  Similarity=0.148  Sum_probs=103.8

Q ss_pred             EEEEECCChhHHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCce
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDG--------LDVWLVDT-----DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL   73 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i   73 (297)
                      ||+|||+|.+|.++|..|+.+|        ++|++|.+     +++..+..    ++.    .+.-...+ . -....++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~i----n~~----~~n~~ylp-g-i~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEII----NTT----HENVKYLP-G-IKLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHH----Hhc----CCCccccC-C-CcCCCCe
Confidence            5999999999999999999999        99999998     33332222    111    00000000 0 0123567


Q ss_pred             EEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH---------HHhhhcCCCCeEEEeec
Q 022407           74 RCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---------RLASATSRPCQVIGMHF  143 (297)
Q Consensus        74 ~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---------~l~~~~~~~~~~~g~h~  143 (297)
                      ++++|+++ +++||+||.++|...  .+.++.++.++++++.++++.+.++..+         .+.+.+..  ++.   .
T Consensus        71 ~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~---~  143 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCG---V  143 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeE---E
Confidence            78888876 799999999998655  6678899998888888888888777543         23333322  221   1


Q ss_pred             CCCCCCC-------cceeEecCCCCh----HHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          144 MNPPPLM-------KLVEVIRGADTS----DETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       144 ~~p~~~~-------~~vev~~~~~~~----~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      +..|...       +...++.+  .+    .+..+.++.+|..=-.+++...|..|
T Consensus       144 lsGP~~A~Eva~~~pt~~~ia~--~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G  197 (342)
T TIGR03376       144 LSGANLANEVAKEKFSETTVGY--RDPADFDVDARVLKALFHRPYFRVNVVDDVAG  197 (342)
T ss_pred             eeCcchHHHHHcCCCceEEEEe--CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence            2233221       11223333  34    77788888888765556666677665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.17  E-value=1.4e-09  Score=97.50  Aligned_cols=168  Identities=17%  Similarity=0.165  Sum_probs=105.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEE
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPDA-LVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~   75 (297)
                      .+||+|||+|.||+++|..|+.+|       ++|.+|.++++. -+...+.+++.    .+. ..+..   -....++..
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~   83 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVA   83 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEE
Confidence            469999999999999999999998       899999998762 11111111111    000 00100   123467788


Q ss_pred             ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHh--hccCCeEEeecCCCccH--------H-HHhhhcCCCCeEEEeec
Q 022407           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK--ITKASAILASNTSSISI--------T-RLASATSRPCQVIGMHF  143 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~--------~-~l~~~~~~~~~~~g~h~  143 (297)
                      ++|+++ +++||+||.++|...  .++++.++.+  ..+++++++|.+.++..        + .+.+.++.  ++.   .
T Consensus        84 tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~  156 (365)
T PTZ00345         84 VSDLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---A  156 (365)
T ss_pred             ecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---E
Confidence            888876 899999999998544  7788888887  77777778877766653        2 23333332  221   1


Q ss_pred             CCCCCCC-------cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          144 MNPPPLM-------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       144 ~~p~~~~-------~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      +..|...       +...++.+  .+++..+.+..+|..=-.+++...|..|
T Consensus       157 LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G  206 (365)
T PTZ00345        157 LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG  206 (365)
T ss_pred             EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence            2223211       11222332  4778888888888765666777777655

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=4.1e-09  Score=92.42  Aligned_cols=194  Identities=17%  Similarity=0.207  Sum_probs=129.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD----   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----   81 (297)
                      ..||+||+|.||+-+|.+.+.+||.|.+|+|+.++.+...+          +.+         ...+|..+.++++    
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~----------~~~---------~~k~i~~~~sieefV~~   64 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA----------ERA---------KGKNIVPAYSIEEFVAS   64 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH----------hCc---------cCCCccccCcHHHHHHH
Confidence            57999999999999999999999999999999999887632          111         1123455566654    


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cH-HHHhhhcCCCCeEEEeecCCCCCC-CcceeEec
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SI-TRLASATSRPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~-~~l~~~~~~~~~~~g~h~~~p~~~-~~~vev~~  157 (297)
                      ++..--|+.+|.-. .....++++|.+++.++-||+....+.  +. +...+.....-.|+|+-.-....- .....+|+
T Consensus        65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMp  143 (473)
T COG0362          65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMP  143 (473)
T ss_pred             hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCC
Confidence            45677788887543 224577888889888877776444333  33 222222233456777654322110 11244777


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeE------EEec-cchhh----hHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022407          158 GADTSDETFRATKALAERFGKTV------VCSQ-DYAGF----IVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~------v~~~-d~~g~----i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~  221 (297)
                      |  +++++++.+.++|..+..+.      .+++ +..|.    +.|-|=   ..++.|+..++.++ ..|.++|-..+.
T Consensus       144 G--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~  220 (473)
T COG0362         144 G--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFE  220 (473)
T ss_pred             C--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            6  89999999999999885432      2343 34452    445443   36899999999884 467888877765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.12  E-value=2.9e-09  Score=93.91  Aligned_cols=178  Identities=13%  Similarity=0.018  Sum_probs=107.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|+|+|.||+-+|..|+++|++|++++|+.+.++..++          +.|...........-++. ..+.+....+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g~~~~~~~~-~~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQGQASLYAIP-AETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCCcceeeccC-CCCccccccc
Confidence            68999999999999999999999999999998877766521          112110000000000111 1112235678


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc-------ceeEec
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK-------LVEVIR  157 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~vev~~  157 (297)
                      |+||.|+-..  -....++.+.+++.+++++++...++.. +.+.+.++...-+.+..++..-...+       .-.+..
T Consensus        72 D~viv~vK~~--~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~  149 (305)
T PRK05708         72 HRLLLACKAY--DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL  149 (305)
T ss_pred             CEEEEECCHH--hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence            9999999532  2446778888999999988888889887 45666654332233333332211111       111223


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHH
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMP  197 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~  197 (297)
                      |...+ +..+.+.++|..-|....+..|..+.+++.+++.
T Consensus       150 G~~~~-~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N  188 (305)
T PRK05708        150 GDPRN-PTAPAWLDDLREAGIPHEWTVDILTRLWRKLALN  188 (305)
T ss_pred             cCCCC-cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence            32222 3345666777777777767777777766666543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=99.12  E-value=4e-10  Score=99.07  Aligned_cols=123  Identities=16%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||..+|..++..|+ +|+++|++++..+ ...     ++. .+.+.     ......+++++++++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~-~~~~~-----~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDM-YEASP-----VGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhh-hhhhh-----ccCCCcEEEecCCHHHhCC
Confidence            589999999999999999999887 8999999766432 211     010 11111     1112356777888888999


Q ss_pred             CcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           85 ADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        85 aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      ||+||.++..              +....+.+..++.++.+ +.+++.-|...++  ..+.+..+. +.|++|+
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            9999999862              23445556666777764 4444433443333  333333222 2455554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=99.11  E-value=2.1e-08  Score=83.01  Aligned_cols=158  Identities=20%  Similarity=0.213  Sum_probs=108.4

Q ss_pred             cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407            6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM   65 (297)
Q Consensus         6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   65 (297)
                      +||+|.|+|+.                    |+.||..|+.+||+|.+.|+|.+-.+..      .+++..+.|.     
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV-----   70 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV-----   70 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc-----
Confidence            68999999863                    7889999999999999999988755432      2334344453     


Q ss_pred             hcccCCceEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH----HHhhhcCCCCeEEE
Q 022407           66 GTDAPRRLRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG  140 (297)
Q Consensus        66 ~~~~~~~i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g  140 (297)
                              +.+ +|.+.++.+++.+.-.|=... .-.+.++|.++++++++|+ ||.+.++-    .+...+..+.+-+|
T Consensus        71 --------~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVG  140 (340)
T COG4007          71 --------EVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVG  140 (340)
T ss_pred             --------EEecCchhhhhcceEEEEecccchh-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcC
Confidence                    444 455568999999988775432 4467788999999999987 55555543    44455554444556


Q ss_pred             eecCCCCCCCc----ceeEecCC------CChHHHHHHHHHHHHHhCCeEEEec
Q 022407          141 MHFMNPPPLMK----LVEVIRGA------DTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       141 ~h~~~p~~~~~----~vev~~~~------~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ...+.|..+-+    ..-++.+.      -.+++-++++..+.+..|+.++++.
T Consensus       141 vssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             ccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence            65555543211    12233321      1367889999999999999998764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.02  E-value=6.9e-09  Score=92.21  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|...|++|.+||++++.....                            +...+++++ +++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            589999999999999999999999999999987532110                            013345665 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+..+.+++.+.++++++++..+.+.-+  ..+.+.+... -...++.-|.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~  262 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE  262 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence            99999999998877777777777888999988855544433  5677776532 2334444443

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.98  E-value=2.9e-09  Score=91.96  Aligned_cols=96  Identities=17%  Similarity=0.326  Sum_probs=73.5

Q ss_pred             EEEECC-ChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-cc
Q 022407            8 MGVVGS-GQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-KD   81 (297)
Q Consensus         8 V~iiG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   81 (297)
                      |+|||+ |.||..+|..|+..|    .+|.++|+++++++.....+++.....             ...+++.++|. ++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    799999999988777655544432211             12356667774 56


Q ss_pred             ccCCcEEEE--------------ecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 LHSADIIVE--------------AIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~--------------~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++||+||+              .+.++..+++++..++.++++ +++++
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i  116 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWII  116 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence            999999999              555666788999999999985 44444

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.97  E-value=4.5e-10  Score=97.62  Aligned_cols=77  Identities=30%  Similarity=0.538  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHH
Q 022407          189 FIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLL  264 (297)
Q Consensus       189 ~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l  264 (297)
                      .++++++.+++|||+++++||+. ++.++|.+...|+|||.   |||+|.|.+|++.+++.|+.|..      |.|+.+|
T Consensus       295 d~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~------f~P~~~l  368 (380)
T KOG1683|consen  295 DFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS------FEPCQLL  368 (380)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc------CCHHHHH
Confidence            58999999999999999999987 49999999999999996   99999999999999999999875      8999999


Q ss_pred             HHHHHcC
Q 022407          265 VQYVDAG  271 (297)
Q Consensus       265 ~~~~~~g  271 (297)
                      ..+..+|
T Consensus       369 ~~~a~~~  375 (380)
T KOG1683|consen  369 KDHAKSG  375 (380)
T ss_pred             HHHHhhh
Confidence            9988874

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.93  E-value=8e-08  Score=83.63  Aligned_cols=145  Identities=17%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|.+|...|++|+++++.....+.+           .+.|.             .+. ++++ ++.
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-----------~~~G~-------------~v~-sl~Eaak~   71 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-----------KADGF-------------EVM-SVSEAVRT   71 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-----------HHcCC-------------EEC-CHHHHHhc
Confidence            689999999999999999999999999998764332222           22232             233 5555 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhc-CCCCeEEEeecCCCCCCC-----------cc
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT-SRPCQVIGMHFMNPPPLM-----------KL  152 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g~h~~~p~~~~-----------~~  152 (297)
                      ||+|+.++|++.+ +..+..++.+.+++++++..+. +..+..- ... +....++=..|=.|-+..           .+
T Consensus        72 ADVV~llLPd~~t-~~V~~~eil~~MK~GaiL~f~h-gfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l  148 (335)
T PRK13403         72 AQVVQMLLPDEQQ-AHVYKAEVEENLREGQMLLFSH-GFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPAL  148 (335)
T ss_pred             CCEEEEeCCChHH-HHHHHHHHHhcCCCCCEEEECC-CcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeE
Confidence            9999999997443 4333356888888888776433 3333110 011 111223323333332211           12


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeE
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTV  180 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~  180 (297)
                      +-|-..  .+-.+.+.+..+.+.+|...
T Consensus       149 ~av~qd--~sg~a~~~ala~a~~iG~~r  174 (335)
T PRK13403        149 VAVHQD--ATGTALHVALAYAKGVGCTR  174 (335)
T ss_pred             EEEEEC--CCCcHHHHHHHHHHHcCCCc
Confidence            333333  34447888888999998763

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.90  E-value=2.5e-07  Score=78.96  Aligned_cols=130  Identities=18%  Similarity=0.285  Sum_probs=96.7

Q ss_pred             CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHH
Q 022407           29 LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELD  107 (297)
Q Consensus        29 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~  107 (297)
                      ++|.+++|++++++.+.+          +.|             +...++..+ +++||+||.|++  +.....++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~----------~~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAK----------ELG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHH----------HcC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            689999999888665411          112             234555555 688999999998  334567788888


Q ss_pred             hhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEe
Q 022407          108 KITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       108 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      +.+.++.+|+|...+++++++.+.++...+++.+.|..|...... .-+..+...+++..+.++.+|..+|...++-
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~  141 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELP  141 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence            767778899999999999999988865557887777766544433 4455666778888999999999999877653

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.88  E-value=5.8e-08  Score=79.57  Aligned_cols=115  Identities=13%  Similarity=0.202  Sum_probs=78.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||. |.||+.++..|.++||+|++                                                 ++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence            48999999 99999999999999999861                                                 36


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc--c--eeEecCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--L--VEVIRGAD  160 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~--vev~~~~~  160 (297)
                      ||+||.|+|.+.  ..++++++.      .+++..+| .-. .+.+.   ..+++|.||+..|....  +  .-++..+.
T Consensus        32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~S-vK~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~   98 (197)
T PRK06444         32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISS-VKW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDI   98 (197)
T ss_pred             CCEEEEeCCHHH--HHHHHHHhC------CeEEeccc-cCH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEECCC
Confidence            999999999654  334555443      24443333 222 12222   34799999988764321  1  22233566


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEec
Q 022407          161 TSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ++++.++.++++++  |.+++.+.
T Consensus        99 ~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         99 SRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCHHHHHHHHHHHc--CCEEEEeC
Confidence            78888899999988  77777653

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.86  E-value=4.5e-08  Score=76.23  Aligned_cols=106  Identities=23%  Similarity=0.374  Sum_probs=68.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +||+|||+ |.+|..+|..|...++  ++.++|+++++++.....+++......            .... ....+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~------------~~~~-i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP------------SPVR-ITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST------------EEEE-EEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc------------cccc-ccccccccc
Confidence            58999999 9999999999998875  899999999876665444443321110            0011 234667789


Q ss_pred             cCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           83 HSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++||+||.+.-.  .            ..+.+++..++.++.+ +.+++..|..+.+
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPvd~  123 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPVDV  123 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSHHH
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcHHH
Confidence            999999987622  1            1234445556777774 4444434544443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.84  E-value=2.5e-08  Score=77.87  Aligned_cols=88  Identities=19%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++           .+.|.             .+.+..+.++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~Gf-------------~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADGF-------------EVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCCC-------------eeccHHHHHhh
Confidence            6899999999999999999999999999998776 33433           45553             33333344899


Q ss_pred             CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeec
Q 022407           85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASN  119 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~  119 (297)
                      ||+|+..+|+..  ..+++ +++.+.++++.++...
T Consensus        61 aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   61 ADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             -SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEES
T ss_pred             CCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEeC
Confidence            999999999655  45666 7799999999887743

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.84  E-value=2.1e-08  Score=79.12  Aligned_cols=114  Identities=21%  Similarity=0.252  Sum_probs=77.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCc-ccccCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNL-KDLHSA   85 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~-~~~~~a   85 (297)
                      |+|+|+|.||+.+|..|+++|++|+++++++ .++..           .+.|.. .....+..........+. .....+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-----------KEQGLTITGPDGDETVQPPIVISAPSADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-----------HHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-----------hheeEEEEecccceecccccccCcchhccCCC
Confidence            7899999999999999999999999999998 66654           333321 111101111111112222 246789


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCC
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRP  135 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~  135 (297)
                      |+||.|+....  ...++..+.+++.+++.|++...++.. +.+.+.++.+
T Consensus        69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~  117 (151)
T PF02558_consen   69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP  117 (151)
T ss_dssp             SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred             cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence            99999996433  456788899999999888888888886 5566665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.83  E-value=8.5e-08  Score=85.46  Aligned_cols=103  Identities=18%  Similarity=0.286  Sum_probs=74.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|.+||+++.... .           .+.+.             .. .++++ ++.
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~~~-------------~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-----------KELGA-------------EY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-----------HHcCC-------------Ee-cCHHHHHhh
Confidence            6999999999999999999999999999999865321 1           11111             22 35555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSR  134 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~  134 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+..
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~  256 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE  256 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence            999999999888766655566777788898887333332  22567776643

>PRK07574 formate dehydrogenase; Provisional

Probab=98.80  E-value=1.4e-07  Score=85.20  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||+.+|..|...|.+|..||++....+..           .+.|             ++...++++ ++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QELG-------------LTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhcC-------------ceecCCHHHHhhc
Confidence            689999999999999999999999999999976322111           1111             233456666 799


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc---HHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-..++++++++ |++.-.   ...+.+.+... -.-.++.-|.
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~  312 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLAGYAGDVWF  312 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence            999999999888765544455667788898887 444322   25676666432 2334444443

>PLN03139 formate dehydrogenase; Provisional

Probab=98.79  E-value=2.1e-07  Score=84.04  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|...|.+|..||++....+..           .+.|             +...+++++ ++.
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KETG-------------AKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhcC-------------ceecCCHHHHHhh
Confidence            689999999999999999999999999999875322211           1112             134456776 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc---HHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-+++-+.++++++++ |++.-.   -+.+.+.+... -...++.-|.
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~  319 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWY  319 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence            999999999888866655566777888898887 444322   25677776432 2334555444

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.78  E-value=3.5e-08  Score=87.11  Aligned_cols=102  Identities=17%  Similarity=0.294  Sum_probs=67.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+.+|..|+..|  ++|.++|+++++++.....+.+.....   +.         ...+ ...++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~---------~~~i-~~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS---------PVKI-KAGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC---------CeEE-EcCCHHHhC
Confidence            48999999999999999999999  689999999988766644443331100   00         0112 235566789


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +||+||.+....              ..+.+.+...+.++.+ +++++.-|.
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsN  118 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASN  118 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecC
Confidence            999999987431              1234455566777776 444443333

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.76  E-value=8.6e-08  Score=84.05  Aligned_cols=110  Identities=12%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||+.+|..+...|++|..||++...                 .+.          .  ....++++ ++.
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~----------~--~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI----------S--SIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc----------c--cccCCHHHHHhh
Confidence            78999999999999999888789999999987321                 010          0  11235666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-.+.-..++++++++ |++.-   ....+.+.+... ....++..|.
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~  237 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWW  237 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCC
Confidence            999999999888765545455666678888887 44432   235677766532 3344444443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.71  E-value=1e-07  Score=84.29  Aligned_cols=78  Identities=21%  Similarity=0.375  Sum_probs=57.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |++.-+||+|||+|.+|+.+|..++..|.  ++.++|++++.++.....+++....+             ....+. .++
T Consensus         2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~   67 (315)
T PRK00066          2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGD   67 (315)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCC
Confidence            34555799999999999999999999988  89999999887766544444332100             011232 466


Q ss_pred             cccccCCcEEEEec
Q 022407           79 LKDLHSADIIVEAI   92 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v   92 (297)
                      ++++++||+||.+.
T Consensus        68 ~~~~~~adivIita   81 (315)
T PRK00066         68 YSDCKDADLVVITA   81 (315)
T ss_pred             HHHhCCCCEEEEec
Confidence            77899999999875

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.71  E-value=1.7e-07  Score=82.65  Aligned_cols=113  Identities=14%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|...|++|..||++++.....                          .......++++ +++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999875421100                          00011234555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++ |++ +  +.-+.+.+.+... -+..++.-|.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf~  254 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVFS  254 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence            999999999988876666566667788898887 444 2  2335677777543 2334455443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=6.9e-07  Score=77.50  Aligned_cols=196  Identities=17%  Similarity=0.205  Sum_probs=125.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      ....|+.||++.||..++.+.+.+||.|.+|+|+.++.+.....-        ++|           ..+....++++  
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flane--------ak~-----------~~i~ga~S~ed~v   65 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANE--------AKG-----------TKIIGAYSLEDFV   65 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHh--------hcC-----------CcccCCCCHHHHH
Confidence            356899999999999999999999999999999999888763321        111           12334555554  


Q ss_pred             --ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCcc-HH-HHhhhcCCCCeEEEeecCCCCCCCc-ceeE
Q 022407           82 --LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-IT-RLASATSRPCQVIGMHFMNPPPLMK-LVEV  155 (297)
Q Consensus        82 --~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p~~~~~-~vev  155 (297)
                        ++..-.||..+..... ....+++|.+++.++-+|+ -..|..+ .+ ...+.....--|+|+-.-....-.+ ...+
T Consensus        66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl  144 (487)
T KOG2653|consen   66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL  144 (487)
T ss_pred             HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc
Confidence              5667788887754433 4567788888887665555 3333333 32 2222222334466654322211111 2346


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeE-------EEecc-chhh----hHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022407          156 IRGADTSDETFRATKALAERFGKTV-------VCSQD-YAGF----IVNRIL---MPMINEAFFTLYT-GVATKEDIDAG  219 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~-------v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a  219 (297)
                      ++|  ++++++..++++|+.+..++       .++++ ..|-    +.|-|=   ..++.|+..++.. ++.+-++|..+
T Consensus       145 MpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~v  222 (487)
T KOG2653|consen  145 MPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEV  222 (487)
T ss_pred             CCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            766  89999999999998874332       34554 2342    334332   3689999999988 66777777776


Q ss_pred             Hh
Q 022407          220 MK  221 (297)
Q Consensus       220 ~~  221 (297)
                      +.
T Consensus       223 F~  224 (487)
T KOG2653|consen  223 FD  224 (487)
T ss_pred             HH
Confidence            64

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.67  E-value=1e-07  Score=84.07  Aligned_cols=98  Identities=17%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|..+|..|+..|  .+|.++|+++++++.....+.+.       ..+.       ......++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-------~~~~i~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-------KPVRIYAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-------CCeEEeeCCHHHhC
Confidence            47999999999999999999999  58999999988765321111111       0000       00112356777799


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEe
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +||+||.+++..              ..+.+++..+|.++.+...+++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv  114 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV  114 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            999999998642              2234455666777775554443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.66  E-value=3.4e-08  Score=81.45  Aligned_cols=104  Identities=24%  Similarity=0.336  Sum_probs=67.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCc----eEEe-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRR----LRCT-   76 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----i~~~-   76 (297)
                      .+|+|+|+|.||+.+|..|+.+|+ +++++|.+   .+.+.+.. ...+      +-|....+.....+.+    +.+. 
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~------~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKAS------QVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChh------hCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            689999999999999999999999 69999998   55544311 0000      0011000000111111    1111 


Q ss_pred             -------cCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           77 -------SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        77 -------~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                             +++.+ ++++|+||+| .++...|..++.++.+..+...++.
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                   12223 6789999999 6888889999999888877666665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.65  E-value=3.5e-07  Score=81.53  Aligned_cols=100  Identities=22%  Similarity=0.291  Sum_probs=69.8

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..|+ ..|.+|+.||++......              .+             +...+++++ ++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence            68999999999999999995 468899999988643210              00             123446666 78


Q ss_pred             CCcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCccH--HHHhhhcC
Q 022407           84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISI--TRLASATS  133 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  133 (297)
                      +||+|+.++|.....+. ++ .+..+.++++++++..+.+..+  ..+.+.+.
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~  251 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD  251 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            99999999998776543 33 3455677888888744444333  45666664

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.63  E-value=3e-07  Score=81.11  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      -+||+|||+|.+|+.+|..++..|.  ++.++|++++.++.....+.+...       +      .....++.+.+++++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-------~------~~~~~v~~~~dy~~~   69 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-------F------LKNPKIEADKDYSVT   69 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-------c------CCCCEEEECCCHHHh
Confidence            3699999999999999999998876  799999998766554333332210       0      001245556788889


Q ss_pred             cCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEE
Q 022407           83 HSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        83 ~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      ++||+||.+.-.  .            ..+.+++...+.++.+...+|
T Consensus        70 ~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi  117 (312)
T cd05293          70 ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL  117 (312)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            999999986521  1            123444555677776554443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.62  E-value=1.2e-06  Score=75.71  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=104.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~   83 (297)
                      .+|+|||.|.||.-+|..+.++||.|...||+.-  +.+.+          ..|.             ...+++.+  -+
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~----------~yg~-------------~~ft~lhdlcer  107 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAE----------KYGS-------------AKFTLLHDLCER  107 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHH----------Hhcc-------------cccccHHHHHhc
Confidence            5899999999999999999999999999999862  22211          1111             12233333  35


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCC-CC------cce
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPP-LM------KLV  153 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~-~~------~~v  153 (297)
                      ..|+|+.|+.  ..-...+++..... .+.++++...+|.-..  +.+.+-++....++..|++..|. ..      |+|
T Consensus       108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV  185 (480)
T KOG2380|consen  108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV  185 (480)
T ss_pred             CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence            7899999984  33344565555544 6778998876665433  55667777778899999998775 22      222


Q ss_pred             eE--ecC-CCChHHHHHHHHHHHHHhCCeEEEe
Q 022407          154 EV--IRG-ADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       154 ev--~~~-~~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      -+  -.+ ...-++-++.+..++...|-+.+++
T Consensus       186 ydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            11  122 2234889999999999999988865

>PRK15076 alpha-galactosidase; Provisional

Probab=98.61  E-value=5e-07  Score=83.12  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=54.9

Q ss_pred             cEEEEECCChhHHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQ--LGV----MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.||...+.  .++    .+|.+|+++|+++++++.....+++.+...   +         ...+++.++|.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~   69 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR   69 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence            58999999999966655  333    356799999999999886655555444322   1         12456778885


Q ss_pred             -ccccCCcEEEEecc
Q 022407           80 -KDLHSADIIVEAIV   93 (297)
Q Consensus        80 -~~~~~aD~Vi~~v~   93 (297)
                       +++++||+||+++-
T Consensus        70 ~eal~dADfVv~ti~   84 (431)
T PRK15076         70 REALQGADYVINAIQ   84 (431)
T ss_pred             HHHhCCCCEEeEeee
Confidence             55999999999873

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.60  E-value=9.3e-08  Score=75.69  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|+|+|.||..++..|++.| ++|+++|+++++.+...+.+..       .. .          . ....+.++ +
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~-~~~~~~~~~~   79 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------A-IAYLDLEELL   79 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------c-eeecchhhcc
Confidence            378999999999999999999996 8899999998877665322110       00 0          0 11233344 7


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      +++|+||.|+|.+..
T Consensus        80 ~~~Dvvi~~~~~~~~   94 (155)
T cd01065          80 AEADLIINTTPVGMK   94 (155)
T ss_pred             ccCCEEEeCcCCCCC
Confidence            899999999988664

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.59  E-value=2.7e-07  Score=81.19  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=67.3

Q ss_pred             EEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |+|||+|.+|+.+|..++..|  .+++++|+++++++.....+++....+             ...++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence            689999999999999999988  589999999988776655444332110             11234445667789999


Q ss_pred             cEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           86 DIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        86 D~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      |+||.+...              +..+.+++..++.++++ +++++.-|
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~s  115 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIILVVS  115 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence            999998742              11234455556777774 44444333

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02602 lactate dehydrogenase

Probab=98.58  E-value=3e-07  Score=82.11  Aligned_cols=98  Identities=21%  Similarity=0.328  Sum_probs=65.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+.+|..++..|.  ++.++|++++.++.....+.+.... .           .. ..+....++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~-~-----------~~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAF-L-----------PR-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhc-C-----------CC-CEEEeCCCHHHhC
Confidence            599999999999999999998876  7999999988766554443332110 0           00 2344445778899


Q ss_pred             CCcEEEEeccc-------C-------HHHHHHHHHHHHhhccCCeEE
Q 022407           84 SADIIVEAIVE-------S-------EDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        84 ~aD~Vi~~v~e-------~-------~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      +||+||.+.-.       .       ..+.+++...+.++++...+|
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi  151 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL  151 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999998521       1       123344555577776554433

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.58  E-value=1.1e-06  Score=83.14  Aligned_cols=114  Identities=21%  Similarity=0.237  Sum_probs=76.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||+.+|..+...|.+|..||+.... +..           .+.|             +...+++++ ++.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 111           1112             133456666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+-+-  ....+.+.+... -...++..|
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf  256 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVF  256 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecC
Confidence            999999999877654443344555778888877333222  235677776532 233445444

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.54  E-value=1.7e-06  Score=81.93  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=76.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|..||++... +..           .+.|             +... ++++ ++.
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999986431 111           1112             1233 5666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+-+-  .-..+.+.+... -.-.++..|
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf  257 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVF  257 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecC
Confidence            999999999887755444356667788888887333222  235677776432 233445444

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.53  E-value=2.4e-07  Score=75.16  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+.+|..+..-|.+|..||++.......           .+.+              ....++++ ++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-----------~~~~--------------~~~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-----------DEFG--------------VEYVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-----------HHTT--------------EEESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-----------cccc--------------ceeeehhhhcch
Confidence            689999999999999999999999999999998754421           1111              13446666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-+.++++++++...-+-  +-+.+.+.+... ....++..+.
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  155 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE  155 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence            999999999665433333344556778898888433332  235677766433 2334555443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.47  E-value=2.4e-06  Score=75.61  Aligned_cols=113  Identities=21%  Similarity=0.283  Sum_probs=78.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+ .+...+..             .+             ....+++++ ++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence            6899999999999999999999999999999 33322111             11             134566777 89


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|...+|...+-+.-+-++.-..++++++++ |++-   +.-..+.+.+... -+-.++..|.
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~  261 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFE  261 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence            9999999999887754434345556678888776 5552   2335677777543 2334455554

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.46  E-value=8.6e-07  Score=78.27  Aligned_cols=107  Identities=18%  Similarity=0.306  Sum_probs=67.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLD--VWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~--V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|+|+ |.+|..++..++..|+.  |+++|+++  ++++.....+.+.   +...+         ...+++.+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~~~---------~~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAAAG---------IDAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhccC---------CCcEEEECCCHH
Confidence            58999998 99999999999999874  99999964  3333222121111   01111         012455666777


Q ss_pred             cccCCcEEEEeccc------C-H-------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           81 DLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++++||+||.++..      + .       ...+.+...|.+.++ +.+++..+++.++
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~  126 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV  126 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence            79999999999841      1 1       234445556777765 5555545666554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.46  E-value=6.2e-06  Score=72.25  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCcccccCCcEEEEecc
Q 022407           15 QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNLKDLHSADIIVEAIV   93 (297)
Q Consensus        15 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~   93 (297)
                      .||+.+|..|+++|++|++++|+ +..+..           .+.|.. ...........+..+++++....+|+||.|++
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i-----------~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK   68 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEAL-----------NQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK   68 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHH-----------HHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence            37999999999999999999997 444443           233321 00000000012334455566778999999997


Q ss_pred             cCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--cceeEecCC-CChH
Q 022407           94 ESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM--KLVEVIRGA-DTSD  163 (297)
Q Consensus        94 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~--~~vev~~~~-~~~~  163 (297)
                      ...  ...+++.+.+++.++++|++...++.. +.+.+.++.+ +++ |..++     .|-.+.  ..-.+..|. ....
T Consensus        69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~  145 (293)
T TIGR00745        69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN  145 (293)
T ss_pred             chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence            543  456778888888888888888888876 4455555432 333 22222     121100  001122221 1122


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRIL  195 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~  195 (297)
                      +..+.+...|...|.......|..+.++..++
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~  177 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGDILAAIWKKLL  177 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence            45566777788777777666665554444433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PLN02928 oxidoreductase family protein

Probab=98.45  E-value=3.6e-06  Score=75.45  Aligned_cols=127  Identities=13%  Similarity=0.076  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|+.||++.......            ..+ +................++++ ++.
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED------------GLL-IPNGDVDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh------------hhc-cccccccccccccCcccCHHHHHhh
Confidence            689999999999999999999999999999974321110            000 000000000000001235565 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-++.-+.++++++|+...-+  +.-+.+.+.+... -...++..|.
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~  290 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAW  290 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence            99999999987765444445566677889888843333  2335677777533 2334555543

>PRK05442 malate dehydrogenase; Provisional

Probab=98.40  E-value=1.6e-06  Score=76.91  Aligned_cols=111  Identities=13%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccC
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAP   70 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   70 (297)
                      |.++ .||+|||+ |.+|+.+|..|+..|.       ++.++|++++  +++.....+.+....+.            ..
T Consensus         1 ~~~~-~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~------------~~   67 (326)
T PRK05442          1 MKAP-VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL------------AG   67 (326)
T ss_pred             CCCC-cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc------------CC
Confidence            5443 69999998 9999999999988765       7999999643  23332222222110000            00


Q ss_pred             CceEEecCcccccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           71 RRLRCTSNLKDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        71 ~~i~~~~~~~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .+++ .++++++++||+||.+.-  .            +..+.+++..+|.++.+++++++..|..+++
T Consensus        68 ~~i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv  135 (326)
T PRK05442         68 VVIT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT  135 (326)
T ss_pred             cEEe-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence            1222 456678999999998652  1            1123445556677777667766655555544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.40  E-value=1.5e-06  Score=75.74  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=61.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.||..+|..|...|.+|++++|++++.+.+           .+.|..          .+ ..+++.+ +++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-----------~~~g~~----------~~-~~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-----------TEMGLI----------PF-PLNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCCe----------ee-cHHHHHHHhcc
Confidence            689999999999999999999999999999998765443           222210          00 1123344 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +|+||.++|.... .    ++..+.++++++++..+|
T Consensus       210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence            9999999986431 1    223345567777764444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.38  E-value=4.2e-06  Score=73.93  Aligned_cols=109  Identities=24%  Similarity=0.314  Sum_probs=76.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+.....               ..+             +. ..++++ ++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence            689999999999999999998899999999863210               001             11 235666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-+.++++++++ |++ +  ++-..+.+.+... -. .++..|.
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            999999999877654444445556778899888 454 2  3335677777543 33 5666554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.38  E-value=1.6e-06  Score=76.26  Aligned_cols=74  Identities=23%  Similarity=0.408  Sum_probs=51.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ||+|||+|.+|+.+|..++..|.  ++.++|++++.++.....+.+...       +..    ....++. ..+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~-------~~~----~~~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-------LTY----STNTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhc-------cCC----CCCEEEE-ECCHHHhCC
Confidence            69999999999999999998887  799999988766544333222110       000    0001233 467788999


Q ss_pred             CcEEEEec
Q 022407           85 ADIIVEAI   92 (297)
Q Consensus        85 aD~Vi~~v   92 (297)
                      ||+||.+.
T Consensus        69 aDivvita   76 (307)
T cd05290          69 ADIIVITA   76 (307)
T ss_pred             CCEEEECC
Confidence            99999876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.34  E-value=2.9e-06  Score=66.69  Aligned_cols=87  Identities=31%  Similarity=0.396  Sum_probs=56.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +++.|+|.|..|+++|..|...|-+|+++|++|-++-++           ...|.             .+. ++++ ++.
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------~~dGf-------------~v~-~~~~a~~~   78 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------AMDGF-------------EVM-TLEEALRD   78 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------HHTT--------------EEE--HHHHTTT
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------hhcCc-------------Eec-CHHHHHhh
Confidence            689999999999999999999999999999999765443           33342             333 3444 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +|++|.+......+..+.|    +.+++++|+++.++
T Consensus        79 adi~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh  111 (162)
T PF00670_consen   79 ADIFVTATGNKDVITGEHF----RQMKDGAILANAGH  111 (162)
T ss_dssp             -SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSS
T ss_pred             CCEEEECCCCccccCHHHH----HHhcCCeEEeccCc
Confidence            9999998765443333333    34678888885444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.34  E-value=3.7e-06  Score=75.93  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||+.+|..+...|++|.+||+.....+                +.             ....++++ ++.
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~-------------~~~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD-------------GDFVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC-------------ccccCHHHHHhh
Confidence            6899999999999999999999999999998543110                00             01235666 689


Q ss_pred             CcEEEEecccCHH---HHHHHH-HHHHhhccCCeEEeecCCCc--cHHHHhhhcCC-CCeEEEeecC
Q 022407           85 ADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSI--SITRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~~~~g~h~~  144 (297)
                      ||+|+.++|-..+   ....++ ++.-..++++++++..+-+-  ....+.+.+.. .....++..|
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~  234 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW  234 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            9999999996542   122333 33445678888887333332  23566666633 2233444444

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.34  E-value=2e-06  Score=74.95  Aligned_cols=107  Identities=22%  Similarity=0.376  Sum_probs=65.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+++|..|+..++  ++.++|++++..+.-...+.+....            .....++....++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~------------~~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAP------------LGSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchh------------ccCceEEecCCChhhhc
Confidence            489999999999999999987654  8999999965544322221111100            00112222224478899


Q ss_pred             CCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           84 SADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        84 ~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +||+|+.+.  |..            ..+.+.+..++.+.++ +.+++..|..+.+
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~  123 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDI  123 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHH
Confidence            999999987  322            2234455556777776 5555445555444

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.33  E-value=9.2e-06  Score=74.43  Aligned_cols=108  Identities=26%  Similarity=0.385  Sum_probs=75.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+.+...                .+            ......++++ ++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence            689999999999999999999999999999863210                00            0123446777 799


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEee
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMH  142 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h  142 (297)
                      ||+|+.++|-..+.+.-+-++.-..++++++++ |++.   ++...+.+.+... -.-.++.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalD  264 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAID  264 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEc
Confidence            999999999877654444345566778888887 4542   2335677666432 2334444

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.30  E-value=8.4e-06  Score=68.06  Aligned_cols=151  Identities=21%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|++||+|.|..+++..+..+|.    ++..+-.+......          .+.+.|.            -.+.++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g~------------~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALGV------------KTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCCc------------eeeechHHH
Confidence            479999999999999999999886    34444332111111          0122222            123444445


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecCCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGAD  160 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~~~  160 (297)
                      ++.+|+++.++  ++++...+..++......+.||+|...+..++.+...++.+.|++...+..|..+..... +..+..
T Consensus        59 ~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            88999999999  455566777777665667779998999999988888888778899999988886665555 345556


Q ss_pred             ChHHHHHHHHHHHHHhCCeE
Q 022407          161 TSDETFRATKALAERFGKTV  180 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~  180 (297)
                      ...+..+.+..++...|+-.
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             cchhhHHHHHHHHHhcCcce
Confidence            67777788999999998844

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=98.30  E-value=4.3e-06  Score=74.06  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      ..||+|||+ |.+|+.+|..|...|.       ++.++|+++  ++++.....+.+...              ......+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~   68 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF--------------PLLAGVV   68 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc--------------cccCCcE
Confidence            358999998 9999999999998886       799999965  323332222221110              0011112


Q ss_pred             E-ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      . .++++++++||+||.+.--              +..+.+.+..++.++++++++++..|..+++
T Consensus        69 i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv  134 (323)
T TIGR01759        69 ATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT  134 (323)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence            2 4567789999999987521              1223455566688888767766655555544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.30  E-value=2.5e-05  Score=64.58  Aligned_cols=39  Identities=28%  Similarity=0.478  Sum_probs=35.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999998776654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.26  E-value=2.3e-06  Score=75.81  Aligned_cols=107  Identities=9%  Similarity=0.050  Sum_probs=66.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      ..||+|||+ |.+|..+|..++..|.       ++.++|++++.  ++...-.+.+.        ..      ....+++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~~------~~~~~~~   67 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC--------AF------PLLAEIV   67 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhc--------cc------cccCceE
Confidence            369999999 9999999999998887       79999996432  32221111111        00      0111122


Q ss_pred             E-ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      . .++++++++||+||.+.--              +..+.+.+..+|.++.+++.+++..|..+++
T Consensus        68 i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~  133 (322)
T cd01338          68 ITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT  133 (322)
T ss_pred             EecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence            2 4566789999999987521              1223445556677888656665545554443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.25  E-value=4.6e-06  Score=73.87  Aligned_cols=93  Identities=22%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.||..++..+..  ...+|++|+|++++.+++.+.+++       .|.           .+...++.++ 
T Consensus       125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a  186 (314)
T PRK06141        125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA  186 (314)
T ss_pred             CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence            4789999999999999985553  447899999999988877544321       121           1345566665 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++||+|+.|.+....    ++.  .+.+++++.|...++
T Consensus       187 v~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~  220 (314)
T PRK06141        187 VRQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGN  220 (314)
T ss_pred             HhcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCC
Confidence            8899999888875522    221  135566776654444

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=2.4e-06  Score=74.11  Aligned_cols=69  Identities=23%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||.| .||.+||..|.++|+.|++|++...                                      ++++ ++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------------------------~l~e~~~  201 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------------------------DAKALCR  201 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            789999996 9999999999999999999986532                                      2233 56


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.+++....+...+       ++++++++..
T Consensus       202 ~ADIVIsavg~~~~v~~~~-------ik~GaiVIDv  230 (301)
T PRK14194        202 QADIVVAAVGRPRLIDADW-------LKPGAVVIDV  230 (301)
T ss_pred             cCCEEEEecCChhcccHhh-------ccCCcEEEEe
Confidence            7999999998765544433       6677776643

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=98.25  E-value=1.1e-05  Score=74.07  Aligned_cols=106  Identities=8%  Similarity=0.083  Sum_probs=70.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE-
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-------GL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR-   74 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-   74 (297)
                      -||+|||+ |.+|..+|..|+..       |+  ++.++|+++++++...-.+++....+.              ..++ 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i  166 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI  166 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence            58999999 99999999999987       66  799999999987766544444331111              1233 


Q ss_pred             EecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           75 CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        75 ~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .+++++++++||+||.+.--              +..+.+++...|.++..++.+++..+...++
T Consensus       167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv  231 (444)
T PLN00112        167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT  231 (444)
T ss_pred             ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence            34677889999999987521              1123444455566654566666545554443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.23  E-value=1.3e-05  Score=70.40  Aligned_cols=89  Identities=22%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.+|..++..|...|.+|+++|+++++.+.+           .+.|..           ....+++.+ +++
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-----------~~~G~~-----------~~~~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-----------TEMGLS-----------PFHLSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCe-----------eecHHHHHHHhCC
Confidence            699999999999999999999999999999998765443           222320           001123333 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +|+||.++|...     +-++.-+.++++.+|+...+
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence            999999998432     22233344566666654443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.21  E-value=1.9e-05  Score=69.87  Aligned_cols=109  Identities=19%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+....  ..            .                ....++++ ++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~----------------~~~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------R----------------EGYTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------c----------------cccCCHHHHHHh
Confidence            69999999999999999998889999999875321  00            0                01235666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-..++++++++ |++ +  +.-..+.+.+... -.-.++..|.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~  261 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVLV  261 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence            999999999877644434445556778899888 454 2  2335677777532 2334455443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.21  E-value=6.1e-06  Score=71.44  Aligned_cols=71  Identities=25%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .+||+|||+|.||..++..|.+.  +++|. ++|+++++.+...+          +.|.            ....+++++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee   63 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ   63 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence            37899999999999999999863  78876 88999887654411          1111            123455665


Q ss_pred             -ccCCcEEEEecccCHH
Q 022407           82 -LHSADIIVEAIVESED   97 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~   97 (297)
                       +.++|+|++|.|.+.+
T Consensus        64 ll~~~D~Vvi~tp~~~h   80 (271)
T PRK13302         64 LATHADIVVEAAPASVL   80 (271)
T ss_pred             HhcCCCEEEECCCcHHH
Confidence             6789999999997664

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.20  E-value=8.1e-06  Score=70.54  Aligned_cols=68  Identities=16%  Similarity=0.292  Sum_probs=49.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|||+|.||..++..+.+.  +++ +.++|+++++.+.+.+          ..+             ....+++++ 
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence            5899999999999999998876  455 5589999887665411          111             134556666 


Q ss_pred             ccCCcEEEEecccCH
Q 022407           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +.++|+|++|.+.+.
T Consensus        59 l~~~DvVvi~a~~~~   73 (265)
T PRK13304         59 VEDVDLVVECASVNA   73 (265)
T ss_pred             hcCCCEEEEcCChHH
Confidence            588999999997544

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.20  E-value=1.6e-06  Score=78.09  Aligned_cols=110  Identities=22%  Similarity=0.262  Sum_probs=70.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||+.+|..+..-|.+|.+||+....  .               +.           . ....++++ ++.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~-~~~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------E-GDFRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------c-cccCCHHHHHhh
Confidence            69999999999999999999999999999974321  0               00           0 01235666 689


Q ss_pred             CcEEEEecccCHH---HHHHHH-HHHHhhccCCeEEeecCC-Cc--cHHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTS-SI--SITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts-~~--~~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+..+|-..+   -...++ ++.-..++++++++ |++ +-  +-..+.+.+.. ...-.++..|.
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e  235 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVWE  235 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence            9999999985442   011222 33445678888888 454 32  33566666633 23334454443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.20  E-value=5.7e-06  Score=63.92  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=53.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|.|||+|-||++++..|+..|.+ |++++|+.++++.+.+.+         .+.         .-.+...+++.. +
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~---------~~~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV---------NIEAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC---------SEEEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc---------ccceeeHHHHHHHH
Confidence            36899999999999999999999997 999999999887764322         010         001122333443 6


Q ss_pred             cCCcEEEEecccCH
Q 022407           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      ..+|+||.|.|-..
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999987654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.20  E-value=9.6e-05  Score=63.55  Aligned_cols=203  Identities=14%  Similarity=0.245  Sum_probs=117.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKS----ISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ++||+-||+|.+|.+-...++..  -.+|+++|.+..++.+-...    .+-.++..++         ..+-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence            36899999999999888776643  46899999999887653211    0111222222         122355678888


Q ss_pred             ccc-ccCCcEEEEecccC-------------HHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEe
Q 022407           79 LKD-LHSADIIVEAIVES-------------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGM  141 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~-------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~  141 (297)
                      .+. ++++|+|+.+|..+             +..-+...+.|.+....+.|++ ..|++|+   +.+...+.+...  |+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence            887 99999999998442             2223344455677776777776 4566665   345555543221  22


Q ss_pred             ec--C-CCCCCC----------cceeEecCCCChHH---HHHHHHHHHHHh-CCeEEEec-----cchhhhHHHHHH---
Q 022407          142 HF--M-NPPPLM----------KLVEVIRGADTSDE---TFRATKALAERF-GKTVVCSQ-----DYAGFIVNRILM---  196 (297)
Q Consensus       142 h~--~-~p~~~~----------~~vev~~~~~~~~~---~~~~~~~l~~~l-G~~~v~~~-----d~~g~i~nri~~---  196 (297)
                      +|  + ||.-+.          +--.++.|.. +|+   +++.+..+++.+ -+.-+...     +-.-+.+|.+++   
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrvligg~e-tpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqri  227 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE-TPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRI  227 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceEEECCCC-ChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHH
Confidence            22  1 222111          1123455544 444   445555555543 22222222     223345555554   


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHH
Q 022407          197 PMINEAFFTLYTGVATKEDIDAGM  220 (297)
Q Consensus       197 ~~~~Ea~~l~~~g~~~~~~id~a~  220 (297)
                      .-+|..-.++|.-+++..++..|.
T Consensus       228 ssins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  228 SSINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             hhhHHHHHHHHhcCCCHHHHHHHh
Confidence            356777788888889998888876

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.18  E-value=4.2e-05  Score=66.43  Aligned_cols=170  Identities=21%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CC-----cEEEEeCCHHHHH---HHHHHHHHH--HHHHHHcCCCChhhhcccCC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GL-----DVWLVDTDPDALV---RATKSISSS--IQKFVSKGQLSQAMGTDAPR   71 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~   71 (297)
                      ...||+|||+|++|+.||..+..+  ++     +|..|-...+.-.   .+.+-|.+.  .-+++..        -....
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg--------~~lP~   91 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPG--------IKLPE   91 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCC--------ccCCC
Confidence            346899999999999999988763  22     5777765443222   233333211  1112111        12345


Q ss_pred             ceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-----------HHHhhhcCCCCeEE
Q 022407           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------TRLASATSRPCQVI  139 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------~~l~~~~~~~~~~~  139 (297)
                      ++...+|+.+ +.+||++|..+|...  ...++.+|..+.++++..+|.+.++..           +.|.+.++-|..++
T Consensus        92 NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL  169 (372)
T KOG2711|consen   92 NVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVL  169 (372)
T ss_pred             CeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceee
Confidence            6777888876 889999999999655  667899999999999988888776652           23444555444432


Q ss_pred             EeecCCCCCCCc------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          140 GMHFMNPPPLMK------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       140 g~h~~~p~~~~~------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      .     .|++..      ..|-..+.....+.-..+..+|++--..++.+.|..+
T Consensus       170 ~-----GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~  219 (372)
T KOG2711|consen  170 M-----GANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG  219 (372)
T ss_pred             c-----CCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence            2     222211      2344334333333333467777777777777777654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=98.18  E-value=2.3e-05  Score=70.78  Aligned_cols=107  Identities=10%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLV--DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .-||+|||+ |.+|..+|..++..|.       .+.++  |++.++++...-.+.+....+              ..+++
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~  109 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVS  109 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceE
Confidence            358999999 9999999999998775       24445  888887766544444332111              11233


Q ss_pred             -EecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                       .+++++++++||+||.+.--              +..+.+.+...|.++.+++.+++..|...++
T Consensus       110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv  175 (387)
T TIGR01757       110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT  175 (387)
T ss_pred             EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence             34567789999999986521              1223444555677777677766655544443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.18  E-value=0.00012  Score=62.79  Aligned_cols=180  Identities=21%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|+|||+|..|.+-|.+|..+|.+|++--|.... -+++           .+.|.             .+.+-.+.++.
T Consensus        19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k~   74 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAKR   74 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhhc
Confidence            69999999999999999999999998877665443 2222           44453             44444445899


Q ss_pred             CcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC----------c-c
Q 022407           85 ADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM----------K-L  152 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~----------~-~  152 (297)
                      ||+|+..+|+..  ..+++. +|.+.++.+..+.... ++.+..-.-..+....++=..|=.|-+..          | +
T Consensus        75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~FaH-GfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~L  151 (338)
T COG0059          75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGFAH-GFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPAL  151 (338)
T ss_pred             CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEecc-ccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeE
Confidence            999999999655  446666 7999999888776433 33332111111111222222333332211          1 2


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeE---EEe---c----cchh--hhHHHHHHHHHHHHHHHHHcCCCCHH
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTV---VCS---Q----DYAG--FIVNRILMPMINEAFFTLYTGVATKE  214 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~---v~~---~----d~~g--~i~nri~~~~~~Ea~~l~~~g~~~~~  214 (297)
                      +-|-.  ..+-.+.+.+..+.+.+|...   +..   .    |--|  .+.--.+..++..++..+-+.+.+|+
T Consensus       152 iAV~q--D~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE  223 (338)
T COG0059         152 IAVHQ--DASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPE  223 (338)
T ss_pred             EEEEe--CCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHH
Confidence            22332  234457888888999998543   211   1    1112  13333455666666655433334554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.17  E-value=1.2e-05  Score=70.80  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=61.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cC---
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SN---   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---   78 (297)
                      +||+|||+ |.+|+.+|..++..|.  ++.++|++  +++...-.        +..+.        ...+++.. .+   
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--------L~~~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--------LSHIN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--------hHhCC--------CcceEEEecCCCch
Confidence            48999999 9999999999998885  89999998  22211001        11110        11234432 32   


Q ss_pred             cccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++++++||+||.+.--              +..+.+++...+.++.+ +++++.-|...
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvtNPv  120 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIISNPV  120 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCch
Confidence            6789999999987621              12234445556777754 55555344443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.16  E-value=9.4e-06  Score=73.66  Aligned_cols=146  Identities=18%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW------LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ++|+|||+|..|...|..|...|++|+      .+|.+.+.-+.+           .+.|.             .+ .++
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v-~~~   91 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KV-GTY   91 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------cc-CCH
Confidence            789999999999999999999999999      444333333332           23332             23 334


Q ss_pred             cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022407           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM--------  150 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~--------  150 (297)
                      ++ ++.||+|+..+|+. . ...++.++.+.+++++.+.-+. +..+....-..+....++-+.|=.|-+..        
T Consensus        92 ~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~  168 (487)
T PRK05225         92 EELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGF  168 (487)
T ss_pred             HHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCC
Confidence            44 89999999999987 3 6777889999999998887443 33332111111122334434343332211        


Q ss_pred             --c-ceeEecCCCChHHHHHHHHHHHHHhCCe
Q 022407          151 --K-LVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       151 --~-~vev~~~~~~~~~~~~~~~~l~~~lG~~  179 (297)
                        | ++-|-.-...+-.+.+.+..+...+|..
T Consensus       169 Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~  200 (487)
T PRK05225        169 GVPTLIAVHPENDPKGEGMAIAKAWAAATGGH  200 (487)
T ss_pred             CceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence              1 2233311234556788888899999876

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.13  E-value=4.1e-05  Score=67.97  Aligned_cols=112  Identities=19%  Similarity=0.258  Sum_probs=75.1

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|||||+|.+|..+|..+. .-|.+|..||+.......            ...+             +.. .++++ ++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~-------------~~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFN-------------ARY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcC-------------cEe-cCHHHHHH
Confidence            78999999999999999987 678899999986422110            0111             122 35666 79


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      .||+|+.++|-..+.+.-+-++.-..++++++++ |++ +  +.-+.+.+.+... -.-.++..|
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf  263 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVF  263 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence            9999999999888755444445666778898888 554 2  2335677777533 223444444

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.12  E-value=3.4e-05  Score=68.37  Aligned_cols=108  Identities=20%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+.+|..+..-|.+|..||+.... ..                             .. ..++++ ++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence            68999999999999999999999999999986321 00                             00 124666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-+.++++++++ |++ +  +.-..+.+.+... -.-.++..|.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  261 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVLS  261 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence            999999999877754444455666778899888 554 2  2335677777532 2334454443

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.12  E-value=2.7e-05  Score=70.92  Aligned_cols=84  Identities=26%  Similarity=0.307  Sum_probs=59.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+           ...|.             ......+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-----------~~~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-----------AMEGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-----------HhcCC-------------EEccHHHHHcCC
Confidence            689999999999999999999999999999999887665           33342             111111236789


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      |+||+|......+.    .+.-+.++++.+++
T Consensus       259 DVVI~atG~~~~i~----~~~l~~mk~Ggilv  286 (413)
T cd00401         259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVC  286 (413)
T ss_pred             CEEEECCCCHHHHH----HHHHhcCCCCcEEE
Confidence            99999986433222    23334567777665

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.12  E-value=1.3e-05  Score=60.93  Aligned_cols=101  Identities=27%  Similarity=0.431  Sum_probs=58.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|+|+ |.||+.++..+.+ .|+++. .+|++++...                |.-..+-.......+...+++++ 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~----------------g~d~g~~~~~~~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV----------------GKDVGELAGIGPLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT----------------TSBCHHHCTSST-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc----------------cchhhhhhCcCCcccccchhHHHh
Confidence            48999999 9999999999888 788855 7788762110                00000000111233456778877 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR  127 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~  127 (297)
                      +..+|++|+...  ++   .+...+...++.+.-+++.|.+.+.++
T Consensus        65 ~~~~DVvIDfT~--p~---~~~~~~~~~~~~g~~~ViGTTG~~~~~  105 (124)
T PF01113_consen   65 LEEADVVIDFTN--PD---AVYDNLEYALKHGVPLVIGTTGFSDEQ  105 (124)
T ss_dssp             TTH-SEEEEES---HH---HHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred             cccCCEEEEcCC--hH---HhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence            777999999772  22   223333344444666666788887543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.12  E-value=1e-05  Score=71.61  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=73.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +++||||.|.+|..+|..+..-|.+|..||+++. -+..            +.+            ..++.+ +++ ++.
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~------------~~~------------~~~y~~-l~ell~~  200 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE------------KEL------------GARYVD-LDELLAE  200 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH------------hhc------------Cceecc-HHHHHHh
Confidence            7999999999999999999977889999999875 1111            111            013444 665 899


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATS  133 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~  133 (297)
                      ||+|+..+|-..+-..-+-++.-+.++++++|+ ||+-   ++...+.+.+.
T Consensus       201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         201 SDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK  251 (324)
T ss_pred             CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            999999999888765555566677788888887 6652   33356666664

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=5.9e-05  Score=63.49  Aligned_cols=93  Identities=18%  Similarity=0.290  Sum_probs=61.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecC---cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSN---LK   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~---~~   80 (297)
                      |+|.|||+|.+|..+|..|.+.||+|+++|+++++.++....         +..           .+...  .++   ++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---------~~~-----------~~~v~gd~t~~~~L~   60 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---------ELD-----------THVVIGDATDEDVLE   60 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---------hcc-----------eEEEEecCCCHHHHH
Confidence            589999999999999999999999999999999987763110         010           00111  112   22


Q ss_pred             c--ccCCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecC
Q 022407           81 D--LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNT  120 (297)
Q Consensus        81 ~--~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~t  120 (297)
                      +  +.++|+++.+..++..  ..++..+... .....+++...
T Consensus        61 ~agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          61 EAGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             hcCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEec
Confidence            2  6889999999987663  3444444432 34445555333

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=98.09  E-value=2.8e-05  Score=62.81  Aligned_cols=32  Identities=41%  Similarity=0.627  Sum_probs=30.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ||+|||+|.||+.++..|+.+|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999999 599999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.08  E-value=1.9e-05  Score=69.89  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..++..|...| .+|+++|+++++.+.+.+.          .|.           .....++..+ +
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l  236 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-----------NAVPLDELLELL  236 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEEeHHHHHHHH
Confidence            478999999999999999998865 6899999999876554211          121           0111123333 6


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+||.|++.+..
T Consensus       237 ~~aDvVi~at~~~~~  251 (311)
T cd05213         237 NEADVVISATGAPHY  251 (311)
T ss_pred             hcCCEEEECCCCCch
Confidence            789999999986554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=98.08  E-value=1.6e-05  Score=70.09  Aligned_cols=99  Identities=16%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-e-cC--c
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-T-SN--L   79 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~   79 (297)
                      ||+|||+ |.+|+.+|..|+..|+  ++.++|+++  .+..      .++  ...+.        ...++.. . ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~------a~D--L~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGV------AAD--LSHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEE------Ech--hhcCC--------cCceEEEecCCCchH
Confidence            6999999 9999999999998886  899999987  1110      000  11111        1123443 2 22  6


Q ss_pred             ccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           80 KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++||+||.+..-              +..+.+++...+.++. ++++++.-|...+
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvD  120 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVN  120 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchh
Confidence            779999999987621              2223445555677775 4555544444443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=98.06  E-value=1.1e-05  Score=70.83  Aligned_cols=98  Identities=19%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             EECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccccCCc
Q 022407           10 VVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDLHSAD   86 (297)
Q Consensus        10 iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aD   86 (297)
                      |||+|.+|..+|..++..+.  ++.++|++++.++.....+.+....              ...+.+. ..+++++++||
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~--------------~~~~~~i~~~~~~~~~daD   66 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASF--------------LPTPKKIRSGDYSDCKDAD   66 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcc--------------cCCCeEEecCCHHHHCCCC
Confidence            69999999999999998886  7999999887766544333332110              0011122 35677899999


Q ss_pred             EEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           87 IIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        87 ~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      +||.+.-.              +..+.+++...+.++. ++++++.-|..
T Consensus        67 ivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP  115 (299)
T TIGR01771        67 LVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNP  115 (299)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            99987632              1123444555577765 45544434433

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.05  E-value=2.4e-05  Score=72.00  Aligned_cols=88  Identities=30%  Similarity=0.365  Sum_probs=61.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+.+|..+...|.+|+++|+++.+...+           ...|.             .. .++++ ++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------~~~G~-------------~~-~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-----------AMEGY-------------QV-VTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------HhcCc-------------ee-ccHHHHHhc
Confidence            689999999999999999999999999999987764332           11221             11 23444 789


Q ss_pred             CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCcc
Q 022407           85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSIS  124 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +|+||.+....     .++ .+.-+.++++++++ |++...
T Consensus       310 ADIVI~atGt~-----~iI~~e~~~~MKpGAiLI-NvGr~d  344 (476)
T PTZ00075        310 ADIFVTATGNK-----DIITLEHMRRMKNNAIVG-NIGHFD  344 (476)
T ss_pred             CCEEEECCCcc-----cccCHHHHhccCCCcEEE-EcCCCc
Confidence            99999986422     233 23344567888877 454444

>cd00704 MDH Malate dehydrogenase

Probab=98.04  E-value=9e-06  Score=72.10  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-   75 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-   75 (297)
                      ||+|+|+ |.+|+.+|..|+..|.       ++.++|+++  +.++.....+.+..              .......+. 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~--------------~~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCA--------------FPLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhc--------------ccccCCcEEe
Confidence            7999999 9999999999998664       599999987  43322111111100              001111222 


Q ss_pred             ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           76 TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        76 ~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .++++++++||+||.+.-.              +..+.+++..++.+++.++.+++..|..+++
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~  131 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT  131 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence            4456679999999986521              1223455556677886456655545544443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00106 malate dehydrogenase

Probab=98.03  E-value=3.1e-05  Score=68.54  Aligned_cols=100  Identities=20%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC---
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN---   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---   78 (297)
                      .||+|||+ |.+|+.+|..|+..++  ++.++|+++  .+...-.        +....       . ...+.. +++   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~D--------l~~~~-------~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAAD--------VSHIN-------T-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEch--------hhhCC-------c-CceEEEEeCCCCH
Confidence            68999999 9999999999997776  899999987  1110000        00000       0 112332 233   


Q ss_pred             cccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      .+++++||+||.+.-.              +..+..++...+.++.+ +.+++..|....
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPvD  139 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPVN  139 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCcc
Confidence            4569999999987521              22234455566777764 455443444443

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.03  E-value=2.8e-05  Score=69.20  Aligned_cols=93  Identities=14%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|.||...+..+..  ...+|.+||+++++.+...+.+++       .|.           .+...++.++ 
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~ea  189 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREA  189 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHH
Confidence            4789999999999997666543  456899999999998776544321       121           1345666666 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++||+|+.|+|....+    +.  ..++++++.|....+
T Consensus       190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA  223 (325)
T ss_pred             hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence            89999999999865422    11  234577776654443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.02  E-value=3.5e-05  Score=70.02  Aligned_cols=96  Identities=26%  Similarity=0.311  Sum_probs=64.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .+. +.+ .++.
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-----------~~~G~-------------~v~-~leeal~~  250 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-----------AMDGF-------------RVM-TMEEAAKI  250 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-----------HhcCC-------------EeC-CHHHHHhc
Confidence            689999999999999999999999999999998765433           22232             122 223 3788


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhh
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLAS  130 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~  130 (297)
                      +|+||++......+.    .+.-..++++++++.... .  ++...+.+
T Consensus       251 aDVVItaTG~~~vI~----~~~~~~mK~GailiN~G~~~~eId~~aL~~  295 (406)
T TIGR00936       251 GDIFITATGNKDVIR----GEHFENMKDGAIVANIGHFDVEIDVKALEE  295 (406)
T ss_pred             CCEEEECCCCHHHHH----HHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence            999999876422222    234456778887773333 1  33445544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02306 hydroxypyruvate reductase

Probab=98.01  E-value=2.1e-05  Score=71.31  Aligned_cols=128  Identities=22%  Similarity=0.303  Sum_probs=77.0

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++|||||+|.+|+.+|..+. .-|.+|..||+.... .+.......   ......+.        ....+....++++ +
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~--------~~~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGE--------QPVTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccc--------ccccccccCCHHHHH
Confidence            68999999999999999986 669999999987542 111000000   00000000        0001122346777 7


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      +.||+|+.++|-..+.+.-+-++.-+.++++++++ |++ +  +.-..+.+.+... -...++.-|.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~  300 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVFE  300 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence            99999999999777654444455666788899888 554 2  2335676766432 2334444443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2e-05  Score=68.55  Aligned_cols=68  Identities=29%  Similarity=0.291  Sum_probs=52.2

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++|+||| .|.||.+||..|.++|+.|++|+ ++++                                       +++ +
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~---------------------------------------l~e~~  199 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD---------------------------------------LPAVC  199 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC---------------------------------------HHHHH
Confidence            7899999 89999999999999999999995 5532                                       122 4


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +.||+||.|++.+..+...+       ++++++++..
T Consensus       200 ~~ADIVIsavg~~~~v~~~~-------lk~GavVIDv  229 (296)
T PRK14188        200 RRADILVAAVGRPEMVKGDW-------IKPGATVIDV  229 (296)
T ss_pred             hcCCEEEEecCChhhcchhe-------ecCCCEEEEc
Confidence            57999999998765443322       6677776643

>PRK04148 hypothetical protein; Provisional

Probab=98.00  E-value=6.8e-05  Score=57.24  Aligned_cols=95  Identities=23%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|.+||+| -|..+|..|++.|++|+.+|.+++.++.+++           .+.      ....+.+ +..+++--+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~------~~v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGL------NAFVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCC------eEEECcC-CCCCHHHHhcC
Confidence            679999999 8999999999999999999999998776622           221      0000111 12223336899


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      |+|-.+-|. .+ .+.-+.+|.+...-+.+|..-+.
T Consensus        79 ~liysirpp-~e-l~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         79 KLIYSIRPP-RD-LQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             CEEEEeCCC-HH-HHHHHHHHHHHcCCCEEEEcCCC
Confidence            999998874 33 34455567777777777765444

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.98  E-value=3.2e-05  Score=68.60  Aligned_cols=104  Identities=15%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCceEE
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGT-DAPRRLRC   75 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~   75 (297)
                      ||+|||+ |.+|+.+|..|+..|.       ++.++|++++.  ++.....+.+               .. .....+..
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d---------------~~~~~~~~~~~   65 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD---------------CAFPLLDGVVP   65 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc---------------ccchhcCceec
Confidence            5999999 9999999999998655       59999996542  2211101110               00 11122333


Q ss_pred             e-cCcccccCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           76 T-SNLKDLHSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        76 ~-~~~~~~~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      + ++++++++||+||.+.-.  .            ..+.+++..+|.++++++++++..|..+++
T Consensus        66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv  130 (324)
T TIGR01758        66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT  130 (324)
T ss_pred             cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence            3 346779999999986521  1            122444555677776566666555555444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.96  E-value=4.6e-05  Score=69.67  Aligned_cols=85  Identities=31%  Similarity=0.356  Sum_probs=60.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .+ .++++ +++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-----------~~~G~-------------~v-~~l~eal~~  267 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-----------AMDGF-------------RV-MTMEEAAEL  267 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-----------HhcCC-------------Ee-cCHHHHHhC
Confidence            689999999999999999999999999999998765433           22221             11 12333 678


Q ss_pred             CcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~t  120 (297)
                      +|+||++.....     ++. +.-..++++++++...
T Consensus       268 aDVVI~aTG~~~-----vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        268 GDIFVTATGNKD-----VITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             CCEEEECCCCHH-----HHHHHHHhcCCCCCEEEEcC
Confidence            999999874322     332 4445677888776433

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.91  E-value=4.9e-05  Score=66.83  Aligned_cols=104  Identities=18%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      -++|+|+|+|.+|..+|.+|...|..+.-+.|++...+..           .+.+.              -..|.++ ++
T Consensus       162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-----------~~~~~--------------~~~d~~~~~~  216 (336)
T KOG0069|consen  162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-----------YEYYA--------------EFVDIEELLA  216 (336)
T ss_pred             CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-----------HHhcc--------------cccCHHHHHh
Confidence            3799999999999999999999994444555655544433           11111              1334455 88


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS  133 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~  133 (297)
                      .+|+|+.|.|-..+...-+-+++-..++++.+|+...-+--+  +.+.+.+.
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~  268 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK  268 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence            999999999999987666667788889999988844433332  45666553

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.90  E-value=0.00018  Score=58.03  Aligned_cols=74  Identities=19%  Similarity=0.365  Sum_probs=48.8

Q ss_pred             EEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            7 VMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ||+|||+|..-.+.-..  +..    .+-++.++|+++++++....-.+...+.   .|.         .-++..++|.+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~---~~~---------~~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE---AGA---------DLKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH---CTT---------SSEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh---cCC---------CeEEEEeCCHH
Confidence            79999999986664332  332    2348999999999988765544444321   221         23467788887


Q ss_pred             c-ccCCcEEEEec
Q 022407           81 D-LHSADIIVEAI   92 (297)
Q Consensus        81 ~-~~~aD~Vi~~v   92 (297)
                      + +++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            7 99999999875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.89  E-value=9.3e-05  Score=61.70  Aligned_cols=32  Identities=38%  Similarity=0.565  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~   37 (297)
                      .+|+|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            5899999999999999999999985 9999998

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.89  E-value=6.5e-05  Score=65.55  Aligned_cols=74  Identities=22%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (297)
                      ++|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+.+.+..      ..          ..+...++.. .++
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            589999999999999999999998 79999999988877644432110      00          0111122323 367


Q ss_pred             CCcEEEEecccC
Q 022407           84 SADIIVEAIVES   95 (297)
Q Consensus        84 ~aD~Vi~~v~e~   95 (297)
                      ++|+||.|+|-.
T Consensus       192 ~aDiVInaTp~G  203 (284)
T PRK12549        192 AADGLVHATPTG  203 (284)
T ss_pred             CCCEEEECCcCC
Confidence            899999988743

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=2.2e-05  Score=67.75  Aligned_cols=69  Identities=32%  Similarity=0.344  Sum_probs=52.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||. |.||.+||..|.++|+.|++|...                                      +.++++ ++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------------------------------t~~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------------------------------TRNLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------------------------------CCCHHHHHh
Confidence            78999999 999999999999999999999321                                      123343 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.+++.+..++..       +++++++++..
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDv  229 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDV  229 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEe
Confidence            899999999876654443       36777776643

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.88  E-value=0.00012  Score=61.74  Aligned_cols=75  Identities=20%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ..||.|+|.|.+|.+.|..++..|.  ++.++|.++++++...=.        .++|.     .--...++....|+..-
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s   86 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS   86 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence            4689999999999999999888775  899999999876543111        12221     01123556666788888


Q ss_pred             cCCcEEEEec
Q 022407           83 HSADIIVEAI   92 (297)
Q Consensus        83 ~~aD~Vi~~v   92 (297)
                      +++++||.+.
T Consensus        87 a~S~lvIiTA   96 (332)
T KOG1495|consen   87 ANSKLVIITA   96 (332)
T ss_pred             CCCcEEEEec
Confidence            9999999876

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.85  E-value=7.4e-05  Score=64.80  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=37.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .++|.|+|+|.+|++++..|+..|++|++++|++++.+.+.+
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            368999999999999999999999999999999887766543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.81  E-value=0.00011  Score=65.60  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|.+|...+..|+ ..+. +|++|+|++++.+++.+++.+.      .|.           .+...++.++ 
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~------~g~-----------~v~~~~~~~~a  191 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL------LGI-----------DVTAATDPRAA  191 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh------cCc-----------eEEEeCCHHHH
Confidence            368999999999999999886 4664 6999999999988775554311      111           1234566665 


Q ss_pred             ccCCcEEEEecccCH
Q 022407           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +++||+|+.|.|...
T Consensus       192 v~~aDiVvtaT~s~~  206 (326)
T TIGR02992       192 MSGADIIVTTTPSET  206 (326)
T ss_pred             hccCCEEEEecCCCC
Confidence            889999999997644

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.80  E-value=0.00069  Score=56.05  Aligned_cols=126  Identities=17%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec---Cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS---NLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~   81 (297)
                      ++|.|||+|.+|...+..|.++|.+|++++++.. .+...           .+.+.            +.+..   ..++
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~------------i~~~~~~~~~~~   67 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGK------------IRWKQKEFEPSD   67 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCC------------EEEEecCCChhh
Confidence            6899999999999999999999999999987542 12211           22232            12211   1234


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~  159 (297)
                      +.++|+||.|..+ .++.+.+.    +.+..+.+ + |...           .|..   ..|+.|..  ..++.--+.+.
T Consensus        68 l~~adlViaaT~d-~elN~~i~----~~a~~~~l-v-n~~d-----------~~~~---~~f~~Pa~~~~g~l~iaIsT~  126 (202)
T PRK06718         68 IVDAFLVIAATND-PRVNEQVK----EDLPENAL-F-NVIT-----------DAES---GNVVFPSALHRGKLTISVSTD  126 (202)
T ss_pred             cCCceEEEEcCCC-HHHHHHHH----HHHHhCCc-E-EECC-----------CCcc---CeEEEeeEEEcCCeEEEEECC
Confidence            8899999988754 44444443    33333333 2 2211           1111   23334432  22333334555


Q ss_pred             CChHHHHHHHHHHHHH
Q 022407          160 DTSDETFRATKALAER  175 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~  175 (297)
                      +.+|.....++.-++.
T Consensus       127 G~sP~la~~lr~~ie~  142 (202)
T PRK06718        127 GASPKLAKKIRDELEA  142 (202)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            6788777777766655

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=0.00012  Score=65.25  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..++ ..+. +|.+|+|++++.+++.+.++..      .+           -.+...++.++ 
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~------~~-----------~~~~~~~~~~~~  189 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK------FN-----------TEIYVVNSADEA  189 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh------cC-----------CcEEEeCCHHHH
Confidence            478999999999998887765 3454 7999999999887775544321      11           11234566665 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ++++|+||.|.|...    .++.   ..+++++.|.+..+
T Consensus       190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs  222 (325)
T PRK08618        190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS  222 (325)
T ss_pred             HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence            789999999998653    2332   34567776654433

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.80  E-value=4.4e-05  Score=68.66  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC---c-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN---L-   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-   79 (297)
                      ++|.|||+|.+|+.+|..|+++| ++|++.||+.++.+++.....         +.+         ..+.+ ..+   + 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v---------~~~~vD~~d~~al~   63 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKV---------EALQVDAADVDALV   63 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccc---------eeEEecccChHHHH
Confidence            68999999999999999999999 899999999998887732211         011         11111 111   2 


Q ss_pred             ccccCCcEEEEecccCHH
Q 022407           80 KDLHSADIIVEAIVESED   97 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~   97 (297)
                      +.+++.|+||.|+|-...
T Consensus        64 ~li~~~d~VIn~~p~~~~   81 (389)
T COG1748          64 ALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             HHHhcCCEEEEeCCchhh
Confidence            227888999999986554

>PLN02494 adenosylhomocysteinase

Probab=97.79  E-value=0.0001  Score=67.76  Aligned_cols=86  Identities=26%  Similarity=0.365  Sum_probs=60.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .+. ++++ ++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-----------~~~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-----------LMEGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-----------HhcCC-------------eec-cHHHHHhh
Confidence            789999999999999999999999999999998764333           22332             111 3344 778


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +|+||++.....    .+..+.-+.++++++++...
T Consensus       310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcC
Confidence            999998765322    22234445678888777433

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.77  E-value=0.00015  Score=64.20  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCC
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTD   37 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G--~~V~~~d~~   37 (297)
                      +++||+|||+ |.+|+.+|..|+..+  .++.++|++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            3579999999 999999999999655  589999993

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.77  E-value=0.00032  Score=64.43  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=49.5

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMD-----GLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      +||+|||+|..-. .+...|++.     +-+|+++|++ +++++......++..+.   .|.         .-++..++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~---~~~---------~~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKK---AGL---------PIKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHh---hCC---------CeEEEEeCC
Confidence            4899999998733 333445542     3589999999 78876654444433221   121         124667888


Q ss_pred             ccc-ccCCcEEEEec
Q 022407           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +.+||+||.++
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            876 89999999876

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.76  E-value=5.4e-05  Score=60.24  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=35.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||+|||+ |..|+.|+....+.||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999999 999999999999999999999999988754

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.76  E-value=0.00055  Score=63.01  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             cEEEEECCChh-HHHHHHHHHH-----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVM-----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~-----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.. ...+...|++     .+-+|+++|+++++++......++..++   .|.         .-++..++|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~---~g~---------~~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEE---VGA---------DIKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHh---hCC---------CeEEEEeCCH
Confidence            48999999984 3334444553     3468999999999987744333333221   121         1246778888


Q ss_pred             cc-ccCCcEEEEec
Q 022407           80 KD-LHSADIIVEAI   92 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v   92 (297)
                      ++ +++||+||.++
T Consensus        69 ~~Al~gADfVi~~i   82 (425)
T cd05197          69 EDAIIDADFVINQF   82 (425)
T ss_pred             HHHhCCCCEEEEee
Confidence            76 99999999775

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.75  E-value=5.3e-05  Score=69.79  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..++..|...| .+|++++++.++.+...+          +.|.          ..+ ..++..+ +.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~----------~~g~----------~~i-~~~~l~~~l~  239 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAK----------ELGG----------EAV-KFEDLEEYLA  239 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----------HcCC----------eEe-eHHHHHHHHh
Confidence            68999999999999999999999 789999999887654421          1111          001 1123333 77


Q ss_pred             CCcEEEEecccCH
Q 022407           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|++...
T Consensus       240 ~aDvVi~aT~s~~  252 (417)
T TIGR01035       240 EADIVISSTGAPH  252 (417)
T ss_pred             hCCEEEECCCCCC
Confidence            8999999986543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.74  E-value=0.00057  Score=51.31  Aligned_cols=69  Identities=20%  Similarity=0.378  Sum_probs=51.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.+|......+...  +.+|. ++|+++++.+.+.+          ..|             +...+|.++ 
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~----------~~~-------------~~~~~~~~~l   57 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE----------KYG-------------IPVYTDLEEL   57 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTT-------------SEEESSHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH----------Hhc-------------ccchhHHHHH
Confidence            3899999999999999888776  45654 88999988776521          112             236667776 


Q ss_pred             cc--CCcEEEEecccCHH
Q 022407           82 LH--SADIIVEAIVESED   97 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~   97 (297)
                      ++  +.|+|+.++|...+
T Consensus        58 l~~~~~D~V~I~tp~~~h   75 (120)
T PF01408_consen   58 LADEDVDAVIIATPPSSH   75 (120)
T ss_dssp             HHHTTESEEEEESSGGGH
T ss_pred             HHhhcCCEEEEecCCcch
Confidence            44  79999999998764

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.74  E-value=0.00016  Score=64.24  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDG-------LDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .||+|+|+ |.+|+.++..|+..+       .+|.++|+++..  ++...-.+.+        ..      .....+++.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d--------~~------~~~~~~~~~   68 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD--------CA------FPLLKSVVA   68 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh--------cc------ccccCCcee
Confidence            58999999 999999999998854       589999996531  2111000000        00      011123444


Q ss_pred             ecCc-ccccCCcEEEEeccc------C-H-------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           76 TSNL-KDLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        76 ~~~~-~~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..++ +++++||+||.+.--      + .       .+.+++...+.++++++++++..|+.+++
T Consensus        69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~  133 (325)
T cd01336          69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANT  133 (325)
T ss_pred             cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHH
Confidence            5564 669999999987521      1 1       12245556677777667766545544443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.73  E-value=0.00017  Score=59.30  Aligned_cols=92  Identities=24%  Similarity=0.384  Sum_probs=58.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ++|++||||.+|..+...+-..  .+ -|.+||++.+++..+.+.          .+           .  ...+++++ 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-----------~--~~~s~ide~   57 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-----------R--RCVSDIDEL   57 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-----------C--CccccHHHH
Confidence            4799999999999998776543  24 477999999987665211          11           1  23367777 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++.|+++||..-+ .+++-+.+.|++  .-+.|+. ++..+.
T Consensus        58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~-SVGALa   96 (255)
T COG1712          58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVM-SVGALA   96 (255)
T ss_pred             hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEE-echhcc
Confidence            69999999998532 223323222333  2245555 455555

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.72  E-value=0.00055  Score=63.18  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|.. +..+...|++.     +-+|+++|+++++++......++.    .++..        ..-++..++|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~----~~~~g--------~~~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKIL----FKENY--------PEIKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEECCH
Confidence            58999999985 22344445433     458999999999887744333333    32211        11246778888


Q ss_pred             cc-ccCCcEEEEec
Q 022407           80 KD-LHSADIIVEAI   92 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v   92 (297)
                      .+ +++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence            76 99999999775

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.72  E-value=0.00017  Score=63.56  Aligned_cols=91  Identities=11%  Similarity=0.160  Sum_probs=61.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..+.. .+. +|.+|+|++++.+++.+++++       .+.           .+. .++.++ 
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a  185 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI  185 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence            4789999999999999999864 564 799999999988876544321       110           112 345554 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +.++|+||.|.|....+    +.   ..+++++.|....+
T Consensus       186 v~~aDiVitaT~s~~Pl----~~---~~~~~g~hi~~iGs  218 (304)
T PRK07340        186 PEAVDLVVTATTSRTPV----YP---EAARAGRLVVAVGA  218 (304)
T ss_pred             hhcCCEEEEccCCCCce----eC---ccCCCCCEEEecCC
Confidence            88999999999865532    22   13466665554333

>PRK05086 malate dehydrogenase; Provisional

Probab=97.70  E-value=0.00028  Score=62.42  Aligned_cols=100  Identities=20%  Similarity=0.304  Sum_probs=58.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecC-
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVM---DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSN-   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-   78 (297)
                      +||+|||+ |.+|+.++..+..   .+++++++|+++.. +..      .++  ....        .....++.  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~------alD--l~~~--------~~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGV------AVD--LSHI--------PTAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cce------ehh--hhcC--------CCCceEEEeCCCCH
Confidence            58999999 9999999998854   35689999998542 110      000  0100        00112222  345 


Q ss_pred             cccccCCcEEEEeccc--C-----HH-------HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           79 LKDLHSADIIVEAIVE--S-----ED-------VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e--~-----~~-------~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .++++++|+||.|.-.  +     .+       +.+++...+.++. ++.+++..|...
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~  121 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPV  121 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence            4568999999998732  1     11       3344555566664 455555444444

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.68  E-value=8.9e-05  Score=68.48  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..++..|...|. +|+++++++++.+.+.+.          .|.           .....++..+ +.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l~  241 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG-----------EAIPLDELPEALA  241 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC-----------cEeeHHHHHHHhc
Confidence            689999999999999999999997 799999999876654211          111           0111123333 67


Q ss_pred             CCcEEEEecccCH
Q 022407           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|++.+.
T Consensus       242 ~aDvVI~aT~s~~  254 (423)
T PRK00045        242 EADIVISSTGAPH  254 (423)
T ss_pred             cCCEEEECCCCCC
Confidence            8999999987544

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.68  E-value=0.00022  Score=62.17  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=51.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-KDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   83 (297)
                      ++|.|+|+|.+|++++..|+..| .+|++++|+.++++.+.+.+..       .+            .+.+..+. +.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            68999999999999999999999 6899999999887766433210       00            01121122 3367


Q ss_pred             CCcEEEEecccCH
Q 022407           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|+|-..
T Consensus       185 ~~DivInaTp~g~  197 (278)
T PRK00258        185 DFDLIINATSAGM  197 (278)
T ss_pred             cCCEEEECCcCCC
Confidence            8999999997544

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.67  E-value=0.00027  Score=62.19  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=56.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.+|...+..++. ..+ +|.+|+|++++.+++.+++++.+      |           -.+...++.++
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~e  178 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEA  178 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHH
Confidence            35789999999999988887665 233 79999999999888765554211      1           12455667766


Q ss_pred             -ccCCcEEEEecccCH
Q 022407           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       +++||+|+.+.+...
T Consensus       179 av~~aDIV~taT~s~~  194 (301)
T PRK06407        179 ALRDADTITSITNSDT  194 (301)
T ss_pred             HHhcCCEEEEecCCCC
Confidence             899999999987644

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.67  E-value=0.00033  Score=53.00  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=57.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMD-GLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      ||+|+|+ |.+|..++..+... ++++..+ +++.+..+.+..          ..+.+.        ..+...-+.+.  
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~   62 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE   62 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence            5899995 99999999999884 8887765 654322222100          000000        00000111122  


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ..++|+||.|+|.+...  ++...+.+.+.++++++..++++.
T Consensus        63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence            24899999999987653  333333445577888887777654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.65  E-value=0.00018  Score=64.25  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..+.. .+ .+|++|+|++++.+++.+.+++.+      |           -.+...+++++ 
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~a  194 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEA  194 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHH
Confidence            3689999999999998888775 45 579999999999887755443211      1           11234566655 


Q ss_pred             ccCCcEEEEecccCH
Q 022407           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +++||+|+.|.|...
T Consensus       195 l~~aDiVi~aT~s~~  209 (330)
T PRK08291        195 VAGADIIVTTTPSEE  209 (330)
T ss_pred             HccCCEEEEeeCCCC
Confidence            789999999987643

>PLN00203 glutamyl-tRNA reductase

Probab=97.62  E-value=0.00011  Score=69.02  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++|+|||+|.||..++..|...|. +|++++|+.++.+.+.+..         .+. .        -.+...++..+ +
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~---------~g~-~--------i~~~~~~dl~~al  327 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF---------PDV-E--------IIYKPLDEMLACA  327 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh---------CCC-c--------eEeecHhhHHHHH
Confidence            3689999999999999999999997 6999999998877652211         010 0        00111233333 7


Q ss_pred             cCCcEEEEecccCH-HHHHHHHHHHH
Q 022407           83 HSADIIVEAIVESE-DVKKKLFSELD  107 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~-~~k~~~~~~l~  107 (297)
                      .++|+||.|++... .+..+.++.+.
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEALP  353 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence            89999999975433 23445555543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.59  E-value=0.00034  Score=67.01  Aligned_cols=96  Identities=14%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~   83 (297)
                      .+|.|+|+|.+|+.+|..|.+.|++|+++|.|+++.+.+           .+.|..      ...+..+-.+.++  .++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-----------~~~g~~------~i~GD~~~~~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-----------RERGIR------AVLGNAANEEIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHCCCe------EEEcCCCCHHHHHhcCcc
Confidence            478999999999999999999999999999999988776           222321      0000000001112  267


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +||.++.+++++.+.. .+...+.+..+.-.+++..
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~  515 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARA  515 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence            8999999998876543 2333344444444566543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.59  E-value=0.0017  Score=48.41  Aligned_cols=89  Identities=20%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc------c-
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL------K-   80 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~-   80 (297)
                      |.|+|+|.+|..++..|.+.+.+|+++|.+++..+.+           .+.|..            ....|.      + 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-----------~~~~~~------------~i~gd~~~~~~l~~   57 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-----------REEGVE------------VIYGDATDPEVLER   57 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-----------HHTTSE------------EEES-TTSHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-----------Hhcccc------------cccccchhhhHHhh
Confidence            5799999999999999999777999999999988776           344420            111221      1 


Q ss_pred             -cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           81 -DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        81 -~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                       .+.+|+.||.+.+++.. ...+...+.+..+.-.+++...
T Consensus        58 a~i~~a~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   58 AGIEKADAVVILTDDDEE-NLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             TTGGCESEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred             cCccccCEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence             26789999999886643 3334344555555556666433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.59  E-value=0.00056  Score=60.55  Aligned_cols=94  Identities=15%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++...+..+...  -.+|++|+|++++.+++.+.+++       .+           -.+...++.++
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~  188 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAE  188 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHH
Confidence            357899999999999998876642  34899999999998877544321       11           12345666665


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.|.+....+    |.  .+++++++.|....+
T Consensus       189 av~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs  223 (315)
T PRK06823        189 VAHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGA  223 (315)
T ss_pred             HhcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCC
Confidence             89999999998754422    21  134566766654433

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.59  E-value=0.00032  Score=63.93  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=34.0

Q ss_pred             cEEEEECCChhHHHH-HHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGI-AQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |||.++|+|.||++. +..|.++|++|+++|++++.++++
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL   40 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL   40 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            479999999999855 778899999999999988877665

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.58  E-value=0.00035  Score=67.42  Aligned_cols=99  Identities=20%  Similarity=0.158  Sum_probs=66.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~   83 (297)
                      .+|.|+|.|.+|..++..|.+.|++++++|.|+++++.+           .+.|..      ...+..+-.+.++  .+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-----------~~~g~~------v~~GDat~~~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-----------RKYGYK------VYYGDATQLELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-----------HhCCCe------EEEeeCCCHHHHHhcCCc
Confidence            579999999999999999999999999999999988776           223321      0000000001112  267


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      +||.+|.+++++... ..+...+.+..++-.|++...+.
T Consensus       464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCCH
Confidence            899999999876543 33444556666666677755443

>PRK06046 alanine dehydrogenase; Validated

Probab=97.58  E-value=0.00037  Score=62.13  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=61.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.+|...+..++. .+. .|.+||+++++.+++.+.+++.      .+           ..+...++.++ 
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~  191 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEA  191 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHH
Confidence            4789999999999999988874 343 6889999999888775543211      01           11344566666 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ++ +|+|+.|.|....+    |.  .+++++++.|.+..+
T Consensus       192 l~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs  224 (326)
T PRK06046        192 CD-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGA  224 (326)
T ss_pred             hh-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence            55 99999999864422    11  134566666654433

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00044  Score=61.19  Aligned_cols=95  Identities=15%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ....++|||+|.++......+.. . .-+|.+|+|+++..++...++++.       +.          ..+...++.++
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~  191 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE  191 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence            35789999999999999888765 2 348999999999988875544322       11          12345666665


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+|+.|.|.+..+.      ..+++++++-|....+
T Consensus       192 av~~aDiIvt~T~s~~Pil------~~~~l~~G~hI~aiGa  226 (330)
T COG2423         192 AVEGADIVVTATPSTEPVL------KAEWLKPGTHINAIGA  226 (330)
T ss_pred             HhhcCCEEEEecCCCCCee------cHhhcCCCcEEEecCC
Confidence             899999999998765321      1245567776654443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.56  E-value=0.00029  Score=60.61  Aligned_cols=67  Identities=22%  Similarity=0.352  Sum_probs=46.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +||+|+|+ |.||..++..+.+ .++++. ++|+++++....            ..            ..+...+++++ 
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            58999999 9999999988876 467766 588887643221            00            11234566665 


Q ss_pred             ccCCcEEEEecccCH
Q 022407           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      ++++|+||++.+.+.
T Consensus        58 l~~~DvVid~t~p~~   72 (257)
T PRK00048         58 LADADVLIDFTTPEA   72 (257)
T ss_pred             ccCCCEEEECCCHHH
Confidence            568999998886444

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.56  E-value=0.00027  Score=61.64  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|||+|-+|++++..|+..|. +|++++|+.++.+++.+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            589999999999999999999997 69999999988777643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.54  E-value=0.00013  Score=60.04  Aligned_cols=42  Identities=33%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|+|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~   71 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS   71 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            68999996 9999999999999999999999998877665433

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.54  E-value=0.00025  Score=66.39  Aligned_cols=70  Identities=20%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++++|+|+|.+|.+++..|++.|++|++++++.++.+.+.+...         +.            .....+..++.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~---------~~------------~~~~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ---------GK------------AFPLESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------cc------------eechhHhcccCCC
Confidence            68999999999999999999999999999999887665422110         00            0011223335789


Q ss_pred             cEEEEecccCH
Q 022407           86 DIIVEAIVESE   96 (297)
Q Consensus        86 D~Vi~~v~e~~   96 (297)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998765

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=97.53  E-value=0.0032  Score=53.44  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             eEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH---HhhhcCC-CCeEEEeecCCCC
Q 022407           73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR---LASATSR-PCQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~---l~~~~~~-~~~~~g~h~~~p~  147 (297)
                      ++++ +|.+.++++|++|...|.... ...+++++.+.+++++||+ +|.++++..   +.+.+.+ ...+..+||-.-|
T Consensus       127 vkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP  204 (340)
T TIGR01723       127 LKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP  204 (340)
T ss_pred             ceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence            3444 455669999999999986552 2467888889999999887 677777653   3344443 2345556665444


Q ss_pred             CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ..-..+=++.+ -.+++.++++..+.+..++.++.+.
T Consensus       205 gt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~P  240 (340)
T TIGR01723       205 EMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMP  240 (340)
T ss_pred             CCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecc
Confidence            33333334444 3678899999999999999998773

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.53  E-value=0.00039  Score=57.57  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            589999999999999999999998 899999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.52  E-value=0.00018  Score=57.55  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             cEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.| |..+|..|.+.|.+|++.+++.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~   79 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK   79 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence            78999999997 88899999999999999998743

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=97.51  E-value=0.0033  Score=53.26  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=73.8

Q ss_pred             eEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhh---cCC-CCeEEEeecCCCC
Q 022407           73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA---TSR-PCQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~---~~~-~~~~~g~h~~~p~  147 (297)
                      ++++ +|.+.++++|++|...|-... ...+++++.+.+++++||+ +|.++++..+...   +.+ ...+..+||-.-|
T Consensus       129 vkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP  206 (342)
T PRK00961        129 LKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP  206 (342)
T ss_pred             ceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            3444 455669999999999986552 2467888889999999887 7777777544433   332 2335555655444


Q ss_pred             CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ..-+.+-+-. .-.+++.++++..+.+..++.++.+.
T Consensus       207 gt~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~P  242 (342)
T PRK00961        207 EMKGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMP  242 (342)
T ss_pred             CCCCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            3222222222 23688999999999999999998773

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.51  E-value=0.0012  Score=54.71  Aligned_cols=128  Identities=16%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-c--Cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-S--NLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~   81 (297)
                      ++|.|||.|.+|..-+..|++.|.+|++++.+.. .+..           +.+.|.            +.+. .  ...+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~d   66 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGG------------ITWLARCFDADI   66 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCC------------EEEEeCCCCHHH
Confidence            6899999999999999999999999999987654 1111           233333            2221 1  2234


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~  159 (297)
                      +.++|+||.+.. +.++...+...    +....+++...+.+            +.   ..|+.|..  ..++.--+.+.
T Consensus        67 l~~~~lVi~at~-d~~ln~~i~~~----a~~~~ilvn~~d~~------------e~---~~f~~pa~~~~g~l~iaisT~  126 (205)
T TIGR01470        67 LEGAFLVIAATD-DEELNRRVAHA----ARARGVPVNVVDDP------------EL---CSFIFPSIVDRSPVVVAISSG  126 (205)
T ss_pred             hCCcEEEEECCC-CHHHHHHHHHH----HHHcCCEEEECCCc------------cc---CeEEEeeEEEcCCEEEEEECC
Confidence            889999998754 44444444443    33323333222111            10   12334432  22333335555


Q ss_pred             CChHHHHHHHHHHHHHh
Q 022407          160 DTSDETFRATKALAERF  176 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~l  176 (297)
                      +.+|.....++.-++.+
T Consensus       127 G~sP~la~~lr~~ie~~  143 (205)
T TIGR01470       127 GAAPVLARLLRERIETL  143 (205)
T ss_pred             CCCcHHHHHHHHHHHHh
Confidence            67777777766665553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.50  E-value=0.00064  Score=57.89  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG---LDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G---~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||..++..+...+   +++ .++++++++.+..           ...              ....+++++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~-----------~~~--------------~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL-----------AGR--------------VALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh-----------hcc--------------CcccCCHHH
Confidence            58999999999999999986542   444 4678887655443           111              235566776


Q ss_pred             --ccCCcEEEEecc
Q 022407           82 --LHSADIIVEAIV   93 (297)
Q Consensus        82 --~~~aD~Vi~~v~   93 (297)
                        ...+|+|+||..
T Consensus        58 ll~~~~DlVVE~A~   71 (267)
T PRK13301         58 LLAWRPDLVVEAAG   71 (267)
T ss_pred             HhhcCCCEEEECCC
Confidence              367999999985

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.50  E-value=0.00023  Score=62.97  Aligned_cols=93  Identities=18%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|..+..-+..++. .+. +|.+|+|++++.+++.+++++       .+           -.+...++.++ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~a  189 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEA  189 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhh
Confidence            4689999999999998887654 444 799999999988887555432       11           23456677766 


Q ss_pred             ccCCcEEEEecccCH--HHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESE--DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~--~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++||+|+.|.+...  .+    +.  .+++++++.|....+
T Consensus       190 v~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs  225 (313)
T PF02423_consen  190 VRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS  225 (313)
T ss_dssp             HTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred             cccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence            899999999987654  22    11  235667776664444

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.49  E-value=0.002  Score=56.41  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=82.3

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .-|||+||+|.||+.|+...+ -.|.+|. +-|++.+...++.++.-..-...++.-..+.-......+++.+++|.+.+
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i   96 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI   96 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence            358999999999999998865 4799877 45788776655533211000000010000000111122456677777663


Q ss_pred             ---cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-----CccHHHHhhhcCCCCeEEEeecCCCCCCCccee
Q 022407           83 ---HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-----SISITRLASATSRPCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        83 ---~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-----~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve  154 (297)
                         ..-|+||++.--...--+..+..|.   ....++..|.-     +.-..+.+..+       |.            .
T Consensus        97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gv------------i  154 (438)
T COG4091          97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADAA-------GV------------I  154 (438)
T ss_pred             hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhhc-------Ce------------E
Confidence               4568889876432221222233332   33445544431     11112222221       11            1


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          155 VIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ...+.+..|...-.+.+|.+++|.+++..+
T Consensus       155 yS~~~GDeP~~~mEL~efa~a~G~evv~aG  184 (438)
T COG4091         155 YSGGAGDEPSSCMELYEFASALGFEVVSAG  184 (438)
T ss_pred             EeccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence            222334556677777888888999888764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.49  E-value=0.00064  Score=60.75  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            589999999999999999999998 899999985

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.48  E-value=0.01  Score=52.63  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc---cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL---KD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~   81 (297)
                      ++|+|+|+|-+|. ||..+++ .|.+|+.+|+++++++.+           .+.|+-          .+....+.   +.
T Consensus       168 ~~V~I~G~GGlGh-~avQ~Aka~ga~Via~~~~~~K~e~a-----------~~lGAd----------~~i~~~~~~~~~~  225 (339)
T COG1064         168 KWVAVVGAGGLGH-MAVQYAKAMGAEVIAITRSEEKLELA-----------KKLGAD----------HVINSSDSDALEA  225 (339)
T ss_pred             CEEEEECCcHHHH-HHHHHHHHcCCeEEEEeCChHHHHHH-----------HHhCCc----------EEEEcCCchhhHH
Confidence            6899999997775 5555665 799999999999998876           444431          11111111   12


Q ss_pred             cc-CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCC-CCCcceeEecCC
Q 022407           82 LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP-PLMKLVEVIRGA  159 (297)
Q Consensus        82 ~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~-~~~~~vev~~~~  159 (297)
                      ++ .+|++|++++ +..+.    ..+.-+.+.++++...--.  ..          ....   +.+. .+.....|..+.
T Consensus       226 ~~~~~d~ii~tv~-~~~~~----~~l~~l~~~G~~v~vG~~~--~~----------~~~~---~~~~~li~~~~~i~GS~  285 (339)
T COG1064         226 VKEIADAIIDTVG-PATLE----PSLKALRRGGTLVLVGLPG--GG----------PIPL---LPAFLLILKEISIVGSL  285 (339)
T ss_pred             hHhhCcEEEECCC-hhhHH----HHHHHHhcCCEEEEECCCC--Cc----------ccCC---CCHHHhhhcCeEEEEEe
Confidence            22 2888888887 44322    2233333445544311100  00          0000   0000 122335566666


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC
Q 022407          160 DTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV  210 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~  210 (297)
                      .++....+.+.+|...-+-+|.+....+        ..-+|||+.-+++|-
T Consensus       286 ~g~~~d~~e~l~f~~~g~Ikp~i~e~~~--------l~~in~A~~~m~~g~  328 (339)
T COG1064         286 VGTRADLEEALDFAAEGKIKPEILETIP--------LDEINEAYERMEKGK  328 (339)
T ss_pred             cCCHHHHHHHHHHHHhCCceeeEEeeEC--------HHHHHHHHHHHHcCC
Confidence            6677778888888888777776641111        223778888777764

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.46  E-value=0.00028  Score=63.97  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|||+|-||...|.+|+.+| .+|++.+|+.+++..+.
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La  219 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA  219 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            68999999999999999999999 58999999999887763

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.44  E-value=0.0008  Score=62.75  Aligned_cols=39  Identities=33%  Similarity=0.405  Sum_probs=36.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            489999999999999999999999999999999987765

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.43  E-value=0.00036  Score=56.45  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.8

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         8 V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence            789997 999999999999999999999999986543

...

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.43  E-value=0.00072  Score=51.08  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             EEEEEC-CChhHHHHHHHHHHC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Ccccc
Q 022407            7 VMGVVG-SGQMGSGIAQLGVMD-GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKDL   82 (297)
Q Consensus         7 ~V~iiG-~G~mG~~iA~~l~~~-G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~   82 (297)
                      ||+||| .|.+|..+...|+++ .++ +.++.++.+.-.....    .    ..        .......+.+.+ +.+++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~----~~--------~~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----V----FP--------HPKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----T----TG--------GGTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----h----cc--------ccccccceeEeecchhHh
Confidence            799999 799999999999985 334 4466666521111100    0    00        000012233433 44558


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .++|+||.|+|...  ..++..++   .+.+..++.+++..
T Consensus        65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF  100 (121)
T ss_dssp             TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred             hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence            99999999998654  33444433   45677777777755

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.41  E-value=0.0044  Score=60.79  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             EEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecCCCCCCCc------------c
Q 022407           88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPPLMK------------L  152 (297)
Q Consensus        88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~~~~------------~  152 (297)
                      ||.|+|-  .....++.++.+++++++++...+|.-.  .+.+.+.++. ..+|+|.||+..+...+            .
T Consensus         1 vila~Pv--~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAPV--AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcCH--HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            5788874  4466888999999999998875555432  3555555543 35799999998775443            2


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +-+++...++++.++++.++++.+|.+++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            55777778899999999999999999988774

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.40  E-value=0.00033  Score=64.23  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (297)
                      ++|.|||+|.||..++..|+..|. ++++++|+.++.+.+.+.+          +.          ......+++. .+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~----------~~----------~~~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF----------RN----------ASAHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh----------cC----------CeEecHHHHHHHhc
Confidence            689999999999999999999996 7999999988776653221          10          0011223333 378


Q ss_pred             CCcEEEEecccCH
Q 022407           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|++.+.
T Consensus       242 ~aDiVI~aT~a~~  254 (414)
T PRK13940        242 KADIIIAAVNVLE  254 (414)
T ss_pred             cCCEEEECcCCCC
Confidence            8999999886533

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.38  E-value=0.0004  Score=62.96  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            579999999999999999999999999999998876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.33  E-value=0.0018  Score=56.06  Aligned_cols=73  Identities=15%  Similarity=0.320  Sum_probs=44.4

Q ss_pred             cEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|+| +|.||..++..+.. .++++. ++|++ ++....-       ... . .+.        ....+.+++++++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~-------~~~-~-~~~--------~~~gv~~~~d~~~   64 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTD-------AGE-L-AGI--------GKVGVPVTDDLEA   64 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCC-------HHH-h-cCc--------CcCCceeeCCHHH
Confidence            5899999 59999999999886 578766 67843 3221100       000 0 010        0011345677766


Q ss_pred             c-cCCcEEEEecccC
Q 022407           82 L-HSADIIVEAIVES   95 (297)
Q Consensus        82 ~-~~aD~Vi~~v~e~   95 (297)
                      + ..+|+||++.+.+
T Consensus        65 l~~~~DvVIdfT~p~   79 (266)
T TIGR00036        65 VETDPDVLIDFTTPE   79 (266)
T ss_pred             hcCCCCEEEECCChH
Confidence            4 4689999998643

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.32  E-value=0.0018  Score=57.94  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++++|||+|..+...+..++. . =.+|++|+|++++.+++.+++++       .+           -.+...++.++ 
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  190 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA  190 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence            4789999999999888766543 2 34899999999998887555432       11           12455677776 


Q ss_pred             ccCCcEEEEecccCH---HHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 LHSADIIVEAIVESE---DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~---~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +++||+|+.|.+...   -++.       +++++++-|....|
T Consensus       191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs  226 (346)
T PRK07589        191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGG  226 (346)
T ss_pred             HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCC
Confidence            899999999997432   1222       34567765553333

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.31  E-value=0.0012  Score=63.97  Aligned_cols=92  Identities=18%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC---cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN---LK   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---~~   80 (297)
                      .+|-|+|+|.+|..+|..|.+.|++++++|.|+++++.++           +.|..           +-..  ++   ++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~-----------v~~GDat~~~~L~  458 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR-----------KFGMK-----------VFYGDATRMDLLE  458 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hcCCe-----------EEEEeCCCHHHHH
Confidence            5799999999999999999999999999999999888762           22320           1111  11   12


Q ss_pred             --cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           81 --DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        81 --~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                        .+++||.+|.++.++... ..+...+.+..++-.+++...
T Consensus       459 ~agi~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        459 SAGAAKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             hcCCCcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEEEEC
Confidence              267899999999765543 334344555555555666443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.31  E-value=0.0013  Score=58.89  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            589999999999999999999999 899999874

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.30  E-value=0.00075  Score=61.26  Aligned_cols=76  Identities=16%  Similarity=0.245  Sum_probs=55.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-C-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVM-D-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~-~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..++++|||+|.++......++. . . -+|.+|+|++++.+++.+++++.+.     +.          ..+...++.+
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~  218 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE  218 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence            35789999999999999988776 3 2 3899999999998887655442210     10          1245567776


Q ss_pred             c-ccCCcEEEEeccc
Q 022407           81 D-LHSADIIVEAIVE   94 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e   94 (297)
                      + +++||+|+.|.+.
T Consensus       219 eav~~ADIVvtaT~s  233 (379)
T PRK06199        219 EVVRGSDIVTYCNSG  233 (379)
T ss_pred             HHHcCCCEEEEccCC
Confidence            6 8999999998864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.28  E-value=0.0022  Score=59.77  Aligned_cols=40  Identities=30%  Similarity=0.482  Sum_probs=36.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.++++.+.+
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~  270 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL  270 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            4789999999999999999999999999999999987765

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.24  E-value=0.0015  Score=56.46  Aligned_cols=70  Identities=19%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-   82 (297)
                      +||+|||+|.||..++..+.+. +.++. +++++.. .+...+.        ...             .+.+.++++++ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence            5899999999999999998875 56655 3344322 1111000        101             13456666664 


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .+.|+|++|.+....
T Consensus        60 ~~~DvVve~t~~~~~   74 (265)
T PRK13303         60 QRPDLVVECAGHAAL   74 (265)
T ss_pred             cCCCEEEECCCHHHH
Confidence            568999999986543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.23  E-value=0.00089  Score=46.51  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987755

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.21  E-value=0.0022  Score=50.82  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ++|.|||+|.+|...+..|.+.|++|++++..
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            68999999999999999999999999999643

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.18  E-value=0.0039  Score=55.88  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGT-DAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~-   81 (297)
                      .||+|+|+|.||..++..+... +++|. +.|++++..+.+.++.  .++   -.+.. ++... .....+.+..++++ 
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~-~~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVAD-PEREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccC-ccccccccCCceEEcCChhHh
Confidence            5899999999999999887754 66766 5566654333321110  000   00000 00000 00123455566665 


Q ss_pred             ccCCcEEEEecccCHH
Q 022407           82 LHSADIIVEAIVESED   97 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~   97 (297)
                      ..++|+||+|.+....
T Consensus        76 ~~~vDVVIdaT~~~~~   91 (341)
T PRK04207         76 LEKADIVVDATPGGVG   91 (341)
T ss_pred             hccCCEEEECCCchhh
Confidence            5789999999986553

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.18  E-value=0.0027  Score=59.58  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a  204 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV  204 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3689999999999998888888999999999999988876

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0017  Score=56.31  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=38.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.+
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~  170 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF  170 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence            689999999999999999999995 7999999999988775443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.15  E-value=0.0035  Score=54.06  Aligned_cols=97  Identities=24%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCc---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNL---   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   79 (297)
                      +||++||+|.+-...-......  |..|..+|+++++.+.+++-+++.+.  +.             .++++. .|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence            5999999999976554443333  45688999999988877554442211  11             122332 222   


Q ss_pred             -ccccCCcEEEEecc--cCHHHHHHHHHHHHhhccCCeEEe
Q 022407           80 -KDLHSADIIVEAIV--ESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 -~~~~~aD~Vi~~v~--e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       .+++++|+|+.+.-  .+.+-|++++..|.+.++++++++
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~  227 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV  227 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence             23678999998752  234459999999999999988765

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.12  E-value=0.0022  Score=49.89  Aligned_cols=32  Identities=34%  Similarity=0.423  Sum_probs=29.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      +|.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 699999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.11  E-value=0.0031  Score=44.51  Aligned_cols=32  Identities=41%  Similarity=0.581  Sum_probs=28.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT   36 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~   36 (297)
                      .++++|+|+|.+|..++..+.+. +.+|++||+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            36899999999999999999998 678999986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.08  E-value=0.0019  Score=56.93  Aligned_cols=66  Identities=12%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|+|+|.||..++..+.+. ++++. ++|+++ +.+..             ..+.             ....+.++ 
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v-------------~~~~d~~e~   57 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPV-------------YAVADDEKH   57 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCc-------------cccCCHHHh
Confidence            6999999999999999888765 78877 679985 32210             0011             11223333 


Q ss_pred             ccCCcEEEEecccCHH
Q 022407           82 LHSADIIVEAIVESED   97 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~   97 (297)
                      +.++|+|+.|.|...+
T Consensus        58 l~~iDVViIctPs~th   73 (324)
T TIGR01921        58 LDDVDVLILCMGSATD   73 (324)
T ss_pred             ccCCCEEEEcCCCccC
Confidence            5789999999987665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.08  E-value=0.0029  Score=47.42  Aligned_cols=81  Identities=19%  Similarity=0.363  Sum_probs=52.6

Q ss_pred             cEEEEEC----CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVG----SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||    -+..|..+..+|.++|++|+.++...+.+                             ..+.+..++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58899999999999999999998765322                             12356677776


Q ss_pred             c-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 L-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      . ...|+++.++|.+.  ..++++++.+.-.+..++.
T Consensus        52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~g~~~v~~~   86 (116)
T PF13380_consen   52 IPEPIDLAVVCVPPDK--VPEIVDEAAALGVKAVWLQ   86 (116)
T ss_dssp             CSST-SEEEE-S-HHH--HHHHHHHHHHHT-SEEEE-
T ss_pred             CCCCCCEEEEEcCHHH--HHHHHHHHHHcCCCEEEEE
Confidence            4 78999999997433  4566777665533333343

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.07  E-value=0.0047  Score=53.96  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+++ .||+|||+|.+|..+...+.+ .+.++. ++|+++++.....         ..+.|..            ...++
T Consensus         1 ~m~k-lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~---------A~~~Gi~------------~~~~~   58 (302)
T PRK08300          1 MMSK-LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR---------ARRLGVA------------TSAEG   58 (302)
T ss_pred             CCCC-CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH---------HHHcCCC------------cccCC
Confidence            4443 589999999999997777765 356665 7899886422110         0222321            11234


Q ss_pred             ccc-c-----cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           79 LKD-L-----HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        79 ~~~-~-----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .+. +     .+.|+|+++.+...+.  +...   ...+.++.++.+++
T Consensus        59 ie~LL~~~~~~dIDiVf~AT~a~~H~--e~a~---~a~eaGk~VID~sP  102 (302)
T PRK08300         59 IDGLLAMPEFDDIDIVFDATSAGAHV--RHAA---KLREAGIRAIDLTP  102 (302)
T ss_pred             HHHHHhCcCCCCCCEEEECCCHHHHH--HHHH---HHHHcCCeEEECCc
Confidence            433 2     5689999999865542  2322   23344555555555

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.06  E-value=0.0015  Score=55.01  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc---EEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~---V~~~d~~   37 (297)
                      ++|.|+|+|.+|+++|..|...|..   |+++||+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            6899999999999999999999985   9999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.028  Score=46.61  Aligned_cols=179  Identities=12%  Similarity=0.151  Sum_probs=99.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ..|++||.|..|........+.++....+ .+++++.+.+           .+.-..             ..-+.+. ..
T Consensus        11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~L-----------aE~~~a-------------~p~d~~~~ae   66 (289)
T COG5495          11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNL-----------AETYVA-------------PPLDVAKSAE   66 (289)
T ss_pred             eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhc-----------hhccCC-------------CccchhhChh
Confidence            57999999999998776666666655433 4455444332           110000             0111121 33


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC-----CCcc-eeEec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-----LMKL-VEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-----~~~~-vev~~  157 (297)
                      -.++||..+|++.-  ..+..  ...-.+++|++.++.......+...-....--..+||..-..     ..++ -.++.
T Consensus        67 l~~~vfv~vpd~~~--s~vaa--~~~~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~  142 (289)
T COG5495          67 LLLLVFVDVPDALY--SGVAA--TSLNRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFG  142 (289)
T ss_pred             hhceEEecchHHHH--HHHHH--hcccCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEE
Confidence            46788888876532  12211  233467899987665555444433322223335567633221     1112 12333


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchh-------hhHHHHHHHHHHHHHHHHHcCCCC
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAG-------FIVNRILMPMINEAFFTLYTGVAT  212 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-------~i~nri~~~~~~Ea~~l~~~g~~~  212 (297)
                      ...+|..-...+..+...||.+++.+.+..-       -.+.+.+...+.++..+.+..+.+
T Consensus       143 i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D  204 (289)
T COG5495         143 ITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD  204 (289)
T ss_pred             eecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence            3345555666778899999999998865422       145555667778888888764443

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.01  E-value=0.00052  Score=62.69  Aligned_cols=37  Identities=35%  Similarity=0.592  Sum_probs=31.8

Q ss_pred             EEEECCChhHHHHHHHHHHCC-C-cEEEEeCCHHHHHHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDG-L-DVWLVDTDPDALVRA   44 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~   44 (297)
                      |.|+|+|.+|+.++..|++.+ + +|++.||+.+++++.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~   39 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL   39 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence            789999999999999999886 4 899999999988776

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.00  E-value=0.03  Score=46.49  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|.|||.|..|..=+..|++.|-+|+++..+.  ...+..        +.+.+.+.         .+.-.-+.+++.++
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~~   73 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDDA   73 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcCc
Confidence            689999999999999999999999999998765  222211        13333221         11112233446679


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCCCChH
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGADTSD  163 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~~~~~  163 (297)
                      ++||.|+. |.++.+.++....+.    .+++ |...           .|..   ..|+.|..  ..++.--+.+.+.+|
T Consensus        74 ~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~sP  133 (210)
T COG1648          74 FLVIAATD-DEELNERIAKAARER----RILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKSP  133 (210)
T ss_pred             eEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCCh
Confidence            99999886 455566665544432    2333 3221           1211   23444442  233443455555677


Q ss_pred             HHHHHHHHHHHH
Q 022407          164 ETFRATKALAER  175 (297)
Q Consensus       164 ~~~~~~~~l~~~  175 (297)
                      .....++.-.+.
T Consensus       134 ~la~~ir~~Ie~  145 (210)
T COG1648         134 VLARLLREKIEA  145 (210)
T ss_pred             HHHHHHHHHHHH
Confidence            777766665555

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.0035  Score=54.36  Aligned_cols=70  Identities=23%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||.|. +|.++|..|...|..|+++++....++                                     +.++.
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            7899999988 999999999999999999986532211                                     12567


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ||+||.+++...-+..       .+++++++++..
T Consensus       202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDv  229 (286)
T PRK14175        202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDV  229 (286)
T ss_pred             CCEEEECCCCCcccCH-------HHcCCCcEEEEc
Confidence            9999999975432222       245677776643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.99  E-value=0.017  Score=53.88  Aligned_cols=34  Identities=32%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|.|+|+|..|..+|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4789999999999999999999999999999985

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.97  E-value=0.0057  Score=61.99  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-GLD-------------VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDA   69 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   69 (297)
                      .+++|+|||+|.||...|..|++. +++             |++.|++.++++++.+..         .+.         
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~---------  629 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENA---------  629 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCC---------
Confidence            357999999999999999999875 334             999999988776652210         010         


Q ss_pred             CCceEE-ecCccc----ccCCcEEEEecccCHH
Q 022407           70 PRRLRC-TSNLKD----LHSADIIVEAIVESED   97 (297)
Q Consensus        70 ~~~i~~-~~~~~~----~~~aD~Vi~~v~e~~~   97 (297)
                       ..+.. .+|.++    ++++|+||.|+|...+
T Consensus       630 -~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H  661 (1042)
T PLN02819        630 -EAVQLDVSDSESLLKYVSQVDVVISLLPASCH  661 (1042)
T ss_pred             -ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence             01223 334333    3679999999998664

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.95  E-value=0.0012  Score=57.57  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=36.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|+|+|-.+++++..|++.|. +|+++||+.++.+++.+.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~  170 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            589999999999999999999997 799999999887776443

>PRK06153 hypothetical protein; Provisional

Probab=96.92  E-value=0.0037  Score=56.20  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            589999999999999999999998 89999876

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.91  E-value=0.0016  Score=58.68  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 789999875

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.87  E-value=0.02  Score=47.85  Aligned_cols=127  Identities=14%  Similarity=0.097  Sum_probs=72.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-c--Cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-S--NLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~   81 (297)
                      ++|.|||.|.++..=+..|++.|-+|+++...-. .+..           +.+.|.+            ++. .  ..++
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~d   82 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKEF   82 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChHH
Confidence            5899999999999999999999999999976432 1221           1333332            222 1  2234


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~  159 (297)
                      +.++++||.|.. +.++-+.+.    ..++...+++.+....            ..   ..|+.|..  ..++.--+.+.
T Consensus        83 l~g~~LViaATd-D~~vN~~I~----~~a~~~~~lvn~vd~p------------~~---~dFi~PAiv~rg~l~IaIST~  142 (223)
T PRK05562         83 IKDKHLIVIATD-DEKLNNKIR----KHCDRLYKLYIDCSDY------------KK---GLCIIPYQRSTKNFVFALNTK  142 (223)
T ss_pred             hCCCcEEEECCC-CHHHHHHHH----HHHHHcCCeEEEcCCc------------cc---CeEEeeeEEecCCEEEEEECC
Confidence            889999999875 555444443    3444323333222111            10   22344442  22333334555


Q ss_pred             CChHHHHHHHHHHHHH
Q 022407          160 DTSDETFRATKALAER  175 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~  175 (297)
                      +.+|.....++.-++.
T Consensus       143 G~sP~lar~lR~~ie~  158 (223)
T PRK05562        143 GGSPKTSVFIGEKVKN  158 (223)
T ss_pred             CcCcHHHHHHHHHHHH
Confidence            6677766666655544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.87  E-value=0.0061  Score=51.46  Aligned_cols=33  Identities=36%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 788997654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.86  E-value=0.006  Score=57.22  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=35.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...+..+...|..|+++|+++++++.+
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a  203 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  203 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999987665

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.81  E-value=0.0015  Score=60.00  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|.+|.++|..|+++|++|+++|+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            589999999999999999999999999999875

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.81  E-value=0.0061  Score=54.05  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |||.|.|+ |.+|+.++..|.++||+|++.+|+.++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            48999996 9999999999999999999999987643

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.81  E-value=0.0073  Score=54.71  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            589999999999999999999997 899999873

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=96.80  E-value=0.039  Score=45.41  Aligned_cols=106  Identities=19%  Similarity=0.258  Sum_probs=69.7

Q ss_pred             eEEec-CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhh---hcCCC-CeEEEeecCCCC
Q 022407           73 LRCTS-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRP-CQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~-~~~~g~h~~~p~  147 (297)
                      +.+++ |-+.+.++|+||..+|..- +...++.++.+.+++++|+. ++.+++.+.+.+   .+.+. -.+-.-|+-.-|
T Consensus       127 ~~vttddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vp  204 (343)
T COG4074         127 IVVTTDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP  204 (343)
T ss_pred             eEEecCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence            34444 4455999999999998533 24467777777888898876 677888765444   33332 244555665555


Q ss_pred             CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEE
Q 022407          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v  181 (297)
                      ...+.+-|..|. .++++++.+..+-+......+
T Consensus       205 emkgqvyiaegy-aseeavn~lyelg~karg~af  237 (343)
T COG4074         205 EMKGQVYIAEGY-ASEEAVNALYELGEKARGLAF  237 (343)
T ss_pred             cccCcEEEeccc-ccHHHHHHHHHHHHHhhcccc
Confidence            555566666664 688888988877766544443

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.76  E-value=0.0067  Score=53.02  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      +++.|+|+|-.+++++..|+..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            589999999999999999999987 8999999964

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.75  E-value=0.025  Score=50.94  Aligned_cols=38  Identities=34%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A  209 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELA  209 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH
Confidence            79999999999987777777775 788889999999877

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.75  E-value=0.0028  Score=55.49  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~   38 (297)
                      +++.|+|+|-.|++++..|+..|.+ |++++|+.
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            5789999999999999999999996 99999997

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.74  E-value=0.0076  Score=54.86  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|+|+|..|+.++..|+.+|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999999999999999999998 79999987

>PRK11579 putative oxidoreductase; Provisional

Probab=96.73  E-value=0.0087  Score=53.82  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=47.9

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |..+ .||+|||+|.+|.. .+..+.. .+.++. ++|+++++...             ..+            ...+.+
T Consensus         1 m~~~-irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~   54 (346)
T PRK11579          1 MSDK-IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVS   54 (346)
T ss_pred             CCCc-ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeC
Confidence            5443 58999999999984 4555554 467766 78998764321             111            123566


Q ss_pred             Cccc-c--cCCcEEEEecccCHHH
Q 022407           78 NLKD-L--HSADIIVEAIVESEDV   98 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~~   98 (297)
                      |+++ +  .+.|+|+.|+|...+.
T Consensus        55 ~~~ell~~~~vD~V~I~tp~~~H~   78 (346)
T PRK11579         55 EPQHLFNDPNIDLIVIPTPNDTHF   78 (346)
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH
Confidence            7776 4  3689999999987753

>PLN00016 RNA-binding protein; Provisional

Probab=96.70  E-value=0.0089  Score=54.43  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             CcEEEEE----CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            5 MKVMGVV----GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~V~ii----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .++|.|+    |+ |.+|+.++..|++.||+|++++|++..
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            4689999    76 999999999999999999999998764

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.70  E-value=0.0062  Score=53.70  Aligned_cols=90  Identities=30%  Similarity=0.334  Sum_probs=62.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +++.|.|.|..|+++|..+...|-+|.+++.+|-++-++                        ..+-+++..-.+.+..+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence            678899999999999999999999999999998653222                        11223444434457789


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      |++|.+.-....+..+-+.    ..++++|++ |.....
T Consensus       266 DifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~GHFd  299 (420)
T COG0499         266 DIFVTATGNKDVIRKEHFE----KMKDGAILA-NAGHFD  299 (420)
T ss_pred             CEEEEccCCcCccCHHHHH----hccCCeEEe-cccccc
Confidence            9999988754444333332    356677776 665443

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.69  E-value=0.019  Score=51.28  Aligned_cols=95  Identities=19%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGSGQM-GSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G~m-G~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..||||||+|.+ +...+..+.+.+.   -|.++|+++++++...+          +.|.          .  ...+|++
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~----------~~~~----------~--~~~~~~~   60 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE----------EFGI----------A--KAYTDLE   60 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH----------HcCC----------C--cccCCHH
Confidence            469999999854 4567778887763   46688999998776522          1121          0  3566777


Q ss_pred             c-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      + ++  +.|+|+.|+|.+.+. ..+...|..   ...+++--.-+.++
T Consensus        61 ~ll~~~~iD~V~Iatp~~~H~-e~~~~AL~a---GkhVl~EKPla~t~  104 (342)
T COG0673          61 ELLADPDIDAVYIATPNALHA-ELALAALEA---GKHVLCEKPLALTL  104 (342)
T ss_pred             HHhcCCCCCEEEEcCCChhhH-HHHHHHHhc---CCEEEEcCCCCCCH
Confidence            6 44  369999999988864 223333332   33466544344444

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.68  E-value=0.0024  Score=58.41  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.+ ..+|.|||+|..|...|..|+++|++|+++|++++
T Consensus         1 ~~~-~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          1 MTK-VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCC-CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            553 36899999999999999999999999999998764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.67  E-value=0.002  Score=58.69  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++....|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            555545799999999999999999999999999998753

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.66  E-value=0.01  Score=49.66  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|+|.|+|++|+.+|..|.+.|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            699999999999999999999988 566789877

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.64  E-value=0.014  Score=50.85  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=46.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.+|..++..+.+ .++++. ++|+++++.....         ..+.|..            ...++.++ +
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~---------A~~~Gi~------------~~~~~~e~ll   60 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR---------ARELGVK------------TSAEGVDGLL   60 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH---------HHHCCCC------------EEECCHHHHh
Confidence            489999999999988777664 466766 6888887532110         0223321            23345554 3


Q ss_pred             --cCCcEEEEecccCHH
Q 022407           83 --HSADIIVEAIVESED   97 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~   97 (297)
                        .+.|+|+++.|...+
T Consensus        61 ~~~dIDaV~iaTp~~~H   77 (285)
T TIGR03215        61 ANPDIDIVFDATSAKAH   77 (285)
T ss_pred             cCCCCCEEEECCCcHHH
Confidence              368999999998765

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.63  E-value=0.0083  Score=52.22  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||.|. .|+++|..|.+.|..|+++++..
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            6899999997 99999999999999999999743

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.62  E-value=0.0079  Score=52.10  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+|-.+++++..|++.|. +|++++|++++.+.+
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            479999999999999999999997 599999999877665

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.61  E-value=0.0095  Score=50.83  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      .+|+|||+|.+|+.++..|+.+|. +++++|.+.-
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            589999999999999999999997 7889987643

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.61  E-value=0.097  Score=45.76  Aligned_cols=39  Identities=28%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~   44 (297)
                      -++|+|+|+|-+|. ||..++++ |++|+++|++..+-+++
T Consensus       182 G~~vgI~GlGGLGh-~aVq~AKAMG~rV~vis~~~~kkeea  221 (360)
T KOG0023|consen  182 GKWVGIVGLGGLGH-MAVQYAKAMGMRVTVISTSSKKKEEA  221 (360)
T ss_pred             CcEEEEecCcccch-HHHHHHHHhCcEEEEEeCCchhHHHH
Confidence            37899999988884 88888876 99999999997555544

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=96.57  E-value=0.025  Score=44.31  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=26.8

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeC-CHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDT-DPDALV   42 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~-~~~~~~   42 (297)
                      .||+|+|+|.||+.++..+.. .+.++. +.|+ +++.+.
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a   40 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLA   40 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHH
Confidence            379999999999999998775 466655 4563 444433

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.57  E-value=0.0033  Score=42.22  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             EECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407           10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus        10 iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |||+|.-|...|..|+++|++|+++|++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999998753

...

>PRK07045 putative monooxygenase; Reviewed

Probab=96.56  E-value=0.0031  Score=57.59  Aligned_cols=40  Identities=25%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |++...+|.|||+|..|...|..|+++|++|+++++.++.
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            6655568999999999999999999999999999987753

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.55  E-value=0.01  Score=53.29  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--c
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--D   81 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~   81 (297)
                      +||+|||+ |.+|..++..|..+ ++++..+-.+.+.-+.+.+    .      .+.+.     .. ....+ ++.+  .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~------~~~~~-----~~-~~~~~-~~~~~~~   65 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----V------HPHLR-----GL-VDLVL-EPLDPEI   65 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----h------Ccccc-----cc-cCcee-ecCCHHH
Confidence            68999997 99999999999876 6776544323221111100    0      00000     00 00111 1222  3


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..++|+|+.|+|...+  .++..++   ...++.++++++....
T Consensus        66 ~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~  104 (343)
T PRK00436         66 LAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL  104 (343)
T ss_pred             hcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence            5679999999998654  2333333   2356777778876654

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.54  E-value=0.018  Score=48.74  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      ||.|||+|.+|+.++..|+..|+ +++++|.+.=
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V   34 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI   34 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            58999999999999999999998 7889988653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.0077  Score=56.80  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999987654

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.53  E-value=0.0061  Score=52.82  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=51.1

Q ss_pred             cEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||.|.. |.++|..|.+.|..|+++...                                      +.++.+ ++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------------------------------t~~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------------------------------TRDLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------------------------------CCCHHHHhh
Confidence            68999999877 999999999999999987532                                      223333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.+++...-     +..  .+++++++++.
T Consensus       201 ~ADIVV~avG~~~~-----i~~--~~ik~gavVID  228 (285)
T PRK14189        201 QADIVVAAVGKRNV-----LTA--DMVKPGATVID  228 (285)
T ss_pred             hCCEEEEcCCCcCc-----cCH--HHcCCCCEEEE
Confidence            89999999984332     221  56778887763

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.51  E-value=0.01  Score=43.44  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -++|.|||.|.+|..=+..|.+.|.+|+++..+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3689999999999999999999999999999886

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.015  Score=53.13  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             CcEEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ..||+|||+|..+.+--..  +.+    .+.++.++|+++++++..    ....++++++-.        ..-++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g--------~~~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAG--------APVKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhC--------CCeEEEEecC
Confidence            3589999999987664332  222    356899999999987733    333334443321        1244677888


Q ss_pred             ccc-ccCCcEEEEec
Q 022407           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            876 99999999876

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.50  E-value=0.0036  Score=57.63  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |+|+|||+|.+|.+.|..|+++|++|+++|++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            3799999999999999999999999999999753

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.47  E-value=0.0066  Score=56.10  Aligned_cols=36  Identities=33%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ++|.|||.|.+|.++|..|.+.|++|+++|++++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            689999999999999999999999999999887643

>PRK08223 hypothetical protein; Validated

Probab=96.46  E-value=0.012  Score=51.16  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~   41 (297)
                      .+|.|||+|-+|+.++..|+.+|. +++++|.+.=..
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~   64 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL   64 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence            589999999999999999999998 788999865333

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.46  E-value=0.017  Score=54.43  Aligned_cols=34  Identities=29%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|..+|..|++.|++|+++|.++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            6899999999999999999999999999997653

>PLN03075 nicotianamine synthase; Provisional

Probab=96.45  E-value=0.059  Score=47.03  Aligned_cols=101  Identities=22%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCc--
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNL--   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--   79 (297)
                      .++|..||+|..|..-...++..  +-.++.+|.+++.++.+++.+++.      .|         ...++++. .|.  
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g---------L~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD---------LSKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC---------ccCCcEEEECchhh
Confidence            47899999999877554444443  336999999999988886544311      11         11223332 121  


Q ss_pred             --ccccCCcEEEEeccc--CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           80 --KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 --~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                        ....+.|+|+..+--  +..-|+.++..+.+.++++.+++.-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              124678999987521  12447899999999998888776444

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.41  E-value=0.014  Score=50.10  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS   50 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~   50 (297)
                      .+++.|-|+ +-+|..+|..|++.|++|.++.|+.++++++.+++++
T Consensus         6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            467888899 9999999999999999999999999999998776654

>PRK05868 hypothetical protein; Validated

Probab=96.40  E-value=0.0041  Score=56.55  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|...|..|+++|++|+++|+.++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            5799999999999999999999999999998765

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.37  E-value=0.027  Score=47.49  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE-EEeC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDT   36 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~-~~d~   36 (297)
                      ++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            689999999999999999999999988 7777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.21  Score=43.64  Aligned_cols=39  Identities=28%  Similarity=0.421  Sum_probs=35.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++++|+|+|.+|.+.+.-...+|- +++.+|.|+++.+.+
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a  233 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA  233 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH
Confidence            689999999999999998888886 799999999998877

>PRK06847 hypothetical protein; Provisional

Probab=96.36  E-value=0.005  Score=55.83  Aligned_cols=38  Identities=34%  Similarity=0.406  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.+ .++|.|||+|.-|...|..|++.|++|++++++++
T Consensus         1 m~~-~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          1 MAA-VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CCC-cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            543 56899999999999999999999999999998754

>PRK07236 hypothetical protein; Provisional

Probab=96.35  E-value=0.0055  Score=55.89  Aligned_cols=35  Identities=26%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|.-|...|..|+++|++|+++++.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            36899999999999999999999999999998764

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.35  E-value=0.015  Score=52.06  Aligned_cols=143  Identities=22%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-c
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDV---WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-K   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~   80 (297)
                      +||+|+|+ |..|..+...|+++||.+   ..+.++.+.-+..           .-.+           ..+.+.+.. .
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l-----------~~~g-----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL-----------SFKG-----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee-----------eeCC-----------ceeEEeeCCHH
Confidence            58999999 999999999999988864   5554443221111           0000           112332211 2


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc--eeEecC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRG  158 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vev~~~  158 (297)
                      +++++|+||.|+|...  -.++..++   ...+++|+++++....+.   .  .|   .++.-+++..+...  -.++..
T Consensus        60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~p---~~lpevn~~~i~~~~~~~iVan  126 (334)
T PRK14874         60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRMDP---D--VP---LVVPEVNPEALAEHRKKGIIAN  126 (334)
T ss_pred             HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhcCC---C--CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence            3678999999998554  33444433   334567777776543221   0  11   22222222211111  136666


Q ss_pred             CCChHHHHH-HHHHHHHHhCCeEEEe
Q 022407          159 ADTSDETFR-ATKALAERFGKTVVCS  183 (297)
Q Consensus       159 ~~~~~~~~~-~~~~l~~~lG~~~v~~  183 (297)
                      +++...... .+.++.+..+-..+.+
T Consensus       127 p~C~~t~~~l~l~pL~~~~~i~~i~v  152 (334)
T PRK14874        127 PNCSTIQMVVALKPLHDAAGIKRVVV  152 (334)
T ss_pred             ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence            666555444 4566666666654444

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.34  E-value=0.19  Score=44.39  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|+|+|+|-+|.+-.+....+|- .+..+|+++++++.+
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A  226 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA  226 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH
Confidence            589999999999998888888876 688999999998877

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.33  E-value=0.048  Score=48.09  Aligned_cols=144  Identities=19%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE---ecC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC---TSN   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      .||+|+|+ |.+|..|...|....+.   +.++...++.=++   +        .+.+.          ..+..   ..+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~---~--------~~f~~----------~~~~v~~~~~~   60 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK---Y--------IEFGG----------KSIGVPEDAAD   60 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc---c--------ccccC----------ccccCcccccc
Confidence            58999998 99999999999997654   4444433221000   0        00000          00111   133


Q ss_pred             cccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce---eE
Q 022407           79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV---EV  155 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v---ev  155 (297)
                      ..+.+++|+++.|.+.+..  +++..++   .+.++++++|+|....+        +.--+-+.-.||-++....   -|
T Consensus        61 ~~~~~~~Divf~~ag~~~s--~~~~p~~---~~~G~~VIdnsSa~Rm~--------~DVPLVVPeVN~~~l~~~~~rg~I  127 (334)
T COG0136          61 EFVFSDVDIVFFAAGGSVS--KEVEPKA---AEAGCVVIDNSSAFRMD--------PDVPLVVPEVNPEHLIDYQKRGFI  127 (334)
T ss_pred             ccccccCCEEEEeCchHHH--HHHHHHH---HHcCCEEEeCCcccccC--------CCCCEecCCcCHHHHHhhhhCCCE
Confidence            4446789999999986554  3444433   44578999999865321        1111222223332211111   14


Q ss_pred             ecCCC-ChHHHHHHHHHHHHHhCCeEEEe
Q 022407          156 IRGAD-TSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       156 ~~~~~-~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      +.++. +.....-.+.++++..+-+-+++
T Consensus       128 ianpNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         128 IANPNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             EECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence            44433 45566677788888877655544

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.33  E-value=0.014  Score=49.16  Aligned_cols=44  Identities=27%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+.+.++|.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            5444468999987 9999999999999999999999998766544

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.32  E-value=0.01  Score=53.92  Aligned_cols=98  Identities=12%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      .+||+|+|+ |..|..+...|..+ .++|+.+.++.+.-+..    ......+. .+.           ..... .+.++
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~l~-~~~-----------~~~~~~~~~~~  101 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPHLI-TQD-----------LPNLVAVKDAD  101 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcccc-Ccc-----------ccceecCCHHH
Confidence            469999999 99999999999988 78999887654321111    00000000 000           00011 11223


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++|+||.|+|...  -.++...+    ..++.++.+++..-
T Consensus       102 ~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fR  138 (381)
T PLN02968        102 FSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFR  138 (381)
T ss_pred             hcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhc
Confidence            678999999998653  33444443    34566776776543

>PRK06753 hypothetical protein; Provisional

Probab=96.31  E-value=0.005  Score=55.78  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|+++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4799999999999999999999999999998765

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.30  E-value=0.0048  Score=53.38  Aligned_cols=90  Identities=23%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-e---cCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-T---SNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~---~~~~~   81 (297)
                      .+|+|||.|..|.--|.....-|-+|++.|+|.+++..+...                     ...|+.. .   .++++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence            479999999999998888888899999999999988765211                     1122222 2   22344


Q ss_pred             -ccCCcEEEEec--ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 -LHSADIIVEAI--VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 -~~~aD~Vi~~v--~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       +..+|+||-+|  |.... -.-+.+++-+.++++++|+
T Consensus       228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEE
Confidence             88999999876  32211 1234556556677777665

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.30  E-value=0.025  Score=53.78  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|+.++++.+.+
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            56888887 999999999999999999999999987765533

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.032  Score=51.96  Aligned_cols=39  Identities=28%  Similarity=0.202  Sum_probs=33.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.-.-++|.|+|+|.+|.++|..|++.|++|.+.|++..
T Consensus         1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            443447899999999999999999999999999998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.29  E-value=0.0045  Score=55.16  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=29.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999999765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.28  E-value=0.006  Score=46.95  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      +||.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            689999999999999999999998 799999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=96.27  E-value=0.0049  Score=56.23  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+.....|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus         1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            65556689999999999999999999999999999864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.27  E-value=0.0051  Score=56.20  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ...|.|||+|..|...|..|++.|++|+++|+.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            3579999999999999999999999999999865

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.017  Score=54.24  Aligned_cols=35  Identities=34%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            68999999999999999999999999999987543

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.25  E-value=0.012  Score=51.82  Aligned_cols=38  Identities=32%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ..++|+|-|+ |.+|+.|...|+++||.|...=|+++..
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~   43 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDE   43 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchh
Confidence            4579999999 9999999999999999999999988863

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.22  E-value=0.016  Score=50.15  Aligned_cols=68  Identities=21%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||.| .+|.++|..|.+.|..|+++......+.                                     +.++.
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            789999998 8999999999999999999864332211                                     12567


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ||+||.++....-+..       .+++++++++
T Consensus       201 ADIvV~AvG~p~~i~~-------~~vk~GavVI  226 (285)
T PRK14191        201 ADIVCVGVGKPDLIKA-------SMVKKGAVVV  226 (285)
T ss_pred             CCEEEEecCCCCcCCH-------HHcCCCcEEE
Confidence            9999999965443332       3456777765

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.20  E-value=0.0092  Score=53.16  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+ |.||+.++..|+.. | .++++++|+.+++..+
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L  197 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL  197 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence            68999999 89999999999854 5 5899999998877654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.19  E-value=0.012  Score=50.96  Aligned_cols=68  Identities=22%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||-+. +|.++|..|.+.|..|++++....                                      ++.+ ++
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~  201 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------------------------NLRHHVR  201 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------------------------CHHHHHh
Confidence            7899999988 899999999999999999975422                                      2333 57


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-+..       .+++++++++.
T Consensus       202 ~ADIvi~avG~p~~v~~-------~~vk~gavVID  229 (285)
T PRK10792        202 NADLLVVAVGKPGFIPG-------EWIKPGAIVID  229 (285)
T ss_pred             hCCEEEEcCCCcccccH-------HHcCCCcEEEE
Confidence            89999999953332222       56678887763

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.18  E-value=0.015  Score=46.07  Aligned_cols=71  Identities=25%  Similarity=0.289  Sum_probs=45.7

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||-+ .+|.+++..|.+.|..|++.+.....+++                                     .++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~-------------------------------------~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE-------------------------------------ITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH-------------------------------------HHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc-------------------------------------eeee
Confidence            789999996 58999999999999999999765322221                                     2568


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ||+||.++.....++.       ++++++++++...
T Consensus        80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG  108 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVG  108 (160)
T ss_dssp             SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--
T ss_pred             ccEEeeeecccccccc-------ccccCCcEEEecC
Confidence            9999999975443332       3567888777443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.057  Score=50.54  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            6899999999999999999999999999998753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.16  E-value=0.019  Score=48.62  Aligned_cols=44  Identities=32%  Similarity=0.385  Sum_probs=37.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-++|.|+|+ |.+|..++..|++.|++|++.+|++++.+..
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~   45 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4334468999987 9999999999999999999999998776554

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.14  E-value=0.0021  Score=61.28  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~  372 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK  372 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence            589999999999999999999998 788998643

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.13  E-value=0.008  Score=53.60  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|+|||+|..|..+|..|++.|++|+++|++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.10  E-value=0.013  Score=47.04  Aligned_cols=76  Identities=16%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             CcEEEEECCChhHHHHHHH-HH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecCc
Q 022407            5 MKVMGVVGSGQMGSGIAQL-GV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSNL   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~   79 (297)
                      +-+|.|||+|++|.+++.. +. ++|.+++ ++|.+++.+-.-                 .        +.+.+  -+++
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-----------------~--------~~v~V~~~d~l  138 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-----------------I--------GDVPVYDLDDL  138 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-----------------c--------CCeeeechHHH
Confidence            4589999999999999986 55 6788755 899999854211                 0        11222  2334


Q ss_pred             cc-cc--CCcEEEEecccCHHHHHHHHHHHH
Q 022407           80 KD-LH--SADIIVEAIVESEDVKKKLFSELD  107 (297)
Q Consensus        80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~  107 (297)
                      +. ++  +.|+.|.|||.+.  -|++...|-
T Consensus       139 e~~v~~~dv~iaiLtVPa~~--AQ~vad~Lv  167 (211)
T COG2344         139 EKFVKKNDVEIAILTVPAEH--AQEVADRLV  167 (211)
T ss_pred             HHHHHhcCccEEEEEccHHH--HHHHHHHHH
Confidence            44 44  7899999998544  445544443

>PRK06126 hypothetical protein; Provisional

Probab=96.09  E-value=0.0071  Score=57.88  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            345799999999999999999999999999998754

>PRK06185 hypothetical protein; Provisional

Probab=96.09  E-value=0.0076  Score=55.31  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            35799999999999999999999999999998753

>PRK07588 hypothetical protein; Provisional

Probab=96.07  E-value=0.0073  Score=55.15  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|...|..|++.|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            4799999999999999999999999999998754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.06  E-value=0.18  Score=36.88  Aligned_cols=95  Identities=18%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCc---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNL---   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---   79 (297)
                      .+|.-||+|. | .++..+++  .|.+|+.+|.+++.++.+++...       +.+         ...++++ ..|.   
T Consensus         3 ~~vLDlGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~   64 (112)
T PF12847_consen    3 GRVLDLGCGT-G-RLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD   64 (112)
T ss_dssp             CEEEEETTTT-S-HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred             CEEEEEcCcC-C-HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence            5799999987 3 34444555  89999999999999888865541       111         1133333 2333   


Q ss_pred             -ccccCCcEEEEec-----ccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           80 -KDLHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        80 -~~~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                       ......|+|+...     .-..+..+.+++.+.+.++++..++.
T Consensus        65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence             1245789999866     11224467788888888888776653

...

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.13  Score=45.89  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+
T Consensus         8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~   49 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE   49 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57888888 899999999999999999999999988766543

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.04  E-value=0.0071  Score=55.48  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|+++|++|+++++.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998764

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.03  E-value=0.013  Score=52.50  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD   27 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~   27 (297)
                      .+|+|+|+|.||+.++..+.+.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4899999999999999988765

>PRK07538 hypothetical protein; Provisional

Probab=96.03  E-value=0.0078  Score=55.47  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|+++|++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            4799999999999999999999999999998764

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.02  E-value=0.13  Score=42.88  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=59.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh----h-hcccCCceEE-ecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA----M-GTDAPRRLRC-TSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~-~~~~~~~i~~-~~~~   79 (297)
                      .+|-++|||.  ..-|..|+..|++|+.+|.++..++.+.+          +.+.....    . ......++++ ..|.
T Consensus        36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~D~  103 (213)
T TIGR03840        36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFA----------ENGLTPTVTQQGEFTRYRAGNIEIFCGDF  103 (213)
T ss_pred             CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHH----------HcCCCcceeccccceeeecCceEEEEccC
Confidence            5899999997  46788899999999999999998886521          11110000    0 0000112332 2232


Q ss_pred             cc-----ccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCeE
Q 022407           80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASAI  115 (297)
Q Consensus        80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~i  115 (297)
                      .+     ...-|.|+++.   .-+.+.....++.+.++++++..
T Consensus       104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840       104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence            22     12358888643   12345567788899999988763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.02  E-value=0.018  Score=53.27  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--------CC--c-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--------GL--D-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--------G~--~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .+|+|+|+|.+|..++..|.++        |.  + +.++|++.++....            .            .....
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~------------~------------~~~~~   59 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV------------D------------LPGIL   59 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC------------C------------Ccccc
Confidence            5899999999999998877543        33  4 34678886542211            0            01123


Q ss_pred             EecCccc-c--cCCcEEEEecccC
Q 022407           75 CTSNLKD-L--HSADIIVEAIVES   95 (297)
Q Consensus        75 ~~~~~~~-~--~~aD~Vi~~v~e~   95 (297)
                      +++++++ +  .+.|+|+++++..
T Consensus        60 ~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349         60 LTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             eeCCHHHHhhCCCCCEEEECCCCc
Confidence            5667766 4  3579999998653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.00  E-value=0.0099  Score=54.02  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..+|+|||+|.+|.+.|..|++.|++|+++|...
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence            3689999999999999999999999999999765

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.00  E-value=0.008  Score=54.46  Aligned_cols=32  Identities=31%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            59999999999999999999999999999864

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.027  Score=47.31  Aligned_cols=39  Identities=28%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+ |.+|..++..|++.|++|.+.+|++++.+..
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~   46 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA   46 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence            67999987 9999999999999999999999998766554

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.93  E-value=0.022  Score=53.28  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||.|..|.+.|..|.+.|++|.++|..+.
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   43 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPA   43 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChh
Confidence            6899999999999999999999999999997654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.93  E-value=0.02  Score=49.62  Aligned_cols=68  Identities=24%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||-+. +|.++|..|.+.|..|++++...                                      .++.+ ++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------------------------------~~l~~~~~  206 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------------------------------DDLKKYTL  206 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------------------------------CCHHHHHh
Confidence            7899999988 89999999999999999997432                                      23333 57


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++.       .+++++++++.
T Consensus       207 ~ADIvv~AvG~p~~i~~-------~~vk~gavVID  234 (287)
T PRK14176        207 DADILVVATGVKHLIKA-------DMVKEGAVIFD  234 (287)
T ss_pred             hCCEEEEccCCccccCH-------HHcCCCcEEEE
Confidence            89999997753332222       35677887764

>PRK08013 oxidoreductase; Provisional

Probab=95.93  E-value=0.0085  Score=54.98  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4699999999999999999999999999998765

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.91  E-value=0.036  Score=42.89  Aligned_cols=68  Identities=29%  Similarity=0.374  Sum_probs=48.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|.|+|- ...|.++|..|.+.|..|++.+.+..                                      ++++ ++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------------------------------~l~~~v~   70 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------------------------------QLQSKVH   70 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------------------------------CHHHHHh
Confidence            67888887 55688888888888888888875432                                      2222 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.....++.       ++++++++++.
T Consensus        71 ~ADIVvsAtg~~~~i~~-------~~ikpGa~Vid   98 (140)
T cd05212          71 DADVVVVGSPKPEKVPT-------EWIKPGATVIN   98 (140)
T ss_pred             hCCEEEEecCCCCccCH-------HHcCCCCEEEE
Confidence            89999999976543333       34678887763

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.91  E-value=0.01  Score=54.26  Aligned_cols=32  Identities=31%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|..+|..|+++|++|+++|+.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            47999999999999999999999999999998

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.90  E-value=0.046  Score=49.14  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=56.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      +||+|+|+ |.+|..++..|.++ ++++. +++.+...-+..    ...      .+.+.     .. ..+.+. .+.++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~------~~~l~-----~~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEV------HPHLR-----GL-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHh------Ccccc-----cc-CCceeecCCHHH
Confidence            48999999 99999999999976 67877 556554211111    000      00000     00 001122 13333


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                       .+++|+||.|+|....  .++..++.   ..++.++++++..-
T Consensus        65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR  103 (346)
T TIGR01850        65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFR  103 (346)
T ss_pred             hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhh
Confidence             3589999999997653  33433332   34677777777554

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.89  E-value=0.16  Score=45.45  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=79.5

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHH-CCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVM-DGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~-~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      |.....||+|||+ |..|.-+...|.. ..++   +.++.....                  .|..-.  ..  ...+.+
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s------------------aGk~~~--~~--~~~l~v   58 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS------------------AGKTVQ--FK--GREIII   58 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc------------------CCCCee--eC--CcceEE
Confidence            6555579999999 9999999999995 6777   555543321                  011000  00  011223


Q ss_pred             e-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee
Q 022407           76 T-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        76 ~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve  154 (297)
                      . .+.++++++|+||.|+|...  -.++..++   ...++.++++++..-.       .+.. -+++.-+|+..+...-.
T Consensus        59 ~~~~~~~~~~~Divf~a~~~~~--s~~~~~~~---~~~G~~VID~Ss~fR~-------~~~v-plvvPEvN~e~i~~~~~  125 (347)
T PRK06728         59 QEAKINSFEGVDIAFFSAGGEV--SRQFVNQA---VSSGAIVIDNTSEYRM-------AHDV-PLVVPEVNAHTLKEHKG  125 (347)
T ss_pred             EeCCHHHhcCCCEEEECCChHH--HHHHHHHH---HHCCCEEEECchhhcC-------CCCC-CeEeCCcCHHHHhccCC
Confidence            2 23344688999999998654  23343333   3457788888875432       1111 13333344332221112


Q ss_pred             EecCCCChHH-HHHHHHHHHHHhCCeEEE
Q 022407          155 VIRGADTSDE-TFRATKALAERFGKTVVC  182 (297)
Q Consensus       155 v~~~~~~~~~-~~~~~~~l~~~lG~~~v~  182 (297)
                      ++.++.+... ..-.+.++.+..+-+-++
T Consensus       126 iIanPnC~tt~~~laL~PL~~~~~i~~v~  154 (347)
T PRK06728        126 IIAVPNCSALQMVTALQPIRKVFGLERII  154 (347)
T ss_pred             EEECCCCHHHHHHHHHHHHHHcCCccEEE
Confidence            5656555443 344566777665544343

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.033  Score=47.13  Aligned_cols=40  Identities=20%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA   48 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            68889987 99999999999999999999999987766543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.88  E-value=0.011  Score=54.16  Aligned_cols=33  Identities=33%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|+..|..|++.|++|++++..+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            579999999999999999999999999999644

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.88  E-value=0.1  Score=48.81  Aligned_cols=129  Identities=16%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec---Ccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS---NLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~   82 (297)
                      ++|.|||.|.++..=+..|.++|.+|+++...-.  +.+        ..+.+.|.+            ++..   ...++
T Consensus        13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~--~~~--------~~l~~~~~i------------~~~~~~~~~~dl   70 (457)
T PRK10637         13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFI--PQF--------TAWADAGML------------TLVEGPFDESLL   70 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC--HHH--------HHHHhCCCE------------EEEeCCCChHHh
Confidence            7899999999999999999999999999965421  111        112333332            2221   22348


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCC--CCCcceeEecCCC
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP--PLMKLVEVIRGAD  160 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~--~~~~~vev~~~~~  160 (297)
                      +++++||.|+. |.++.+.+    .+.++...+++ |...-+           .   ..+|+.|.  ...++.--+.+.+
T Consensus        71 ~~~~lv~~at~-d~~~n~~i----~~~a~~~~~lv-N~~d~~-----------~---~~~f~~pa~~~~g~l~iaisT~G  130 (457)
T PRK10637         71 DTCWLAIAATD-DDAVNQRV----SEAAEARRIFC-NVVDAP-----------K---AASFIMPSIIDRSPLMVAVSSGG  130 (457)
T ss_pred             CCCEEEEECCC-CHHHhHHH----HHHHHHcCcEE-EECCCc-----------c---cCeEEEeeEEecCCEEEEEECCC
Confidence            89999998865 44444444    44444444444 322211           1   12333443  2233444455566


Q ss_pred             ChHHHHHHHHHHHHHh
Q 022407          161 TSDETFRATKALAERF  176 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~l  176 (297)
                      .+|.....++.-++.+
T Consensus       131 ~sP~~a~~lr~~ie~~  146 (457)
T PRK10637        131 TSPVLARLLREKLESL  146 (457)
T ss_pred             CCcHHHHHHHHHHHHh
Confidence            7777777666655553

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.85  E-value=0.012  Score=53.79  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999999999998874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.85  E-value=0.043  Score=50.75  Aligned_cols=30  Identities=27%  Similarity=0.184  Sum_probs=28.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE-e
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV-D   35 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~-d   35 (297)
                      ++|+|.|.|++|...|..|...|.+|+.+ |
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            68999999999999999999999999877 8

>PRK07411 hypothetical protein; Validated

Probab=95.83  E-value=0.023  Score=51.92  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      .+|.|||+|-+|+.+|..|+.+|. +++++|.+.=
T Consensus        39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~v   73 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVV   73 (390)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEe
Confidence            589999999999999999999998 7889987643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=95.82  E-value=0.011  Score=53.57  Aligned_cols=31  Identities=29%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|.|||+|.+|.+.|..|++.|++|+++|+.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999984

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.82  E-value=0.032  Score=52.26  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.+ +|..|.+.|++|+++|.+..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            468999999999999 79999999999999998754

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.81  E-value=0.037  Score=46.69  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             CCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         3 ~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ..++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL   46 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            34567888886 9999999999999999999999998765544

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.81  E-value=0.038  Score=47.67  Aligned_cols=129  Identities=20%  Similarity=0.277  Sum_probs=71.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----CC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD----GL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~----G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .||.|+|+|.-|.++|..|...    |.       +++++|+.---.+ -+..+......+.+...           . .
T Consensus        26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~-~r~~l~~~~~~~a~~~~-----------~-~   92 (279)
T cd05312          26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTK-DRKDLTPFKKPFARKDE-----------E-K   92 (279)
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeC-CCCcchHHHHHHHhhcC-----------c-c
Confidence            6899999999999999998876    87       7899998521000 00001111111111110           0 0


Q ss_pred             EecCccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecCCCC
Q 022407           75 CTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        75 ~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      -..++.+ ++  ++|++|=+-...-...+++++.+.++++.-.|+. ||...   ..+++..+......-+....+|.|.
T Consensus        93 ~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv  172 (279)
T cd05312          93 EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPV  172 (279)
T ss_pred             cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCe
Confidence            1235555 67  7898886442222447788888888887666665 44332   2334444433222233344566665

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.78  E-value=0.013  Score=53.50  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|...|..|++.|++|+++|..+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            479999999999999999999999999999764

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.78  E-value=0.029  Score=50.14  Aligned_cols=141  Identities=15%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT   76 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      |.++ .||+|+|+ |..|.-+...|.+++|.+.   .+. +.+...+-           +...        .  ..+.+.
T Consensus         1 m~~~-~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~-----------l~~~--------~--~~l~~~   57 (336)
T PRK05671          1 MSQP-LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHS-----------VPFA--------G--KNLRVR   57 (336)
T ss_pred             CCCC-CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCe-----------eccC--------C--cceEEe
Confidence            5443 69999998 9999999999998887533   332 22211100           0000        0  112232


Q ss_pred             c-CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc--ce
Q 022407           77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--LV  153 (297)
Q Consensus        77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~v  153 (297)
                      . +..+++++|+||.|+|...  -..+..++.   ..++.++.+++..-.+      ..|   .++.-+++..+..  --
T Consensus        58 ~~~~~~~~~vD~vFla~p~~~--s~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~  123 (336)
T PRK05671         58 EVDSFDFSQVQLAFFAAGAAV--SRSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAP  123 (336)
T ss_pred             eCChHHhcCCCEEEEcCCHHH--HHHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCC
Confidence            2 1223678999999998543  233444332   3467777777755322      111   2232233321111  02


Q ss_pred             eEecCCCChHHH-HHHHHHHHHHhCC
Q 022407          154 EVIRGADTSDET-FRATKALAERFGK  178 (297)
Q Consensus       154 ev~~~~~~~~~~-~~~~~~l~~~lG~  178 (297)
                      .++..+++.+.. .-.+.++.+.++.
T Consensus       124 ~iIAnPgC~~t~~~laL~PL~~~~~~  149 (336)
T PRK05671        124 FLVSSPSASAVALAVALAPLKGLLDI  149 (336)
T ss_pred             CEEECCCcHHHHHHHHHHHHHHhcCC
Confidence            366666665543 3445677755654

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.77  E-value=0.036  Score=47.91  Aligned_cols=69  Identities=25%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||-+ ..|.++|..|...|..|++...+...+..                                     .++.
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence            689999998 88999999999999999999866433222                                     2457


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      ||+||.+++-..-++.+       +++++++++.
T Consensus       196 ADIvI~Avgk~~lv~~~-------~vk~GavVID  222 (279)
T PRK14178        196 ADILVSAAGKAGFITPD-------MVKPGATVID  222 (279)
T ss_pred             CCEEEECCCcccccCHH-------HcCCCcEEEE
Confidence            99999999744323332       3477887764

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.012  Score=54.48  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||+|+|+|.-|.+-|..|+++||+|++|+...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            589999999999999999999999999998764

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.75  E-value=0.16  Score=44.32  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|+|+|-+|..+|.+|+.+|. +++++|.+.
T Consensus        20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            589999999999999999999998 699999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.74  E-value=0.011  Score=57.90  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            379999999999999999999999999999863

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.74  E-value=0.011  Score=54.28  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            4799999999999999999999999999998764

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.73  E-value=0.069  Score=47.48  Aligned_cols=85  Identities=22%  Similarity=0.344  Sum_probs=48.1

Q ss_pred             EEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            8 MGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |+|+|+|.+|+..+..+.+ .+.+|. +.|.+++....+.....  .+.+   .........-....+....++++ ..+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lg--yds~---~~~~~~~~~~~~~~l~v~g~~eeLl~~   75 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELG--IPVY---AASEEFIPRFEEAGIEVAGTLEDLLEK   75 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhC--CCEE---eecCCcceEeccCceEecCCHHHHhhc
Confidence            6899999999999998765 355655 56777664433311100  0000   00000000001122445556666 678


Q ss_pred             CcEEEEecccCHH
Q 022407           85 ADIIVEAIVESED   97 (297)
Q Consensus        85 aD~Vi~~v~e~~~   97 (297)
                      +|+|++|.|....
T Consensus        76 vDiVve~Tp~~~~   88 (333)
T TIGR01546        76 VDIVVDATPGGIG   88 (333)
T ss_pred             CCEEEECCCCCCC
Confidence            9999999987664

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=95.72  E-value=0.017  Score=53.88  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=32.7

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+...|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            3445799999999999999999999999999998753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.72  E-value=0.012  Score=54.52  Aligned_cols=36  Identities=25%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..++|+|||||.-|...|..|.+.|++|++++++..
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            357899999999999999999999999999998654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.71  E-value=0.065  Score=45.10  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=29.7

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |+|+|+ |.+|++++..|.+.|++|++.-|++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~   33 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS   33 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            789997 99999999999999999999999874

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.71  E-value=0.049  Score=43.17  Aligned_cols=78  Identities=14%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||++||-  +++..+++..+++-|.+|+++.+..-....-.+.+....+...+.|           ..++++++.++ +
T Consensus         3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-----------~~i~~~~~~~e~l   71 (158)
T PF00185_consen    3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-----------GKITITDDIEEAL   71 (158)
T ss_dssp             EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-----------TEEEEESSHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-----------CCeEEEeCHHHhc
Confidence            58999994  7999999999999999999987765221111111111112222222           34678888866 9


Q ss_pred             cCCcEEEEeccc
Q 022407           83 HSADIIVEAIVE   94 (297)
Q Consensus        83 ~~aD~Vi~~v~e   94 (297)
                      +++|+|+...--
T Consensus        72 ~~aDvvy~~~~~   83 (158)
T PF00185_consen   72 KGADVVYTDRWQ   83 (158)
T ss_dssp             TT-SEEEEESSS
T ss_pred             CCCCEEEEcCcc
Confidence            999999986543

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.71  E-value=0.48  Score=42.84  Aligned_cols=172  Identities=13%  Similarity=0.187  Sum_probs=97.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC----ChhhhcccCCceEE---ec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQL----SQAMGTDAPRRLRC---TS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~i~~---~~   77 (297)
                      .+|-|+|+|..+-.+|..|-+.+. .|-++.|...+.++..+.+.+.      .+.+    ..++.....+.+.+   ..
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~------~~~~~v~vqn~~h~~l~G~~~id~~~~   75 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS------DGLFEVSVQNEQHQALSGECTIDHVFQ   75 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC------CCEEEEeecchhhhhhcCeEEhhHhhc
Confidence            579999999999999999988765 6999999776666554443321      1111    01111112222222   34


Q ss_pred             Cccc-ccCCcEEEEecccCHHHHHHHHHHHHhhcc--CCe-EEeecC--CCccHHHHhhhcCCCCeEEEee-c------C
Q 022407           78 NLKD-LHSADIIVEAIVESEDVKKKLFSELDKITK--ASA-ILASNT--SSISITRLASATSRPCQVIGMH-F------M  144 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~--~~~-ii~s~t--s~~~~~~l~~~~~~~~~~~g~h-~------~  144 (297)
                      ++++ ..+=|.+|.|+|.|.  -..++++|....-  -.+ |++|.|  |..-++.+.........++... |      .
T Consensus        76 ~~~~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~  153 (429)
T PF10100_consen   76 DYEEIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS  153 (429)
T ss_pred             CHHHhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec
Confidence            4555 456799999999776  4467766543221  133 445444  3333455555444344455432 2      2


Q ss_pred             CC--C-CCC-cc--eeE-ecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          145 NP--P-PLM-KL--VEV-IRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       145 ~p--~-~~~-~~--vev-~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      +.  | ++. ..  -.| +.+..++...++++..+++.+|-....+..
T Consensus       154 d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~  201 (429)
T PF10100_consen  154 DGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN  201 (429)
T ss_pred             cCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC
Confidence            21  2 111 00  112 222345566788899999999998887753

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.71  E-value=0.17  Score=42.39  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=59.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-----hhhcccCCceEE-ecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-----AMGTDAPRRLRC-TSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~i~~-~~~~   79 (297)
                      .+|-++|||.  ..-|..|+..|++|+.+|.++..++.+.+          +.+....     +.......++++ ..|.
T Consensus        39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~----------~~~l~~~~~~~~~~~~~~~~~v~~~~~D~  106 (218)
T PRK13255         39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFA----------ENGLTPQTRQSGEFEHYQAGEITIYCGDF  106 (218)
T ss_pred             CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHH----------HcCCCccccccccccccccCceEEEECcc
Confidence            5899999997  36777899999999999999998887521          1111000     000000122332 1222


Q ss_pred             cc-----ccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCe
Q 022407           80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASA  114 (297)
Q Consensus        80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~  114 (297)
                      -+     ....|.|++..   .-+.+.+...++.+.++++++.
T Consensus       107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG  149 (218)
T PRK13255        107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC  149 (218)
T ss_pred             cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence            11     23457888533   1235557788899999998885

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.69  E-value=0.043  Score=46.83  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+.+++++..+...+.
T Consensus         8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~   50 (262)
T PRK13394          8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE   50 (262)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence            67889988 9999999999999999999999998776665443

>PRK07190 hypothetical protein; Provisional

Probab=95.67  E-value=0.016  Score=54.66  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.+....|.|||+|..|...|..|+++|++|.++|+.++
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            655556899999999999999999999999999998765

>PRK07877 hypothetical protein; Provisional

Probab=95.67  E-value=0.0092  Score=58.40  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=29.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~   39 (297)
                      .+|+|+|+| +|+.+|..|+.+|.  +++++|.+.=
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~v  142 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTL  142 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEE
Confidence            589999999 89999999999995  8999987643

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.67  E-value=0.014  Score=53.86  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      ++|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            479999999999999999999985 9999999765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.66  E-value=0.035  Score=47.52  Aligned_cols=42  Identities=21%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      |+|.|.|+ |.+|..+|..|++.|++|.+.+++++.++...+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   43 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE   43 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            37889987 8899999999999999999999998877665433

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.66  E-value=0.021  Score=50.50  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++++++++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD   36 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence            37899986 999999999999999999999998664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=95.66  E-value=0.021  Score=49.04  Aligned_cols=67  Identities=25%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.+. +|.+|+..|.++++.|++.....                                      .++.+ ++
T Consensus       157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------------------------------~~l~~~~k  198 (283)
T COG0190         157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------------------------------KDLASITK  198 (283)
T ss_pred             CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------------------------------CCHHHHhh
Confidence            6899999965 59999999999999999997432                                      23333 57


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .||+||.++--..-++       .++++++++++
T Consensus       199 ~ADIvv~AvG~p~~i~-------~d~vk~gavVI  225 (283)
T COG0190         199 NADIVVVAVGKPHFIK-------ADMVKPGAVVI  225 (283)
T ss_pred             hCCEEEEecCCccccc-------cccccCCCEEE
Confidence            8999999986433333       34566777665

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.65  E-value=0.014  Score=53.15  Aligned_cols=32  Identities=28%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---CCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD---GLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~---G~~V~~~d~~   37 (297)
                      .+|.|||+|..|...|..|++.   |++|+++|+.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            5799999999999999999998   9999999994

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.64  E-value=0.012  Score=53.36  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=30.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|.-|...|..|++.|++|+++|+++.
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            88999999999999999999999999999865

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.64  E-value=0.016  Score=53.71  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.++.-.|.|||+|.-|+..|..|+++|++|.++|+.+
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            54444579999999999999999999999999999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.63  E-value=0.016  Score=52.39  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|.+|.+.|..|++.|++|+++|+..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            48999999999999999999999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=95.63  E-value=0.014  Score=48.77  Aligned_cols=36  Identities=22%  Similarity=0.519  Sum_probs=28.5

Q ss_pred             cEEEEECCChhHHHHHHHH--HHCCCcEE-EEeCCHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLG--VMDGLDVW-LVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l--~~~G~~V~-~~d~~~~~~   41 (297)
                      .+|+|||+|.+|..++..+  ...|+++. ++|.++++.
T Consensus        85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~  123 (213)
T PRK05472         85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKI  123 (213)
T ss_pred             cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhc
Confidence            5899999999999998863  35688777 678887643

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.62  E-value=0.022  Score=49.19  Aligned_cols=68  Identities=25%  Similarity=0.310  Sum_probs=49.8

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||-+ .+|.++|..|.+.|..|++....                                      +.++.+ ++
T Consensus       158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------------------------------T~~l~~~~~  199 (281)
T PRK14183        158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------------------------------TKDLKAHTK  199 (281)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------------------------------CcCHHHHHh
Confidence            689999997 88999999999999999987532                                      123333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++.       ++++++++++.
T Consensus       200 ~ADIvV~AvGkp~~i~~-------~~vk~gavvID  227 (281)
T PRK14183        200 KADIVIVGVGKPNLITE-------DMVKEGAIVID  227 (281)
T ss_pred             hCCEEEEecCcccccCH-------HHcCCCcEEEE
Confidence            89999999964333332       35677777763

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.61  E-value=0.016  Score=53.05  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~   38 (297)
                      ..|.|||+|.+|..+|..|++.  |++|+++|+..
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3699999999999999999998  99999999864

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.61  E-value=0.015  Score=53.35  Aligned_cols=32  Identities=16%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|...|..|+++|++|+++|+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47999999999999999999999999999985

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.61  E-value=0.015  Score=53.60  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|..|+..|..|++.|++|++++..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999997554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.045  Score=46.90  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+-++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEAL   45 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4333468999986 9999999999999999999999998776554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.60  E-value=0.07  Score=45.38  Aligned_cols=127  Identities=19%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-----------cEEEEeCCHHHHH---HHHHHHHHHHHHHHHcCCCChhhhcccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-----------DVWLVDTDPDALV---RATKSISSSIQKFVSKGQLSQAMGTDAPR   71 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-----------~V~~~d~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   71 (297)
                      .||.|+|+|.-|.++|..|...+.           +++++|+.---.+   ... ..++.+.++....            
T Consensus        26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~-~~~~~~~~~~~~~------------   92 (254)
T cd00762          26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETC-PNEYHLARFANPE------------   92 (254)
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccC-HHHHHHHHHcCcc------------
Confidence            689999999999999999887664           6888887521000   000 0001111111110            


Q ss_pred             ceEEecCccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecC
Q 022407           72 RLRCTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFM  144 (297)
Q Consensus        72 ~i~~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~  144 (297)
                        ....++.+ ++  ++|++|=+-.-.-...+++++.+.++++.-.|+. ||..+   ..+++..+......-+....+|
T Consensus        93 --~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf  170 (254)
T cd00762          93 --RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPF  170 (254)
T ss_pred             --cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCC
Confidence              11245555 67  8898885332122346788888888877666665 33332   2344444443222334444555


Q ss_pred             CCC
Q 022407          145 NPP  147 (297)
Q Consensus       145 ~p~  147 (297)
                      .|.
T Consensus       171 ~pv  173 (254)
T cd00762         171 HPV  173 (254)
T ss_pred             CCc
Confidence            554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.59  E-value=0.029  Score=45.69  Aligned_cols=85  Identities=20%  Similarity=0.312  Sum_probs=55.5

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC----
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN----   78 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----   78 (297)
                      ++|+|||-+ .+|.++|..|.+.|..|+++|.+.-..-.             ..+.+         .+ +.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~---------~h-s~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI---------RH-EKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc---------cc-ccccccchhhH
Confidence            789999994 56999999999999999999876432200             00000         00 111  12    


Q ss_pred             ccc-ccCCcEEEEecccCHH-HHHHHHHHHHhhccCCeEEeecC
Q 022407           79 LKD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +.+ ++.||+||.+++...- ++.       ++++++++++...
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVG  156 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFA  156 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcC
Confidence            334 7899999999986553 443       3457888776433

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=95.58  E-value=0.012  Score=53.36  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCCHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~   39 (297)
                      |.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            789999999999999999999 99999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.58  E-value=0.062  Score=47.97  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=27.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~-~d~~   37 (297)
                      |.....||+|+|+|.||+..+..+... +.++.. .|.+
T Consensus         1 ~~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~   39 (338)
T PLN02358          1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF   39 (338)
T ss_pred             CCCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence            544556999999999999999987754 566654 5544

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.58  E-value=0.012  Score=54.01  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=30.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            59999999999999999999999999999875

>PRK09126 hypothetical protein; Provisional

Probab=95.57  E-value=0.015  Score=52.97  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            4699999999999999999999999999998754

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.043  Score=46.38  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   41 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL   41 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence            57889986 9999999999999999999999998776554

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.56  E-value=0.016  Score=52.68  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|..+|..|++.|++|+++|+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            46999999999999999999999999999975

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.56  E-value=0.014  Score=55.62  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=28.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +||+|||+|.-|...+..|.+.|++|++++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            6899999999999999999999999999998654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.54  E-value=0.056  Score=45.52  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|+..|++|.+.+|+++..+..
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~   47 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV   47 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888886 8999999999999999999999998765544

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.18  Score=42.69  Aligned_cols=44  Identities=30%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV   45 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence            4333468999988 9999999999999999999999998765443

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.054  Score=46.10  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |.+|..+|..|++.|++|.+.++++++++.+.+
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~   48 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA   48 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57888887 889999999999999999999999887666533

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.52  E-value=0.052  Score=45.52  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-cC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-HS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~   84 (297)
                      .+|.=||||  |..++..+|+.|.+|+..|.+++.++.++....       +.|..-.       -+.....++... ..
T Consensus        61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~-------e~gv~i~-------y~~~~~edl~~~~~~  124 (243)
T COG2227          61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHAL-------ESGVNID-------YRQATVEDLASAGGQ  124 (243)
T ss_pred             CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh-------hcccccc-------chhhhHHHHHhcCCC
Confidence            578889998  668999999999999999999999887743321       1121000       000011122221 35


Q ss_pred             CcEEEEe-----cccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           85 ADIIVEA-----IVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        85 aD~Vi~~-----v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      -|+|+-+     ||+.    +.++....+.++|+.++..+|-.-
T Consensus       125 FDvV~cmEVlEHv~dp----~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         125 FDVVTCMEVLEHVPDP----ESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             ccEEEEhhHHHccCCH----HHHHHHHHHHcCCCcEEEEecccc
Confidence            6777632     3432    346778888999988777555443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.51  E-value=0.28  Score=41.23  Aligned_cols=105  Identities=10%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcc----
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLK----   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~----   80 (297)
                      .+|-|.|||.  +.=+.+|+..||+|+.+|.++..++.+.+...-... ..+.+....    ..-..+++ ..|.-    
T Consensus        45 ~rvLvPgCGk--g~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~-~~~~~~~~~----~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         45 SVCLIPMCGC--SIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYE-VIHGNDYKL----YKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             CeEEEeCCCC--hHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcc-eecccccce----eccCceEEEEccCcCCCc
Confidence            5899999997  455778999999999999999998876331100000 000000000    00011221 12221    


Q ss_pred             ---cccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           81 ---DLHSADIIVEAI---VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ---~~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                         .....|+|.+..   .=+.+......+.+.++++++..++
T Consensus       118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ll  160 (226)
T PRK13256        118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQIL  160 (226)
T ss_pred             cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence               134578888743   1134567888888999888866443

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.50  E-value=0.12  Score=46.40  Aligned_cols=95  Identities=16%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             CCCcEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-
Q 022407            3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-   77 (297)
Q Consensus         3 ~~~~~V~iiG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-   77 (297)
                      +...||+|+|+ |..|..+...|.+.+|.   +..+..... ..+.   +       ...+           ..+.+.. 
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~---~-------~~~~-----------~~~~v~~~   62 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKK---V-------TFEG-----------RDYTVEEL   62 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCe---e-------eecC-----------ceeEEEeC
Confidence            44579999999 99999999999998884   333322211 0000   0       0001           1122322 


Q ss_pred             CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           78 NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +.+++.++|+||.|+|....  .++..++   ...++.++.+++..-
T Consensus        63 ~~~~~~~~D~vf~a~p~~~s--~~~~~~~---~~~g~~VIDlS~~fR  104 (344)
T PLN02383         63 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VDKGAVVVDNSSAFR  104 (344)
T ss_pred             CHHHHcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCchhh
Confidence            22346889999999987643  3343333   235777777777543

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.056  Score=46.00  Aligned_cols=42  Identities=29%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      .-++|.|.|+ |.+|..+|..|++.|++|.+.+++++..+...
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   46 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA   46 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3467889987 89999999999999999999999987665543

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.48  E-value=0.046  Score=47.94  Aligned_cols=100  Identities=27%  Similarity=0.331  Sum_probs=64.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++++|+|.|.+|+-.|.++-.-|..|..||. .+....+             ..|             ++.. ++++ +.
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~g-------------vq~v-sl~Eil~  199 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFG-------------VQLV-SLEEILP  199 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hcc-------------ceee-eHHHHHh
Confidence            6899999999999999999999999999986 3332211             222             1233 3444 88


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC--Cc-cHHHHhhhcC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS--SI-SITRLASATS  133 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~-~~~~l~~~~~  133 (297)
                      .||+|=.-+|-.++.+.-+-.+.-..++.+.-|+ |++  ++ +...+-+.+.
T Consensus       200 ~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~  251 (406)
T KOG0068|consen  200 KADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD  251 (406)
T ss_pred             hcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh
Confidence            8999998887666544433344444566666555 333  32 3345555553

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.47  E-value=0.15  Score=43.34  Aligned_cols=39  Identities=31%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+++++++..+..
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~   44 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA   44 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            68999986 9999999999999999999999998876654

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.058  Score=45.83  Aligned_cols=39  Identities=26%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.+++++.++..
T Consensus         8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   47 (253)
T PRK06172          8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEET   47 (253)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            68999987 8999999999999999999999998876654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.46  E-value=0.028  Score=51.93  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .+||+|+|+|.-|.+.|..|.+.|++|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            579999999999999999999999999999987765

>PLN02985 squalene monooxygenase

Probab=95.45  E-value=0.023  Score=53.91  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus        44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            479999999999999999999999999999874

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.43  E-value=0.049  Score=43.59  Aligned_cols=39  Identities=28%  Similarity=0.454  Sum_probs=34.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|..|.+-+..+...|++|+.+|.+++++++.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~   59 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL   59 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence            689999999999999999999999999999998877654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.43  E-value=0.087  Score=44.80  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCC-CcE-EEEeCCHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDV-WLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G-~~V-~~~d~~~~   39 (297)
                      ++||+|.|+ |.||+.+...+.+.. +++ -.+|+.+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~   39 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS   39 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence            468999999 999999999988765 554 36777654

>cd05295 MDH_like Malate dehydrogenase-like

Probab=95.41  E-value=0.13  Score=47.68  Aligned_cols=106  Identities=10%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD---GL----DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~---G~----~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      -+|+|-|+ |.+|.++..+++.-   |.    .+.++|+  +.+.++...-.+++..-.+              +..+.+
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence            47999998 99999999998873   43    4778998  5666655443433332111              111233


Q ss_pred             -ecCcccccCCcEEEEeccc--C------------HHHHHHHHHHHHhhccC-CeEEeecCCCccH
Q 022407           76 -TSNLKDLHSADIIVEAIVE--S------------EDVKKKLFSELDKITKA-SAILASNTSSISI  125 (297)
Q Consensus        76 -~~~~~~~~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~-~~ii~s~ts~~~~  125 (297)
                       +++++++++||+||.+..-  .            ..+.+.+...|.++.++ ..|++..|....+
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~  255 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNL  255 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHH
Confidence             4556679999999987521  1            12233344456666662 4455544444443

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=95.41  E-value=0.55  Score=40.37  Aligned_cols=177  Identities=18%  Similarity=0.243  Sum_probs=93.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      -||+|+|+ |-+|.++...|-.+=.  +..+||+....  ...          .+...+..   ..........+.++. 
T Consensus        29 ~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVa----------aDlSHI~T---~s~V~g~~g~~~L~~a   93 (345)
T KOG1494|consen   29 LKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVA----------ADLSHINT---NSSVVGFTGADGLENA   93 (345)
T ss_pred             ceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--ccc----------ccccccCC---CCceeccCChhHHHHH
Confidence            58999999 9999999977765432  67799986321  000          00011100   000000111233444 


Q ss_pred             ccCCcEEEEe--cccCH------------HHHHHHHHHHHhhccCCeE-EeecC--CCccH-HHHhhhc--CCCCeEEEe
Q 022407           82 LHSADIIVEA--IVESE------------DVKKKLFSELDKITKASAI-LASNT--SSISI-TRLASAT--SRPCQVIGM  141 (297)
Q Consensus        82 ~~~aD~Vi~~--v~e~~------------~~k~~~~~~l~~~~~~~~i-i~s~t--s~~~~-~~l~~~~--~~~~~~~g~  141 (297)
                      ++++|+|+.-  +|-++            .+.+.+-..+.+.|+...+ ++||.  |++|+ .++....  -.|.++.|.
T Consensus        94 l~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV  173 (345)
T KOG1494|consen   94 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV  173 (345)
T ss_pred             hcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence            8999999974  34322            2344444557777766554 34554  45555 2333222  245666665


Q ss_pred             ecCCCCC--------------C---Cc------ceeEecC-------CCChHHHHHHHHHHHHHhCCeEEEeccchhhhH
Q 022407          142 HFMNPPP--------------L---MK------LVEVIRG-------ADTSDETFRATKALAERFGKTVVCSQDYAGFIV  191 (297)
Q Consensus       142 h~~~p~~--------------~---~~------~vev~~~-------~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~  191 (297)
                      .-++-.+              .   .+      .+.|++-       ...+++.++.+..-.+.-|..++-.+...|...
T Consensus       174 TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSAT  253 (345)
T KOG1494|consen  174 TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSAT  253 (345)
T ss_pred             ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchh
Confidence            5432211              0   00      1222221       234566666666666667888888888777666


Q ss_pred             HHHHHH
Q 022407          192 NRILMP  197 (297)
Q Consensus       192 nri~~~  197 (297)
                      -.|-++
T Consensus       254 LSMAyA  259 (345)
T KOG1494|consen  254 LSMAYA  259 (345)
T ss_pred             hhHHHH
Confidence            555544

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.063  Score=45.21  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus         7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~   46 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV   46 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence            67888987 8999999999999999999999998766554

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.41  E-value=0.032  Score=46.72  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~   45 (297)
                      .+|+|+|.|-+|+..+..|++.|. +++++|.+.=.+....
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N   71 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN   71 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccc
Confidence            589999999999999999999998 7889987654444433

>PRK09186 flagellin modification protein A; Provisional

Probab=95.38  E-value=0.16  Score=43.16  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus         5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   45 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELL   45 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence            67888887 89999999999999999999999988766553

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.38  E-value=0.061  Score=45.46  Aligned_cols=39  Identities=31%  Similarity=0.338  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++++...
T Consensus         7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~   46 (251)
T PRK12826          7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT   46 (251)
T ss_pred             CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57999985 9999999999999999999999998765544

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.37  E-value=0.17  Score=47.28  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      -.|.|+|.|..|.++|..|.+.|++|+++|..+.
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            4799999999999999999999999999997653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.37  E-value=0.068  Score=45.23  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus         6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~   46 (253)
T PRK08217          6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV   46 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            57899998 99999999999999999999999987765543

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.067  Score=45.28  Aligned_cols=39  Identities=28%  Similarity=0.402  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            67889988 9999999999999999999999998765544

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.37  E-value=0.023  Score=51.97  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            4799999999999999999999999999998864

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.36  E-value=1.1  Score=38.78  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|.+ |++.|+++++.+.+
T Consensus       122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a  161 (280)
T TIGR03366       122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA  161 (280)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            5899999999999888888788987 88889998877655

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.35  E-value=0.054  Score=48.15  Aligned_cols=43  Identities=33%  Similarity=0.425  Sum_probs=36.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +.+.|.|+ |-+|..+|..|++.|++|.+++|++++++...+.+
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l   97 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI   97 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence            46777787 88999999999999999999999998877665444

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.059  Score=46.44  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |....++|.|.|+ |.+|..++..|++.|++|.+.++++++++..
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~   45 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET   45 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3333468899988 9999999999999999999999998877654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.34  E-value=0.021  Score=53.46  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|+|||+|.-|...|..|.+.|++|++++++.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            3789999999999999999999999999999754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.34  E-value=0.067  Score=45.54  Aligned_cols=40  Identities=30%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus        11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   51 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA   51 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            68999987 99999999999999999999999987765543

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.30  E-value=0.022  Score=55.40  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..+|.|||+|..|..+|..|++.|++|++|++++
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3689999999999999999999999999999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=95.30  E-value=0.023  Score=52.17  Aligned_cols=31  Identities=23%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             EEEEECCChhHHHHHHHHHHC-CC-cEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~-G~-~V~~~d~~   37 (297)
                      .|.|||+|.+|.++|..|++. |. +|+++|++
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            599999999999999999985 95 89999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.30  E-value=0.033  Score=48.42  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +|.|+|+ |.+|+.++..|.+.|++|++..|++++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~   36 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS   36 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            4789988 9999999999999999999999998743

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06184 hypothetical protein; Provisional

Probab=95.30  E-value=0.023  Score=53.86  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4799999999999999999999999999998754

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.29  E-value=0.031  Score=40.24  Aligned_cols=67  Identities=19%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             CcEEEEECCChhHHHHHHH-HHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQL-GVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~-l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ..+|+|+|+|.+|.+++.. +...|+. +.++|.++++.-.                         ....+.+..+.+++
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-------------------------~i~gipV~~~~~~l   57 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-------------------------EIGGIPVYGSMDEL   57 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-------------------------EETTEEEESSHHHH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-------------------------EECCEEeeccHHHh
Confidence            3689999999999999865 4567887 4588999874321                         12234555555542


Q ss_pred             -c--CCcEEEEecccCH
Q 022407           83 -H--SADIIVEAIVESE   96 (297)
Q Consensus        83 -~--~aD~Vi~~v~e~~   96 (297)
                       +  +.|+.|.++|.+.
T Consensus        58 ~~~~~i~iaii~VP~~~   74 (96)
T PF02629_consen   58 EEFIEIDIAIITVPAEA   74 (96)
T ss_dssp             HHHCTTSEEEEES-HHH
T ss_pred             hhhhCCCEEEEEcCHHH
Confidence             2  3899999998544

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.28  E-value=0.062  Score=45.54  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus        13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~   52 (247)
T PRK08945         13 RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV   52 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence            57888876 9999999999999999999999998776554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.27  E-value=0.076  Score=45.20  Aligned_cols=39  Identities=28%  Similarity=0.250  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++++++++.++..
T Consensus        12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~   51 (256)
T PRK06124         12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA   51 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            67888887 8999999999999999999999998766554

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.073  Score=44.77  Aligned_cols=46  Identities=22%  Similarity=0.237  Sum_probs=37.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      |.-.-+++.|.|+ +.+|.++|..|++.|++|.+.+|+++++++..+
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   47 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYE   47 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            4333367888888 558999999999999999999999987776543

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.27  E-value=0.07  Score=44.94  Aligned_cols=44  Identities=32%  Similarity=0.391  Sum_probs=36.4

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~   44 (297)
                      |.-+.++|.|+|+ |.+|..++..|++.|++|++. +++++..+..
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~   46 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL   46 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            4333468999987 999999999999999999998 9998766554

>PRK08017 oxidoreductase; Provisional

Probab=95.27  E-value=0.051  Score=46.21  Aligned_cols=39  Identities=23%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+.++++++++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~   42 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM   42 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence            47999998 9999999999999999999999998766543

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.071  Score=45.54  Aligned_cols=42  Identities=33%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+.+++++.++...+.
T Consensus         8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~   50 (260)
T PRK07063          8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAA   50 (260)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56778887 8999999999999999999999998876665433

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.055  Score=46.23  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+ |.+|..++..|++.|++|.+++++++.++.+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            57889987 9999999999999999999999998876655

>PRK10206 putative oxidoreductase; Provisional

Probab=95.26  E-value=0.051  Score=48.86  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=43.5

Q ss_pred             cEEEEECCChhHHH-HHHHHHH--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVM--DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||||||+|.++.. .+..+..  .+++|. ++|+++++.+.+           .+.+            .+.+.+|+++
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~~~------------~~~~~~~~~e   58 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-----------PIYS------------HIHFTSDLDE   58 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH-----------HhcC------------CCcccCCHHH
Confidence            48999999997653 2333432  356765 789987543211           1111            1235667776


Q ss_pred             -c--cCCcEEEEecccCHH
Q 022407           82 -L--HSADIIVEAIVESED   97 (297)
Q Consensus        82 -~--~~aD~Vi~~v~e~~~   97 (297)
                       +  .+.|+|+.|+|...+
T Consensus        59 ll~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206         59 VLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             HhcCCCCCEEEEeCCchHH
Confidence             4  368999999998776

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.25  E-value=0.058  Score=46.22  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=35.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-.-+++.|.|+ |.+|..+|..|++.|++|.+.+++.+.++.+
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l   45 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL   45 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4323367888887 7899999999999999999999998765543

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=95.24  E-value=0.027  Score=53.94  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|.+|.++|..|++.|++|+++|++
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999974

>PRK07208 hypothetical protein; Provisional

Probab=95.24  E-value=0.025  Score=53.11  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |++ .++|.|||+|.-|...|..|.++|++|++++.++
T Consensus         1 ~~~-~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          1 MTN-KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCC-CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            443 3579999999999999999999999999999754

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.23  E-value=0.065  Score=39.99  Aligned_cols=61  Identities=21%  Similarity=0.318  Sum_probs=34.6

Q ss_pred             CCChhHHHHHHHHHHC----CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc--
Q 022407           12 GSGQMGSGIAQLGVMD----GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH--   83 (297)
Q Consensus        12 G~G~mG~~iA~~l~~~----G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~--   83 (297)
                      |+|.||+.++..+.+.    +++|. ++|++ ..+.....         ..            .......+++++ +.  
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~---------~~------------~~~~~~~~~~~~~~~~~   58 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA---------AS------------FPDEAFTTDLEELIDDP   58 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH---------HH------------HTHSCEESSHHHHHTHT
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh---------hh------------cccccccCCHHHHhcCc
Confidence            8999999999999876    56655 67877 21110000         00            011235667766 55  


Q ss_pred             CCcEEEEeccc
Q 022407           84 SADIIVEAIVE   94 (297)
Q Consensus        84 ~aD~Vi~~v~e   94 (297)
                      +.|+||||.+.
T Consensus        59 ~~dvvVE~t~~   69 (117)
T PF03447_consen   59 DIDVVVECTSS   69 (117)
T ss_dssp             T-SEEEE-SSC
T ss_pred             CCCEEEECCCc
Confidence            79999999543

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.39  Score=41.07  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+.++++++++..
T Consensus        11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   50 (263)
T PRK07814         11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV   50 (263)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            67888887 6899999999999999999999998776554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.23  E-value=0.045  Score=52.11  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+|-+|++++..|++.|.+|++++|+.++.+.+
T Consensus       380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~l  418 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL  418 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            579999999999999999999999999999998877665

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.077  Score=49.63  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ||.|||+|..|.+.|..|++.|++|.++|+++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            699999999999999999999999999998754

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.4  Score=41.24  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+ |.+|..++..|++.|++|.+++++++.++..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~   40 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT   40 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            36888886 9999999999999999999999998766554

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.078  Score=46.46  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.+|+.+.++...+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57888887 999999999999999999999999887766543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.21  E-value=0.066  Score=45.64  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|.+.+++.+..+..
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~   46 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA   46 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            57888887 9999999999999999999999998876654

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.21  E-value=0.3  Score=41.78  Aligned_cols=39  Identities=15%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..+|..|++.|++|.+.+++++.++.+
T Consensus         7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (263)
T PRK06200          7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL   46 (263)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888887 7899999999999999999999998776554

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.21  E-value=0.079  Score=44.49  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=36.4

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-.-++|.|.|+ |.+|..++..|++.|++|++.+++++..+.+
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM   45 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4323468999988 8899999999999999999999998766544

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.20  E-value=0.31  Score=42.10  Aligned_cols=40  Identities=23%  Similarity=0.184  Sum_probs=34.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|.|+ |.+|..++..|++.|++|++.++++++++.+
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l   44 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF   44 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence            357889987 9999999999999999999999998765543

>PRK08643 acetoin reductase; Validated

Probab=95.19  E-value=0.45  Score=40.41  Aligned_cols=39  Identities=36%  Similarity=0.401  Sum_probs=33.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|+|+ |.+|..++..|++.|++|.+.++++++.+..
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~   42 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAA   42 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46778877 8999999999999999999999998776654

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.19  E-value=0.025  Score=48.00  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-----------CcEEEEeCCH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDG-----------LDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~   38 (297)
                      +..+|.|||+|-.|+.++..|++.|           .+++++|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3468999999999999999999874           2899999754

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.18  E-value=0.06  Score=45.69  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+|.|+|+ |.+|..+|..|++.|++|.+.+++++.++..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   40 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL   40 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            47889987 9999999999999999999999998876554

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.16  E-value=0.15  Score=47.29  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||.|..|.++|..|.+.|++|++.|..+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999997654

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=95.16  E-value=0.031  Score=47.66  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|+|||+|.-|..-|..|..+|++|+++|.+..
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            3599999999999999999999999999998754

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.5  Score=42.25  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.++++++++...
T Consensus         9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~   49 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA   49 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 89999999999999999999999988766553

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.074  Score=44.51  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=33.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      ++|.|.|+ |.+|..++..|++.|++|.+.+|++++...
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ   46 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence            68999987 999999999999999999999998876544

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.14  E-value=0.16  Score=44.81  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+ |.++|.++++++.+
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a  185 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA  185 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence            5799999999999877777778987 55778887765543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.12  E-value=0.25  Score=44.24  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a  210 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA  210 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence            689999999999988877777898 588999999887765

>PRK08328 hypothetical protein; Provisional

Probab=95.12  E-value=0.031  Score=47.24  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~   43 (297)
                      .+|.|+|+|-.|+.++..|+.+|. +++++|.+.-....
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sN   66 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSN   66 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhh
Confidence            589999999999999999999998 69999977544333

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.07  Score=45.68  Aligned_cols=43  Identities=26%  Similarity=0.365  Sum_probs=36.2

Q ss_pred             cEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ | .+|..++..|++.|++|++.+++.++++...+.+
T Consensus        18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            67889997 6 5999999999999999999999988776654433

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.10  E-value=0.09  Score=49.83  Aligned_cols=128  Identities=18%  Similarity=0.300  Sum_probs=70.4

Q ss_pred             cEEEEECCChhHHHHHHHHHH-----CCC-------cEEEEeCCHHHHHHHHHH-HHHHHHHHHHcCCCChhhhcccCCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-----DGL-------DVWLVDTDPDALVRATKS-ISSSIQKFVSKGQLSQAMGTDAPRR   72 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-----~G~-------~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~   72 (297)
                      .||.|+|+|.-|.++|..|..     .|.       +++++|+..--.+ -+.. +......+....             
T Consensus       322 ~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~-~r~~~l~~~k~~fa~~~-------------  387 (581)
T PLN03129        322 QRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTK-SRKDSLQPFKKPFAHDH-------------  387 (581)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeC-CCCccChHHHHHHHhhc-------------
Confidence            689999999999999998877     476       7888887531100 0000 111111111111             


Q ss_pred             eEEecCccc-ccC--CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecCC
Q 022407           73 LRCTSNLKD-LHS--ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        73 i~~~~~~~~-~~~--aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~~  145 (297)
                       ....++.+ ++.  +|++|=+-.-.-...+++++.+.++++.-.|+. ||..+   ..+++..+......-|....+|.
T Consensus       388 -~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~  466 (581)
T PLN03129        388 -EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFD  466 (581)
T ss_pred             -ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCC
Confidence             01235555 666  788885442222346788888888876666665 44332   22344444433233444456676


Q ss_pred             CCC
Q 022407          146 PPP  148 (297)
Q Consensus       146 p~~  148 (297)
                      |..
T Consensus       467 pv~  469 (581)
T PLN03129        467 PVE  469 (581)
T ss_pred             Cee
Confidence            653

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.067  Score=46.31  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++.+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l   44 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL   44 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57889998 9999999999999999999999998876544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.08  E-value=0.59  Score=39.94  Aligned_cols=90  Identities=29%  Similarity=0.353  Sum_probs=55.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      -++|.-||+|. |. ++..+++.|.. |+.+|+++..++.+++..+.       .+. .        .++.....  +. 
T Consensus       120 ~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~-------~~~-~--------~~~~~~~~--~~-  178 (250)
T PRK00517        120 GKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAEL-------NGV-E--------LNVYLPQG--DL-  178 (250)
T ss_pred             CCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-------cCC-C--------ceEEEccC--CC-
Confidence            46899999998 64 55566777775 99999999988877543321       111 0        11111111  11 


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ..|+|+....  .+....++.++.+.++++..++
T Consensus       179 ~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~li  210 (250)
T PRK00517        179 KADVIVANIL--ANPLLELAPDLARLLKPGGRLI  210 (250)
T ss_pred             CcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEE
Confidence            4788876543  2334566777777777766544

>TIGR02028 ChlP geranylgeranyl reductase

Probab=95.08  E-value=0.027  Score=51.68  Aligned_cols=33  Identities=30%  Similarity=0.594  Sum_probs=30.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            799999999999999999999999999998643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.06  E-value=0.085  Score=45.57  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..++..|++.|++|.+++++.+..+..
T Consensus        11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   50 (278)
T PRK08277         11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV   50 (278)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778887 8999999999999999999999998766554

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.05  E-value=0.045  Score=47.37  Aligned_cols=68  Identities=22%  Similarity=0.267  Sum_probs=50.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||- ..+|.++|..|.+.|..|+++....                                      .++.+ ++
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------------------------------~dl~~~~k  200 (282)
T PRK14180        159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------------------------------TDLKSHTT  200 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------------------------------CCHHHHhh
Confidence            68999998 5679999999999999999886432                                      23333 57


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++.       .+++++++++.
T Consensus       201 ~ADIvIsAvGkp~~i~~-------~~vk~gavVID  228 (282)
T PRK14180        201 KADILIVAVGKPNFITA-------DMVKEGAVVID  228 (282)
T ss_pred             hcCEEEEccCCcCcCCH-------HHcCCCcEEEE
Confidence            89999999975443332       45677887763

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.062  Score=45.00  Aligned_cols=38  Identities=34%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+.|.|+ |.+|..++..|++.|++|++.++++++++..
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~   40 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVA   40 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            6889987 8999999999999999999999998876654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.05  E-value=0.037  Score=45.62  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            589999999999999999999998 599999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.04  E-value=0.034  Score=52.69  Aligned_cols=32  Identities=38%  Similarity=0.510  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -.|.|||+|..|.++|..|++.|++|.++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46999999999999999999999999999986

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=95.02  E-value=0.025  Score=51.46  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            3699999999999999999999999999998765

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.02  E-value=0.038  Score=45.52  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|+|+|.+|+.++..|+.+|. +++++|.+.
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            589999999999999999999998 599999763

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.01  E-value=0.035  Score=52.72  Aligned_cols=32  Identities=38%  Similarity=0.518  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -.|.|||+|..|.++|..+++.|++|.++|++
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999999999999999999999999985

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.01  E-value=0.34  Score=43.52  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC---CHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT---DPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~---~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|.+|+++++   ++++.+.+
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~  215 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV  215 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence            6899999999999888887788999999998   56665543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.01  E-value=0.048  Score=47.62  Aligned_cols=68  Identities=22%  Similarity=0.247  Sum_probs=50.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||- ..+|.++|..|.+.|..|+++....                                      .++++ ++
T Consensus       168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------------------------------~nl~~~~~  209 (299)
T PLN02516        168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------------------------------PDPESIVR  209 (299)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------------------------------CCHHHHHh
Confidence            78999998 5569999999999999999996431                                      23333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++.       ++++++++++.
T Consensus       210 ~ADIvv~AvGk~~~i~~-------~~vk~gavVID  237 (299)
T PLN02516        210 EADIVIAAAGQAMMIKG-------DWIKPGAAVID  237 (299)
T ss_pred             hCCEEEEcCCCcCccCH-------HHcCCCCEEEE
Confidence            89999999965433333       35677887663

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=95.01  E-value=0.084  Score=44.42  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             CCCCCcEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            1 MEEKMKVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         1 M~~~~~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |.....||.+| |+ .-+|.++|..|+++|++|.+..|+.++++++...+
T Consensus         1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~   50 (246)
T COG4221           1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI   50 (246)
T ss_pred             CCCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh
Confidence            54433455555 88 67899999999999999999999999998875443

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.22  Score=42.31  Aligned_cols=39  Identities=26%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |.+|..++..|++.|++|.+.+++.+.++..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~   41 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEA   41 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46788887 7799999999999999999999998766554

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.00  E-value=0.059  Score=45.94  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      .++|.|+|+ |.+|+.++..|++.|++|++..|++++..
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   55 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK   55 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            478999996 99999999999999999999999887543

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.99  E-value=0.048  Score=48.87  Aligned_cols=142  Identities=20%  Similarity=0.256  Sum_probs=73.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Cccc
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKD   81 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~   81 (297)
                      ||+|||+ |..|..+...|.++||++.   ++.++.+.-...           .-.|           ..+.+.+ +.++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~-----------~~~~-----------~~~~~~~~~~~~   58 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV-----------TFKG-----------KELEVNEAKIES   58 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee-----------eeCC-----------eeEEEEeCChHH
Confidence            5899997 9999999999999988743   443432211111           0000           1122221 2234


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc--eeEecCC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRGA  159 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vev~~~~  159 (297)
                      ++++|+||+|.+....  .++..++   ...+++|+++++.+..+.     ..|   .++.-+|+..+...  -.++..+
T Consensus        59 ~~~~D~v~~a~g~~~s--~~~a~~~---~~~G~~VID~ss~~R~~~-----~~p---~~vpevN~~~i~~~~~~~iianp  125 (339)
T TIGR01296        59 FEGIDIALFSAGGSVS--KEFAPKA---AKCGAIVIDNTSAFRMDP-----DVP---LVVPEVNLEDLKEFNTKGIIANP  125 (339)
T ss_pred             hcCCCEEEECCCHHHH--HHHHHHH---HHCCCEEEECCHHHhCCC-----CCC---EEeCCcCHHHHhhCccCCEEECC
Confidence            6899999999986543  3333333   334667776766432211     011   23332332211110  1156666


Q ss_pred             CChHHHH-HHHHHHHHHhCCeEEEe
Q 022407          160 DTSDETF-RATKALAERFGKTVVCS  183 (297)
Q Consensus       160 ~~~~~~~-~~~~~l~~~lG~~~v~~  183 (297)
                      ++..... -.+.++.+..+-.-+.+
T Consensus       126 ~C~~t~~~l~l~pL~~~~~i~~i~v  150 (339)
T TIGR01296       126 NCSTIQMVVVLKPLHDEAKIKRVVV  150 (339)
T ss_pred             CcHHHHHHHHHHHHHHhcCccEEEE
Confidence            6654443 44566666555443433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.99  E-value=0.048  Score=47.23  Aligned_cols=68  Identities=31%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||- ..+|.++|..|.+.|..|++++...                                      .++.+ ++
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------------------------------~~l~~~~~  201 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------------------------------QNLPSIVR  201 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------------------------------CCHHHHHh
Confidence            68999998 6679999999999999999987432                                      23333 56


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.++.-..-++       .++++++++++.
T Consensus       202 ~ADIvIsAvGk~~~i~-------~~~ik~gavVID  229 (284)
T PRK14177        202 QADIIVGAVGKPEFIK-------ADWISEGAVLLD  229 (284)
T ss_pred             hCCEEEEeCCCcCccC-------HHHcCCCCEEEE
Confidence            8999999997444333       245678887764

>PRK06194 hypothetical protein; Provisional

Probab=94.96  E-value=0.097  Score=45.43  Aligned_cols=39  Identities=36%  Similarity=0.539  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|+++|++.+.++..
T Consensus         7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRA   46 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            57888886 8999999999999999999999998766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		2e-48
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		2e-48
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		3e-48
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		4e-48
3had_A	308	Biochemical Characterization And Structure Determin		4e-48
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		5e-48
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		5e-48
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		9e-48
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		1e-47
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		1e-46
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		5e-46
2hdh_A	293	Biochemical Characterization And Structure Determin		1e-45
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		5e-37
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		5e-37
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		5e-37
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		6e-37
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		7e-33
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		2e-24
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		8e-24
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		4e-23
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		4e-23
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		2e-16
3ado_A	319	Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr		4e-14
3ctv_A	110	Crystal Structure Of Central Domain Of 3-Hydroxyacy		3e-06

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 150/275 (54%), Gaps = 11/275 (4%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   S
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSIS 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT LA+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP PLMKLVEV++   TS +T  +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHE-- 267
Query: 254 GDSK---YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            DS+   + P P + + V   + GKK G G + Y+
Sbjct: 268 MDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNT+S+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIV++  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLV+VI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  187 bits (474), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIV+R
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 149/273 (54%), Gaps = 7/273 (2%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
           IAQ+    G  V LVD   D L ++ K I  S++K   K         D    + L   +
Sbjct: 30  IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78  NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
              D    +HS D++VEAIVE+  VK +LF  LDK      I ASNT S+ IT +A+AT+
Sbjct: 90  TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
           R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
           +L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+   H   
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
            ++  + P P L + V   + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/273 (37%), Positives = 153/273 (56%), Gaps = 1/273 (0%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
           IA++    G  V L D   +AL RA   I + +   V++G+L+        +RL   +++
Sbjct: 20  IAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI 79
Query: 80  KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
             L +AD+++EA  E  +VKK LF++L ++     +L +NTSSISIT +A+    P +V 
Sbjct: 80  HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVA 139
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
           G+HF NP P+MKLVEV+ G  T+ E       L   +GK  V      GFIVNR+  P  
Sbjct: 140 GLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYY 199
Query: 200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIM-KVLHTGLGDSKY 258
           +EA+  L   VA  E IDA ++ G   PMGPL+L D IG DV  ++   V +    + ++
Sbjct: 200 SEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRF 259
Query: 259 APCPLLVQYVDAGRLGKKRGIGVFDYRRVPESV 291
            P  +  + V  GRLGKK G+GV+D+R   E+V
Sbjct: 260 LPSLVQQELVIGGRLGKKSGLGVYDWRAEREAV 292

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 7/271 (2%)
Query: 22  QLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTSNL 79
           Q+    G  V LVD   D L ++ K I  S++K   K         D    + L   +  
Sbjct: 54  QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 113
Query: 80  KD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP 135
            D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+R 
Sbjct: 114 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQ 173
Query: 136 CQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195
            +  G+HF NP P+ KLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR+L
Sbjct: 174 DRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLL 233
Query: 196 MPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255
           +P + EA      G A+KEDID   KLG   P GP +L D++GLD    I+   H    +
Sbjct: 234 VPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAE 293
Query: 256 SK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           +  + P P L + V   + GKK G G + Y+
Sbjct: 294 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 324

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 7/271 (2%)
Query: 22  QLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTSNL 79
           Q+    G  V LVD   D L ++ K I  S++K   K         D    + L   +  
Sbjct: 21  QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATS 80
Query: 80  KD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP 135
            D    +HS D++VEAIVE+  VK +LF  LDK      I ASNTSS+ IT +A+AT+R 
Sbjct: 81  TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQ 140
Query: 136 CQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195
            +  G+HF NP P+ KLVEVI+   TS +TF +    ++  GK  V  +D  GFIVNR+L
Sbjct: 141 DRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLL 200
Query: 196 MPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255
           +P + EA      G A+KEDID   KLG   P GP +L D++GLD    I+   H    +
Sbjct: 201 VPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAE 260
Query: 256 SK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           +  + P P L + V   + GKK G G + Y+
Sbjct: 261 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 324 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 381
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 382 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 441
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 442 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 501
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 502 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 558
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 559 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 586

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/270 (35%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 60  GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 117
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 118 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 177
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 178 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 237
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 238 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 294
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+P   ++   +AGR G+K G G + Y
Sbjct: 295 NSRYSPLGDML--CEAGRFGQKTGKGWYQY 322

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28  GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
           G+ V  V++DP  L  A K I+ +++K  S+    Q     A  +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88  IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
           +VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +AS+T RP  VIG HF +P 
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
            +M+L+EVI    +S  T     +L+++ GK  V   +  GF+ NR+L P  N+ FF L 
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
            G +  ED+D  + + G    MGP +++D  GLDV   I K        L  G      G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           +S+Y+  PL     +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 5/232 (2%)
Query: 56  VSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAI 115
           V KG+++ A   +    +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AI
Sbjct: 365 VDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAI 424
Query: 116 LASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175
           LASNTS+ISI+ LA A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++
Sbjct: 425 LASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK 484
Query: 176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLA 234
            GK  +   D  GF+VNR+L P     F  L +       ID  M K G   PMGP  L 
Sbjct: 485 MGKNPIVVNDCPGFLVNRVLFPYFG-GFAKLVSAGVDFVRIDKVMEKFG--WPMGPAYLM 541
Query: 235 DFIGLDVCLSIMKVLHTGLGDS-KYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           D +G+D       V+  G  D  K      +    +A RLG+K G G + Y 
Sbjct: 542 DVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYE 593

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 10/281 (3%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
           IA   ++    V L + +   L      + +++Q  V KG +SQ         L+ + + 
Sbjct: 327 IATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY 386
Query: 80  KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
           +     D+++EA++E+  +K+++F++L+K      ILASNTS+I + ++   T    +++
Sbjct: 387 ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIV 446
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
           G HF +P  +M L+E++R   TS +       + ++  KT V   +  GF VNR+  P  
Sbjct: 447 GAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYT 506
Query: 200 NEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
             A F +  G A    ID  + K G   PMGP +L D +G  V ++          +  Y
Sbjct: 507 QAAMFLVECG-ADPYLIDRAISKFG--MPMGPFRLCDLVGFGVAIATATQFIENFSERTY 563
Query: 259 AP--CPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
                PL+ +   AG   +K G  ++D +R     KP+  L
Sbjct: 564 KSMIIPLMQEDKRAGEATRK-GFYLYDDKR---KAKPDPEL 600

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 29/244 (11%)
Query: 73  LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
           L+ TS+   L + D+IVE+++E   +KK+LF+ L+ I K++ I  +NTSS+ +  ++S  
Sbjct: 119 LKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVL 178
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVN 192
             P  ++G+HF NP  +++LVE+I G+ TS +         E   K  V   +   F+ N
Sbjct: 179 RDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFN 238
Query: 193 RILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP--MGPLQLADFIGLDVCLSIMKVLH 250
           R+L    +++   +Y        ID   K+ TN    MGP+ +AD  G DV   + K   
Sbjct: 239 RLLHVYFDQSQKLMYEYGYLPHQID---KIITNFGFLMGPMTVADMNGFDVMEKLKK--E 293
Query: 251 TGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY-----------------RRVPESVKP 293
            GL      P P+  +     R G+K   G + Y                 RRV ++ K 
Sbjct: 294 NGL-----EPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKS 348
Query: 294 NARL 297
           N ++
Sbjct: 349 NIQI 352

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 72  RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA 131
           ++  T+ L+ +   DI+ EA+ E  + K ++  E++++T A   L SNTS IS+  +A  
Sbjct: 61  KIEFTTTLEKVKDCDIVXEAVFEDLNTKVEVLREVERLTNAP--LCSNTSVISVDDIAER 118
Query: 132 TSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIV 191
              P + +G+H+ NPP +  LVE++    T  +T    +      GK VV  +  +  +V
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LV 176
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMK--LGTNQPM-GPLQLADFIGLDVCLSIMKV 248
           NR    +++EA   +  GV   ED+D   K  LG    + GPL   D+IGLDV       
Sbjct: 177 NRFNAAVLSEASRXIEEGVRA-EDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLY 235
Query: 249 LHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           L+   GD K+ P   L + +  G +G K G G+++Y
Sbjct: 236 LYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 16/273 (5%)
Query: 20  IAQLGVMDGLDVWLVDTDPDALVRATK---SISSSIQKFVS---KGQLSQAMGTDAPRRL 73
           IA      G  V   D + DAL  A K    +++  +K V+    G   +A+G      +
Sbjct: 19  IAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG-----I 73
Query: 74  RCTSNL-KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
           R + +L + +  AD+++EA+ ES D+K+ ++++L ++  A  I A+N+S++  + L   T
Sbjct: 74  RYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYT 133
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQDYAGFIV 191
            R  + + +HF N   +    EV+    T  E ++     A   G   +   ++ AG+++
Sbjct: 134 GRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVL 193
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHT 251
           N +L+P+++ A   L  G+A  E ID   ++GT  P GP ++ D +GL    +I  V  +
Sbjct: 194 NSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSV--S 251
Query: 252 GLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           G    ++A   L   Y+D G+LG   G G + Y
Sbjct: 252 GPKQREFAAY-LKENYIDKGKLGLATGEGFYRY 283

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 6/218 (2%)
Query: 21  AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL--RCTSN 78
           A L    G  V L D +   +  A ++I   ++     G L  ++  +    L   C + 
Sbjct: 19  AMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNI 78
Query: 79  LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
            + +  A  I E + E  ++KKK+F++LD I     IL+S+TS +  ++L +      Q 
Sbjct: 79  QEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQC 138
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
           I  H +NPP  + LVE++   +T+  T   T AL ++ G+  +   ++ AGF++NR+   
Sbjct: 139 IVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYA 198
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
           +I+EA+  +  G+ +  D+D  M  G       +GPL+
Sbjct: 199 IISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLE 236

>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 6/218 (2%)
Query: 21  AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL--RCTSN 78
           A L    G  V L D +P  +  A ++I   ++     G L  ++  +    L   CT+ 
Sbjct: 22  AMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNL 81
Query: 79  LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
            + +     I E + E+ D+K+K+F++LD I     +L+S++S +  ++L +  +   Q 
Sbjct: 82  AEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQC 141
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
           I  H +NPP  + LVE++   +TS  T   T AL  + G++ V   ++  GF++NR+   
Sbjct: 142 IVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYA 201
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
           +I+EA+  +  G+ +  D+D  M  G       +GPL+
Sbjct: 202 IISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLE 239

>pdb|3CTV|A Chain A, Crystal Structure Of Central Domain Of 3-Hydroxyacyl-Coa Dehydrogenase From Archaeoglobus Fulgidus Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
           INEA   +  GVAT +DID  +KLG N+P GP +LA   G +     ++ L    G   +
Sbjct: 28  INEAVKLVEXGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGKKIF 87
Query: 259 APCPLLVQ 266
            P   L +
Sbjct: 88  EPAKTLKE 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-162
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-159
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	2e-82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	1e-143
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	2e-94
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	6e-93
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-10
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	2e-92
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	9e-12
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	5e-90
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	2e-12
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-89
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-10
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	2e-88
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	7e-12
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	4e-59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	5e-04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	5e-04

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  452 bits (1166), Expect = e-162
 Identities = 114/288 (39%), Positives = 160/288 (55%), Gaps = 7/288 (2%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKG----- 59
           +K + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K   K      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74

Query: 60  QLSQAMGTDAPRRLRCTSNLKDL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118
           +            +  +++   + HS D++VEAIVE+  VK +LF  LDK      I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134

Query: 119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGK 178
           NTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++  GK
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194

Query: 179 TVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238
             V  +D  GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254

Query: 239 LDVCLSIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           LD    I+   H     +  + P P L + V   + GKK G G + Y+
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  450 bits (1160), Expect = e-159
 Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 1/296 (0%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
           M   ++ + V+GSG MG+GIA++    G  V L D   +AL RA   I + +   V++G+
Sbjct: 1   MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGK 60

Query: 61  LSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
           L+        +RL   +++  L +AD+++EA  E  +VKK LF++L ++     +L +NT
Sbjct: 61  LTAETCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNT 120

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           SSISIT +A+    P +V G+HF NP P+MKLVEV+ G  T+ E       L   +GK  
Sbjct: 121 SSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQP 180

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240
           V      GFIVNR+  P  +EA+  L   VA  E IDA ++ G   PMGPL+L D IG D
Sbjct: 181 VRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQD 240

Query: 241 VCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNA 295
           V  ++   +      + ++ P  +  + V  GRLGKK G+GV+D+R   E+V    
Sbjct: 241 VNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLE 296

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  255 bits (654), Expect = 2e-82
 Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 12/206 (5%)

Query: 81  DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIG 140
                 ++    V       K+  + D +T+   +L   T   +   LA   +RP  VI 
Sbjct: 286 RAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVID 345

Query: 141 MHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMIN 200
                     K+V +   A   D   R      ++ GKTV+   DY G ++ R +  +IN
Sbjct: 346 KMAG------KVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIIN 399

Query: 201 EAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAP 260
           EA   L  GVA+++DID  M+LG N P GPL     +G    L +++ L    G+ +Y P
Sbjct: 400 EALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRP 459

Query: 261 CPLLVQ--YVDAGRLGKKRGIGVFDY 284
           C LL Q   +++G   +    G   +
Sbjct: 460 CSLLRQRALLESGYESE----GHHHH 481

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  403 bits (1039), Expect = e-143
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 27/288 (9%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ 60
               MKV  V+G+G MG GIA   +    +V L D    AL  A + I   +        
Sbjct: 9   HHHHMKV-FVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLS------ 60

Query: 61  LSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120
                      ++  T+ L+ +   DI++EA+ E  + K ++  E++++T A   L SNT
Sbjct: 61  -----------KIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLTNA--PLCSNT 107

Query: 121 SSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTV 180
           S IS+  +A     P + +G+H+MNPP +M LVE++    T  +T    +      GK V
Sbjct: 108 SVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEV 167

Query: 181 VCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMK--LGTNQPM-GPLQLADFI 237
           V  +     +VNR    +++EA   +  GV   ED+D   K  LG    + GPL   D+I
Sbjct: 168 VVCKGQ--SLVNRFNAAVLSEASRMIEEGVRA-EDVDRVWKHHLGLLYTLFGPLGNLDYI 224

Query: 238 GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
           GLDV       L+   GD K+ P   L + +  G +G K G G+++Y 
Sbjct: 225 GLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYG 272

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  289 bits (741), Expect = 6e-93
 Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 13/282 (4%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD 68
            V+G+G MG GIA      G  + + D +   + +     +  +   V KG+++ A   +
Sbjct: 318 AVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAE 377

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AILASNTS+ISI+ L
Sbjct: 378 VLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLL 437

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           A A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++ GK  +   D  G
Sbjct: 438 AKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPG 497

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-----AGMKLGTNQPMGPLQLADFIGLDVCL 243
           F+VNR+L P        +  G      ID      G       PMGP  L D +G+D   
Sbjct: 498 FLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVMEKFGW------PMGPAYLMDVVGIDTGH 550

Query: 244 SIMKVLHTGLGDSKYAPCPLLVQY-VDAGRLGKKRGIGVFDY 284
               V+  G  D         +    +A RLG+K G G + Y
Sbjct: 551 HGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 592

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+N +++P+  E    L  G+     + D G+  G   P+   G L+  D IG+   +++
Sbjct: 627 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL 686

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
                  LG   Y P   L +    G+
Sbjct: 687 ADQYAE-LGA-LYHPTAKLREMAKNGQ 711

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  288 bits (738), Expect = 2e-92
 Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 5/282 (1%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
           K+K + ++G G MGSGIA   ++    V L + +   L      + +++Q  V KG +SQ
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                    L+ + + +     D+++EA++E+  +K+++F++L+K      ILASNTS+I
Sbjct: 371 EKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI 430

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
            + ++   T    +++G HF +P  +M L+E++R   TS +       + ++  KT V  
Sbjct: 431 DLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVV 490

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVC 242
            +  GF VNR+  P    A F +  G A    ID A  K G   PMGP +L D +G  V 
Sbjct: 491 GNCTGFAVNRMFFPYTQAAMFLVECG-ADPYLIDRAISKFGM--PMGPFRLCDLVGFGVA 547

Query: 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           ++          + +     ++    +  R G+    G + Y
Sbjct: 548 IATATQFIENFSE-RTYKSMIIPLMQEDKRAGEATRKGFYLY 588

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+     P++NEA      G+A K  D+D    +G   P    G +  AD IG     S 
Sbjct: 627 IIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSR 686

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
           +       G+  + PC  L +    G 
Sbjct: 687 LDEWSKAYGE-FFKPCAFLAERGSKGV 712

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  274 bits (703), Expect = 5e-90
 Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 16/287 (5%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD 68
           GV+G G MG GIA      G+ V  V++DP  L  A K I+ +++K  S+   +      
Sbjct: 41  GVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--AS 98

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
           A  +LR +S+ K+L + D++VEA+ E  ++KKK+F+EL  + K  A L +NTS++++  +
Sbjct: 99  AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           AS+T RP  VIG HF +P  +M+L+EVI    +S  T     +L+++ GK  V   +  G
Sbjct: 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG 218

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           F+ NR+L P  N+ FF L  G +  ED+D    + G    MGP +++D  GLDV   I K
Sbjct: 219 FVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLEEFGF--KMGPFRVSDLAGLDVGWKIRK 275

Query: 248 -------VLHTGLGDSKYAP---CPLLVQYVDAGRLGKKRGIGVFDY 284
                   L  G    K       PL     +AGR G+K G G + Y
Sbjct: 276 GQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQY 322

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+ R L  +INEAF  L  G+A + E ID     G   P    GP+  A  +GL   L  
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418

Query: 246 MKVLHTGLGDSK-YAPCPLLVQYVDAGR 272
           ++  +    D     P   L + V  G 
Sbjct: 419 LQKYYRQNPDIPQLEPSDYLRRLVAQGS 446

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  273 bits (701), Expect = 1e-89
 Identities = 72/277 (25%), Positives = 129/277 (46%), Gaps = 13/277 (4%)

Query: 9   GVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD 68
            ++G G MG  +A    + G++ +LV  +     +  + +     +  S  +L+      
Sbjct: 58  AIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEK 114

Query: 69  APRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL 128
               L+ TS+   L + D+IVE+++E   +KK+LF+ L+ I K++ I  +NTSS+ +  +
Sbjct: 115 INANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEI 174

Query: 129 ASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188
           +S    P  ++G+HF NP  +++LVE+I G+ TS +         E   K  V   +   
Sbjct: 175 SSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS 234

Query: 189 FIVNRILMPMINEAFFTLYTGVATKEDID-AGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           F+ NR+L    +++   +Y        ID      G    MGP+ +AD  G DV   + K
Sbjct: 235 FVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGF--LMGPMTVADMNGFDVMEKLKK 292

Query: 248 VLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
                  ++   P P+  +     R G+K   G + Y
Sbjct: 293 -------ENGLEPNPIEKEMWRLKRYGRKTNKGFYKY 322

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           ++N +L P +NE +  +  GV +    ID    LG   P+   GP++     GLD   ++
Sbjct: 358 VINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANM 417

Query: 246 MKVLHTGLGD-SKYAPCPLLVQY-VDAGRLGKKRGIGVFDYR 285
           +    +     S Y     L    V  G  G   G     + 
Sbjct: 418 LVHWSSLEPKESAYIVADALKTANVSTGSSGSSGGHHHHHHH 459

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  278 bits (712), Expect = 2e-88
 Identities = 103/296 (34%), Positives = 156/296 (52%), Gaps = 24/296 (8%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +  +GV+G G MG GIA      G+ V  V++DP  L  A K I+ +++K  S+   + 
Sbjct: 315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG 374

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
                A  +LR +S+ K+L + D++VEA+ E  ++KKK+F+EL  + K  A L +NTS++
Sbjct: 375 Q--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL 432

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           ++  +AS+T RP  VIG HF +P  +M+L+EVI    +S  T     +L+++ GK  V  
Sbjct: 433 NVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV 492

Query: 184 QDYAGFIVNRILMPMINEAFFTLYTGVATKEDID-----AGMKLGTNQPMGPLQLADFIG 238
            +  GF+ NR+L P  N+ FF L  G +  ED+D      G        MGP +++D  G
Sbjct: 493 GNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLEEFGF------KMGPFRVSDLAG 545

Query: 239 LDVCLSIMK-------VLHTGLGDSKYAP---CPLLVQYVDAGRLGKKRGIGVFDY 284
           LDV   I K        L  G    K       PL     +AGR G+K G G + Y
Sbjct: 546 LDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQY 601

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+ R L  +INEAF  L  G+A + E ID     G   P    GP+  A  +GL   L  
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697

Query: 246 MKVLHTGLGDSK-YAPCPLLVQYVDAGR 272
           ++  +    D     P   L + V  G 
Sbjct: 698 LQKYYRQNPDIPQLEPSDYLRRLVAQGS 725

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score =  183 bits (466), Expect = 4e-59
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 173 AERFGKTVVCSQDYAGFIVN--RILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP 230
               G+  +     A   +N        INEA   +  GVAT +DID  +KLG N+P GP
Sbjct: 1   GHSKGRPQID-SSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIG 280
            +LA   G +     ++ L    G   + P   L +      L   +  G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Length = 140

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 4  KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48
           M ++ + G G++G  +A+     G D+ L+D D D   +A+  I
Sbjct: 4  GMYII-IAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI 47

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Length = 155

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 2  EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48
          ++   ++ + G G++GS IA L    G  V +VD +  A  R     
Sbjct: 17 QKSKYIV-IFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.95
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.95
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.9
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.88
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.88
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.88
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.88
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.87
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.85
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.85
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.85
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.84
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.84
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.83
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.83
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.83
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.83
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.82
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.81
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.79
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.79
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.78
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.78
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.78
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.78
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.77
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.77
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.77
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.76
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.75
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.75
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.75
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.75
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.74
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.74
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.74
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.74
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.73
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.73
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.73
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.73
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.72
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.7
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.7
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.69
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.68
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.68
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.68
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.67
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.67
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.66
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.65
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.65
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.65
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.64
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.64
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.63
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.61
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.61
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.6
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.58
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.57
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.57
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.57
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.55
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.55
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.55
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.54
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.52
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.52
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.51
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.49
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.49
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.47
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.47
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.46
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.46
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.45
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.45
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.43
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.42
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.02
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.32
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.31
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.3
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.29
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.24
3tl2_A	315	Malate dehydrogenase; center for structural genomi	99.21
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.2
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.18
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.18
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.17
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	99.14
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.13
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.12
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.11
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.11
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	99.11
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.1
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.09
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	99.08
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	99.08
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	99.08
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.01
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.99
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.97
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.96
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.94
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.94
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.91
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.91
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.9
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.89
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.89
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.89
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.88
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.88
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.88
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.85
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.84
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.84
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.82
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.82
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.79
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.79
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.78
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.78
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.75
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.73
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.73
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.73
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.72
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.71
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.71
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.71
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.7
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.69
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.69
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.68
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.68
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.67
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.67
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.64
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.63
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.63
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.6
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.6
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.58
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.56
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.56
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.54
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.53
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.5
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.47
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.45
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.4
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.39
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.38
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.36
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.36
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.28
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.25
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.23
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.22
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	98.22
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.22
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.22
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.21
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.21
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.2
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.19
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.16
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.14
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.13
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.11
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.11
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.1
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.1
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.08
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.08
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.07
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	98.06
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.06
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.06
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.05
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.05
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.05
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.04
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.02
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.01
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.01
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.0
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.99
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.99
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.98
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.98
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.97
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.96
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.96
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.96
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.92
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.91
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.9
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.9
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.89
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.86
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.85
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.85
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.84
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.84
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.83
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.82
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.82
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.82
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.79
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.79
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.78
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.78
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.77
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.77
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.74
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.72
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.71
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.71
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.7
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.69
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.69
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.68
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.67
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.67
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.67
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.66
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.66
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.65
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.63
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.62
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.6
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.6
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.59
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.57
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.57
4had_A	350	Probable oxidoreductase protein; structural genomi	97.56
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.55
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.53
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.53
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.51
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.5
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.5
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.46
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.44
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.43
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.41
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.4
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.39
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.39
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.39
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.38
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.37
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.33
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.3
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.29
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.24
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.24
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.23
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.22
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.2
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.19
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.19
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.15
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.14
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.13
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.08
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.08
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.07
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.06
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.05
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.01
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.0
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.99
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.98
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.98
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.97
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.97
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.95
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.93
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	96.92
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.91
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.91
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.9
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.89
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.85
1lnq_A	336	MTHK channels, potassium channel related protein;	96.85
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.85
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.85
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.81
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.81
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.76
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.75
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.75
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.72
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.7
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.7
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.67
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.67
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.65
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.63
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.63
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.61
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.58
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.57
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.57
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.55
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.53
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.51
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.47
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.45
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.45
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	96.44
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.44
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.41
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.4
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.4
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.37
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.37
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.37
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.36
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.36
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.36
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.35
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.35
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.34
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	96.33
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.32
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.31
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.3
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.3
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.29
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.29
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	96.28
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.27
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.25
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.23
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.22
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.22
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	96.2
3dme_A	369	Conserved exported protein; structural genomics, P	96.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.17
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	96.17
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.17
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.17
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.16
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.16
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.15
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.15
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.15
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.14
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.14
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	96.13
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.09
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.07
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.07
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.05
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.03
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.02
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.02
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.02
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.02
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.01
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.01
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	95.99
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.95
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.95
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.95
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	95.95
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.94
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.93
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.93
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.92
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.91
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.9
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	95.9
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.89
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	95.88
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.88
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.88
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.87
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.86
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.85
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.84
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.84
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	95.84
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.83
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.83
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.81
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	95.81
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.81
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.78
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.77
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	95.76
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	95.75
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.75
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.75
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.75
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.74
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.74
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	95.74
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.73
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.73
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.73
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.72
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.71
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.71
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	95.7
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	95.7
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.7
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.7
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.7
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.7
3imf_A	257	Short chain dehydrogenase; structural genomics, in	95.69
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.69
3atr_A	453	Conserved archaeal protein; saturating double bond	95.68
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.68
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.67
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	95.67
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.67
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.66
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.66
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.66
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.66
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	95.65
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.65
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	95.64
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.63
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.63
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.63
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	95.63
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.62
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	95.62
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.6
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.57
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.57
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.57
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.55
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.55
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.55
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.55
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.54
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.54
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	95.54
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.53
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.52
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	95.52
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.52
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.52
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.51
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.51
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	95.51
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.49
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.49
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.49
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.49
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.48
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.47
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.46
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.46
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.45
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	95.45
1spx_A	278	Short-chain reductase family member (5L265); paral	95.45

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=2.8e-63  Score=458.75  Aligned_cols=287  Identities=38%  Similarity=0.621  Sum_probs=272.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |...++||+|||+|.||.+||..|+++|++|++||+++++++++.+++++.+++++++|.++.++.+....+++.+++++
T Consensus         1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (483)
T 3mog_A            1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH   80 (483)
T ss_dssp             ---CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH
Confidence            54457899999999999999999999999999999999999999999999999999999998888888888999999998


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~  160 (297)
                      ++++||+||+|+|++.++|+.+++++.+.+++++|++||||+++++++++.+.++.+++|+|||+|+++++++|++.+..
T Consensus        81 ~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~  160 (483)
T 3mog_A           81 ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLA  160 (483)
T ss_dssp             GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSS
T ss_pred             HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchH
Q 022407          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD  240 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~  240 (297)
                      +++++++++.++++.+|+++++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||+|||+++|.+|+|
T Consensus       161 Ts~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld  240 (483)
T 3mog_A          161 TAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQD  240 (483)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407          241 VCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV  287 (297)
Q Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~  287 (297)
                      +++.+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|+++
T Consensus       241 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~  288 (483)
T 3mog_A          241 VNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAE  288 (483)
T ss_dssp             HHHHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSC
T ss_pred             HHHHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCC
Confidence            9999999998775 5668999999999999999999999999999763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=8.1e-63  Score=449.50  Aligned_cols=275  Identities=27%  Similarity=0.456  Sum_probs=257.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .++||+|||+|.||.+||..|+++|++|++||++++   ++.+++++.+++++++|.++.++.+..+.++++++++++++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~  129 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS  129 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc
Confidence            468999999999999999999999999999999998   45677888899999999998888888889999999998899


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+||+.++|+++|++|.+.+++++||+||||+++++++++.+.+|++++|+|||+|++.++++||+++..|++
T Consensus       130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~Ts~  209 (460)
T 3k6j_A          130 NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSS  209 (460)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSCCH
T ss_pred             cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++++.++++.+|+++++++|.|||++||++.++++||+.++++.++++++||.+++ ++|+|+|||+++|.+|+|+++
T Consensus       210 e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~-~~G~pmGPf~l~D~vGlD~~~  288 (460)
T 3k6j_A          210 QAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIIT-NFGFLMGPMTVADMNGFDVME  288 (460)
T ss_dssp             HHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH-HHTBSSCHHHHHHHHCTHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HcCCCcCHHHHHHHhchHHHH
Confidence            9999999999999999999999999999999999999999999555599999999998 899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~  289 (297)
                      .+.+.+    +   +.|++++++|+++|++|+|+|+|||+|+++++
T Consensus       289 ~i~~~~----~---~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~  327 (460)
T 3k6j_A          289 KLKKEN----G---LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQ  327 (460)
T ss_dssp             HHHHHS----C---CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTC
T ss_pred             HHHHHh----c---cCchHHHHHHHHCCCCeeecCCEEEECCCCCC
Confidence            988764    2   35679999999999999999999999987654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.1e-62  Score=470.84  Aligned_cols=282  Identities=35%  Similarity=0.539  Sum_probs=260.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .++||+|||+|.||++||..++.+|++|+++|++++.++++.+.+.+.+++.++++..+.  ......+++.++++++++
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~  392 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG--QASAKPKLRFSSSTKELS  392 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCCEEEESCGGGGG
T ss_pred             cccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccc--hhhhhhhhcccCcHHHHh
Confidence            478999999999999999999999999999999999999999999999888777665432  234557888999999999


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+|||+|+|+.++|+++|++|++++++++|++||||+++++++++.+.+|+|++|+||||||+.+++|||+++..|++
T Consensus       393 ~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~  472 (742)
T 3zwc_A          393 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSP  472 (742)
T ss_dssp             SCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCH
T ss_pred             hCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++.+++||+|++++|.|||++||++.++++|+++++++| +++++||.+++ ++|||+|||+++|.+|+|+..
T Consensus       473 e~~~~~~~~~~~lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG-~~~~~id~a~~-~~G~pmGPf~l~D~vGlDv~~  550 (742)
T 3zwc_A          473 TTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGW  550 (742)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCCCChHHHHHHhCHHHHH
Confidence            9999999999999999999999999999999999999999999998 68999999997 699999999999999999999


Q ss_pred             HHHHHHHhhcCC----------CCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407          244 SIMKVLHTGLGD----------SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE  289 (297)
Q Consensus       244 ~~~~~~~~~~~~----------~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~  289 (297)
                      .+.+.++...++          ..+++++++++|+++|++|+|+|+|||+|+++++
T Consensus       551 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~  606 (742)
T 3zwc_A          551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLG  606 (742)
T ss_dssp             HHHHHTTSSSTTSCTTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTC
T ss_pred             HHHHHHHhhCcccCccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCC
Confidence            999887654332          1345678999999999999999999999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=1.2e-60  Score=419.57  Aligned_cols=285  Identities=40%  Similarity=0.613  Sum_probs=263.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-----hhcccCCceEE
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-----MGTDAPRRLRC   75 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~i~~   75 (297)
                      |...+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+++.+++++++|.++..     +......++++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            5556789999999999999999999999999999999999999988888888888888876543     23334456788


Q ss_pred             ecCcc-cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee
Q 022407           76 TSNLK-DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        76 ~~~~~-~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve  154 (297)
                      +++++ .+++||+||+|+|++.++++.+++++.+.++++++|+|++|+++++++++.+.++.++++.||++|++.+++++
T Consensus        91 ~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~  170 (302)
T 1f0y_A           91 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE  170 (302)
T ss_dssp             ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred             ecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence            88887 48999999999999999999999999999999999999999999999999888888999999999998899999


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHH
Q 022407          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLA  234 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~  234 (297)
                      ++.+..+++++++.+.++++.+|+.++++++.+|+++||++.+++||+++++++|++++++||.+++.|+|||+|||+++
T Consensus       171 i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~  250 (302)
T 1f0y_A          171 VIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL  250 (302)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022407          235 DFIGLDVCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       235 D~~Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~  285 (297)
                      |.+|+|.++.+++.+++.+ ++++|+|+++|++|+++|++|+|+|+|||+|+
T Consensus       251 D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            9999999999999999988 77679999999999999999999999999994

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=3.5e-61  Score=417.24  Aligned_cols=258  Identities=31%  Similarity=0.486  Sum_probs=241.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||+|.||.+||.+|+ +|++|++||+++++++++.+.             +    .+..+++++++++++++++|
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~~a   74 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVKDC   74 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGGGC
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHcCC
Confidence            78999999999999999999 999999999999988877433             1    23345677888888889999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHH
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDET  165 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~  165 (297)
                      |+||+|+||+.++|+.+|+++++.  +++|+++|||+++++++++.+.++.+++|+|||+|++.++++|++++..|++++
T Consensus        75 DlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~~  152 (293)
T 1zej_A           75 DIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKT  152 (293)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHHH
T ss_pred             CEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHHH
Confidence            999999999999999999999887  899999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---cHHHHHHhhchHHH
Q 022407          166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVC  242 (297)
Q Consensus       166 ~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~  242 (297)
                      +++++++++.+|+++++++|.  |++||++.++++||+.++++|+ ++++||.+++.|+|+|+   |||+++|.+|+|++
T Consensus       153 ~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv-~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          153 VAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTC-CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            999999999999999999986  9999999999999999999987 99999999999999999   99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022407          243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~  286 (297)
                      ..+++.+++.+++++|+|+++|++|+++|++|+|+|+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            99999999999988899999999999999999999999999965

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=6e-61  Score=417.61  Aligned_cols=277  Identities=27%  Similarity=0.458  Sum_probs=258.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKG-QLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++||+|||+|.||++||..|+++|++|++||+++++++++.+.+++.++++.++| .++.+..+....+++.++++++ +
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            6899999999999999999999999999999999999999999999999888887 6666666666677888889876 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      ++||+||+|+|++.+.++.+++++.+.++++++++||||+++++++++.+.++.+++++||++|++.++++|++++..++
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t~  163 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTD  163 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTSC
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCCC
Confidence            99999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHH
Q 022407          163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV  241 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~  241 (297)
                      +++++.++++++.+|++++++ ++.|||++||++.++++||++++++|++++++||.+++.|+|+|+|||+++|.+|||+
T Consensus       164 ~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld~  243 (283)
T 4e12_A          164 PEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTT  243 (283)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHHH
Confidence            999999999999999999998 7899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022407          242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY  284 (297)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y  284 (297)
                      ++.++++   ..++++|+|++++++|+++|++|+|+|+|||+|
T Consensus       244 ~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          244 AYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            9999883   333345788999999999999999999999999

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=1.3e-58  Score=404.07  Aligned_cols=240  Identities=27%  Similarity=0.410  Sum_probs=225.9

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~   81 (297)
                      ..+.||+|||+|.||++||..++.+|++|++||++++.++++.+++++.++++.++|.++.. ..+..+.+++.++++++
T Consensus         4 p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            34689999999999999999999999999999999999999999999999999999988654 45566788999999976


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~  160 (297)
                       +++||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+||||||+++++|||+++..
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~  163 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPE  163 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTT
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCC
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHh
Q 022407          161 TSDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADF  236 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~  236 (297)
                      |++++++++..+++.+|++|+++ +|.|||++||++.++++||++++++|+++++|||.+++.|+|+|   +|||+++|+
T Consensus       164 Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl  243 (319)
T 3ado_A          164 TSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHL  243 (319)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhh
Confidence            99999999999999999999854 89999999999999999999999999999999999999999987   899999999


Q ss_pred             hchHHH
Q 022407          237 IGLDVC  242 (297)
Q Consensus       237 ~Gl~~~  242 (297)
                      .|++..
T Consensus       244 ~G~~~~  249 (319)
T 3ado_A          244 NAEGML  249 (319)
T ss_dssp             TTTSHH
T ss_pred             cCccHH
Confidence            997754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-58  Score=445.01  Aligned_cols=279  Identities=27%  Similarity=0.485  Sum_probs=248.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..|+++||+|++||++++.++++.+++++.+++++++|.+++++.+....+++.+++++.++
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~  390 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFR  390 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGT
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHC
Confidence            35789999999999999999999999999999999999999999999999998889888777777889999999997799


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|++.+..|++
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~  470 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSA  470 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|+++++++|.+||++||++.++++|++.++++| +++++||.++ .++|+|+|||+++|.+|+|+++
T Consensus       471 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G-~~~e~id~~~-~~~g~p~Gp~~l~D~vGld~~~  548 (725)
T 2wtb_A          471 QVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECG-ADPYLIDRAI-SKFGMPMGPFRLCDLVGFGVAI  548 (725)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhchHHHH
Confidence            9999999999999999999999999999999999999999999997 7999999999 7999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022407          244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~  285 (297)
                      .+++.+++.++++.|.| +++++|+++|++|+|+|+|||+|+
T Consensus       549 ~i~~~~~~~~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~  589 (725)
T 2wtb_A          549 ATATQFIENFSERTYKS-MIIPLMQEDKRAGEATRKGFYLYD  589 (725)
T ss_dssp             HHHHHHHHHSGGGCCCC-THHHHHHTTC--------------
T ss_pred             HHHHHHHHhcCCccCCh-HHHHHHHHCCCceecCCceeEeCC
Confidence            99999999888722898 999999999999999999999995

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=3.2e-58  Score=443.82  Aligned_cols=279  Identities=34%  Similarity=0.518  Sum_probs=265.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .++||+|||+|.||.+||..|+++||+|++||+++++++.+.+++++.+++++++|.+++++.+....+++.+++++.++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~  392 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFG  392 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGG
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999888777777778889999997799


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+||+.++|+.+++++.+++++++||+||||+++++++++.+.++.+++|+|||+|++.++++|++.+..|++
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~  472 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSD  472 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCH
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|+.+++++|.+||++||++.++++|++.++++| +++++||.++ .++|+|+|||+++|.+|+|+++
T Consensus       473 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G-~~~~~id~~~-~~~G~p~Gp~~l~D~vGld~~~  550 (715)
T 1wdk_A          473 LAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVM-EKFGWPMGPAYLMDVVGIDTGH  550 (715)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999999997 7999999999 7899999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCc--HHHHHHHHcCCCCcccCCcccccC
Q 022407          244 SIMKVLHTGLGDSKYAPC--PLLVQYVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~g~~G~~~g~Gfy~y~  285 (297)
                      .+++.+++.+++ +|+|+  +++++|+++|++|+|+|+|||+|+
T Consensus       551 ~i~~~~~~~~~~-~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          551 HGRDVMAEGFPD-RMKDDRRSAIDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             HHHHHHHHHCHH-HHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred             HHHHHHHHhcCC-ccCCChHHHHHHHHhCchhhhcCCcEEEecc
Confidence            999999988876 79998  999999999999999999999996

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=3.3e-56  Score=411.39  Aligned_cols=281  Identities=35%  Similarity=0.537  Sum_probs=250.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+.+++.+++++++|.++.++.+....  +.++++++++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~--~i~~~~~~~~  113 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKL--RFSSSTKELS  113 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCE--EEESCGGGGT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh--hhcCCHHHHC
Confidence            36799999999999999999999999999999999999999988888888777776544333222223  3467777799


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD  163 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~  163 (297)
                      +||+||+|+|++.++|+.+++++.+.+++++||++|||+++++++++.+.++.+++|+|||+|++.++++|++.+..+++
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~  193 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSP  193 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407          164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL  243 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~  243 (297)
                      ++++.+.++++.+|++++++++.+||++||++.++++|++.++++| +++++||.+++ ++|+|+|||+++|.+|+|++.
T Consensus       194 e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~G-~~~~~id~~~~-~~g~p~Gp~~l~D~~GlD~~~  271 (463)
T 1zcj_A          194 TTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGW  271 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCCCcHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999999998 89999999998 899999999999999999999


Q ss_pred             HHHHHHH---hh-------cCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407          244 SIMKVLH---TG-------LGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       244 ~~~~~~~---~~-------~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~  288 (297)
                      .+++.+.   ..       ..++.+++++++++|+++|++|+|+|+|||+|++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~Gfy~y~~~g  326 (463)
T 1zcj_A          272 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPL  326 (463)
T ss_dssp             HHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBSSEEESSTT
T ss_pred             HHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCeeccCCCCC
Confidence            9998772   22       122233557999999999999999999999996433

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.95  E-value=6.5e-28  Score=222.73  Aligned_cols=154  Identities=31%  Similarity=0.450  Sum_probs=138.0

Q ss_pred             cCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHH
Q 022407          119 NTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPM  198 (297)
Q Consensus       119 ~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~  198 (297)
                      .+++.+.++.+  ..+|.++++.++++    .+++|++.+..|++++++.+..+++++|++++.++|.|||++||++.++
T Consensus       324 ~~~~~~~~~~~--~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQALA--IRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHHH--HHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHHh--hccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            45555555552  24568899999987    6789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccC
Q 022407          199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRG  278 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g  278 (297)
                      +|||++++++|+++++|||.+++.|+|||+|||+|+|.+|++.++.+++.+++.+++++|+|+++|++|+++|++|..-|
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~~  477 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESEG  477 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999987665433

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.95  E-value=4.7e-29  Score=185.22  Aligned_cols=106  Identities=27%  Similarity=0.362  Sum_probs=90.2

Q ss_pred             HhCCeEE-EeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhc
Q 022407          175 RFGKTVV-CSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL  253 (297)
Q Consensus       175 ~lG~~~v-~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~  253 (297)
                      .++|.++ .++|.|||++||++.+++|||++++++|+++++|||.+++.|+|||+|||+++|.+|++.+..+++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3678888 889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHcCCCCcccCCc
Q 022407          254 GDSKYAPCPLLVQYVDAGRLGKKRGIG  280 (297)
Q Consensus       254 ~~~~~~~~~~l~~~~~~g~~G~~~g~G  280 (297)
                      ++++|+|+++|++|+++|++|+|+|+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            987899999999999999999999988

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.90  E-value=3.1e-23  Score=180.64  Aligned_cols=192  Identities=18%  Similarity=0.254  Sum_probs=143.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++||+|||+|.||.+||.+|+++||+|++|||++++.+.+           .+.|.             +..+++++ ++
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~a~s~~e~~~   58 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----------VAAGA-------------SAARSARDAVQ   58 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EECSSHHHHHT
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HHcCC-------------EEcCCHHHHHh
Confidence            5799999999999999999999999999999999988876           55664             56777777 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHH--HHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCC-------cc
Q 022407           84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~  152 (297)
                      +||+||.|+|++..++..++..  +.+.++++.+++ ++|+++.. .++++.+..    .|.+|++.|-..       +.
T Consensus        59 ~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~----~G~~~lDaPVsGg~~~A~~G~  134 (300)
T 3obb_A           59 GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE----RGLAMLDAPVSGGTAGAAAGT  134 (300)
T ss_dssp             TCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHT----TTCEEEECCEESCHHHHHHTC
T ss_pred             cCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCEEEecCCCCCHHHHHhCC
Confidence            9999999999988876655543  455556666555 44444433 456665532    245666665211       12


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +.++.+  ++++++++++++|+.+|++++++++. .|   .++|+++.    ..+.|++.++++.+++++.+-.++..+.
T Consensus       135 L~imvG--G~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~  212 (300)
T 3obb_A          135 LTFMVG--GDAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSS  212 (300)
T ss_dssp             EEEEEE--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred             EEEEEe--CCHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCc
Confidence            445555  78999999999999999999999863 23   36777664    3578999999998899999988887665


Q ss_pred             CC
Q 022407          225 NQ  226 (297)
Q Consensus       225 g~  226 (297)
                      +.
T Consensus       213 ~~  214 (300)
T 3obb_A          213 GG  214 (300)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.88  E-value=7.8e-22  Score=169.51  Aligned_cols=212  Identities=13%  Similarity=0.107  Sum_probs=155.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..|+++|++ |.+||+++++++.+.+.          .|             +...+++++ ++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHhc
Confidence            6899999999999999999999999 99999999887665211          12             245667765 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCC-----CCCcceeEecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP-----PLMKLVEVIRG  158 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~-----~~~~~vev~~~  158 (297)
                      +||+||+|+|++.  ..+++.++.+.+++++++++++++++.+.+++.+..+   -..|++.|.     ...+...++. 
T Consensus        68 ~~Dvvi~av~~~~--~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDSA--FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHHH--HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHHH--HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE-
Confidence            9999999999774  3678888888888899999999998887776655431   225666541     1223333333 


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEeccc--hhh-----hHHHHH--HHHHHHHHHHHHcCCCCHHHH--------HHHHh
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQDY--AGF-----IVNRIL--MPMINEAFFTLYTGVATKEDI--------DAGMK  221 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~--~g~-----i~nri~--~~~~~Ea~~l~~~g~~~~~~i--------d~a~~  221 (297)
                      .+++++.++.+.++++.+|++++++++.  +++     +++++.  ...+.|+  ++++.+.+++++        +..++
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~~~  219 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAE--LLKKYNLPFDVMLPLIDETARKVHE  219 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            2368899999999999999999988754  345     777776  3445565  445444577777        34444


Q ss_pred             hcc-CCCccHHHHHHhhchHHHHHHHHH
Q 022407          222 LGT-NQPMGPLQLADFIGLDVCLSIMKV  248 (297)
Q Consensus       222 ~g~-g~~~Gp~~~~D~~Gl~~~~~~~~~  248 (297)
                      .+. +.+.||+...|..+++.+...++.
T Consensus       220 ~~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          220 LEPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             SCHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             cChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence            443 457899999999999998887753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.88  E-value=7.3e-23  Score=180.24  Aligned_cols=201  Identities=20%  Similarity=0.270  Sum_probs=157.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |.+ .+||+|||+|.||.++|..|+.+|+ +|++||+++++++.....+.+...            ......+++.++++
T Consensus         1 M~~-~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~   67 (317)
T 2ewd_A            1 MIE-RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDY   67 (317)
T ss_dssp             CCC-CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCG
T ss_pred             CCC-CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCH
Confidence            543 3689999999999999999999999 999999999877753222221110            00123456777788


Q ss_pred             ccccCCcEEEEec--------------ccCHHHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcCC-CCeEEEee
Q 022407           80 KDLHSADIIVEAI--------------VESEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATSR-PCQVIGMH  142 (297)
Q Consensus        80 ~~~~~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~~-~~~~~g~h  142 (297)
                      +++++||+||+++              +++..+++++++++.++++ ++++  +||++++....+++.... +.|++|+ 
T Consensus        68 ~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~-  145 (317)
T 2ewd_A           68 ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM-  145 (317)
T ss_dssp             GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES-
T ss_pred             HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec-
Confidence            7799999999999              7788889999999999976 7766  577666666677776655 5677654 


Q ss_pred             cCCCCCCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHH---HHHHHHHHH-------HHHHHcCCCC
Q 022407          143 FMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR---ILMPMINEA-------FFTLYTGVAT  212 (297)
Q Consensus       143 ~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nr---i~~~~~~Ea-------~~l~~~g~~~  212 (297)
                                       .|..+.......+.+.+|+.   .++.+||++++   .++++++++       ..++++|.++
T Consensus       146 -----------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~  205 (317)
T 2ewd_A          146 -----------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLIT  205 (317)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSC
T ss_pred             -----------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCC
Confidence                             36778888888888999987   47888999999   888999998       8999999899


Q ss_pred             HHHHHHHHhhccCCCccHHHHHHhhch
Q 022407          213 KEDIDAGMKLGTNQPMGPLQLADFIGL  239 (297)
Q Consensus       213 ~~~id~a~~~g~g~~~Gp~~~~D~~Gl  239 (297)
                      .+++|.+++.+   ++||++++|..|.
T Consensus       206 ~~~id~~~~~~---~~~~~ei~~~~g~  229 (317)
T 2ewd_A          206 QEQIDEIVCHT---RIAWKEVADNLKT  229 (317)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHH---HhhHHHHHHhhcC
Confidence            99999998854   7899999998776

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.88  E-value=3.2e-22  Score=174.32  Aligned_cols=191  Identities=17%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.||.+||.+|+++||+|++|||++++.+.+           .+.|.             +..+++.+ ++.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G~-------------~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLGA-------------TVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTTC-------------EECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eEeCCHHHHHhc
Confidence            589999999999999999999999999999999887654           33443             56677776 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCC-------cceeE
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KLVEV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vev  155 (297)
                      ||+||.|+|++..+...+...+....+++.+++ ++|+++.. .++++.+..    .|.+|++.|-..       +...+
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~i  137 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGNI  137 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCEE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHh----cCCceecCCcCCCcccccccccee
Confidence            999999999888777666677777777776655 44443333 355554421    134555544211       12345


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      +.+  ++++++++++++|+.+|++++++++.+|     .++|+++.    ..++|++.++++.+++++.+-.++..+.+.
T Consensus       138 m~g--G~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~  215 (297)
T 4gbj_A          138 CLS--GNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFA  215 (297)
T ss_dssp             EEE--ECHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTC
T ss_pred             ecc--cchhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            554  7899999999999999999999986554     36677664    467899999999889999988888766543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.87  E-value=1.2e-20  Score=163.25  Aligned_cols=151  Identities=14%  Similarity=0.221  Sum_probs=127.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||.+|+..|+++|+   +|++||+++++++.+.           +. |             +..+++..+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~-----------~~~g-------------i~~~~~~~~   59 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFK-----------EKCG-------------VHTTQDNRQ   59 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHH-----------HTTC-------------CEEESCHHH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHH-----------HHcC-------------CEEeCChHH
Confidence            689999999999999999999999   9999999999877662           22 2             245556554


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG  158 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~  158 (297)
                       +++||+||+|+|.  +....++.++.+. ++++++|+|++++++++.+.+.++.+.++++.||+.|......++ ++++
T Consensus        60 ~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence             8899999999975  4477899999988 888889999999999999999888778999999998887666554 5677


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEE
Q 022407          159 ADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      ..++++.++.++++|+.+|+.+++
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v  161 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWV  161 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEE
Confidence            888999999999999999985544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.85  E-value=9.2e-21  Score=165.88  Aligned_cols=197  Identities=18%  Similarity=0.273  Sum_probs=137.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +.+||+|||+|.||.+||..|+++|++|++||+++++++.+           .+.|..            ..++++++ +
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~~------------~~~~~~~e~~   62 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANL-----------LAEGAC------------GAAASAREFA   62 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTCS------------EEESSSTTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHcCCc------------cccCCHHHHH
Confidence            45789999999999999999999999999999999988776           334431            22566666 7


Q ss_pred             cCCcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCC-CCC--CCccee
Q 022407           83 HSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMN-PPP--LMKLVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~-p~~--~~~~ve  154 (297)
                      ++||+||+|+|++..++..++  +++.+.++++++|+..++..+.  ..+.+.+. ....++. +++. .|.  ..+.+.
T Consensus        63 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~  141 (303)
T 3g0o_A           63 GVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT  141 (303)
T ss_dssp             TTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred             hcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence            899999999998776655444  5577777788777644333222  34444442 2334444 3321 110  011223


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeEEEeccchh--h---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAG--F---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g--~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      ++.+  ++++++++++++++.+|++++++++.+|  .   ++|+++    ...++|++.++++.+++++++..++..+.+
T Consensus       142 ~~~g--g~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  219 (303)
T 3g0o_A          142 VMAS--GSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG  219 (303)
T ss_dssp             EEEE--CCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred             EEeC--CCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            3333  5789999999999999999999886333  2   445544    346899999999988999999999887654


Q ss_pred             C
Q 022407          226 Q  226 (297)
Q Consensus       226 ~  226 (297)
                      .
T Consensus       220 ~  220 (303)
T 3g0o_A          220 N  220 (303)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.85  E-value=6.1e-20  Score=156.00  Aligned_cols=190  Identities=17%  Similarity=0.226  Sum_probs=139.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      +||+|||+|.||.+|+..|+++|+    +|++||+++++++.+.+.          .|             +...++.++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YG-------------LTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HC-------------CEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hC-------------CEEeCChHH
Confidence            589999999999999999999999    999999999987765221          12             245666655


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc-ceeEecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGA  159 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vev~~~~  159 (297)
                       +++||+||+|++..  ..+.++.++.+.++++++++|.+++++.+.+.+.++.+.++++.||..|..... ...++.+.
T Consensus        60 ~~~~aDvVilav~~~--~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIKPD--LYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSCTT--THHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence             78999999999643  366788888888888999999999999998888887777899999988876554 57788888


Q ss_pred             CChHHHHHHHHHHHHHhCCeEEEeccchhh----hHH--HHHHHHHHHHHHH-HHcCCCCHHHHHHHHh
Q 022407          160 DTSDETFRATKALAERFGKTVVCSQDYAGF----IVN--RILMPMINEAFFT-LYTGVATKEDIDAGMK  221 (297)
Q Consensus       160 ~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~----i~n--ri~~~~~~Ea~~l-~~~g~~~~~~id~a~~  221 (297)
                      .++++.++.++++|+.+|+ ++++.+..-.    +..  ..+...+.|++.. ..+.+.++++...++.
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~  205 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA  205 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8999999999999999999 5555332110    010  0112334555544 4444567777666554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.85  E-value=1.1e-20  Score=164.87  Aligned_cols=191  Identities=16%  Similarity=0.213  Sum_probs=133.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+||+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|             ++.++++++ ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~   70 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL-----------AEAG-------------ATLADSVADVAA   70 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH-----------HHTT-------------CEECSSHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCC-------------CEEcCCHHHHHh
Confidence            3689999999999999999999999999999999987765           3333             356777777 66


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEeecCCCCCC--CcceeEecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNPPPL--MKLVEVIRG  158 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p~~~--~~~vev~~~  158 (297)
                       ||+||+|+|++..++ .++.++.+.++++++|+..++..+.  .++.+.+.. ..+++....+.++..  .+.+.++.+
T Consensus        71 -aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 -ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             -SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             -CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence             999999999876654 4557888888888777644433222  345544422 233433222222110  011223333


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEeccc-hhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHH------HHHHhhc
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRILM----PMINEAFFTLYTGVATKEDI------DAGMKLG  223 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~i------d~a~~~g  223 (297)
                        ++++++++++++++.+|++++++++. .+.   ++++++.    ..++|++.++++.+++++++      ..++..+
T Consensus       149 --g~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~  225 (296)
T 3qha_A          149 --ADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGG  225 (296)
T ss_dssp             --CCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCC
T ss_pred             --CCHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcC
Confidence              47899999999999999999998762 221   4555443    45899999999988999999      8887643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.84  E-value=1.4e-20  Score=163.54  Aligned_cols=193  Identities=13%  Similarity=0.163  Sum_probs=137.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.||.++|..|+++||+|++||+++++++.+           .+.|             +...+++++ +++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEEL-----------AALG-------------AERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCC-------------CeecCCHHHHHhc
Confidence            589999999999999999999999999999999987765           3333             256677776 789


Q ss_pred             CcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCccH---HHHhhhcC-CCCeEEEeecCCC-CCC--CcceeE
Q 022407           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNP-PPL--MKLVEV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p-~~~--~~~vev  155 (297)
                      ||+||+|+|++..++..++  .++.+.++++++++..+ +.++   ..+.+.+. ...+++. |++.. +..  .+.+.+
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~s-t~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  135 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMS-TVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII  135 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCC-CCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence            9999999998777665554  66778888887776443 3333   23444332 2234444 33221 110  011223


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      +.+  ++++++++++++++.+|++++++++. .+.   ++++++.    ..++|++.++++.+++++++..++..+.+.
T Consensus       136 ~~g--g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~  212 (287)
T 3pef_A          136 LAA--GDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMA  212 (287)
T ss_dssp             EEE--ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC
T ss_pred             EEe--CCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            333  57899999999999999999998762 222   4555554    378999999999889999999998876543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.84  E-value=1.9e-20  Score=164.38  Aligned_cols=196  Identities=10%  Similarity=0.137  Sum_probs=135.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .++||+|||+|.||.+||..|+++||+|++||+++++++.+           .+.|             +...+++++ +
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~~~~~~~   75 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL-----------VEHG-------------ASVCESPAEVI   75 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-----------HHTT-------------CEECSSHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCC-------------CeEcCCHHHHH
Confidence            35799999999999999999999999999999999987765           3333             246667766 7


Q ss_pred             cCCcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCcc-H-HHHhhhcC-CCCeEEEeecCC-CCCC--Cccee
Q 022407           83 HSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSIS-I-TRLASATS-RPCQVIGMHFMN-PPPL--MKLVE  154 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~-~-~~l~~~~~-~~~~~~g~h~~~-p~~~--~~~ve  154 (297)
                      ++||+||+|+|++..++..++  .++.+.++++++|+..++..+ . ..+.+.+. ...+++. +++. .+..  .+...
T Consensus        76 ~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~  154 (310)
T 3doj_A           76 KKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLI  154 (310)
T ss_dssp             HHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEE
T ss_pred             HhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeE
Confidence            899999999998777665444  556677777777764433222 2 34444332 2233433 2211 1100  01122


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hhh---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022407          155 VIRGADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      ++.+  ++++++++++++++.+|++++++++. .+.   ++++++    ...++|++.++++.+++++++..++..+.+.
T Consensus       155 i~~g--g~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~  232 (310)
T 3doj_A          155 ILAA--GDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT  232 (310)
T ss_dssp             EEEE--ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTC
T ss_pred             EEEc--CCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            3333  46899999999999999999999762 221   444444    3568999999999889999999998876543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.83  E-value=6.8e-20  Score=160.53  Aligned_cols=192  Identities=15%  Similarity=0.123  Sum_probs=134.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+||+|||+|.||.+||..|+++|++|++||+++++++.+           .+.|.             ...+++++ ++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~   64 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAAL-----------VAAGA-------------HLCESVKAALS   64 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH-----------HHHTC-------------EECSSHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCC-------------eecCCHHHHHh
Confidence            4789999999999999999999999999999999987765           23332             45666666 78


Q ss_pred             CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCCC--cceeEec
Q 022407           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI-TRLASATS-RPCQVIGMHFMNPPPLM--KLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~~--~~vev~~  157 (297)
                      +||+||+|+|++..++..+ .  .+....++..++.++|+.+.. .++.+.+. ...+++....+.+|...  +...++.
T Consensus        65 ~aDvVi~~vp~~~~~~~v~-~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~  143 (306)
T 3l6d_A           65 ASPATIFVLLDNHATHEVL-GMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIH  143 (306)
T ss_dssp             HSSEEEECCSSHHHHHHHH-TSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEE
T ss_pred             cCCEEEEEeCCHHHHHHHh-cccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEE
Confidence            9999999999877655444 4  465554434444444444433 34544432 33456655333322111  1223443


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEe--cc--chhhhHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          158 GADTSDETFRATKALAERFGKTVVCS--QD--YAGFIVNRIL---MPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~--~d--~~g~i~nri~---~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +  ++++++++++++|+.+|.+++++  ++  ..|.+++.++   ...++|++.++++.+++++++..++..+
T Consensus       144 g--g~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~  214 (306)
T 3l6d_A          144 T--GDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLET  214 (306)
T ss_dssp             E--ECHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            3  57999999999999998899999  75  4556776333   3578999999999889999988887765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.83  E-value=2.2e-20  Score=164.05  Aligned_cols=190  Identities=16%  Similarity=0.174  Sum_probs=129.1

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD--PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..++||+|||+|.||.+||..|+++|+ +|++||++  +++.+.+           .+.|.             ...+++
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~-----------~~~g~-------------~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRA-----------EELGV-------------SCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHH-----------HHTTC-------------EECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHH-----------HHCCC-------------EEeCCH
Confidence            345799999999999999999999999 99999997  4555543           33332             456676


Q ss_pred             cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-C--CCeEEEeecCCCCCC--Cc
Q 022407           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-R--PCQVIGMHFMNPPPL--MK  151 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~--~~~~~g~h~~~p~~~--~~  151 (297)
                      ++ +++||+||+|+|++...  +++.++.+.++++++|+..++..+.  ..+.+.+. +  ..+++....+.|+..  ..
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~  155 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR  155 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence            66 78999999999988754  3668888888888887755544332  23443332 1  234444323332211  13


Q ss_pred             ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhh
Q 022407          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~  222 (297)
                      +..++.+.   ++  ++++++++.+|++++++++.+|     .++++++.    .+++|++.++++.+++++.++ ++..
T Consensus       156 l~i~vgg~---~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~~  229 (312)
T 3qsg_A          156 VPLVVDGD---GA--RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLDA  229 (312)
T ss_dssp             SEEEEEST---TH--HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHH
T ss_pred             EEEEecCC---hH--HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHh
Confidence            45555553   22  8899999999999999987444     25566554    678999999999888885444 4544


Q ss_pred             cc
Q 022407          223 GT  224 (297)
Q Consensus       223 g~  224 (297)
                      +.
T Consensus       230 ~~  231 (312)
T 3qsg_A          230 SF  231 (312)
T ss_dssp             HS
T ss_pred             cC
Confidence            43

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.83  E-value=9e-19  Score=153.66  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=123.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .++||+|||+|.||.+||..|.++|+  +|++||+++++++.+           .+.|...           ...+++++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-----------~~~G~~~-----------~~~~~~~~   89 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAK   89 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCTTG
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------hhcCCHHH
Confidence            35799999999999999999999999  999999999887765           3445321           24555554


Q ss_pred             --ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCC--------
Q 022407           82 --LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPL--------  149 (297)
Q Consensus        82 --~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~--------  149 (297)
                        +++||+||+|+|.+.  ...++.++.+.++++++|++.+|.-.  .+.+.+.++  .++++.||+.++..        
T Consensus        90 ~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~  165 (314)
T 3ggo_A           90 VEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD  165 (314)
T ss_dssp             GGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred             HhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence              789999999999765  56788899999999999887665532  356666553  38999999987643        


Q ss_pred             ----CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          150 ----MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ----~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                          ...+.++++..++++.+++++++++.+|.++++++.
T Consensus       166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~  205 (314)
T 3ggo_A          166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  205 (314)
T ss_dssp             TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                235677777788999999999999999999988754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.83  E-value=2.3e-20  Score=162.16  Aligned_cols=195  Identities=14%  Similarity=0.166  Sum_probs=135.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.||.+||..|+++||+|++||+++++++.+.           +.|             +...+++++ +++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~   57 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLV-----------ALG-------------ARQASSPAEVCAA   57 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHH-----------HHT-------------CEECSCHHHHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHHc
Confidence            5799999999999999999999999999999999877652           223             246667776 789


Q ss_pred             CcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCcc-H-HHHhhhcC-CCCeEEEeecCCCCCCC--cceeEec
Q 022407           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSIS-I-TRLASATS-RPCQVIGMHFMNPPPLM--KLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~-~-~~l~~~~~-~~~~~~g~h~~~p~~~~--~~vev~~  157 (297)
                      ||+||+|+|++..++..++  .++.+.++++++++..++..+ . ..+.+.+. +..+++....+.+|...  +.+.++.
T Consensus        58 advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~  137 (287)
T 3pdu_A           58 CDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILA  137 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEE
Confidence            9999999998766665544  556677777777664333222 2 34444332 22334333222211100  1123333


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhccCC
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGTNQ  226 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~  226 (297)
                      +  ++++.+++++++++.+|++++++++ ..+.   ++++.+    ...++|++.++++.+++++++..++..+.+.
T Consensus       138 g--g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~  212 (287)
T 3pdu_A          138 A--GDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMA  212 (287)
T ss_dssp             E--ECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC
T ss_pred             e--CCHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            3  5789999999999999999999876 2232   444443    3467999999999889999999998876543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.82  E-value=2.5e-19  Score=157.84  Aligned_cols=190  Identities=16%  Similarity=0.234  Sum_probs=132.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+||+|||+|.||.+||..|+++|++|++||+++++++.+           .+.|             +..++++++ ++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~~~~e~~~   86 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASL-----------AALG-------------ATIHEQARAAAR   86 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HTTT-------------CEEESSHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HHCC-------------CEeeCCHHHHHh
Confidence            4699999999999999999999999999999999987765           3333             356677776 78


Q ss_pred             CCcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecC-CCccH-HHHhhhcCCCCeEEEeecCCCCCCCc-------ce
Q 022407           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNT-SSISI-TRLASATSRPCQVIGMHFMNPPPLMK-------LV  153 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~t-s~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~v  153 (297)
                      +||+||+|+|++..++..+.. .+.+.++++++|+..+ +.+.. ..+.+.+...    +.+|+++|-..+       .+
T Consensus        87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l  162 (320)
T 4dll_A           87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGAL----GIAHLDTPVSGGTVGAEQGTL  162 (320)
T ss_dssp             TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHT----TCEEEECCEECHHHHHHHTCE
T ss_pred             cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHc----CCEEEeCCCcCCHhHHhcCCe
Confidence            999999999987766554432 5556666666665333 33332 3444443211    233443331111       12


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN  225 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g  225 (297)
                      .++.+  ++++++++++++++.+ ++++++++ ..+.   ++++++.    .+++|++.++++.+++++++..++..+.+
T Consensus       163 ~i~~g--g~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  239 (320)
T 4dll_A          163 VIMAG--GKPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA  239 (320)
T ss_dssp             EEEEE--SCHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred             eEEeC--CCHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence            33333  5789999999999999 88888876 2332   4455443    46899999999988999999999876654

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.81  E-value=1.1e-19  Score=156.84  Aligned_cols=213  Identities=11%  Similarity=0.090  Sum_probs=141.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +||+|||+|.||..|+..|+++ ++| .+||+++++++.+.+          ..|             . ..+++++ ++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~----------~~g-------------~-~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAE----------VYG-------------G-KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHH----------HTC-------------C-CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHH----------HcC-------------C-ccCCHHHHHh
Confidence            5799999999999999999988 999 599999987766521          111             1 2345555 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeec----CCCCCCCc-ceeEecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHF----MNPPPLMK-LVEVIRG  158 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~----~~p~~~~~-~vev~~~  158 (297)
                      +||+||+|+|++.  ...++.++.   +++++|++.+++++.+.+...     ...+.|+    .++|.... ..++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            8999999999876  456666554   567777766656666655443     3445664    33332111 2222222


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEeccc--hh-----hhHHHHHHHHHHHHHHHHHcCCCC-H---------HHHHHHHh
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQDY--AG-----FIVNRILMPMINEAFFTLYTGVAT-K---------EDIDAGMK  221 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~--~g-----~i~nri~~~~~~Ea~~l~~~g~~~-~---------~~id~a~~  221 (297)
                      ..++++.++.++++++.+|++++++++.  +.     .+.++++..+++|+..+++..+.+ .         ..++.+++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~~  207 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKK  207 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence            2345667999999999999988888642  11     244556677889998888854444 4         46777777


Q ss_pred             hc-cCCCccHHHHHHhhchHHHHHHHHHHHhhc
Q 022407          222 LG-TNQPMGPLQLADFIGLDVCLSIMKVLHTGL  253 (297)
Q Consensus       222 ~g-~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~  253 (297)
                      .| .+.++||++..|..+++..+..++.+++.+
T Consensus       208 ~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          208 MRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             SCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             cChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence            77 666789999999999999999999875554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.79  E-value=6.1e-17  Score=142.32  Aligned_cols=193  Identities=12%  Similarity=0.087  Sum_probs=126.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ++++|+|||+|.||.+||..|+++| ++|++||++++..++..+..    +.+.+.|             + ..+++++ 
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~   84 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAG   84 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHH
Confidence            3478999999999999999999999 99999999973211111111    1112223             1 2314444 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCC--CCcceeEe
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP--LMKLVEVI  156 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~--~~~~vev~  156 (297)
                      +++||+||.|+|++...+  .+.++.+.++++++|++.++..+.  ..+.+.+. ...+++....+.|+.  ...+..++
T Consensus        85 ~~~aDvVi~avp~~~~~~--~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~v  162 (317)
T 4ezb_A           85 IACADVVLSLVVGAATKA--VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILV  162 (317)
T ss_dssp             GGGCSEEEECCCGGGHHH--HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEE
T ss_pred             HhcCCEEEEecCCHHHHH--HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEE
Confidence            889999999999887643  447788888888877754432222  34544442 234555543344332  12344445


Q ss_pred             cCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022407          157 RGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRIL----MPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      .+.   ++  ++++++|+.+|++++++++.+|     .++++++    ..+++|++.++++.+++++.++.+..
T Consensus       163 gg~---~~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~  231 (317)
T 4ezb_A          163 AGR---RA--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQE  231 (317)
T ss_dssp             EST---TH--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             eCC---hH--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            442   23  8899999999999999987444     2555544    46789999999998888866665544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.79  E-value=2.4e-18  Score=153.19  Aligned_cols=192  Identities=13%  Similarity=0.136  Sum_probs=136.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..||..|+++|++|++||+++++++.+           .+.|.             ...+++++ ++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQAL-----------EREGI-------------AGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HTTTC-------------BCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHCCC-------------EEeCCHHHHHh
Confidence            3699999999999999999999999999999999987765           33332             34566665 66


Q ss_pred             CC---cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhc-CCCCeEEEeecCCCCCCC-cceeEe
Q 022407           84 SA---DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASAT-SRPCQVIGMHFMNPPPLM-KLVEVI  156 (297)
Q Consensus        84 ~a---D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~-~~~~~~~g~h~~~p~~~~-~~vev~  156 (297)
                      ++   |+||.|+|.+ . ...++.++.+.++++++|++.+++.+.  ..+++.+ .+..+++....+.++... ....++
T Consensus        78 ~a~~~DvVi~~vp~~-~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im  155 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA-V-VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLM  155 (358)
T ss_dssp             HSCSSCEEEECSCGG-G-HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEE
T ss_pred             cCCCCCEEEEeCCHH-H-HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeee
Confidence            77   9999999988 4 456778888888888888766555443  3444444 233445554332222100 011455


Q ss_pred             cCCCChHHHHHHHHHHHHHhC--------------------CeEEEecc-chhh---hHHHHH----HHHHHHHHHHHHc
Q 022407          157 RGADTSDETFRATKALAERFG--------------------KTVVCSQD-YAGF---IVNRIL----MPMINEAFFTLYT  208 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG--------------------~~~v~~~d-~~g~---i~nri~----~~~~~Ea~~l~~~  208 (297)
                      .+  ++++++++++++|+.+|                    +.++++++ ..|.   ++++.+    ...++|++.++++
T Consensus       156 ~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~  233 (358)
T 4e21_A          156 IG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHH  233 (358)
T ss_dssp             EE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54  68999999999999999                    56778875 3443   444433    3567999999998


Q ss_pred             C------------------------CCCHHHHHHHHhhcc
Q 022407          209 G------------------------VATKEDIDAGMKLGT  224 (297)
Q Consensus       209 g------------------------~~~~~~id~a~~~g~  224 (297)
                      .                        ..+.++|-.+++.|.
T Consensus       234 a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~  273 (358)
T 4e21_A          234 ANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGS  273 (358)
T ss_dssp             TTCC--------------CGGGCCCCCCHHHHHHHHTTTS
T ss_pred             cccccccccccccccccccchhcccCCCHHHHHHHHhCcc
Confidence            6                        578888888887654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.78  E-value=1.2e-18  Score=144.73  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=127.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |....+||+|||+|.||.+||..|.++|++|++||+.                                          +
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~   39 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------E   39 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------G
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------H
Confidence            5556689999999999999999999999999999972                                          1


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~  160 (297)
                      ++++||  |.|+|.+.  ...++.++.+.+++++++++.+++.+.+.+......+.++++.||+...     ..++..  
T Consensus        40 ~~~~aD--ilavP~~a--i~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a--  108 (232)
T 3dfu_A           40 DIRDFE--LVVIDAHG--VEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASA--  108 (232)
T ss_dssp             GGGGCS--EEEECSSC--HHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEE--
T ss_pred             HhccCC--EEEEcHHH--HHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeC--
Confidence            245688  88999873  4677788888888999988766666555444444456789999987432     223322  


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEecc--chhh----hHHHHHHHHHHHHHHHH---HcCCCCHHH
Q 022407          161 TSDETFRATKALAERFGKTVVCSQD--YAGF----IVNRILMPMINEAFFTL---YTGVATKED  215 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~d--~~g~----i~nri~~~~~~Ea~~l~---~~g~~~~~~  215 (297)
                      .+++.++.++++++.+|.+++++.+  .+.+    ...+.+.+++++|.+++   ++|+++++|
T Consensus       109 ~d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d  172 (232)
T 3dfu_A          109 LDELGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD  172 (232)
T ss_dssp             SSHHHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence            3788999999999999999998854  4555    66888899999999999   889989998

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.78  E-value=2.6e-17  Score=151.19  Aligned_cols=207  Identities=14%  Similarity=0.159  Sum_probs=138.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CC-cEEEEeCCHH----HHHHHHHHH------HHHHHHHHHcCCCChhhhcccCC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTDPD----ALVRATKSI------SSSIQKFVSKGQLSQAMGTDAPR   71 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~   71 (297)
                      .++||+|||+|.||.++|..|+++ || +|++||++++    +++.+.+..      +..++.++++        .....
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            468999999999999999999999 99 9999999999    887763210      0011111110        00135


Q ss_pred             ceEEecCcccccCCcEEEEecccCH----------HHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhh-----hcC
Q 022407           72 RLRCTSNLKDLHSADIIVEAIVESE----------DVKKKLFSELDKITKASAILASNTSSISI---TRLAS-----ATS  133 (297)
Q Consensus        72 ~i~~~~~~~~~~~aD~Vi~~v~e~~----------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-----~~~  133 (297)
                      +++++++.+.+++||+||+|||++.          .......+.+.+.++++++++ +.||+++   ++++.     ..+
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence            6788888666999999999999863          223455667888888888766 3445554   23332     122


Q ss_pred             C--CCeEEEeec-CCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHh-CCeEEEeccch-h---hhHHHHH-
Q 022407          134 R--PCQVIGMHF-MNPPPLMKL---------VEVIRGADTSDETFRATKALAERF-GKTVVCSQDYA-G---FIVNRIL-  195 (297)
Q Consensus       134 ~--~~~~~g~h~-~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~l-G~~~v~~~d~~-g---~i~nri~-  195 (297)
                      .  ...+   ++ ++|....+.         ..|+.|  .+++.+++++++++.+ ++.++++++.. +   .++|+++ 
T Consensus       168 ~~~~~d~---~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~  242 (478)
T 3g79_A          168 LKAGEDF---ALAHAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR  242 (478)
T ss_dssp             CCBTTTB---EEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCcCCce---eEEeCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence            1  1111   11 234332221         146655  6788889999999999 88888876642 2   3566655 


Q ss_pred             ---HHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          196 ---MPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       196 ---~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                         .+++||++.++++-+++++++-.++....
T Consensus       243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          243 DLQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence               36789999999998899999877776443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.78  E-value=7.1e-18  Score=146.28  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=117.1

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|+|||+ |.||..+|..|+++|++|++||+++++++.+           .+.|.             ...+..+.+
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~~~   65 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRL-----------QGMGI-------------PLTDGDGWI   65 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHH-----------HHTTC-------------CCCCSSGGG
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HhcCC-------------CcCCHHHHh
Confidence            3479999999 9999999999999999999999999877665           22231             122223347


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--------CCcc--
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--------LMKL--  152 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--------~~~~--  152 (297)
                      ++||+||+|+|.+.  ...++.++.+.++++++|++.+++.+.+.+.+ .....++++.||+.|+.        ....  
T Consensus        66 ~~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l  142 (286)
T 3c24_A           66 DEADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYH  142 (286)
T ss_dssp             GTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred             cCCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCcc
Confidence            89999999998765  56788888888888999988777776666654 33346899999988765        2121  


Q ss_pred             ------eeEecCCCChHHHHHHHHHHHHHhCC---eEEEecc
Q 022407          153 ------VEVIRGADTSDETFRATKALAERFGK---TVVCSQD  185 (297)
Q Consensus       153 ------vev~~~~~~~~~~~~~~~~l~~~lG~---~~v~~~d  185 (297)
                            ..++.+..++++.++.+.++++.+|.   +++++++
T Consensus       143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~  184 (286)
T 3c24_A          143 GGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTT  184 (286)
T ss_dssp             SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCH
T ss_pred             cccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeCh
Confidence                  22333344788999999999999999   7888754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.78  E-value=1e-17  Score=147.69  Aligned_cols=154  Identities=18%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ++||+|||+|.||.+||..|+++|    ++|++||++++  +++.+           .+.|             +..+++
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l-----------~~~G-------------~~~~~~   77 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSAL-----------RKMG-------------VKLTPH   77 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHH-----------HHHT-------------CEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHH-----------HHcC-------------CEEeCC
Confidence            468999999999999999999999    89999999986  55554           1223             245555


Q ss_pred             ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCC---CCeEEEeecCCCCCCCccee
Q 022407           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR---PCQVIGMHFMNPPPLMKLVE  154 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~---~~~~~g~h~~~p~~~~~~ve  154 (297)
                      ..+ +++||+||.|+|..  ...+++.++.+.++++++|++.+++++.+.+.+.+..   ..++++.++..|........
T Consensus        78 ~~e~~~~aDvVilav~~~--~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~  155 (322)
T 2izz_A           78 NKETVQHSDVLFLAVKPH--IIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT  155 (322)
T ss_dssp             HHHHHHHCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred             hHHHhccCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence            554 78999999999843  3567788888888888999888888888766655532   35788899887765444334


Q ss_pred             E-ecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          155 V-IRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       155 v-~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      + +.+..++++.++.++++|+.+|..+++..
T Consensus       156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e  186 (322)
T 2izz_A          156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEE  186 (322)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHTTEEEEECCG
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence            4 45666678999999999999998766543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.77  E-value=1.6e-17  Score=153.43  Aligned_cols=205  Identities=16%  Similarity=0.212  Sum_probs=140.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+||+|||+|.||.++|..|+++||+|++||+++++++.+.+...    ..++.++.        ......+++++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~--------~~~~~~~l~~ttd~~   79 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIA--------RNRSAGRLRFSTDIE   79 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHH--------HHHHTTCEEEECCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHH--------HhcccCCEEEECCHH
Confidence            479999999999999999999999999999999998887633100    00000000        000124578888886


Q ss_pred             c-ccCCcEEEEecccC--------HHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcC----CC---CeEEEe
Q 022407           81 D-LHSADIIVEAIVES--------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATS----RP---CQVIGM  141 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~----~~---~~~~g~  141 (297)
                      + +++||+||+|||++        ....+.+++.+.++++++++|+. .|++++   +.+.+.+.    .+   ..+  .
T Consensus        80 ~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~  156 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF--S  156 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE--E
T ss_pred             HHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE--E
Confidence            5 88999999999984        36678888999999998888763 446544   22322221    11   222  2


Q ss_pred             ecCCCCCCCcce---------eEecCCCChH----HHHHHHHHHHHHhCC--eEEEeccc-----hhhhHHHHH---HHH
Q 022407          142 HFMNPPPLMKLV---------EVIRGADTSD----ETFRATKALAERFGK--TVVCSQDY-----AGFIVNRIL---MPM  198 (297)
Q Consensus       142 h~~~p~~~~~~v---------ev~~~~~~~~----~~~~~~~~l~~~lG~--~~v~~~d~-----~g~i~nri~---~~~  198 (297)
                      ..++|....+..         .++.|. .++    +..+.+.++++.+++  .++++.+.     ..++.|.++   .++
T Consensus       157 v~~~Pe~~~eG~~~~~~~~p~~iviG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~  235 (478)
T 2y0c_A          157 VVSNPEFLKEGAAVDDFTRPDRIVIGC-DDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISF  235 (478)
T ss_dssp             EEECCCCCCTTCHHHHHHSCSCEEEEC-CSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEChhhhcccceeeccCCCCEEEEEE-CCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344565444332         455553 234    788999999998775  56777653     235666665   568


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHh
Q 022407          199 INEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +||+..+++..+++++++..++.
T Consensus       236 ~nE~~~la~~~Gid~~~v~~~i~  258 (478)
T 2y0c_A          236 MNELANLADRFGADIEAVRRGIG  258 (478)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHh
Confidence            99999999999899999887764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=150.72  Aligned_cols=193  Identities=17%  Similarity=0.204  Sum_probs=135.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++|+|||+|.||..+|..|+++|++|++||+++++++.+           .+.|.             ...++.++ ++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~   85 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLF-----------IQEGA-------------RLGRTPAEVVS   85 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHH-----------HHTTC-------------EECSCHHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHcCC-------------EEcCCHHHHHh
Confidence            4789999999999999999999999999999999877654           22232             34555555 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHH--HHhhccCCeEEeecCCCcc--HHHHhhhcC-CCCeEEEeecCCCCC---CCcceeE
Q 022407           84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILASNTSSIS--ITRLASATS-RPCQVIGMHFMNPPP---LMKLVEV  155 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~~~~g~h~~~p~~---~~~~vev  155 (297)
                      ++|+||+|+|++..++..+...  +.+.++++++|++.++..+  ..++.+.+. .+.++++.++++.+.   ...+..+
T Consensus        86 ~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~  165 (316)
T 2uyy_A           86 TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVIL  165 (316)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred             cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEE
Confidence            8999999999776655433321  2355666776664433322  345665552 356788776554331   1223444


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh----hhHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDY-AG----FIVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g----~i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +.+   +++.++.+.++|+.+|..++++++. .+    ++.|.+   +..+++|++.++++.++++++++.++..+.
T Consensus       166 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~  239 (316)
T 2uyy_A          166 AAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQ  239 (316)
T ss_dssp             EEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             eCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            444   5789999999999999999888662 22    345554   356789999999888889999988877653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.77  E-value=7.2e-18  Score=147.23  Aligned_cols=195  Identities=18%  Similarity=0.228  Sum_probs=134.7

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |.+ .+||+|||+|.||..+|..|+++|++|++||+++++.+.+           .+.|             +...++++
T Consensus         1 M~~-~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~   55 (301)
T 3cky_A            1 MEK-SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAV-----------VAQG-------------AQACENNQ   55 (301)
T ss_dssp             ----CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HTTT-------------CEECSSHH
T ss_pred             CCC-CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHCC-------------CeecCCHH
Confidence            543 4699999999999999999999999999999999877665           2222             24555665


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecCCCCCC---Cc
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPPL---MK  151 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~~---~~  151 (297)
                      + ++++|+||.|+|.+.+++..+.  .++.+.++++++|++.+++.+  .+.+.+.+.. ..+++.. +..+...   .+
T Consensus        56 ~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g  134 (301)
T 3cky_A           56 KVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAG  134 (301)
T ss_dssp             HHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHT
T ss_pred             HHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcC
Confidence            5 7889999999998776655444  267777888888887777663  3556655432 2344432 1111100   01


Q ss_pred             ceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh----hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF----IVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~----i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+.++.+  ++++.++.+.++|+.+|..++++++ ..+.    +.|.+   +...++|++.++++.+++++++...+..+
T Consensus       135 ~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~  212 (301)
T 3cky_A          135 TLTIMVG--ASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKS  212 (301)
T ss_dssp             CEEEEEE--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             CeEEEEC--CCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            1233333  3788999999999999999887765 3343    34444   34578999999988788998888877644

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.76  E-value=1.3e-17  Score=145.57  Aligned_cols=193  Identities=18%  Similarity=0.294  Sum_probs=134.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|+++|++|++||+++++.+.+           .+.|             +...+++++ +++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-----------IAAG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-----------HHCC-------------CeecCCHHHHHhC
Confidence            589999999999999999999999999999999887665           2223             245566655 788


Q ss_pred             CcEEEEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEeecCC-CCC-CCcceeEec
Q 022407           85 ADIIVEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMN-PPP-LMKLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~-p~~-~~~~vev~~  157 (297)
                      +|+||+|+|++.+++..++  .++.+.++++++|++.+++.+.  +.+.+.+.. ...++....+. ++. ..+.+.++.
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999997766554443  4677778888888766555442  456655532 23333321111 110 011234444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      +  ++++.++.+.++|+.+|..++++++ ..+.   ++++.+.    ..++|++.++++.++++++++.++..+.
T Consensus       142 ~--~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  214 (299)
T 1vpd_A          142 G--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGL  214 (299)
T ss_dssp             E--SCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             C--CCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Confidence            4  4788999999999999999988865 3443   3344443    5789999999888889999888876544

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.75  E-value=5.2e-17  Score=147.11  Aligned_cols=198  Identities=15%  Similarity=0.194  Sum_probs=132.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .++||+|||+|.||.++|..|++ |++|++||+++++++.+.+..    +..++.+++.+          ..++++++|+
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~----------~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK----------PLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc----------cCCeEEEcCH
Confidence            35799999999999999999998 999999999999988764321    01122222111          2357888887


Q ss_pred             cc-ccCCcEEEEecccCH---------HHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCC
Q 022407           80 KD-LHSADIIVEAIVESE---------DVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNP  146 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~---------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p  146 (297)
                      ++ +++||+||+|+|++.         .....+.+.+.+ ++++++++ ..|++++   +++.+.+..  .  ++.| +|
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~~-sP  176 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVIF-SP  176 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEEE-CC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEee-cC
Confidence            65 899999999999873         234556677777 67777665 3444443   456665542  1  2222 55


Q ss_pred             CCCCcc------e---eEecCCCChHHHHHHHHHHHHH--hCC-eEEEeccc-hh---hhHHHHH----HHHHHHHHHHH
Q 022407          147 PPLMKL------V---EVIRGADTSDETFRATKALAER--FGK-TVVCSQDY-AG---FIVNRIL----MPMINEAFFTL  206 (297)
Q Consensus       147 ~~~~~~------v---ev~~~~~~~~~~~~~~~~l~~~--lG~-~~v~~~d~-~g---~i~nri~----~~~~~Ea~~l~  206 (297)
                      ....+.      .   .|+.|  ++++..+++.++|..  ++. .++++.+. .+   .++++.+    .+++||++.++
T Consensus       177 e~~~~G~A~~~~l~p~rIvvG--~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la  254 (432)
T 3pid_A          177 EFLREGRALYDNLHPSRIVIG--ERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA  254 (432)
T ss_dssp             CCCCTTSHHHHHHSCSCEEES--SCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhcccCCceEEec--CCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443321      2   45666  456678888999987  453 34554442 22   2555554    36789999999


Q ss_pred             HcCCCCHHHHHHHHh
Q 022407          207 YTGVATKEDIDAGMK  221 (297)
Q Consensus       207 ~~g~~~~~~id~a~~  221 (297)
                      +.-+++++++-.++.
T Consensus       255 e~~GiD~~~v~~~~~  269 (432)
T 3pid_A          255 ESQGLNSKQIIEGVC  269 (432)
T ss_dssp             HHTTCCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHc
Confidence            998899998877774

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.75  E-value=7.9e-17  Score=147.76  Aligned_cols=201  Identities=19%  Similarity=0.178  Sum_probs=136.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+..        ...+.+..            ...++++++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~------------~~~~l~~t~   70 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNV------------KAGRLRFGT   70 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHH------------HTTSEEEES
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhc------------ccCcEEEEC
Confidence            6999999999999999999999999999999999888764311        00011001            134578888


Q ss_pred             Cccc-ccCCcEEEEecccCHH--------HHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcC-----C--CCeE
Q 022407           78 NLKD-LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLASATS-----R--PCQV  138 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-----~--~~~~  138 (297)
                      ++++ +++||+||.|+|++..        ....+++.+.+.++++++|+..| ++++   +++.+.+.     .  ...+
T Consensus        71 d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~  149 (450)
T 3gg2_A           71 EIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDF  149 (450)
T ss_dssp             CHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             CHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcce
Confidence            8887 8999999999988742        46677888999998888776433 4443   23333221     0  0111


Q ss_pred             -EEeecCCCCCCCcce---------eEecCCCChHHHHHHHHHHHHHhCC--eEEEeccchh----hhHHHHH----HHH
Q 022407          139 -IGMHFMNPPPLMKLV---------EVIRGADTSDETFRATKALAERFGK--TVVCSQDYAG----FIVNRIL----MPM  198 (297)
Q Consensus       139 -~g~h~~~p~~~~~~v---------ev~~~~~~~~~~~~~~~~l~~~lG~--~~v~~~d~~g----~i~nri~----~~~  198 (297)
                       +.   ++|....+..         .++.|. .++++.+.++++++.+++  .++++.+..+    .++++.+    .++
T Consensus       150 ~v~---~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~  225 (450)
T 3gg2_A          150 DIA---SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISF  225 (450)
T ss_dssp             EEE---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEE---echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence             11   2343332211         244441 468999999999999987  3566666432    2444443    467


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          199 INEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       199 ~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      +||+..++++.+++++++-.++..+
T Consensus       226 ~nE~~~l~~~~Gid~~~v~~~~~~~  250 (450)
T 3gg2_A          226 MNDVANLCERVGADVSMVRLGIGSD  250 (450)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHcCC
Confidence            8999999999889999988887644

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.75  E-value=4.4e-18  Score=156.86  Aligned_cols=110  Identities=25%  Similarity=0.245  Sum_probs=100.1

Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHhhccCCCc---cHHHHHHh
Q 022407          161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVAT-KEDIDAGMKLGTNQPM---GPLQLADF  236 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~-~~~id~a~~~g~g~~~---Gp~~~~D~  236 (297)
                      +++++.+.+..+...+|+.+..+  .+|+++||++.+++|||++++++|+++ ++|||.+|+.|+|||+   |||+++|.
T Consensus       332 ~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D~  409 (463)
T 1zcj_A          332 PDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAAS  409 (463)
T ss_dssp             ECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHHH
Confidence            57888888888877788765543  379999999999999999999999994 9999999999999998   99999999


Q ss_pred             hchHHHHHHHHHHHhhcCC-CCCCCcHHHHHHHHcCC
Q 022407          237 IGLDVCLSIMKVLHTGLGD-SKYAPCPLLVQYVDAGR  272 (297)
Q Consensus       237 ~Gl~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~  272 (297)
                      +|++.++.+++.+++.+++ ++|+|+++|++|+++|+
T Consensus       410 ~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~  446 (463)
T 1zcj_A          410 VGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  446 (463)
T ss_dssp             HCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             hCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence            9999999999999999998 68999999999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.75  E-value=8.3e-18  Score=153.57  Aligned_cols=201  Identities=14%  Similarity=0.151  Sum_probs=134.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      -+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.        +...+.+.+            ...++++++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~------------~~g~l~~tt   76 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNV------------KAGRLSFTT   76 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhc------------ccCCEEEEC
Confidence            489999999999999999999999999999999998876331        001111101            135578899


Q ss_pred             Cccc-ccCCcEEEEecccCHH---------HHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhc----CCCCeEEE
Q 022407           78 NLKD-LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILASNTSSISI---TRLASAT----SRPCQVIG  140 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~----~~~~~~~g  140 (297)
                      |+++ +++||+||.|||++..         ..+.+.+.+.+.++++++++.. |++++   +++.+.+    ....-.+.
T Consensus        77 d~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~~~d~~v~  155 (446)
T 4a7p_A           77 DLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAPNSGAKVV  155 (446)
T ss_dssp             CHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHSTTSCCEEE
T ss_pred             CHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCCCCCceEE
Confidence            9865 8999999999987652         3566778888888888877643 35554   2333322    11111111


Q ss_pred             eecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCe---EEEeccchh----hhHHHHH----HHHHH
Q 022407          141 MHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKT---VVCSQDYAG----FIVNRIL----MPMIN  200 (297)
Q Consensus       141 ~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~---~v~~~d~~g----~i~nri~----~~~~~  200 (297)
                         ++|....+.         ..++.| ..++++.+.++++++.+++.   ++++.+..+    .++++.+    .+++|
T Consensus       156 ---~~Pe~a~eG~a~~d~~~p~~ivvG-~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~n  231 (446)
T 4a7p_A          156 ---SNPEFLREGAAIEDFKRPDRVVVG-TEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFIN  231 (446)
T ss_dssp             ---ECCCCCCTTSHHHHHHSCSCEEEE-CSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---eCcccccccchhhhccCCCEEEEe-CCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               133322221         134444 24588999999999998875   567766422    2555554    36789


Q ss_pred             HHHHHHHcCCCCHHHHHHHHhhc
Q 022407          201 EAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      |+..++++-+++++++-.++..+
T Consensus       232 E~~~l~~~~GiD~~~v~~~~~~~  254 (446)
T 4a7p_A          232 EIADLCEQVGADVQEVSRGIGMD  254 (446)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcC
Confidence            99999999889999988777543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.74  E-value=2.9e-18  Score=149.42  Aligned_cols=188  Identities=23%  Similarity=0.273  Sum_probs=131.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||+|||+|.||..+|..|+++|++|++||+++++++.+           .+.|             ++..+++++ +++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~   56 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEF-----------QDAG-------------EQVVSSPADVAEK   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HTTT-------------CEECSSHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcC-------------CeecCCHHHHHhc
Confidence            379999999999999999999999999999999887665           2223             245566665 788


Q ss_pred             CcEEEEecccCHHHHHHHHHH---HHhhccCCeEEeecCCCccHHH---HhhhcCCCCeEEEeecCCCCCCC-------c
Q 022407           85 ADIIVEAIVESEDVKKKLFSE---LDKITKASAILASNTSSISITR---LASATSRPCQVIGMHFMNPPPLM-------K  151 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~ii~s~ts~~~~~~---l~~~~~~~~~~~g~h~~~p~~~~-------~  151 (297)
                      +|+||.|+|.+..++. ++.+   +.+.+++++++++ ++++++..   +.+.+...    +.+|.+.|...       +
T Consensus        57 ~Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~  130 (296)
T 2gf2_A           57 ADRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSG  130 (296)
T ss_dssp             CSEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHT
T ss_pred             CCEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcC
Confidence            9999999987766544 4443   3345677888887 77777643   32333211    22333333111       1


Q ss_pred             ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hhh---hHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AGF---IVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g~---i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      ...++.+  ++++.++.++++|+.+|..++++++. .+.   ++++.+.    .+++|++.++++.++++++++.++..+
T Consensus       131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~  208 (296)
T 2gf2_A          131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMS  208 (296)
T ss_dssp             CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred             cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            2345544  56889999999999999998887652 222   4555553    578999999988888999999888765


Q ss_pred             cC
Q 022407          224 TN  225 (297)
Q Consensus       224 ~g  225 (297)
                      .|
T Consensus       209 ~~  210 (296)
T 2gf2_A          209 SG  210 (296)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.74  E-value=4.8e-16  Score=141.00  Aligned_cols=196  Identities=14%  Similarity=0.180  Sum_probs=132.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      .|..|||+|.||.++|.+|+++||+|++||+++++++.+.+.        +...+.+.+.            ..++++++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~------------~g~l~~tt   79 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLS------------SGKLKVST   79 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcc------------cCceEEeC
Confidence            589999999999999999999999999999999999886431        1111111111            24567777


Q ss_pred             CcccccCCcEEEEecccCHH----------HHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhc-C-CC----CeE
Q 022407           78 NLKDLHSADIIVEAIVESED----------VKKKLFSELDKITKASAILASNTSSISI---TRLASAT-S-RP----CQV  138 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~~----------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~-~-~~----~~~  138 (297)
                      ++   ++||+||.|||++..          ......+.+.+.++++++++ ..||+++   +++...+ . .+    ..+
T Consensus        80 d~---~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~  155 (431)
T 3ojo_A           80 TP---EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDI  155 (431)
T ss_dssp             SC---CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred             ch---hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence            63   579999999998762          23445567888888888766 3345544   2333221 1 11    111


Q ss_pred             EEeecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHH----HHHHHH
Q 022407          139 IGMHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRIL----MPMINE  201 (297)
Q Consensus       139 ~g~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~----~~~~~E  201 (297)
                      .-.  ++|....+.         ..|+.|  .++++.++++++++.+++.++++++. .+   .++|+++    .+++||
T Consensus       156 ~v~--~~Pe~~~~G~A~~~~~~p~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE  231 (431)
T 3ojo_A          156 YLV--HCPERVLPGKILEELVHNNRIIGG--VTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANE  231 (431)
T ss_dssp             EEE--ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE--ECCCcCCCcchhhcccCCCEEEEe--CCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  234333221         146665  47899999999999999888777653 22   3666665    367999


Q ss_pred             HHHHHHcCCCCHHHHHHHHh
Q 022407          202 AFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       202 a~~l~~~g~~~~~~id~a~~  221 (297)
                      ++.++++.+++++++-.++.
T Consensus       232 ~~~l~e~~GiD~~~v~~~~~  251 (431)
T 3ojo_A          232 LTKICNNLNINVLDVIEMAN  251 (431)
T ss_dssp             HHHHHHHTTCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCHHHHHHHHc
Confidence            99999998899988877765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.74  E-value=6.5e-17  Score=142.81  Aligned_cols=155  Identities=15%  Similarity=0.140  Sum_probs=114.0

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..+++|+|||+|.||.+||..|.++|++|++||++++.++.+           .+.|.             ...+++++ 
T Consensus         6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-----------~~~G~-------------~~~~~~~e~   61 (341)
T 3ktd_A            6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-----------VDEGF-------------DVSADLEAT   61 (341)
T ss_dssp             CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-----------HHTTC-------------CEESCHHHH
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eeeCCHHHH
Confidence            346799999999999999999999999999999999887765           33443             23455554 


Q ss_pred             cc----CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCCc----
Q 022407           82 LH----SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLMK----  151 (297)
Q Consensus        82 ~~----~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~~----  151 (297)
                      ++    +||+||.|+|.  .....++.++.++ +++++|+..+|.-  ..+.+.+.+. ..++++.||+..+...+    
T Consensus        62 ~~~a~~~aDlVilavP~--~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa  137 (341)
T 3ktd_A           62 LQRAAAEDALIVLAVPM--TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSAS  137 (341)
T ss_dssp             HHHHHHTTCEEEECSCH--HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGC
T ss_pred             HHhcccCCCEEEEeCCH--HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhh
Confidence            43    47999999994  3466788888886 6777776443332  2245555443 46899999988764221    


Q ss_pred             --------ceeEecCCCChHH--------HHHHHHHHHHHhCCeEEEecc
Q 022407          152 --------LVEVIRGADTSDE--------TFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       152 --------~vev~~~~~~~~~--------~~~~~~~l~~~lG~~~v~~~d  185 (297)
                              .+.++++..++++        .+++++++++.+|.+++++..
T Consensus       138 ~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~  187 (341)
T 3ktd_A          138 MDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRV  187 (341)
T ss_dssp             CSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             hhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCH
Confidence                    2446666667777        899999999999999988853

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.74  E-value=1.8e-16  Score=135.65  Aligned_cols=149  Identities=17%  Similarity=0.267  Sum_probs=112.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +||+|||+|.||..+|..|+++| ++|++||+++++++.+.+.          .|             +...++.++ + 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            48999999999999999999999 9999999999887765211          13             245555555 7 


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC-cceeEecCCCCh
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-KLVEVIRGADTS  162 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-~~vev~~~~~~~  162 (297)
                      ++|+||+|+| +.. ...++.++.+  + +++|++.+++++++.+.+.++.+.+++...+..|.... +...++.+..++
T Consensus        57 ~~D~vi~~v~-~~~-~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK-PQD-MEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC-HHH-HHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC-chh-HHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999 333 4556665544  4 78888888999988888877655577777444344332 245667776668


Q ss_pred             HHHHHHHHHHHHHhCCeEEEec
Q 022407          163 DETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ++.++.+.++++.+|..+ +++
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~  152 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLD  152 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECS
T ss_pred             HHHHHHHHHHHHhCCCEE-EeC
Confidence            999999999999999876 665

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.73  E-value=1.8e-17  Score=152.40  Aligned_cols=195  Identities=14%  Similarity=0.159  Sum_probs=133.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .+++|+|||+|.||.+||..|+++||+|++||+++++++.+           .+.+..        ..++..++++++ +
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDF-----------LANEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HHTTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HhcccC--------CCceeccCCHHHHH
Confidence            34689999999999999999999999999999999988776           333211        113445666665 3


Q ss_pred             c---CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCCC-CcceeE
Q 022407           83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEV  155 (297)
Q Consensus        83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vev  155 (297)
                      +   ++|+||.|||.+..+. .++.++.+.++++.+|+..+++.+.  ..+.+.+. ...++++......+.. .....+
T Consensus        64 ~~l~~aDvVil~Vp~~~~v~-~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~i  142 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAVD-DFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSL  142 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEE
T ss_pred             hhccCCCEEEEecCChHHHH-HHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCee
Confidence            3   6999999999876544 5668888888888887765555543  34443332 2344555422221110 001135


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeE-------EEeccc-hhh---hHHHHH----HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022407          156 IRGADTSDETFRATKALAERFGKTV-------VCSQDY-AGF---IVNRIL----MPMINEAFFTLYT-GVATKEDIDAG  219 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~-------v~~~d~-~g~---i~nri~----~~~~~Ea~~l~~~-g~~~~~~id~a  219 (297)
                      +.+  ++++++++++++|+.+|.++       +++++. .|.   ++++.+    ...++|++.++++ .+++++++..+
T Consensus       143 m~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v  220 (484)
T 4gwg_A          143 MPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQA  220 (484)
T ss_dssp             EEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             ecC--CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            554  57899999999999999987       677652 332   445443    3578999999998 77898888776


Q ss_pred             H
Q 022407          220 M  220 (297)
Q Consensus       220 ~  220 (297)
                      +
T Consensus       221 ~  221 (484)
T 4gwg_A          221 F  221 (484)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.73  E-value=2.4e-16  Score=138.15  Aligned_cols=195  Identities=14%  Similarity=0.139  Sum_probs=128.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc---
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD---   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---   81 (297)
                      ++||+|||+|.||..+|..|+++|++|++||+++++++.+.           +.|............++..+++.+.   
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIR-----------KNGLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HHCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH-----------hCCEEEEeCCCeeEecceeecchhhccc
Confidence            36899999999999999999999999999999998876652           2231100000000112223332222   


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecCCCCCCC---------
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMNPPPLM---------  150 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~p~~~~---------  150 (297)
                      ++++|+||.|+|.+.  ...++.++.+.++++++|++.+++++. +.+.+.++. .+++ +.+++.++...         
T Consensus        72 ~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTKAQQ--LDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSCHHH--HHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEecccc--HHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecC
Confidence            348999999998653  567888899888889988888888876 556666543 3566 44443332111         


Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHH------------------------HHHHHHHHH
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVN------------------------RILMPMINE  201 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~n------------------------ri~~~~~~E  201 (297)
                      +.+.+....+++++..+.+.++|+.+|..+++.+|..+     ++.|                        .++...+.|
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E  228 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISE  228 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHH
Confidence            12334444557889999999999999998888776422     1222                        334566778


Q ss_pred             HHHHHHcCCCCH
Q 022407          202 AFFTLYTGVATK  213 (297)
Q Consensus       202 a~~l~~~g~~~~  213 (297)
                      +..+++.-++++
T Consensus       229 ~~~la~~~G~~~  240 (316)
T 2ew2_A          229 FAAVAEKEAIYL  240 (316)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHcCCCC
Confidence            888877654553

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.73  E-value=1.4e-17  Score=144.94  Aligned_cols=189  Identities=19%  Similarity=0.250  Sum_probs=130.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++||+|||+|.||..+|..|+++|++|++|| ++++++.+           .+.|.             ...+++++ ++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADEL-----------LSLGA-------------VNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHH-----------HTTTC-------------BCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHH-----------HHcCC-------------cccCCHHHHHh
Confidence            3689999999999999999999999999999 88776654           22231             23455655 78


Q ss_pred             CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCCCc-------c
Q 022407           84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLMK-------L  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~~-------~  152 (297)
                      ++|+||.|+|.+.+++..+..  ++.+.++++++|++.+++.+  .+++.+.+...    +.||++.|...+       .
T Consensus        58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~  133 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT  133 (295)
T ss_dssp             TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred             cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence            999999999987765543332  56667778888876655533  34566555321    334444332111       1


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                      ..++.+  ++++.++++.++|+.+|.+++++++ ..+.   ++++.+    ...++|++.++++.+++++++...+..+.
T Consensus       134 ~~~~~~--~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~  211 (295)
T 1yb4_A          134 LSIMVG--GEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGF  211 (295)
T ss_dssp             EEEEEE--SCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSS
T ss_pred             eEEEEC--CCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            223333  3788999999999999999888865 3332   333333    35789999999988889999888876544

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.6e-17  Score=154.01  Aligned_cols=194  Identities=14%  Similarity=0.156  Sum_probs=133.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      .+|+|||+|.||.+||..|+++||+|++||+++++++.+.+.          ...         ...+..++++++ +++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~~---------~~gi~~~~s~~e~v~~   71 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN----------EAK---------GKSIIGATSIEDFISK   71 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT----------TTT---------TSSEECCSSHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc----------ccc---------CCCeEEeCCHHHHHhc
Confidence            589999999999999999999999999999999988776210          100         012455667765 555


Q ss_pred             ---CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCCC-CcceeEec
Q 022407           85 ---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        85 ---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vev~~  157 (297)
                         ||+||.|||.+..++ .++.++.+.++++.+|++.+++.+.  ..+.+.+. ...+++++.....|.. .....++.
T Consensus        72 l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~  150 (497)
T 2p4q_A           72 LKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMP  150 (497)
T ss_dssp             SCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             CCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEe
Confidence               999999999876644 5567888888888887765555543  34554442 2334554432222210 00113555


Q ss_pred             CCCChHHHHHHHHHHHHHhCCe------EEEecc-chhh----hHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022407          158 GADTSDETFRATKALAERFGKT------VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~------~v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~  221 (297)
                      +  ++++++++++++|+.+|.+      ++++++ ..|.    +.|.+.   ...++|++.++++. +++++++..++.
T Consensus       151 g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~  227 (497)
T 2p4q_A          151 G--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFA  227 (497)
T ss_dssp             E--ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            4  5788999999999999998      566653 3443    445543   46789999999983 689998887763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.72  E-value=8.1e-17  Score=143.43  Aligned_cols=197  Identities=14%  Similarity=0.159  Sum_probs=134.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~   79 (297)
                      |....+||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .+..... .-.....++.+++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~-----------~~~~~~~l~g~~l~~~i~~t~d~   93 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQA-----------EGVNNRYLPNYPFPETLKAYCDL   93 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH-----------HSSBTTTBTTCCCCTTEEEESCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------cCCCcccCCCCccCCCeEEECCH
Confidence            4444579999999999999999999999999999999988776532           2210000 000123457788888


Q ss_pred             cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH------HHhhhcCCCCeEEEeecCCCCCCC--
Q 022407           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT------RLASATSRPCQVIGMHFMNPPPLM--  150 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~------~l~~~~~~~~~~~g~h~~~p~~~~--  150 (297)
                      ++ +++||+||.++|..  ..+.+++++.+++++++++++.++++.+.      .+.+.++. ..+.   ....|...  
T Consensus        94 ~ea~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~---vlsgP~~a~e  167 (356)
T 3k96_A           94 KASLEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMA---VISGPSLATE  167 (356)
T ss_dssp             HHHHTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEE---EEESSCCHHH
T ss_pred             HHHHhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEE---EEECccHHHH
Confidence            65 88999999999865  47788999999999999999888887764      34454442 1221   11222211  


Q ss_pred             -----cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh-----h----------------HH----HHHHHHHH
Q 022407          151 -----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----I----------------VN----RILMPMIN  200 (297)
Q Consensus       151 -----~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~-----i----------------~n----ri~~~~~~  200 (297)
                           +...++.+  .+++..+.+.++|...+.++++..|..|.     +                .+    .++...++
T Consensus       168 v~~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~  245 (356)
T 3k96_A          168 VAANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLT  245 (356)
T ss_dssp             HHTTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence                 11222222  57889999999999999999888886541     1                11    12234578


Q ss_pred             HHHHHHHcCCCCHHHH
Q 022407          201 EAFFTLYTGVATKEDI  216 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~i  216 (297)
                      |+.++.+.-+++++.+
T Consensus       246 E~~~l~~a~G~~~~t~  261 (356)
T 3k96_A          246 EMGRLVSVFGGKQETL  261 (356)
T ss_dssp             HHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHhCCChHhh
Confidence            9999988877777754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.72  E-value=4.4e-17  Score=150.56  Aligned_cols=206  Identities=14%  Similarity=0.209  Sum_probs=136.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--hhh----h-cccCCceEE
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS--QAM----G-TDAPRRLRC   75 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~----~-~~~~~~i~~   75 (297)
                      ++||+|||+|.||.++|..|+++  |++|++||+++++++.+.+            |...  ...    . .....++++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~------------g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS------------PTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            47999999999999999999998  8999999999998876521            1110  000    0 001134677


Q ss_pred             ecCccc-ccCCcEEEEecccCHHH-------------HHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCC-e
Q 022407           76 TSNLKD-LHSADIIVEAIVESEDV-------------KKKLFSELDKITKASAILASNTSSISI---TRLASATSRPC-Q  137 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~-------------k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~-~  137 (297)
                      ++++++ +++||+||+|+|++...             ...+.+.+.+.++++++|+. +|++++   +.+.+.+.... .
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE-KSTVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE-CSCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE-CCcCCchHHHHHHHHHHHhCCC
Confidence            788765 88999999999876532             34566778888888887763 333332   33444332110 0


Q ss_pred             EEEee-cCCCCCCCccee---------Ee-cCCC--ChHHHHHHHHHHHHHh-CCeEEEeccc-----hhhhHHHHH---
Q 022407          138 VIGMH-FMNPPPLMKLVE---------VI-RGAD--TSDETFRATKALAERF-GKTVVCSQDY-----AGFIVNRIL---  195 (297)
Q Consensus       138 ~~g~h-~~~p~~~~~~ve---------v~-~~~~--~~~~~~~~~~~l~~~l-G~~~v~~~d~-----~g~i~nri~---  195 (297)
                      .+..+ .++|....+...         ++ .++.  .++++.+.+.++++.+ |..++++.+.     ..++.|.++   
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            01111 234544433221         43 3322  3788999999999998 7777777653     234666653   


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          196 MPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       196 ~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                      .+++||++.++++.+++++++..++...
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~~~~  259 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAIGMD  259 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence            5789999999999889999999887653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.71  E-value=1.2e-15  Score=131.68  Aligned_cols=153  Identities=18%  Similarity=0.144  Sum_probs=113.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |+|+|||+|.||..+|..|.++|++|++||+++++++.+           .+.|..           ....+++++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g~~-----------~~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-----------VERQLV-----------DEAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HhCCCC-----------ccccCCHHHhCCC
Confidence            489999999999999999999999999999999877665           223321           0234555555889


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCC------------C
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL------------M  150 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~------------~  150 (297)
                      |+||.|+|.+  ....++.++.+.++++++|++. ++...   +.+.+.+   .++++.|++..+..            .
T Consensus        59 D~vi~av~~~--~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~---~~~~~~~p~~g~~~~gp~~a~~~~~~g  132 (279)
T 2f1k_A           59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLW---SGFIGGHPMAGTAAQGIDGAEENLFVN  132 (279)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHS---TTCEEEEECCCCSCSSGGGCCTTTTTT
T ss_pred             CEEEEECCHH--HHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHh---CCEeecCcccCCccCCHHHHhHHHhCC
Confidence            9999999854  3567888888888888888764 44443   3344433   27888888763211            1


Q ss_pred             cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407          151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~  186 (297)
                      ....++++..++++..+.+.++|+.+|.+++++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~  168 (279)
T 2f1k_A          133 APYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPA  168 (279)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHH
T ss_pred             CcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence            145566666678999999999999999999888653

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.70  E-value=4.6e-16  Score=132.88  Aligned_cols=187  Identities=13%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++||+|||+|.||..++..|.+.|++|.+||+++++++.+.+.          .|.             ...+++++ ++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g~-------------~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LAL-------------PYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HTC-------------CBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cCC-------------EeeCCHHHHHh
Confidence            4689999999999999999999999999999999887665221          121             23455655 77


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc-ceeEecCCCCh
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIRGADTS  162 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vev~~~~~~~  162 (297)
                      ++|+||.|+|...  ..+++.++    .+++++++.+++++++.+.+.++...+++..++..|..... ...++.+..++
T Consensus        60 ~~D~Vi~~v~~~~--~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIKPQL--FETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSCGGG--HHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeCcHh--HHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999998432  33444433    36678888888888888887776555777777666654333 45567776679


Q ss_pred             HHHHHHHHHHHHHhCCeEEEeccch-hhh------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022407          163 DETFRATKALAERFGKTVVCSQDYA-GFI------VNRILMPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~d~~-g~i------~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      ++.++.++++|+.+| .++++++.. ..+      .+.++..++......+.+.+.++++.-.++.
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~  198 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVT  198 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999 577775421 111      1223333333333344444567766555544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.70  E-value=3.7e-16  Score=135.67  Aligned_cols=157  Identities=18%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++|+|||+|.||..+|..|+++  |++|++||+++++++.+           .+.|...           ..++++++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-----------~~~g~~~-----------~~~~~~~~~   63 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIA-----------LERGIVD-----------EATADFKVF   63 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHH-----------HHTTSCS-----------EEESCTTTT
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHH-----------HHcCCcc-----------cccCCHHHh
Confidence            47999999999999999999987  68999999999877655           2333210           24556655 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecC------CCCCC--
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFM------NPPPL--  149 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~------~p~~~--  149 (297)
                      +++||+||+|+|...  ...++.++.+. ++++++|++.++...  .+.+.+.++. ..++++.||+      .|...  
T Consensus        64 ~~~aDvVilavp~~~--~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~  141 (290)
T 3b1f_A           64 AALADVIILAVPIKK--TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANV  141 (290)
T ss_dssp             GGGCSEEEECSCHHH--HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCT
T ss_pred             hcCCCEEEEcCCHHH--HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhH
Confidence            789999999998655  36788888888 888888875443322  2566666654 6789999988      44321  


Q ss_pred             ----CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          150 ----MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ----~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                          ...+.++++..++++.++.+.++|+.+|..++++.+
T Consensus       142 ~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          142 NLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             TTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             HHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                123667777778889999999999999999887754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.69  E-value=3.6e-16  Score=143.33  Aligned_cols=206  Identities=12%  Similarity=0.101  Sum_probs=132.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||+|.||.++|..|+++|++|++||+++++++.+.+...    ..++.++..        .....++++++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~--------~~~~g~l~~t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ--------GRQTGRLSGTTDFKK   72 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH--------HHHTTCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHh--------hcccCceEEeCCHHH
Confidence            48999999999999999999999999999999998877632100    000000000        000234678888875


Q ss_pred             -ccCCcEEEEecccCHH---------HHHHHHHHHHhhccC---CeEEeec-CCCccH--HHHhhhcCC--CCeE-EEee
Q 022407           82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKA---SAILASN-TSSISI--TRLASATSR--PCQV-IGMH  142 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~---~~ii~s~-ts~~~~--~~l~~~~~~--~~~~-~g~h  142 (297)
                       +++||+||+|+|++..         ++ .+++++.+.+++   +++|+.. |..+..  +.+.+.+..  +.++ +..+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~~dl~~v~-~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~  151 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGDLDLGYIE-TVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG  151 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHH-HHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE
T ss_pred             HhccCCEEEEEcCCCcccCCCcchHHHH-HHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEE
Confidence             8899999999987654         44 466888888877   7776632 333322  223332211  1111 0000


Q ss_pred             -cCCCCCCCcce---------eEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-----hhhhHHHHH---HHHHHHHHH
Q 022407          143 -FMNPPPLMKLV---------EVIRGADTSDETFRATKALAERFGKTVVCSQDY-----AGFIVNRIL---MPMINEAFF  204 (297)
Q Consensus       143 -~~~p~~~~~~v---------ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-----~g~i~nri~---~~~~~Ea~~  204 (297)
                       .++|....+..         .++.+. .+++..+.+.++++.++..+++ .+.     ..++.|.+.   .+++||+..
T Consensus       152 v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~  229 (436)
T 1mv8_A          152 VGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGN  229 (436)
T ss_dssp             EEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12444333221         355543 3588899999999999985444 443     224555543   578999999


Q ss_pred             HHHcCCCCHHHHHHHHhh
Q 022407          205 TLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       205 l~~~g~~~~~~id~a~~~  222 (297)
                      ++++.+++++++..++..
T Consensus       230 l~~~~Gid~~~v~~~~~~  247 (436)
T 1mv8_A          230 IAKAVGVDGREVMDVICQ  247 (436)
T ss_dssp             HHHHTTSCHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHhcC
Confidence            999988999999888764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.68  E-value=3.9e-15  Score=128.64  Aligned_cols=155  Identities=18%  Similarity=0.237  Sum_probs=113.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      ++|+|||+|.||..+|..|+++|+  +|++||+++++++.+           .+.|...           ...+++++ +
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-----------~~~g~~~-----------~~~~~~~~~~   59 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAKVE   59 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGG
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----------HHCCCcc-----------cccCCHHHHh
Confidence            589999999999999999999999  999999999877654           2334310           23455644 7


Q ss_pred             c-CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCC----------
Q 022407           83 H-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPL----------  149 (297)
Q Consensus        83 ~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~----------  149 (297)
                      + +||+||+|+|...  ...++.++.+.++++++|+..++...  .+.+.+.++.  ++++.|++..+..          
T Consensus        60 ~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~l  135 (281)
T 2g5c_A           60 DFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNL  135 (281)
T ss_dssp             GTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSST
T ss_pred             cCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhHH
Confidence            8 9999999998664  44777888888888887765433322  2455555532  3788888654321          


Q ss_pred             -Cc-ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407          150 -MK-LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       150 -~~-~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~  186 (297)
                       .+ .+.++++..++++.++.+.++++.+|..++++++.
T Consensus       136 ~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~  174 (281)
T 2g5c_A          136 YEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPE  174 (281)
T ss_dssp             TTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCHH
T ss_pred             hCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence             12 35566666788999999999999999998887653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.68  E-value=5.2e-16  Score=143.67  Aligned_cols=204  Identities=13%  Similarity=0.152  Sum_probs=133.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--hhhhc-----ccCCceEE
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS--QAMGT-----DAPRRLRC   75 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~-----~~~~~i~~   75 (297)
                      ++||+|||+|.||.++|..|+++  |++|++||+++++++.+.+            |...  ....+     ....++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l~~   76 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNLFF   76 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            46999999999999999999998  7999999999998887622            1110  00000     01234678


Q ss_pred             ecCccc-ccCCcEEEEecccCHH-------------HHHHHHHHHHhhccCCeEEee-cCCCccH-HHHhhhcCC--C--
Q 022407           76 TSNLKD-LHSADIIVEAIVESED-------------VKKKLFSELDKITKASAILAS-NTSSISI-TRLASATSR--P--  135 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~-------------~k~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~l~~~~~~--~--  135 (297)
                      ++++++ +++||+||+|+|++..             ....+++.+.++++++++|+. +|..+.. +.+++.+..  .  
T Consensus        77 t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~  156 (481)
T 2o3j_A           77 SSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNN  156 (481)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC--
T ss_pred             ECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcC
Confidence            888754 8899999999987542             356677888888888887763 2333332 334433321  1  


Q ss_pred             --Ce-EEEeecCCCCCCCcc---------eeEecCCCC---hHHHHHHHHHHHHHhCC-eEEEeccch-----hhhHHHH
Q 022407          136 --CQ-VIGMHFMNPPPLMKL---------VEVIRGADT---SDETFRATKALAERFGK-TVVCSQDYA-----GFIVNRI  194 (297)
Q Consensus       136 --~~-~~g~h~~~p~~~~~~---------vev~~~~~~---~~~~~~~~~~l~~~lG~-~~v~~~d~~-----g~i~nri  194 (297)
                        .. .+..   +|....+.         ..++.|...   ++++++.++++++.++. .++++.+..     .++.|.+
T Consensus       157 ~~~d~~v~~---~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~  233 (481)
T 2o3j_A          157 ENLKFQVLS---NPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAF  233 (481)
T ss_dssp             --CCEEEEE---CCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred             cCCceEEEe---CcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH
Confidence              11 1222   33322211         134433222   23688999999999996 677766532     2344442


Q ss_pred             ---HHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407          195 ---LMPMINEAFFTLYTGVATKEDIDAGMKLG  223 (297)
Q Consensus       195 ---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g  223 (297)
                         ..+++||+..+++..+++++++..++..+
T Consensus       234 ~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~  265 (481)
T 2o3j_A          234 LAQRISSINSISAVCEATGAEISEVAHAVGYD  265 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhCcCHHHHHHHHccC
Confidence               35789999999999888999988887654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.68  E-value=4.5e-16  Score=143.87  Aligned_cols=193  Identities=18%  Similarity=0.209  Sum_probs=132.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||.+||..|+++|++|++|||++++++.+.+..         .+           ..+..++++++ ++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v~   74 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN---------PG-----------KKLVPYYTVKEFVE   74 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------TT-----------SCEEECSSHHHHHH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------CC-----------CCeEEeCCHHHHHh
Confidence            36899999999999999999999999999999999887663210         00           12456677766 55


Q ss_pred             C---CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCC-CCcceeEe
Q 022407           84 S---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPP-LMKLVEVI  156 (297)
Q Consensus        84 ~---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~-~~~~vev~  156 (297)
                      +   ||+||.|||....+ +.++.++.+.++++.+|++.+++.+.  ..+.+.+. ...++++......|. ......++
T Consensus        75 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~  153 (480)
T 2zyd_A           75 SLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIM  153 (480)
T ss_dssp             TBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEE
T ss_pred             CCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEE
Confidence            5   99999999986554 45667888888888888766666643  34554442 234555442222111 00011355


Q ss_pred             cCCCChHHHHHHHHHHHHHhCCe-------EEEecc-chhh----hHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHH
Q 022407          157 RGADTSDETFRATKALAERFGKT-------VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYT-GVATKEDIDAGM  220 (297)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~lG~~-------~v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a~  220 (297)
                      .+  ++++.++.++++|+.+|.+       +.++++ ..|.    +.|.+.   ...++|++.++++ .+++++++..++
T Consensus       154 ~g--g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~  231 (480)
T 2zyd_A          154 PG--GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTF  231 (480)
T ss_dssp             EE--SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             ec--CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            55  5789999999999999998       566654 2332    344432   4678999999988 357888887665

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.67  E-value=1.4e-16  Score=138.10  Aligned_cols=188  Identities=15%  Similarity=0.153  Sum_probs=127.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|++ |++|++||+++++.+.+.+           .|.             ...+ +++ +++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~-----------~g~-------------~~~~-~~~~~~~   55 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQE-----------EFG-------------SEAV-PLERVAE   55 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHH-----------HHC-------------CEEC-CGGGGGG
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH-----------CCC-------------cccC-HHHHHhC
Confidence            579999999999999999999 9999999999988766522           121             1233 444 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCC-CCeEEEeecCCC-CCC--CcceeEecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSR-PCQVIGMHFMNP-PPL--MKLVEVIRG  158 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~~~~g~h~~~p-~~~--~~~vev~~~  158 (297)
                      +|+||+|+|.+..++ .++.++.+.+++++++++.++..  ....+.+.+.. ..+++.. ++.+ +..  .+...++.+
T Consensus        56 ~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            999999999776554 45677877788888777433322  23456665533 2344443 2211 100  011223333


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEeccc-hhh----hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQDY-AGF----IVNRI---LMPMINEAFFTLYTGVATKEDIDAGMKLGT  224 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g~----i~nri---~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~  224 (297)
                        ++++.++.+.++| .+|.+++++++. .+.    +.|.+   +...++|++.++++.+++++++...+..+.
T Consensus       134 --~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  204 (289)
T 2cvz_A          134 --GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASS  204 (289)
T ss_dssp             --SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             --CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccC
Confidence              4788999999999 999988887653 232    23443   246789999999988889999888876554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.67  E-value=1.9e-15  Score=129.14  Aligned_cols=147  Identities=15%  Similarity=0.169  Sum_probs=108.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+||+|||+|.||.+||..|+++|    ++|++||+++++                 .|             +...++.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            368999999999999999999999    799999998764                 12             24555665


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC-cceeEecC
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-KLVEVIRG  158 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-~~vev~~~  158 (297)
                      + +++||+||+|+|...  ..+++.++.+.+ ++.++++.+++++++.+.+.++...+++...+..|.... +...++.+
T Consensus        54 ~~~~~~D~vi~~v~~~~--~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVKPDI--AGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSCTTT--HHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeCHHH--HHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            5 789999999999543  567778888777 566777889999988777776654344432222232222 23335566


Q ss_pred             CCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          159 ADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      ..++++.++.+.++|+.+|+ ++++++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            66789999999999999997 777754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.66  E-value=2.7e-15  Score=138.67  Aligned_cols=193  Identities=18%  Similarity=0.174  Sum_probs=132.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..|+++|++|++||+++++++.+.+..          +.          ..+..++++++ +++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~----------~~----------~gi~~~~s~~e~v~~   65 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH----------QD----------KNLVFTKTLEEFVGS   65 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TT----------SCEEECSSHHHHHHT
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC----------cC----------CCeEEeCCHHHHHhh
Confidence            6899999999999999999999999999999999887663210          00          12456667765 454


Q ss_pred             ---CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEeecCCCCCC-CcceeEec
Q 022407           85 ---ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        85 ---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p~~~-~~~vev~~  157 (297)
                         +|+||.|+|....++ .++.++.+.++++++|++.+++.+.  ..+.+.+.. ..++++.....++.. .....++.
T Consensus        66 l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~  144 (474)
T 2iz1_A           66 LEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMP  144 (474)
T ss_dssp             BCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEE
T ss_pred             ccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEe
Confidence               999999999876544 5667888888888887766655543  456665543 334554432222110 00112444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCe--------EEEecc-chh----hhHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHH
Q 022407          158 GADTSDETFRATKALAERFGKT--------VVCSQD-YAG----FIVNRIL---MPMINEAFFTLYT-GVATKEDIDAGM  220 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~--------~v~~~d-~~g----~i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a~  220 (297)
                      +  ++++.++.+.++|+.+|.+        +.++++ ..|    ++.|.+.   ...++|++.++++ .+++++++..++
T Consensus       145 g--g~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~  222 (474)
T 2iz1_A          145 G--GQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIF  222 (474)
T ss_dssp             E--ECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            4  4789999999999999987        456654 233    2444443   4678999999998 467888887766


Q ss_pred             h
Q 022407          221 K  221 (297)
Q Consensus       221 ~  221 (297)
                      .
T Consensus       223 ~  223 (474)
T 2iz1_A          223 E  223 (474)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.65  E-value=4e-16  Score=150.21  Aligned_cols=99  Identities=28%  Similarity=0.308  Sum_probs=92.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCC-CCCCCcH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGD-SKYAPCP  262 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~-~~~~~~~  262 (297)
                      ..+..|++.+++||+++++++|++ ++.|||.++.+|+|||.   |||+|+|.+|++.++..++.+.+.+++ ++|+|++
T Consensus       636 ~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~  715 (742)
T 3zwc_A          636 EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSD  715 (742)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCH
Confidence            469999999999999999999998 59999999999999998   999999999999999999999999998 6899999


Q ss_pred             HHHHHHHcCCCCcccCCcccccCC
Q 022407          263 LLVQYVDAGRLGKKRGIGVFDYRR  286 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy~y~~  286 (297)
                      +|++|+++|....+.++|||.+.+
T Consensus       716 ~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          716 YLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             HHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHcCCCcccccccccCCCC
Confidence            999999999988888888887754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.65  E-value=4.6e-15  Score=126.98  Aligned_cols=178  Identities=13%  Similarity=0.168  Sum_probs=117.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      |||+|||+|.||..||..|+++|++|++||+  +++.++.+           .+.|.             +  ++.++ +
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~-----------~~~g~-------------~--~~~~~~~   54 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERA-----------RTVGV-------------T--ETSEEDV   54 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHH-----------HHHTC-------------E--ECCHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHH-----------HHCCC-------------c--CCHHHHH
Confidence            4899999999999999999999999999998  66665543           22232             2  44545 7


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCC--CcceeEec
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL--MKLVEVIR  157 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~--~~~vev~~  157 (297)
                      ++||+||+|+|.+...+. + .++.+.+++  ++++. ++..+   +.+.+.+.... ++..+.+.+|..  .+...++.
T Consensus        55 ~~aDvvi~~v~~~~~~~~-~-~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~~~~~  128 (264)
T 1i36_A           55 YSCPVVISAVTPGVALGA-A-RRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIRIIAS  128 (264)
T ss_dssp             HTSSEEEECSCGGGHHHH-H-HHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCEEEEE
T ss_pred             hcCCEEEEECCCHHHHHH-H-HHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCeEEec
Confidence            899999999998765443 3 566666666  44432 34432   46777665443 666666655421  12232333


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchhh-----hHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHhh
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAGF-----IVNRIL----MPMINEAFFTLYTGVATKEDIDAGMKL  222 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~-----i~nri~----~~~~~Ea~~l~~~g~~~~~~id~a~~~  222 (297)
                      +.   ++  +.+++ |+.+|+.++++++.+|.     ++++.+    ...++|++.+.++.+++++.+ ..+..
T Consensus       129 g~---~~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~~~  195 (264)
T 1i36_A          129 GR---DA--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EMLEY  195 (264)
T ss_dssp             ST---TH--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHT
T ss_pred             CC---cH--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHH
Confidence            32   22  77788 99999998888753342     444443    467899999988877777644 44443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.65  E-value=4.6e-16  Score=129.70  Aligned_cols=152  Identities=18%  Similarity=0.261  Sum_probs=109.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|||+|.||..+|..|+++|++|++ +|+++++++.+.+.          .|.            ....++.+.++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~------------~~~~~~~~~~~   80 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGA------------SVKAVELKDAL   80 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTT------------TEEECCHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCC------------CcccChHHHHh
Confidence            47999999999999999999999999999 99999887765221          121            02334445588


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--------------cHHHHhhhcCCCCeEEEeecCCCCCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--------------SITRLASATSRPCQVIGMHFMNPPPL  149 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--------------~~~~l~~~~~~~~~~~g~h~~~p~~~  149 (297)
                      ++|+||.|+|...  ..+++.++.+ . +++++++.+.++              ..+.+++.++ ..+++...++.|+..
T Consensus        81 ~aDvVilavp~~~--~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~v  155 (220)
T 4huj_A           81 QADVVILAVPYDS--IADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAAV  155 (220)
T ss_dssp             TSSEEEEESCGGG--HHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHHH
T ss_pred             cCCEEEEeCChHH--HHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHHH
Confidence            9999999998543  5667777665 4 467888788777              3467777775 356665544333211


Q ss_pred             C---------cceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          150 M---------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       150 ~---------~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      .         +...++.+  .+++..+.+.++++.+|++++.+++
T Consensus       156 ~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          156 LAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             hhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            1         12233333  5799999999999999999999876

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.64  E-value=1.5e-15  Score=140.71  Aligned_cols=194  Identities=14%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c--
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L--   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~--   82 (297)
                      ++|+|||+|.||..+|..|+++|++|++||+++++++.+.+.          ..  .       -..+..++++++ +  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~~--~-------g~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----------EA--K-------GTKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----------TT--T-------TSSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----------cc--c-------CCCeEEeCCHHHHHhh
Confidence            579999999999999999999999999999999988766220          00  0       012456677766 3  


Q ss_pred             -cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCCC-CcceeEec
Q 022407           83 -HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vev~~  157 (297)
                       +++|+||.|+|....++ .++.++.+.++++++|++.+++.+.  ..+.+.+. ....+++.....++.. .....++.
T Consensus        64 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~  142 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMP  142 (482)
T ss_dssp             BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             ccCCCEEEEeCCChHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEe
Confidence             48999999999876544 4667888888888887766655543  34544442 2345555432222210 00012444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeE-------EEecc-chh----hhHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022407          158 GADTSDETFRATKALAERFGKTV-------VCSQD-YAG----FIVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~-------v~~~d-~~g----~i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~  221 (297)
                      +  ++++.++.+.++|+.+|.++       +++++ ..|    ++.|.+.   ..+++|++.++++. +++++++..++.
T Consensus       143 g--g~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          143 G--GNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             E--ECTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence            4  36788999999999999886       44432 233    3445443   46789999999987 889988887764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.64  E-value=3.2e-15  Score=138.21  Aligned_cols=197  Identities=16%  Similarity=0.140  Sum_probs=133.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH-   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-   83 (297)
                      |+|+|||+|.||..+|..|+++|++|++||+++++++.+.+.          .|.. +.     ..++..++++++ ++ 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~-~~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASA-PF-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTS-TT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCC-CC-----CCCeEEECCHHHHHhc
Confidence            479999999999999999999999999999999988766321          1211 00     023556777766 44 


Q ss_pred             --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC-CCCeEEEeecCCCCCC-CcceeEec
Q 022407           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS-RPCQVIGMHFMNPPPL-MKLVEVIR  157 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~-~~~~~~g~h~~~p~~~-~~~vev~~  157 (297)
                        ++|+||.|+|....++ .++.++.+.++++++|++.+++.+.  ..+.+.+. ....+++.....++.. .....++.
T Consensus        66 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~  144 (478)
T 1pgj_A           66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFP  144 (478)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             ccCCCEEEEecCChHHHH-HHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEec
Confidence              5999999999876544 5667888888888887766655543  45555443 2345555433222210 00112444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCe-------EEEecc-chhh----hHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHh
Q 022407          158 GADTSDETFRATKALAERFGKT-------VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~-------~v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      +  ++++.++.++++++.+|.+       ++++++ ..|.    +.|.+.   ..+++|++.+++..+++++++..++.
T Consensus       145 g--g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          145 G--GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             E--ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4  4688999999999999987       556654 2332    344433   35789999999988889988888775

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.63  E-value=9.6e-17  Score=146.33  Aligned_cols=93  Identities=22%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCC-CCCc
Q 022407          187 AGFIVNRILMPMINEAFFTLYTGVAT-KEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSK-YAPC  261 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g~~~-~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~-~~~~  261 (297)
                      ...+.+|++.+++||+++++++|+++ +.|||.++.+|+|||.   |||+|+|.+|++.++..++.|.+.+++.+ |+|+
T Consensus       355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~  434 (460)
T 3k6j_A          355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVA  434 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            35699999999999999999999995 9999999999999998   99999999999999999999999999954 9999


Q ss_pred             HHHHHHHHcCCCCcccCC
Q 022407          262 PLLVQYVDAGRLGKKRGI  279 (297)
Q Consensus       262 ~~l~~~~~~g~~G~~~g~  279 (297)
                      ++|++|+++|++|+|+|.
T Consensus       435 ~~L~~~a~~g~~~~~~~~  452 (460)
T 3k6j_A          435 DALKTANVSTGSSGSSGG  452 (460)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHcCCCccccCC
Confidence            999999999999999994

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.61  E-value=4.2e-14  Score=128.13  Aligned_cols=202  Identities=16%  Similarity=0.167  Sum_probs=126.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CChhh----hcccCCceEEecCcc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ-LSQAM----GTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~----~~~~~~~i~~~~~~~   80 (297)
                      |||+|||+|.||.++|..|++ |++|++||+++++++.+.+           .+. +....    ......++.++++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~-----------~~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN-----------GLSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT-----------TCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc-----------CCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            489999999999999999999 9999999999998877522           221 00000    000123466777775


Q ss_pred             c-ccCCcEEEEecccCHH---------HHHHHHHHHHhhccCCeEEee-cCCCccH-HHHhhhcCCCCeEEEe-ecCCCC
Q 022407           81 D-LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILAS-NTSSISI-TRLASATSRPCQVIGM-HFMNPP  147 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~l~~~~~~~~~~~g~-h~~~p~  147 (297)
                      + +++||+||.|+|....         ....+++.+.+ ++++++|+. +|.++.. +.+.+.++.. .++.. .+..|.
T Consensus        69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v~~~Pe~~~~G  146 (402)
T 1dlj_A           69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RIIFSPEFLRES  146 (402)
T ss_dssp             HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CEEECCCCCCTT
T ss_pred             HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eEEECCccccCc
Confidence            4 8899999999998631         35567777877 777777664 5655554 4566655432 22211 111111


Q ss_pred             CCC-cce---eEecCCCC-----hHHHHHHHHHHHHHhCC--e-EEEeccch-h----hhHHHHH---HHHHHHHHHHHH
Q 022407          148 PLM-KLV---EVIRGADT-----SDETFRATKALAERFGK--T-VVCSQDYA-G----FIVNRIL---MPMINEAFFTLY  207 (297)
Q Consensus       148 ~~~-~~v---ev~~~~~~-----~~~~~~~~~~l~~~lG~--~-~v~~~d~~-g----~i~nri~---~~~~~Ea~~l~~  207 (297)
                      ... ...   .++.|...     ..+..+.+.+++..-+.  . ++++.+.. +    ++.|-++   .+++||+..+++
T Consensus       147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~  226 (402)
T 1dlj_A          147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE  226 (402)
T ss_dssp             STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111 011   14444322     12556777777875332  2 56666532 1    2334332   467999999999


Q ss_pred             cCCCCHHHHHHHHh
Q 022407          208 TGVATKEDIDAGMK  221 (297)
Q Consensus       208 ~g~~~~~~id~a~~  221 (297)
                      ..+++++++..++.
T Consensus       227 ~~Gid~~~v~~~~~  240 (402)
T 1dlj_A          227 SRKLNSHMIIQGIS  240 (402)
T ss_dssp             HTTCCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHhc
Confidence            98899999888774

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.61  E-value=4.2e-14  Score=128.16  Aligned_cols=202  Identities=12%  Similarity=0.102  Sum_probs=129.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .+.+|+|||+|.||.++|..|++.||+|+.+|+++++++.+.+.        +...+.+.++.            +++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence            35699999999999999999999999999999999999886432        12222222333            45788


Q ss_pred             ecCccc-ccCCcEEEEecccC--------HHHHHHHHHHHHhhcc----CCeEEeecCCCccH-HHHh-hhc---CCCCe
Q 022407           76 TSNLKD-LHSADIIVEAIVES--------EDVKKKLFSELDKITK----ASAILASNTSSISI-TRLA-SAT---SRPCQ  137 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~--------~~~k~~~~~~l~~~~~----~~~ii~s~ts~~~~-~~l~-~~~---~~~~~  137 (297)
                      +++.++ +++||++|.|||++        ........+.+.+.++    ...||..+|..+.. +++. ..+   .....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~  167 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVK  167 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCC
Confidence            888876 89999999999863        2234455556666553    34455555544433 2221 111   11112


Q ss_pred             E-EEeecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh---hhHHHHH----HHHHH
Q 022407          138 V-IGMHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG---FIVNRIL----MPMIN  200 (297)
Q Consensus       138 ~-~g~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g---~i~nri~----~~~~~  200 (297)
                      | ++   ++|..+.+.         -.++.| .+++.+.+.+..+++.+....+++.-...   .++++.+    .+++|
T Consensus       168 f~v~---~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~N  243 (444)
T 3vtf_A          168 FSVA---SNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFAN  243 (444)
T ss_dssp             CEEE---ECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceee---cCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHH
Confidence            1 22   244433321         123433 25677888899999888766555432222   2333333    47899


Q ss_pred             HHHHHHHcCCCCHHHHHHHHh
Q 022407          201 EAFFTLYTGVATKEDIDAGMK  221 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~id~a~~  221 (297)
                      |...++++-+++..++-.++.
T Consensus       244 Ela~ice~~GiDv~eV~~a~~  264 (444)
T 3vtf_A          244 EVGLLAKRLGVDTYRVFEAVG  264 (444)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHhc
Confidence            999999998899888777764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.60  E-value=2e-14  Score=127.34  Aligned_cols=149  Identities=19%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||.++|..|..+|++|+++|+++++ .+.+           .+.|.             ... +.++ ++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a-----------~~~G~-------------~~~-~~~e~~~   71 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHGL-------------KVA-DVKTAVA   71 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTTC-------------EEE-CHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHH-----------HHCCC-------------EEc-cHHHHHh
Confidence            68999999999999999999999999999998765 3322           22332             233 5544 78


Q ss_pred             CCcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecCCCccHHHHhhhc-CCCCeEEEeecCCCCCC---------Ccc
Q 022407           84 SADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASAT-SRPCQVIGMHFMNPPPL---------MKL  152 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g~h~~~p~~~---------~~~  152 (297)
                      +||+||.|+|....  ..++. ++.+.++++++|++. +++.. .+.... +....+++.||..|...         ...
T Consensus        72 ~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~  147 (338)
T 1np3_A           72 AADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIP  147 (338)
T ss_dssp             TCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCC
T ss_pred             cCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCe
Confidence            99999999997653  67777 888888888888865 45554 333322 22346899999766531         111


Q ss_pred             eeEecCCCChHHHHHHHHHHHHHhCC-e--EEEe
Q 022407          153 VEVIRGADTSDETFRATKALAERFGK-T--VVCS  183 (297)
Q Consensus       153 vev~~~~~~~~~~~~~~~~l~~~lG~-~--~v~~  183 (297)
                      +-++++..++++..+.+..+++.+|. .  ++.+
T Consensus       148 ~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~  181 (338)
T 1np3_A          148 DLIAIYQDASGNAKNVALSYACGVGGGRTGIIET  181 (338)
T ss_dssp             EEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEEC
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHcCCCccceEee
Confidence            22455555778889999999999998 4  5555

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.58  E-value=4e-14  Score=117.05  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +||+||| +|.||..++..|+++|++|+++|+++++.+.+.+....    ....            ..+.. +++++ ++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            4899999 99999999999999999999999999887665432211    1110            11332 34444 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--------------HHHHhhhcCCCCeEEEeecCCCCCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--------------ITRLASATSRPCQVIGMHFMNPPPL  149 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--------------~~~l~~~~~~~~~~~g~h~~~p~~~  149 (297)
                      ++|+||.|+|.+.  ...++.++.+.++ ++++++.+++++              .+++++.++. .+++..++..+...
T Consensus        64 ~~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHH
T ss_pred             cCCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHH
Confidence            8999999998544  4467777776664 788888888776              5777777753 56776543222111


Q ss_pred             -------CcceeEecCCCChHHHHHHHHHHHHHh-CCeEEEecc
Q 022407          150 -------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD  185 (297)
Q Consensus       150 -------~~~vev~~~~~~~~~~~~~~~~l~~~l-G~~~v~~~d  185 (297)
                             ..+..++.+.  +++.++.+.++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                   1133455553  588999999999999 999988876

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.57  E-value=2.2e-14  Score=125.89  Aligned_cols=171  Identities=13%  Similarity=0.138  Sum_probs=109.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChh-hhcccCCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-----G-LDVWLVDTDPDALVRATKSISSSIQKFVS-KGQLSQA-MGTDAPRR   72 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~   72 (297)
                      |....+||+|||+|.||..+|..|+++     | ++|++||+ +++++.+           .+ .|..... .......+
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l-----------~~~~g~~~~~~~~~~~~~~   71 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAI-----------RAAGGLRVVTPSRDFLARP   71 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHH-----------HHHTSEEEECSSCEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHH-----------HhcCCeEEEeCCCCeEEec
Confidence            555567999999999999999999999     9 99999999 7666654           22 3321000 00001112


Q ss_pred             eEEecCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC--
Q 022407           73 LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMNPPPL--  149 (297)
Q Consensus        73 i~~~~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~--  149 (297)
                      +..+++.+.++++|+||.|++...  ...++.++.+.++++++|++.+.++.. +.+.+.++...-+.++.++..+..  
T Consensus        72 ~~~~~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~p  149 (317)
T 2qyt_A           72 TCVTDNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAP  149 (317)
T ss_dssp             SEEESCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEET
T ss_pred             ceEecCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCC
Confidence            344455555789999999998766  367778888888888888877888877 566666654322233333222211  


Q ss_pred             ------Cc-ceeEecC--CCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407          150 ------MK-LVEVIRG--ADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       150 ------~~-~vev~~~--~~~~~~~~~~~~~l~~~lG~~~v~~~d~  186 (297)
                            .. ...++..  ...+++.+ .+.++|+..|..+++.+|.
T Consensus       150 g~~~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di  194 (317)
T 2qyt_A          150 GLITLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDI  194 (317)
T ss_dssp             TEEEEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCH
T ss_pred             CEEEEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHH
Confidence                  01 1111322  23456667 8899999999988877764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.57  E-value=3.6e-14  Score=120.15  Aligned_cols=163  Identities=17%  Similarity=0.286  Sum_probs=100.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HH-HHHHHHHHH-HHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LV-RATKSISSS-IQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .+||+|||+|.||.+||..|+++|++|++||+++++ +. .......+. +..+.+.           ...... ++.++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~e   86 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-----------HPHVHL-AAFAD   86 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG-----------STTCEE-EEHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-----------cCceec-cCHHH
Confidence            479999999999999999999999999999999886 11 100000000 0111111           111233 34444


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHH-HhhccCCeEEeecCCCc----------------cH-HHHhhhcCCCCeEE-Ee
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTSSI----------------SI-TRLASATSRPCQVI-GM  141 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts~~----------------~~-~~l~~~~~~~~~~~-g~  141 (297)
                       +++||+||.|+|.+...  .++.++ .+.+ ++++|++.+.++                .. +.+++.++. .+++ ++
T Consensus        87 ~~~~aDvVilavp~~~~~--~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~  162 (245)
T 3dtt_A           87 VAAGAELVVNATEGASSI--AALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTL  162 (245)
T ss_dssp             HHHHCSEEEECSCGGGHH--HHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECS
T ss_pred             HHhcCCEEEEccCcHHHH--HHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEee
Confidence             78999999999976643  455566 5555 566666555322                22 456666653 4554 45


Q ss_pred             ecCCCCCCC--------cceeEecCCCChHHHHHHHHHHHHHhCCe-EEEecc
Q 022407          142 HFMNPPPLM--------KLVEVIRGADTSDETFRATKALAERFGKT-VVCSQD  185 (297)
Q Consensus       142 h~~~p~~~~--------~~vev~~~~~~~~~~~~~~~~l~~~lG~~-~v~~~d  185 (297)
                      ++.+.|...        ++.-++.+  .+++.++.++++|+.+|+. ++++++
T Consensus       163 ~~~~a~v~~~~~~a~~g~~~~~v~g--~d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          163 NTMNASLMVDPGRAAGGDHSVFVSG--NDAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             TTSCHHHHHCGGGTGGGCCCEEEEC--SCHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             cccCHHHhcCccccCCCCeeEEEEC--CCHHHHHHHHHHHHHcCCCceeccCc
Confidence            554433111        12223334  4789999999999999975 477766

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.57  E-value=2.5e-14  Score=128.18  Aligned_cols=192  Identities=15%  Similarity=0.123  Sum_probs=121.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc-ccC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .+..... ........+..++++++ +++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE-----------KRENVLFLKGVQLASNITFTSDVEKAYNG   85 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHH-----------HTBCTTTSTTCBCCTTEEEESCHHHHHTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccccccccccceeeeCCHHHHHcC
Confidence            8999999999999999999999999999999988776522           1210000 00011234566777765 789


Q ss_pred             CcEEEEecccCHHHHHHHHHH----HHhhccC-CeEEeecCCCccHH---HHhhhcCC--CC-eEEEeecCCCCCCC---
Q 022407           85 ADIIVEAIVESEDVKKKLFSE----LDKITKA-SAILASNTSSISIT---RLASATSR--PC-QVIGMHFMNPPPLM---  150 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~----l~~~~~~-~~ii~s~ts~~~~~---~l~~~~~~--~~-~~~g~h~~~p~~~~---  150 (297)
                      ||+||.|+|.  .....++.+    +.+.+++ +++|++.++++.+.   .+.+.+..  +. ...   ....|...   
T Consensus        86 aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~---v~~gp~~~~~~  160 (366)
T 1evy_A           86 AEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLS---VLAGPSFAIEV  160 (366)
T ss_dssp             CSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEE---EEESSCCHHHH
T ss_pred             CCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEE---EEeCCChHHHH
Confidence            9999999985  345677777    8887877 77777777666542   12222211  11 111   11122211   


Q ss_pred             --cc-eeEecCCCChHHHHHHHHHHHHHh--CCeEEEeccchhh-----hH----------------HH----HHHHHHH
Q 022407          151 --KL-VEVIRGADTSDETFRATKALAERF--GKTVVCSQDYAGF-----IV----------------NR----ILMPMIN  200 (297)
Q Consensus       151 --~~-vev~~~~~~~~~~~~~~~~l~~~l--G~~~v~~~d~~g~-----i~----------------nr----i~~~~~~  200 (297)
                        .. ..++.+ ..+++.++.+.++|...  +..+++..|..+.     +.                ++    +....++
T Consensus       161 ~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~  239 (366)
T 1evy_A          161 ATGVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLL  239 (366)
T ss_dssp             HTTCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhCCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHH
Confidence              11 112222 35678899999999999  8877777765431     11                12    2335688


Q ss_pred             HHHHHHHcCCCCHHH
Q 022407          201 EAFFTLYTGVATKED  215 (297)
Q Consensus       201 Ea~~l~~~g~~~~~~  215 (297)
                      |++.+++..++++++
T Consensus       240 E~~~la~a~Gi~~~~  254 (366)
T 1evy_A          240 EIRDLTAALGGDGSA  254 (366)
T ss_dssp             HHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHhCCCCcc
Confidence            999999876666543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.55  E-value=3.7e-14  Score=126.44  Aligned_cols=196  Identities=16%  Similarity=0.116  Sum_probs=123.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCChh-hhcccCC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPD-----ALVRATKSISSSIQKFVSKGQLSQA-MGTDAPR   71 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~   71 (297)
                      .+||+|||+|.||.++|..|+++|       ++|++||++++     ..+.+.           +.+..... .......
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~   76 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIIN-----------TQHENVKYLPGHKLPP   76 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHH-----------HHSCCTTTSTTCCCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHH-----------hcCcccccCCcccCcc
Confidence            369999999999999999999999       99999999987     655442           11110000 0001123


Q ss_pred             ceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--------HH-HhhhcCCCCeEEEe
Q 022407           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--------TR-LASATSRPCQVIGM  141 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~-l~~~~~~~~~~~g~  141 (297)
                      ++..++++++ +++||+||+|+|+.  ....++.++.+.++++++|++.++++.+        .+ +.+.++.+..+. .
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~~--~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~-~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPHQ--FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVL-M  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCGG--GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEE-E
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEE-E
Confidence            4666777765 78999999999974  3677888898888889998888877652        11 222233211111 1


Q ss_pred             ecCCCCCC-Ccc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh-----hH----------------H----HH
Q 022407          142 HFMNPPPL-MKL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----IV----------------N----RI  194 (297)
Q Consensus       142 h~~~p~~~-~~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~-----i~----------------n----ri  194 (297)
                      .+..+... .+. ..++.+ ..+++..+.+.++|+..|..+++..|..+.     +.                +    .+
T Consensus       154 gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~  232 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV  232 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHH
Confidence            11111000 011 112222 356788999999999999988888775431     11                2    22


Q ss_pred             HHHHHHHHHHHHHcCCC---CHHH
Q 022407          195 LMPMINEAFFTLYTGVA---TKED  215 (297)
Q Consensus       195 ~~~~~~Ea~~l~~~g~~---~~~~  215 (297)
                      +...++|+..+++.-++   ++++
T Consensus       233 ~~~~~~E~~~la~a~G~~~~~~~~  256 (354)
T 1x0v_A          233 IRLGLMEMIAFAKLFCSGPVSSAT  256 (354)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCGGG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccc
Confidence            34567899988876444   5544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.55  E-value=8.7e-14  Score=114.89  Aligned_cols=135  Identities=15%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .++|+|||+|.||.++|..|+++|++|++||++++                                         .+++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~~   57 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATTL   57 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhcc
Confidence            47899999999999999999999999999998753                                         3457


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc---------------HHHHhhhcCCCCeEEE-eecCCCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---------------ITRLASATSRPCQVIG-MHFMNPPP  148 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---------------~~~l~~~~~~~~~~~g-~h~~~p~~  148 (297)
                      ||+||.|+| .. ..+.++.++.+.++ ++++++.+++++               .+.+++.++ ..+++. .|++..|.
T Consensus        58 aD~vi~av~-~~-~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~  133 (209)
T 2raf_A           58 GEIVIMAVP-YP-ALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAAT  133 (209)
T ss_dssp             CSEEEECSC-HH-HHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHH
T ss_pred             CCEEEEcCC-cH-HHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhh
Confidence            999999998 33 35577888877777 888887777665               345666554 357776 56544331


Q ss_pred             C-----C---cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407          149 L-----M---KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDY  186 (297)
Q Consensus       149 ~-----~---~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~  186 (297)
                      .     .   +...++.+  .+++..+.+.++++.+|.+++++++.
T Consensus       134 ~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~i  177 (209)
T 2raf_A          134 LQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGKL  177 (209)
T ss_dssp             HHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEESG
T ss_pred             ccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCCH
Confidence            1     1   12222332  46789999999999999999988773

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.55  E-value=9.2e-14  Score=122.13  Aligned_cols=174  Identities=14%  Similarity=0.201  Sum_probs=118.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .+||+|||+|.||..+|..|+++|++|++| +++++++.+.           +.|............++..+++.+++++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   86 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIE-----------ATGLRLETQSFDEQVKVSASSDPSAVQG   86 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHH-----------HHCEEEECSSCEEEECCEEESCGGGGTT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHH-----------hCCeEEEcCCCcEEEeeeeeCCHHHcCC
Confidence            479999999999999999999999999999 9988777652           2231100000011234556677777889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEee-c-----CCCCCCCc--ceeE
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMH-F-----MNPPPLMK--LVEV  155 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h-~-----~~p~~~~~--~vev  155 (297)
                      +|+||.|+|...  ...+++++.+.++++++|++.++++.. +.+.+.++  .++++.. +     ..|-....  .-.+
T Consensus        87 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~~  162 (318)
T 3hwr_A           87 ADLVLFCVKSTD--TQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGEL  162 (318)
T ss_dssp             CSEEEECCCGGG--HHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEEEccccc--HHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCceE
Confidence            999999999763  567888999999999999999999998 56666665  4454321 1     12221111  0112


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHH
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMP  197 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~  197 (297)
                      ..+.   .+..+.+.++|...|..+.+..|..+..+..++..
T Consensus       163 ~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N  201 (318)
T 3hwr_A          163 VIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILN  201 (318)
T ss_dssp             EECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHH
Confidence            2232   23456778889999998888888777655555443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.54  E-value=1.1e-13  Score=124.44  Aligned_cols=193  Identities=13%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCChh-hhcccCC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPD-----ALVRATKSISSSIQKFVSKGQLSQA-MGTDAPR   71 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~   71 (297)
                      ++||+|||+|.||.+||..|+++|       ++|++||++++     +++.+.           +.+..... .......
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~   89 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIIN-----------NKHENTKYLKGVPLPH   89 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHH-----------HHCBCTTTSTTCBCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHH-----------hcCcccccCCcccCcC
Confidence            468999999999999999999999       99999999987     555432           21110000 0001223


Q ss_pred             ceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHh----hccCCeEEeecCCCccH-----HH----HhhhcCCCCe
Q 022407           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK----ITKASAILASNTSSISI-----TR----LASATSRPCQ  137 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~----~~~~~~ii~s~ts~~~~-----~~----l~~~~~~~~~  137 (297)
                      ++..++++++ +++||+||+|+|+  ...++++.++.+    .+++++++++.++++++     ..    +.+.++.+..
T Consensus        90 ~i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~  167 (375)
T 1yj8_A           90 NIVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCS  167 (375)
T ss_dssp             TEEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEE
T ss_pred             CeEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEE
Confidence            5677777766 7899999999985  447788888888    88889998888877654     11    2222221111


Q ss_pred             EEEeecCCCCCCC------cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh-----hH---------------
Q 022407          138 VIGMHFMNPPPLM------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF-----IV---------------  191 (297)
Q Consensus       138 ~~g~h~~~p~~~~------~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~-----i~---------------  191 (297)
                      +.     ..|...      ....++.+ ..+++..+.+.++|...|..+++..|..+.     +.               
T Consensus       168 v~-----~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~  241 (375)
T 1yj8_A          168 AL-----SGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNL  241 (375)
T ss_dssp             EE-----ECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EE-----eCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            11     122211      11112222 256788899999999999988888876441     11               


Q ss_pred             -HH----HHHHHHHHHHHHHHcC--CCCHHHH
Q 022407          192 -NR----ILMPMINEAFFTLYTG--VATKEDI  216 (297)
Q Consensus       192 -nr----i~~~~~~Ea~~l~~~g--~~~~~~i  216 (297)
                       ++    ++...++|+..+++.-  +++++.+
T Consensus       242 ~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~  273 (375)
T 1yj8_A          242 PTNSKSAIIRNGINEMILFGKVFFQKFNENIL  273 (375)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGG
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCCcchh
Confidence             11    2235678888888664  4665443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.52  E-value=3e-13  Score=119.69  Aligned_cols=189  Identities=15%  Similarity=0.093  Sum_probs=112.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||+.||..|+++|++|++|||++++++.+           .+.|... ....... .+..++++++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l-----------~~~g~~~-~~~~~~~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLI-----------NVSHTSP-YVEESKI-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHHSCBT-TBTTCCC-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHhCCcc-cCCCCee-eEEEeCCHHHhcCC
Confidence            699999999999999999999999999999999887765           2223100 0000001 35666776668899


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH---HHhhhcC--CCC-eEEEeecCCCCC--CCcceeEec
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---RLASATS--RPC-QVIGMHFMNPPP--LMKLVEVIR  157 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~l~~~~~--~~~-~~~g~h~~~p~~--~~~~vev~~  157 (297)
                      |+||.|+|. .. ..+++.++.+   +++++++.+.++++.   .+++.+.  .+. ..+...+..+..  ......++.
T Consensus        82 DvVil~vk~-~~-~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~  156 (335)
T 1z82_A           82 DILVIAIPV-QY-IREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL  156 (335)
T ss_dssp             EEEEECSCG-GG-HHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             CEEEEECCH-HH-HHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence            999999985 33 3445544433   566777666555432   2222211  011 111111111100  011112222


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchhh-----hH----------------H----HHHHHHHHHHHHHHHcCCCC
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAGF-----IV----------------N----RILMPMINEAFFTLYTGVAT  212 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~-----i~----------------n----ri~~~~~~Ea~~l~~~g~~~  212 (297)
                      +. .+   ++.+.++|...|..+++..|..+.     +.                +    .++...+.|+..+++..+++
T Consensus       157 g~-~~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~  232 (335)
T 1z82_A          157 AG-EN---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGAD  232 (335)
T ss_dssp             EE-TT---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             Ee-hh---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            21 12   778899999999888877765331     11                2    23346788999999887777


Q ss_pred             HHHH
Q 022407          213 KEDI  216 (297)
Q Consensus       213 ~~~i  216 (297)
                      ++.+
T Consensus       233 ~~~~  236 (335)
T 1z82_A          233 QKTF  236 (335)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.52  E-value=9.9e-14  Score=120.81  Aligned_cols=139  Identities=17%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +++|+||| +|.||.++|..|+++|++|++||++++.                                    +..+.++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            45899999 9999999999999999999999988641                                    0112357


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCC----CcceeEec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPL----MKLVEVIR  157 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~----~~~vev~~  157 (297)
                      +||+||.|+|...  ...++.++.+.++++++|+..++.-.  .+.+....  +.++++.||+.+|..    ...+.+++
T Consensus        65 ~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           65 NADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             TCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             CCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence            8999999999766  66788889888888887765443321  24454443  468999999765532    11233444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      +  .+++.++.+.++++.+|..++++.+
T Consensus       141 ~--~~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          141 G--RFPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             E--ECGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             C--CCHHHHHHHHHHHHHcCCEEEECCH
Confidence            4  2678899999999999999888754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.51  E-value=3.7e-14  Score=122.80  Aligned_cols=163  Identities=9%  Similarity=0.062  Sum_probs=106.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|||+|.||..+|..|+++|++|++||+++++++.+           ...+.. .   .....++. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~-~---~~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETD-G---SIFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTT-S---CEEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCC-C---ceeeeeee-ecCccccCCC
Confidence            489999999999999999999999999999997644321           111100 0   00001112 2344457899


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC----ccee
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM----KLVE  154 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~----~~ve  154 (297)
                      |+||.|+|...  ...++.++.+.++++++|++.++++.. +.+.+.++  . ++ |.+++     .| ...    +.+.
T Consensus        65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~~~  138 (291)
T 1ks9_A           65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGITH  138 (291)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCCEE
T ss_pred             CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccceE
Confidence            99999999765  467888898888888888777777766 35555443  2 33 43332     23 110    1122


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhH
Q 022407          155 VIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIV  191 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~  191 (297)
                      +... .++++.++.+.++|+.+|..+++.+|..+..+
T Consensus       139 i~~~-~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~  174 (291)
T 1ks9_A          139 IGPA-RQQDGDYSYLADILQTVLPDVAWHNNIRAELW  174 (291)
T ss_dssp             EEES-SGGGTTCTHHHHHHHTTSSCEEECTTHHHHHH
T ss_pred             EccC-CCCcchHHHHHHHHHhcCCCCeecHHHHHHHH
Confidence            2221 24567788899999999999888887655433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.49  E-value=4.1e-13  Score=118.64  Aligned_cols=193  Identities=15%  Similarity=0.130  Sum_probs=121.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec--Cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS--NLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~~~   81 (297)
                      |||+|||+|.||..+|..|+++|++|++||+  ++++++.+           .+.|....... . ..++..++  ++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~g~-~-~~~~~~~~~~~~~~   67 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI-----------SAGREHPRLGV-K-LNGVEIFWPEQLEK   67 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH-----------HTTCCBTTTTB-C-CCSEEEECGGGHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHH-----------HHhCcCcccCc-c-ccceEEecHHhHHH
Confidence            4899999999999999999999999999999  88877655           33332100000 0 13345555  5555


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---c---HHHHhhhcCC--CCeEEEeecCCCCCCC--
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---S---ITRLASATSR--PCQVIGMHFMNPPPLM--  150 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~---~~~l~~~~~~--~~~~~g~h~~~p~~~~--  150 (297)
                       ++++|+||.|+|...  ...++.++.+ ++++++|++.+.++   +   .+.+.+.++.  +..........|....  
T Consensus        68 ~~~~~D~vi~~v~~~~--~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~  144 (335)
T 1txg_A           68 CLENAEVVLLGVSTDG--VLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV  144 (335)
T ss_dssp             HHTTCSEEEECSCGGG--HHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred             HHhcCCEEEEcCChHH--HHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence             789999999999763  5677888888 88888888777666   2   2345444432  1100001111222110  


Q ss_pred             --cc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh---------------------hH-----HH----HHHH
Q 022407          151 --KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IV-----NR----ILMP  197 (297)
Q Consensus       151 --~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---------------------i~-----nr----i~~~  197 (297)
                        .. ..++.+. .+++.++.+.++|+..|..+++..|..+.                     +.     ++    ++..
T Consensus       145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~  223 (335)
T 1txg_A          145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATR  223 (335)
T ss_dssp             HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence              11 1233332 46788999999999999888877774321                     11     22    2345


Q ss_pred             HHHHHHHHHHcCCCCHHH
Q 022407          198 MINEAFFTLYTGVATKED  215 (297)
Q Consensus       198 ~~~Ea~~l~~~g~~~~~~  215 (297)
                      .++|+..+++.-++++++
T Consensus       224 ~~~E~~~la~~~G~~~~~  241 (335)
T 1txg_A          224 AINEMAELIEILGGDRET  241 (335)
T ss_dssp             HHHHHHHHHHHHTSCGGG
T ss_pred             HHHHHHHHHHHHCCCcch
Confidence            678998888765556544

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.49  E-value=7e-14  Score=115.97  Aligned_cols=147  Identities=22%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .++|+|||+|.||..+|..|+++|++|+++|+++++++.+           .+.|             +... +.++ ++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~-----------~~~g-------------~~~~-~~~~~~~   82 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARL-----------FPSA-------------AQVT-FQEEAVS   82 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHH-----------SBTT-------------SEEE-EHHHHTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcC-------------Ccee-cHHHHHh
Confidence            4689999999999999999999999999999998876554           1112             2333 4444 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHh----------hhcCCCCeEEEeecCCCCC-----
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA----------SATSRPCQVIGMHFMNPPP-----  148 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~----------~~~~~~~~~~g~h~~~p~~-----  148 (297)
                      ++|+||.|+|...  ...+++ +.+.. +++++++.+++.+.+.+.          +.++ ..+++..  +++..     
T Consensus        83 ~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~--~n~~~~~~~~  155 (215)
T 2vns_A           83 SPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKA--FNVISAWTLQ  155 (215)
T ss_dssp             SCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEE--CTTBCHHHHH
T ss_pred             CCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEec--cccccHhHhc
Confidence            9999999998643  334444 55555 678888888888765442          3343 2355542  12211     


Q ss_pred             --C--CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          149 --L--MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       149 --~--~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                        .  .+...++.+  ++++.++.++++++.+|.+++++++
T Consensus       156 ~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          156 AGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             TCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence              0  111123332  5789999999999999999999876

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.47  E-value=4.8e-13  Score=117.76  Aligned_cols=122  Identities=20%  Similarity=0.296  Sum_probs=87.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+....+            ....+++.+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence            589999999999999999999999 99999999998876544444433211            12346778788877999


Q ss_pred             CcEEEEec--cc------------CHHHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcC--CCCeEEEe
Q 022407           85 ADIIVEAI--VE------------SEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATS--RPCQVIGM  141 (297)
Q Consensus        85 aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~--~~~~~~g~  141 (297)
                      ||+||+++  |.            +..+++++++++.++++ ++++  +||++++. ..++....  .|.|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCP-NAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCC-CeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            34678899999999984 5544  56655543 33333222  34566654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.47  E-value=3e-13  Score=119.72  Aligned_cols=169  Identities=16%  Similarity=0.243  Sum_probs=109.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      .+||+|||+|.||..+|..|+++|++|++|+++ +..+.+           .+.|............++..+++++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQAL-----------QTAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHH-----------HHTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHH-----------HHCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            468999999999999999999999999999995 444443           33332110000011123455667777889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-------------------H-HHHhhhcCCCCeEE-Eeec
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-------------------I-TRLASATSRPCQVI-GMHF  143 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-------------------~-~~l~~~~~~~~~~~-g~h~  143 (297)
                      +|+||.|+|.. . ...+++++.+.++++++|++.+.+++                   . +.+.+.++. .+++ +..+
T Consensus        71 ~D~Vilavk~~-~-~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVKAP-A-LESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCCHH-H-HHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEEC
T ss_pred             CCEEEEeCCch-h-HHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEE
Confidence            99999999863 3 45777888888888999988888853                   2 245555543 3443 3322


Q ss_pred             CC----CCCCCc---ceeEecC--CCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407          144 MN----PPPLMK---LVEVIRG--ADTSDETFRATKALAERFGKTVVCSQDYAG  188 (297)
Q Consensus       144 ~~----p~~~~~---~vev~~~--~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g  188 (297)
                      ..    .|....   .-.+..|  ...+.+..+.+.++|...|..+.+..|..+
T Consensus       148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence            21    111100   0112222  223456778888999999998888777655

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.46  E-value=1.4e-13  Score=133.13  Aligned_cols=89  Identities=25%  Similarity=0.390  Sum_probs=83.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022407          187 AGFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP  262 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~  262 (297)
                      .+.+.+|++.+++||+++++++|++ +++|||.++.+|+|||.   |||+|+|.+|++.++..++.+++.+++ +|+|++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~-~~~p~~  702 (725)
T 2wtb_A          624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGE-FFKPCA  702 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCG-GGCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CCCCCH
Confidence            3579999999999999999999998 79999999999999999   999999999999999999999999996 799999


Q ss_pred             HHHHHHHcCCCCcccCCcccc
Q 022407          263 LLVQYVDAGRLGKKRGIGVFD  283 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy~  283 (297)
                      +|++|+++|       ++||.
T Consensus       703 ~l~~~~~~g-------~~f~~  716 (725)
T 2wtb_A          703 FLAERGSKG-------VLLSA  716 (725)
T ss_dssp             HHHHHHHHT-------CCSSS
T ss_pred             HHHHHHHcC-------CCccc
Confidence            999999876       57985

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.46  E-value=1.9e-13  Score=120.57  Aligned_cols=128  Identities=16%  Similarity=0.263  Sum_probs=89.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |....+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+.+..+   +         ...+++.++|+
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~   72 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSY   72 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCH
Confidence            33344799999999999999999999999 99999999988877544444443211   1         23457778888


Q ss_pred             c-cccCCcEEEEec--ccCH-----------------HHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcC-CCC
Q 022407           80 K-DLHSADIIVEAI--VESE-----------------DVKKKLFSELDKITKASAIL--ASNTSSISITRLASATS-RPC  136 (297)
Q Consensus        80 ~-~~~~aD~Vi~~v--~e~~-----------------~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~-~~~  136 (297)
                      + ++++||+||+++  |++.                 .+++++++++.+++ +++++  .||++++....+.+... .+.
T Consensus        73 ~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~t~~~~~~~~~~~~  151 (331)
T 1pzg_A           73 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCMVKVMCEASGVPTN  151 (331)
T ss_dssp             HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGG
T ss_pred             HHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHHHHHHHHhcCCChh
Confidence            8 599999999998  6543                 34788899999998 56555  45555443222223322 345


Q ss_pred             eEEEe
Q 022407          137 QVIGM  141 (297)
Q Consensus       137 ~~~g~  141 (297)
                      |++|+
T Consensus       152 rviG~  156 (331)
T 1pzg_A          152 MICGM  156 (331)
T ss_dssp             GEEEC
T ss_pred             cEEec
Confidence            66665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.45  E-value=1.8e-13  Score=132.21  Aligned_cols=88  Identities=26%  Similarity=0.466  Sum_probs=81.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcH
Q 022407          187 AGFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCP  262 (297)
Q Consensus       187 ~g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~  262 (297)
                      .+.+.+|++.+++||+++++++|++ +++|||.++.+|+|||.   |||+|+|.+|++.++..++.+ +.+++ +|+|++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~-~~~p~~  701 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGA-LYHPTA  701 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCG-GGCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCC-CCCCCH
Confidence            3569999999999999999999998 79999999999999999   999999999999999999999 88885 899999


Q ss_pred             HHHHHHHcCCCCcccCCcccc
Q 022407          263 LLVQYVDAGRLGKKRGIGVFD  283 (297)
Q Consensus       263 ~l~~~~~~g~~G~~~g~Gfy~  283 (297)
                      +|++|+++|       ++||.
T Consensus       702 ~l~~~~~~g-------~~f~~  715 (715)
T 1wdk_A          702 KLREMAKNG-------QSFFG  715 (715)
T ss_dssp             HHHHHHHTT-------CCSCC
T ss_pred             HHHHHHHcC-------CCCCC
Confidence            999999887       57883

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.45  E-value=1.9e-12  Score=113.41  Aligned_cols=174  Identities=11%  Similarity=0.123  Sum_probs=112.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||+.+|..|+++|++|++|+|++  .+.+           .+.|.... .........+..+++.++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i-----------~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAI-----------AGNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHH-----------HHTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHH-----------HhCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999985  2333           23332100 000000113345566666889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEE-eec-----CCCCCC---Cc-ce
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIG-MHF-----MNPPPL---MK-LV  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g-~h~-----~~p~~~---~~-~v  153 (297)
                      +|+||.|++...  ...+++++.+.++++++|++...++.. +.+.+.++. .+++. +.+     ..|-..   .+ .+
T Consensus        70 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            999999998654  447888899999999999999999975 566666643 23333 221     112111   01 12


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHH
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL  195 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~  195 (297)
                      .+-.....+.+..+.+.++|...|....+..|..+..+..++
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~  188 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLV  188 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHH
Confidence            222223344567788899999999988888887654444433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.43  E-value=1e-12  Score=115.37  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=87.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|||+|.||.++|..|+..|+ +|.++|+++++++.....+++.+...            ....+++.++++++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~   71 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA------------YSNCKVSGSNTYDDLA   71 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH------------TCCCCEEEECCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc------------CCCcEEEECCCHHHhC
Confidence            4699999999999999999999999 99999999988876555444433211            1224577778887799


Q ss_pred             CCcEEEEec--ccCH-----------------HHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcC--CCCeEEE
Q 022407           84 SADIIVEAI--VESE-----------------DVKKKLFSELDKITKASAIL--ASNTSSISITRLASATS--RPCQVIG  140 (297)
Q Consensus        84 ~aD~Vi~~v--~e~~-----------------~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~--~~~~~~g  140 (297)
                      +||+||+++  |++.                 .+++++++++.++++ ++++  +||++++. ..++....  .+.|++|
T Consensus        72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG  149 (322)
T 1t2d_A           72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG  149 (322)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred             CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence            999999998  5432                 368889999999984 5544  46655544 33333222  3455555


Q ss_pred             e
Q 022407          141 M  141 (297)
Q Consensus       141 ~  141 (297)
                      +
T Consensus       150 ~  150 (322)
T 1t2d_A          150 L  150 (322)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.42  E-value=2e-12  Score=113.66  Aligned_cols=168  Identities=19%  Similarity=0.223  Sum_probs=110.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCh-hhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQ-LSQ-AMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||+.+|..|+++|++|++|+|++  .+.+           .+.|. +.. ...+.....+..+++.+++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i-----------~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETV-----------KAKGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHH-----------HHHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHH-----------HhCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            689999999999999999999999999999986  2333           22231 000 00000111244566777754


Q ss_pred             -CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--cce
Q 022407           84 -SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM--KLV  153 (297)
Q Consensus        84 -~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~--~~v  153 (297)
                       ++|+||.|+|...  ...+++++.+.++++++|++.+.++.. +.+.+.++.. +++ |..+.     .|-.+.  ..-
T Consensus        70 ~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~  146 (320)
T 3i83_A           70 TKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYG  146 (320)
T ss_dssp             SCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCC
Confidence             8999999998765  346778888888889988888999875 6677766543 333 33222     121111  011


Q ss_pred             eEecC--CCChHHHHHHHHHHHHHhCCeEEEeccchhh
Q 022407          154 EVIRG--ADTSDETFRATKALAERFGKTVVCSQDYAGF  189 (297)
Q Consensus       154 ev~~~--~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~  189 (297)
                      .+..+  ...+.+..+.+.++|...|..+.+..|..+.
T Consensus       147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~  184 (320)
T 3i83_A          147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTA  184 (320)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHH
Confidence            22222  2344567788899999999988888876554

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.02  E-value=9.4e-14  Score=113.88  Aligned_cols=147  Identities=16%  Similarity=0.205  Sum_probs=97.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   84 (297)
                      ++|+|||+|.||..+|..|.++|++|++||++++ .+.+           .+.|             +... +.+ .+++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g-------------~~~~-~~~~~~~~   73 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSL-----------LPRG-------------AEVL-CYSEAASR   73 (201)
Confidence            5899999999999999999999999999999876 3222           1112             1223 343 3788


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--------HHHhhhcCCCCeEEEeecCCCCCCCc--ce-
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--------TRLASATSRPCQVIGMHFMNPPPLMK--LV-  153 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~l~~~~~~~~~~~g~h~~~p~~~~~--~v-  153 (297)
                      +|+||.++|.. .+ +.++ ++... .++++|++.+++++.        +.+.+.++. .+++...+..|.....  .+ 
T Consensus        74 aDvVilav~~~-~~-~~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~  148 (201)
T 2yjz_A           74 SDVIVLAVHRE-HY-DFLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD  148 (201)
Confidence            99999999864 33 3444 44443 356777777777752        344444432 3444443333332221  11 


Q ss_pred             ----eEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          154 ----EVIRGADTSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       154 ----ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                          .++.+  .+++.++.+.++|+.+|++++++++
T Consensus       149 g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          149 ASRQVFVCG--NDSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence                23443  4688899999999999999998876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.32  E-value=1.4e-11  Score=109.84  Aligned_cols=114  Identities=17%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhh-cccCCce-EEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMG-TDAPRRL-RCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i-~~~~~   78 (297)
                      |++ .+||+|||+|.||..+|..|+++|++|++||+++++++.+.           +.+.+.-... .....++ ..+++
T Consensus         1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~   68 (359)
T 1bg6_A            1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-----------DRGAIIAEGPGLAGTAHPDLLTSD   68 (359)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HHTSEEEESSSCCEEECCSEEESC
T ss_pred             CCC-cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------hcCCeEEeccccccccccceecCC
Confidence            433 36999999999999999999999999999999998877652           2211100000 0001122 34566


Q ss_pred             ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-CccHHHH
Q 022407           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-SISITRL  128 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~~~~~~l  128 (297)
                      +++ ++++|+||.|+|....  ..++.++.+.++++++|++..+ +....++
T Consensus        69 ~~~~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~  118 (359)
T 1bg6_A           69 IGLAVKDADVILIVVPAIHH--ASIAANIASYISEGQLIILNPGATGGALEF  118 (359)
T ss_dssp             HHHHHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESSCCSSHHHHH
T ss_pred             HHHHHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcCCCchHHHHH
Confidence            666 7899999999998764  5778888888888887665533 4343333

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.32  E-value=5.6e-12  Score=109.54  Aligned_cols=118  Identities=16%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++||+|||+|.||.++|..++..|+  +|.++|++++....+.+.. +     .            ...+++.++|++++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~-~-----~------------~~~~i~~t~d~~~l   75 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE-I-----F------------NLPNVEISKDLSAS   75 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH-H-----H------------TCTTEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh-h-----h------------cCCCeEEeCCHHHH
Confidence            4799999999999999999999999  9999999986222221111 0     0            01256777888889


Q ss_pred             cCCcEEEEec-------------ccCHHHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcCC-CCeEEEe
Q 022407           83 HSADIIVEAI-------------VESEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATSR-PCQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v-------------~e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~~-~~~~~g~  141 (297)
                      ++||+||+++             .++..++++++.++.+++ +++++  +||++.+-...+.+.... +.|++|+
T Consensus        76 ~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           76 AHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             TTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            9999999997             888889999999999998 55554  466444333333333222 3566665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.31  E-value=3.3e-11  Score=105.77  Aligned_cols=141  Identities=21%  Similarity=0.320  Sum_probs=91.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+.+|+  +|+++|+++++++.....+.+.+.    ..         ...++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~----~~---------~~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP----FT---------RRANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----GS---------CCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh----hc---------CCcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999887765433332211    00         1123444 3566789


Q ss_pred             CCcEEEEecccCH--------------HHHHHHHHHHHhhccCCeEEeecCCCccH-HHHh-hhcC-CCCeEEEeecCCC
Q 022407           84 SADIIVEAIVESE--------------DVKKKLFSELDKITKASAILASNTSSISI-TRLA-SATS-RPCQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~-~~~~-~~~~~~g~h~~~p  146 (297)
                      +||+||++++...              .+++.+++.+.++++ +++++..|.+... +.+. +... .+.|++|+     
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~-----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS-----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC-----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHHHHHHHHHhCCChhhEEee-----
Confidence            9999999998532              356788888988875 5544323333333 3333 2222 34556554     


Q ss_pred             CCCCcceeEecCCCChHHHHHHHHHHHHHhCCe
Q 022407          147 PPLMKLVEVIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~  179 (297)
                                   .|..+.......+.+.+|..
T Consensus       141 -------------~t~ld~~r~~~~la~~lgv~  160 (319)
T 1a5z_A          141 -------------GTVLDTARLRTLIAQHCGFS  160 (319)
T ss_dssp             -------------TTHHHHHHHHHHHHHHHTCC
T ss_pred             -------------CccHHHHHHHHHHHHHhCcC
Confidence                         35555555555566677754

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.30  E-value=1.4e-11  Score=111.42  Aligned_cols=153  Identities=15%  Similarity=0.163  Sum_probs=108.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD------GLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ++|+|||+|.||.++|..|.++      |++|++.+++.+ ..+.+           .+.|....       .  ....+
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~-------d--~ta~s  114 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE-------S--GTLGD  114 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT-------T--TCEEE
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe-------c--CCCCC
Confidence            7999999999999999999999      999998776543 23332           34453210       0  01134


Q ss_pred             ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhh---hcCCCCeEEEeecCCCCCC-----
Q 022407           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRPCQVIGMHFMNPPPL-----  149 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~~~~~g~h~~~p~~~-----  149 (297)
                      .++ +++||+||.++|....  ..++.++.+.++++++| +-..++.+..+.+   .++....++.++|..|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            444 8899999999997554  35788899999999985 5778888877664   3444468999999888764     


Q ss_pred             --------Ccce-eEecCCCChHHHHHHHHHHHHHhCCeEE
Q 022407          150 --------MKLV-EVIRGADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       150 --------~~~v-ev~~~~~~~~~~~~~~~~l~~~lG~~~v  181 (297)
                              .+.. -+..+...+.+..+.+..++..+|...+
T Consensus       192 ~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence                    1121 2333334566789999999999999743

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.29  E-value=2.3e-11  Score=106.26  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=72.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.||.++|..|+..|+ +|.++|+++++++.....+.+...            ......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 999999998877643222221110            0112345677788877999


Q ss_pred             CcEEEEec--------------ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           85 ADIIVEAI--------------VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ||+||+++              .++..+++++++.+.+++ ++++++
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi  116 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVII  116 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Confidence            99999997              333466778888899887 565543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.24  E-value=7.6e-11  Score=102.73  Aligned_cols=120  Identities=23%  Similarity=0.328  Sum_probs=78.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+..|+  +|+++|+++++++.....        ...+.  +  . ....+++. ++.++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~--------l~~~~--~--~-~~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAED--------IAHAA--P--V-SHGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HTTSC--C--T-TSCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHh--------hhhhh--h--h-cCCeEEEE-CCHHHhC
Confidence            489999999999999999999999  999999998766532111        11111  0  0 01123443 5667799


Q ss_pred             CCcEEEEec--cc------------CHHHHHHHHHHHHhhccCCeEE--eecCCCccHHHHhhhcCCCCeEEEe
Q 022407           84 SADIIVEAI--VE------------SEDVKKKLFSELDKITKASAIL--ASNTSSISITRLASATSRPCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~~~l~~~~~~~~~~~g~  141 (297)
                      +||+||+++  |.            +..+++++++++.+++ +++++  +||++.+....+.+.. .+.|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999998  32            3346788888899986 55544  3554444334444443 45566554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=99.21  E-value=1.6e-10  Score=100.81  Aligned_cols=110  Identities=23%  Similarity=0.244  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD--PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |....+||+|||+|.||.++|..++..|+ +|+++|++  +++++.....+.+...            ......+++.++
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~------------~~~~~~~i~~t~   71 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASP------------VQGFDANIIGTS   71 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHH------------HHTCCCCEEEES
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhh------------hccCCCEEEEcC
Confidence            54456799999999999999999999999 99999999  5554433222222210            111234567778


Q ss_pred             CcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           78 NLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +++++++||+||++...              +..+.+.+...+.++++ +++++.-|...
T Consensus        72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvvsNPv  130 (315)
T 3tl2_A           72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIVVLTNPV  130 (315)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSSH
T ss_pred             CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEECCChH
Confidence            88889999999998721              12244556666778775 55444344433

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.20  E-value=2.3e-11  Score=107.81  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..+. ..|++|.+||++++..+..           .+.|.             ...+++++ ++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-----------KALGA-------------ERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-----------HHHTC-------------EECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-----------hhcCc-------------EEeCCHHHHhc
Confidence            68999999999999999999 9999999999987654432           11121             34446665 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecCCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFMNP  146 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~~p  146 (297)
                      +||+|+.++|...+.+..+.+++.+.++++++++..+++  ...+.+.+.+... ....++++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987765444434555678889888743333  2335677766542 23367888874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.18  E-value=2.2e-11  Score=107.31  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||+++++.+..           .+.|             +... ++++ +++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~-~l~e~l~~  210 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-----------AEFQ-------------AEFV-STPELAAQ  210 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-----------HTTT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-----------HhcC-------------ceeC-CHHHHHhh
Confidence            689999999999999999999999999999987644332           1112             2333 5655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCC-CCeEEEeecCCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSR-PCQVIGMHFMNPP  147 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~~~~g~h~~~p~  147 (297)
                      ||+|+.++|...+.+..+.+++.+.++++++++..+++  ...+.+.+.+.. .....++++|.+.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            99999999987654433334555677888888744333  233566665532 2345778887754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.18  E-value=2.4e-10  Score=99.89  Aligned_cols=121  Identities=15%  Similarity=0.274  Sum_probs=78.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      +||+|||+|.||.++|..|+.+|  ++|++||+++++++.....+.+...       .       ....+.. +++++++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~-------~-------~~~~~~~~~~d~~~~   67 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-------N-------LEAHGNIVINDWAAL   67 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-------G-------SSSCCEEEESCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh-------h-------cCCCeEEEeCCHHHh
Confidence            58999999999999999999999  7999999999887665433221110       0       0011233 4667669


Q ss_pred             cCCcEEEEecccCH------------------HHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhc-C-CCCeEEEe
Q 022407           83 HSADIIVEAIVESE------------------DVKKKLFSELDKITKASAILASNTSSISI-TRLASAT-S-RPCQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~------------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~-~-~~~~~~g~  141 (297)
                      ++||+||.+++...                  .+.+++++++.++++ +++++..|.+..+ ..+.... . .+.+++|+
T Consensus        68 ~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~  146 (309)
T 1hyh_A           68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (309)
T ss_dssp             TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEeec
Confidence            99999999998644                  235677888888775 5544434444433 2233221 1 23466665

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.17  E-value=5.6e-11  Score=107.76  Aligned_cols=106  Identities=17%  Similarity=0.306  Sum_probs=76.2

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCCCC-h-----hhhcccCCceE-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWLVD---TDPDALVRATKSISSSIQKFVSKGQLS-Q-----AMGTDAPRRLR-   74 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d---~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-----~~~~~~~~~i~-   74 (297)
                      +||+|||+|.||..+|..|++ +|++|++||   +++++++.+           .+.+.+. .     .+......++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~   71 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKA-----------LGADELTVIVNEKDGTQTEVKSRPKV   71 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHH-----------HTTSCEEEEEECSSSCEEEEEECCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHH-----------HhhccceeeeecCCCccceeeccceE
Confidence            689999999999999999998 599999999   777766553           2221100 0     00001112333 


Q ss_pred             EecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           75 CTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++++ +++||+||+|+|...  ...+++++.++++++++|++++++..
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence            5667765 789999999999766  57888999999988999988655554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.15  E-value=2.2e-10  Score=99.99  Aligned_cols=115  Identities=16%  Similarity=0.148  Sum_probs=76.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +||+|||+|.||+.+|..|+ +|++|++|+|++++++.+           .+.|.............+..  +.+....+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l-----------~~~G~~~~~~~~~~~~~~~~--~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAI-----------QSEGIRLYKGGEEFRADCSA--DTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHH-----------HHHCEEEEETTEEEEECCEE--ESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHH-----------HhCCceEecCCCeecccccc--cccccCCC
Confidence            68999999999999999999 999999999998877665           22332100000000011111  12236789


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH-HHhhhcCCCCeEE
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT-RLASATSRPCQVI  139 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~-~l~~~~~~~~~~~  139 (297)
                      |+||.|++...  ...++..+.+. ++++ |++...++... .+.+.++. .+++
T Consensus        69 D~vilavK~~~--~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl  118 (307)
T 3ego_A           69 DLLVVTVKQHQ--LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIY  118 (307)
T ss_dssp             SEEEECCCGGG--HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEE
T ss_pred             CEEEEEeCHHH--HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEE
Confidence            99999997543  45666777665 5677 78889999885 55555443 3443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=99.14  E-value=4.7e-10  Score=97.99  Aligned_cols=105  Identities=15%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+||+|||+|.||.++|..++..|+  +|.++|+++++++.....+.+...    .         ....++..++++++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~----~---------~~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL----F---------LHTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG----G---------SCCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh----c---------ccCCeEEEcCCHHH
Confidence            35799999999999999999999997  999999999877654333333210    0         12345667788989


Q ss_pred             ccCCcEEEEec--------------ccCHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           82 LHSADIIVEAI--------------VESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        82 ~~~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      +++||+||.+.              ..+..+++++..++.++++ +++++.-|..
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P-~a~ilvvtNP  140 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP-DCLKELHPEL  140 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCT-TCEEEECSSS
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CceEEeCCCc
Confidence            99999999874              3344567788888999864 5544433433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.13  E-value=5.7e-10  Score=97.47  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=69.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.||.++|..|+..  |++|++||+++++++.....+.+....            .....++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~------------~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV------------GLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhc------------ccCCcEEEECCCHHHHC
Confidence            4899999999999999999985  899999999998777432211111100            01123566778888899


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEE
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      +||+||++++..              ..+.+.+.+.+.+++++..++
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~vi  115 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII  115 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            999999999642              133456667788886544433

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.12  E-value=2.6e-11  Score=105.27  Aligned_cols=166  Identities=11%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-cC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-HS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~   84 (297)
                      +||+|||+|.||..+|..|+++|++|++|+|+++.++..           ...|.        ....+. .++.+.+ .+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~--------~~~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHA--------PAQDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTS--------CCEEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCe--------ecccee-cCchHhcCCC
Confidence            589999999999999999999999999999996543210           01111        011121 2233444 78


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEe-e-----cCCCCCCC-cceeEec
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGM-H-----FMNPPPLM-KLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~-h-----~~~p~~~~-~~vev~~  157 (297)
                      +|+||.|++...  ...+++++.+.++++++|++...++...+.   ++. .++++. .     ...|-... ....+..
T Consensus        63 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVKTHQ--LDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSCGGG--HHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCCccC--HHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998653  557888888889889999989999887544   332 233322 1     11221110 0011211


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHH-HH
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPM-IN  200 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~-~~  200 (297)
                         .+.+..+.+.++|..-|.+..+..|..+..+..++... +|
T Consensus       137 ---~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~in  177 (294)
T 3g17_A          137 ---QDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGIN  177 (294)
T ss_dssp             ---ECSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ---CccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHH
Confidence               13456677788888888888888887776555555433 44

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.11  E-value=6.7e-11  Score=104.39  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++. +..           .+.|.             .. .++++ +++
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~-~~l~~~l~~  204 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-----------RELNA-------------EF-KPLEDLLRE  204 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-----------HHHCC-------------EE-CCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-----------hhcCc-------------cc-CCHHHHHhh
Confidence            68999999999999999999999999999999875 322           11221             23 35655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEeecCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMNP  146 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~p  146 (297)
                      ||+|+.++|...+.+..+.+++.+.++++++++..+.+..+  ..+.+.+.. +-...+++++++
T Consensus       205 aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~  269 (334)
T 2dbq_A          205 SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE  269 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred             CCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence            99999999987754433334555677888888744433322  356665532 233477888873

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.11  E-value=2.1e-11  Score=107.25  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=79.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++..+                |             .....++++ +++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            6899999999999999999999999999999865310                1             134456666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+..+-++..+.++++++++..+.+..+  ..+.+.+.. ..+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999987654333323444567888888744444332  566666643 34567888887

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=99.11  E-value=4.4e-10  Score=97.95  Aligned_cols=96  Identities=18%  Similarity=0.368  Sum_probs=70.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ||+|||+|.||.++|..++..|+ +|.++|+++++++.....+.+....   .+         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999998888 7999999988776533332222110   01         12346666788789999


Q ss_pred             cEEEEec--------------ccCHHHHHHHHHHHHhhccCCeE
Q 022407           86 DIIVEAI--------------VESEDVKKKLFSELDKITKASAI  115 (297)
Q Consensus        86 D~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~i  115 (297)
                      |+||++.              ..+..+++++.+++.+++ ++++
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~  111 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAI  111 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCE
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeE
Confidence            9999993              445566888888899987 4553

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.10  E-value=7.4e-11  Score=103.97  Aligned_cols=112  Identities=17%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++. +..           .+.|             +... ++++ +++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-----------KELK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-----------HHHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-----------hhcC-------------ceec-CHHHHHhh
Confidence            68999999999999999999999999999999875 222           1112             1233 5655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+..+.+++.+.++++ +++ |++.-.+   ..+.+.+.. .....+++++.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili-n~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLV-NIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE-ECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE-ECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999988554433333445567778 665 4443332   345666543 24558889887

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.09  E-value=1.1e-09  Score=95.98  Aligned_cols=107  Identities=19%  Similarity=0.273  Sum_probs=74.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ++||+|||+|.||..+|..|+.+|+  +|+++|+++++++.....+.        .+..    .. ...++..+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~--------~~~~----~~-~~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQ--------HGSS----FY-PTVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHH--------HTGG----GS-TTCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHH--------hhhh----hc-CCeEEEeCCCHHHh
Confidence            4799999999999999999999999  99999999876652111111        1110    00 01234455566778


Q ss_pred             cCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++||+||.++..              +..+.+.++.++.++ .++++|++.+.++..
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~  129 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI  129 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence            999999999932              124555778888886 567777767777665

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=99.08  E-value=3.8e-10  Score=98.80  Aligned_cols=103  Identities=14%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCC-CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEE-KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~-~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.. .++||+|||+|.||.++|..++..|.  +|.++|+++++++.....+.+.       ....     ....+++ .+
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~-------~~~~-----~~~~~i~-~~   67 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG-------KVFA-----PKPVDIW-HG   67 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH-------TTSS-----SSCCEEE-EC
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH-------hhhc-----CCCeEEE-cC
Confidence            643 45799999999999999999988775  8999999987555322222211       0000     0012233 34


Q ss_pred             CcccccCCcEEEEecc--------------cCHHHHHHHHHHHHhhccCCeEE
Q 022407           78 NLKDLHSADIIVEAIV--------------ESEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~--------------e~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                      +.+++++||+||++.+              ++..+++++.+.+.+++++..++
T Consensus        68 ~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~i  120 (316)
T 1ldn_A           68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL  120 (316)
T ss_dssp             CGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred             cHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEE
Confidence            5667999999999953              33467888888999987544333

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=99.08  E-value=7.2e-10  Score=96.96  Aligned_cols=105  Identities=20%  Similarity=0.281  Sum_probs=71.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||.++|..|+..|+ +|.++|+++++++.....+.+....            .....+++.++++++++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~------------~~~~~~v~~t~d~~a~~   72 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPI------------EGVDFKVRGTNDYKDLE   72 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCCEEEESCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhh------------cCCCcEEEEcCCHHHHC
Confidence            4799999999999999999999998 9999999998765432222221110            00123455567788899


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      +||+||.+...              +..+.+.+...+.++++ +++++.-|..
T Consensus        73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vivvtNP  124 (321)
T 3p7m_A           73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCP-NAFVICITNP  124 (321)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSS
T ss_pred             CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCC-CcEEEEecCc
Confidence            99999998632              22345566667888874 5544433433

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=99.08  E-value=9.3e-10  Score=96.29  Aligned_cols=106  Identities=19%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+.... .  +         ...++..++++++++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~v~~t~d~~a~~   74 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-D--G---------FDAKFTGANDYAAIE   74 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-H--T---------CCCCEEEESSGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-c--C---------CCCEEEEeCCHHHHC
Confidence            4699999999999999999999999 9999999998876443333332211 1  0         123456677888899


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +||+||.+...              +..+.+++...+.+++ ++++++.-|...
T Consensus        75 ~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPv  127 (324)
T 3gvi_A           75 GADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPL  127 (324)
T ss_dssp             TCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             CCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCc
Confidence            99999998631              1234455666677887 455544334333

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.01  E-value=1.1e-10  Score=100.60  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++..+.                             ....+++++ +++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998653110                             234556766 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcC-CCCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATS-RPCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~-~~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+..+..+.++++++++..+.+-.  ...+.+.+. ......++..|.
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~  237 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWW  237 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeecccc
Confidence            9999999997665443333556677888888874333322  356666653 233455666654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.00  E-value=1.5e-09  Score=95.06  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=76.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..+...|++|++||+ +++.. .+           .+.|.             ...+++++ ++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~~g~-------------~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DE-----------ASYQA-------------TFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HH-----------HHHTC-------------EECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hh-----------hhcCc-------------EEcCCHHHHHh
Confidence            6899999999999999999999999999999 87652 22           12232             23445655 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      .||+|+.++|...+...-+-++..+.++++++++..+++  +....+.+.+... ..-.++.++
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~  265 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVF  265 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            999999999976543322223455677888888754444  2334566655322 222345555

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.99  E-value=1.2e-09  Score=96.00  Aligned_cols=111  Identities=16%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++..                .+             .....++++ ++.
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHhc
Confidence            689999999999999999999999999999986520                01             134456666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+... ....++..|.
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~  286 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV  286 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCS
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence            99999999977665544445666678888888744433222  4566666432 3345565554

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.97  E-value=4.3e-09  Score=90.89  Aligned_cols=106  Identities=17%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.||.++|..|+..|+  +|.+||+++++++.....+.+....   ..         ...+++.++|.++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---ID---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---TT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhh---cC---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  9999999998866332222222110   00         123466667777799


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +||+||.+...+              ..+.+.+...+.++++ +++++.-|....
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~iivvsNPvd  122 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMD  122 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHH
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcch
Confidence            999999986321              1233444555777754 555543444433

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.97  E-value=7.6e-09  Score=94.84  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=56.0

Q ss_pred             CcEEEEECCChhH--HHHHHHHHHC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMG--SGIAQLGVMD----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG--~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.||  .++|..|++.    |++|++||+++++++........    +.....        ...+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~----~l~~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK----YVEEVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH----HHHHTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHH----HhccCC--------CCcEEEEECC
Confidence            3699999999985  5556677754    89999999999988775443322    222111        1356778888


Q ss_pred             c-ccccCCcEEEEecc
Q 022407           79 L-KDLHSADIIVEAIV   93 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v~   93 (297)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            8 45999999999995

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.96  E-value=7.9e-09  Score=94.76  Aligned_cols=78  Identities=17%  Similarity=0.188  Sum_probs=56.4

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.. |.++|..|+..     +++|.+||+++++++......+..++   ..+         ...+++.++|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~---~~~---------~~~~I~~t~D   95 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIR---EKA---------PDIEFAATTD   95 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHH---HHC---------TTSEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhc---cCC---------CCCEEEEECC
Confidence            369999999998 66688888887     67999999999988775322221111   111         1245677788


Q ss_pred             c-ccccCCcEEEEeccc
Q 022407           79 L-KDLHSADIIVEAIVE   94 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v~e   94 (297)
                      + +++++||+||.+++.
T Consensus        96 ~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           96 PEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             HHHHHSSCSEEEECCCT
T ss_pred             HHHHHcCCCEEEEcCCC
Confidence            7 458999999999975

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.94  E-value=3.5e-09  Score=92.69  Aligned_cols=109  Identities=17%  Similarity=0.291  Sum_probs=71.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE-Eec
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR-CTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~   77 (297)
                      |.+..+||+|||+|.||.++|..|+..|+  +|.++|+++++++.....+.+....              ....++ .++
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~--------------~~~~v~i~~~   66 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAF--------------APQPVKTSYG   66 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGG--------------SSSCCEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccc--------------ccCCeEEEeC
Confidence            76667899999999999999999999997  8999999998776543333322100              001122 345


Q ss_pred             CcccccCCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           78 NLKDLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++++||+||.+...+              ..+.+.+...+.++++ +++++.-|....
T Consensus        67 ~~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvtNPvd  126 (326)
T 3pqe_A           67 TYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVATNPVD  126 (326)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHH
T ss_pred             cHHHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcCChHH
Confidence            677799999999987321              1223445555777765 555543444333

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.94  E-value=5.1e-09  Score=95.24  Aligned_cols=77  Identities=23%  Similarity=0.298  Sum_probs=56.5

Q ss_pred             CCCCCcEEEEECCChh--HHHHHHHHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            1 MEEKMKVMGVVGSGQM--GSGIAQLGVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         1 M~~~~~~V~iiG~G~m--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      |..+.+||+|||+|.|  |.+++..|+.    .| +|++||+++++++..... .+         .+..     ...+++
T Consensus         1 m~m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~-~~---------~l~~-----~~~~I~   64 (450)
T 3fef_A            1 MSLDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVI-GN---------HSGN-----GRWRYE   64 (450)
T ss_dssp             --CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHH-HT---------TSTT-----SCEEEE
T ss_pred             CCCCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHH-HH---------HHhc-----cCCeEE
Confidence            5444479999999998  5789988886    67 999999999887765221 11         1110     345678


Q ss_pred             EecCccc-ccCCcEEEEecc
Q 022407           75 CTSNLKD-LHSADIIVEAIV   93 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v~   93 (297)
                      .++|+++ +++||+||++++
T Consensus        65 ~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A           65 AVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             EESSHHHHHTTCSEEEECCC
T ss_pred             EECCHHHHhcCCCEEEeccc
Confidence            8899875 899999999995

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.91  E-value=5.6e-09  Score=92.03  Aligned_cols=112  Identities=20%  Similarity=0.200  Sum_probs=76.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|..||+++...+..             .|             ....+++++ ++.
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence            689999999999999999999999999999986432221             12             134557776 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---cHHHHhhhcCCC-CeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++ |++.-   ....+.+.+... -...++..|
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gA~LDVf  290 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVI-NISRGDLINDDALIEALRSKHLFAAGLDVF  290 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEE-ECCCCchhCHHHHHHHHHhCCceEEEecCC
Confidence            999999999766544333345556778898887 44432   235666666432 223344444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.91  E-value=5.4e-09  Score=97.71  Aligned_cols=149  Identities=22%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||.++|..|...|++|++||++... +.+           .+.|.             ... ++++ ++.
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g~-------------~~~-~l~e~~~~  196 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARA-----------AQLGI-------------ELL-SLDDLLAR  196 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHH-----------HHHTC-------------EEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcCc-------------EEc-CHHHHHhc
Confidence            68999999999999999999999999999998642 222           22232             223 5555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEEeecCC--CCCCCc-----cee
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN--PPPLMK-----LVE  154 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~--p~~~~~-----~ve  154 (297)
                      ||+|+.|+|...+.+.-+-+++.+.++++++++..+.+-.+  ..+.+.+... ....+..+|.  |+...+     .+-
T Consensus       197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi  276 (529)
T 1ygy_A          197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV  276 (529)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence            99999999977443332223355668888888754443333  3455555321 1223444443  222222     355


Q ss_pred             EecCCC-ChHHHHHH-----HHHHHHHhCCeE
Q 022407          155 VIRGAD-TSDETFRA-----TKALAERFGKTV  180 (297)
Q Consensus       155 v~~~~~-~~~~~~~~-----~~~l~~~lG~~~  180 (297)
                      +.++.+ .++++.++     +..+...++..+
T Consensus       277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            667766 67777665     566777676544

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.90  E-value=2.9e-09  Score=95.03  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--------cEEEEeCCHHHHH-HHHHHHHHHHHHHHHcC-CCChhhhcccCCceEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--------DVWLVDTDPDALV-RATKSISSSIQKFVSKG-QLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--------~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~   75 (297)
                      .||+|||+|.||+++|..|+++|+        +|++|.++++... ...+.++..    .+.- .+.   --....++++
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~----~~N~~YLp---gv~Lp~~i~~  107 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTR----HQNVKYLP---GITLPDNLVA  107 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTT----CCBTTTBT---TCCCCSSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhc----CcCcccCC---CCcCCCCcEE
Confidence            589999999999999999999876        4999998865311 111111100    0000 010   0123467889


Q ss_pred             ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++|+++ +++||+||.++|...  .+.+++++.++.+++.++++.+.++.
T Consensus       108 t~dl~~al~~ad~ii~avPs~~--~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          108 NPDLIDSVKDVDIIVFNIPHQF--LPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             ESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             eCCHHHHHhcCCEEEEECChhh--hHHHHHHhccccCCCceeEEeccccc
Confidence            999877 899999999999755  67889999999999999988888764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.89  E-value=1.2e-08  Score=88.80  Aligned_cols=105  Identities=12%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.||.++|..++..|+  +|.++|+++++++.....+.+.... .  +         ...++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~--~---------~~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-H--G---------FDTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-c--C---------CCcEEEECCCHHHhC
Confidence            589999999999999999999887  9999999998766443333332110 0  0         012244456778899


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +||+||.+...+              ..+.+.+...+.++++ +++++.-|...
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vivvtNPv  121 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPL  121 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCT-TCEEEECCSSH
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEecCCch
Confidence            999999987432              1223344455667764 55544344433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.89  E-value=2e-09  Score=94.24  Aligned_cols=114  Identities=20%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++..+.+                          .......++++ ++.
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            689999999999999999999999999999986532111                          11122345666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+.. .....++..|.
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  255 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTE  255 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCS
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCC
Confidence            999999999766544333345556778888887333322  23567776643 23345565554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.89  E-value=8.7e-09  Score=89.68  Aligned_cols=114  Identities=22%  Similarity=0.332  Sum_probs=75.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++. +.+           .+.|.             .. .++++ ++.
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~-~~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-----------KEVNG-------------KF-VDLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-----------HHTTC-------------EE-CCHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-----------hhcCc-------------cc-cCHHHHHhh
Confidence            68999999999999999999999999999998865 222           22232             22 25555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.  ...+.+.+.. ...-.++.++.
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~  260 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFE  260 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCC
Confidence            9999999997664332222344456788888774444322  2455555532 22334555554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.88  E-value=8.5e-09  Score=91.21  Aligned_cols=115  Identities=14%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|.+||++... +.+           .+.|.             ...+++++ ++.
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g~-------------~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADGF-------------AVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTTC-------------EECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcCc-------------eEeCCHHHHHhh
Confidence            68999999999999999999999999999998642 221           23332             34556766 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-.+.-+.++++++++..+.+-.  ...+.+.+.. .....++..|.
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~  279 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFE  279 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCS
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccC
Confidence            9999999997665443333455567788888873333222  2456665532 23344555443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.88  E-value=3.4e-09  Score=93.67  Aligned_cols=116  Identities=19%  Similarity=0.192  Sum_probs=77.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|..||+++...+.+           .+.|.             ...+++++ ++.
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-----------KETGA-------------KFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-----------HHHCC-------------EECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-----------HhCCC-------------eEcCCHHHHHhc
Confidence            689999999999999999999999999999986443332           12232             34556776 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+... ..-.++..|.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  284 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWD  284 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCC
Confidence            999999999765443333345556788898887333322  235666666432 2223444443

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.88  E-value=1e-08  Score=90.09  Aligned_cols=114  Identities=16%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++.. .+           .+.|.             .. .++++ ++.
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-----------~~~g~-------------~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VS-----------ASFGV-------------QQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HH-----------HHTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hh-----------hhcCc-------------ee-CCHHHHHhc
Confidence            689999999999999999999999999999987642 22           22232             22 35555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-  ....+.+.+... ..-.++.+|.
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~  283 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFT  283 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecC
Confidence            999999999876543322245556788888877433332  224566655322 2223455553

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.85  E-value=2.8e-08  Score=87.09  Aligned_cols=105  Identities=15%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+||+|||+|.||.++|..++..|+  +|.++|+++++++.....+.+...       +      .....+..+++++++
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~-------~------~~~~~i~~~~d~~~~   85 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL-------F------LKTPKIVSSKDYSVT   85 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG-------G------CSCCEEEECSSGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh-------c------cCCCeEEEcCCHHHh
Confidence            4799999999999999999999998  899999998876654333322100       0      012334557788889


Q ss_pred             cCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++||+||.+..-              +..+.+++...+.++++ +++++.-|...
T Consensus        86 ~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPv  139 (331)
T 4aj2_A           86 ANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLLIVSNPV  139 (331)
T ss_dssp             TTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSH
T ss_pred             CCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecChH
Confidence            999999987521              12334555566778765 55444334433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.84  E-value=9.8e-09  Score=91.92  Aligned_cols=116  Identities=11%  Similarity=0.035  Sum_probs=76.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||+++...+..           .+.|.             ....++++ ++.
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-----------~~~G~-------------~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-----------KELNL-------------TWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-----------HHHTC-------------EECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-----------hhcCc-------------eecCCHHHHHhc
Confidence            689999999999999999999999999999986443322           12232             23345666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-.  ...+.+.+... ..-.++..|.
T Consensus       248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~  311 (393)
T 2nac_A          248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF  311 (393)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred             CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence            9999999997654332222445567788888874443322  24577666432 2334455554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.84  E-value=1.1e-08  Score=89.29  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++... +           .+.|.             .. .++++ ++.
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~-----------~~~g~-------------~~-~~l~ell~~  196 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-A-----------EKINA-------------KA-VSLEELLKN  196 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-H-----------HHTTC-------------EE-CCHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-H-----------HhcCc-------------ee-cCHHHHHhh
Confidence            6899999999999999999999999999999886532 2           22332             22 25555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.  ...+.+.+... ..-.++.+|.
T Consensus       197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~  260 (313)
T 2ekl_A          197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFW  260 (313)
T ss_dssp             CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCC
Confidence            9999999997654322111334456788888774444322  24566666432 2234455554

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.82  E-value=5.7e-09  Score=90.99  Aligned_cols=109  Identities=21%  Similarity=0.265  Sum_probs=73.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++..+                              +. ..++++ ++.
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~  193 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE  193 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence            6899999999999999999999999999999864210                              11 234555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.+  ..+.+.+.....-.++..|.
T Consensus       194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~  256 (311)
T 2cuk_A          194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTD  256 (311)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCS
T ss_pred             CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCC
Confidence            99999999987543322212344567888887744433222  45777665222234556554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.82  E-value=2e-08  Score=89.11  Aligned_cols=114  Identities=18%  Similarity=0.155  Sum_probs=76.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|..||++... +.+           .+.|.             . ..++++ ++.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g~-------------~-~~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENGV-------------E-PASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTTC-------------E-ECCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcCe-------------e-eCCHHHHHhc
Confidence            68999999999999999999999999999998532 211           22332             2 245666 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+....-..++..|.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~  293 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYP  293 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCS
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCC
Confidence            999999999876654444455666788898887333222  2356776664332225555553

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.79  E-value=8.1e-09  Score=89.64  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++  +.               +.             ....++++ ++.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~~  174 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALRE  174 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHhh
Confidence            6899999999999999999999999999999864  10               10             12345655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~  144 (297)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+++-.  ...+.+.+.. ...-.+...+
T Consensus       175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            9999999998765333222355567888888873333322  2356655532 2334666666

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.79  E-value=1.3e-07  Score=72.36  Aligned_cols=100  Identities=16%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cCc---
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SNL---   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~---   79 (297)
                      +++|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+           .+.|..           +...  ++.   
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-----------~~~~~~-----------~~~gd~~~~~~l   63 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL-----------EDEGFD-----------AVIADPTDESFY   63 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-----------HHTTCE-----------EEECCTTCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCCc-----------EEECCCCCHHHH
Confidence            4689999999999999999999999999999999887665           222310           0011  111   


Q ss_pred             c--cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHH
Q 022407           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      .  .+.++|+||.+++++. ....+...+.+.. ...+++..++....+.+
T Consensus        64 ~~~~~~~~d~vi~~~~~~~-~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           64 RSLDLEGVSAVLITGSDDE-FNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             HHSCCTTCSEEEECCSCHH-HHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             HhCCcccCCEEEEecCCHH-HHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence            1  2468999999998443 3333444444444 55566655554444434

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.78  E-value=7.2e-08  Score=87.98  Aligned_cols=78  Identities=17%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CcEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407            5 MKVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT   76 (297)
Q Consensus         5 ~~~V~iiG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      .+||+|||+|.. |.+++..|+..     +++|.+||+++  ++++.... +.+.+..  ..+         ...+++.+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~~~--~~~---------~~~~i~~t   74 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRMVE--KAG---------VPIEIHLT   74 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHHHH--HTT---------CCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHHHh--hcC---------CCcEEEEe
Confidence            469999999999 88888888874     67899999999  88776432 2222110  111         12356677


Q ss_pred             cCc-ccccCCcEEEEeccc
Q 022407           77 SNL-KDLHSADIIVEAIVE   94 (297)
Q Consensus        77 ~~~-~~~~~aD~Vi~~v~e   94 (297)
                      +|+ +++++||+||.+++.
T Consensus        75 ~D~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           75 LDRRRALDGADFVTTQFRV   93 (450)
T ss_dssp             SCHHHHHTTCSEEEECCCT
T ss_pred             CCHHHHhCCCCEEEEcCCC
Confidence            887 459999999999874

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.78  E-value=4e-08  Score=88.37  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=73.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|.+||+++...                .            .......++++ ++.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence            689999999999999999999999999999874310                0            01234456766 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCCC-eEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPC-QVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~-~~~g~h~~  144 (297)
                      ||+|+.++|...+.+.-+-++.-..++++++++..+.+  +....+.+.+.... .-.++.-|
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf  271 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVF  271 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCC
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCC
Confidence            99999999987664433334555677888888733333  23356777764332 23444433

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.75  E-value=8.1e-08  Score=82.67  Aligned_cols=107  Identities=18%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.+|.++|..|+..+.  ++.++|+++++.+.....+.+....            -....++..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~------------~~~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG------------IDKYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGG------------GTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccccc------------CCCCCeEecCCCHHHhC
Confidence            589999999999999999988775  7999999987765433333322110            01123455677889999


Q ss_pred             CCcEEEEec--cc------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           84 SADIIVEAI--VE------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        84 ~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +||+||.+.  |-            +..+.+.+..++.++++. ++++.-|..+.+
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~-aivlvvsNPvd~  123 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKILVVTNPMDV  123 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEEECSSSHHH
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEecCcchh
Confidence            999999875  21            122344555567777654 444444555443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.73  E-value=4.9e-08  Score=87.95  Aligned_cols=100  Identities=22%  Similarity=0.370  Sum_probs=70.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||+.+|..+...|++|..||+++..                ..+            .+....++++ ++.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~----------------~~~------------~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL----------------PLG------------NATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC----------------CCT------------TCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchh----------------ccC------------CceecCCHHHHHhc
Confidence            68999999999999999999999999999987531                001            1234456766 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS  133 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  133 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            999999999876544333244556778888887333322  2246666664

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.73  E-value=3.7e-09  Score=92.39  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|++||++++..+..                          .......++++ ++.
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence            689999999999999999999999999999986421110                          11112345666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-.+.-+.++++++++..+.+-.  ...+.+.+... ....++..|.
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  258 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFE  258 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCS
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCC
Confidence            9999999996654332222334456788888873333322  35676666432 3334555543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.73  E-value=1e-07  Score=83.36  Aligned_cols=105  Identities=12%  Similarity=0.242  Sum_probs=63.5

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCc
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNL   79 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~   79 (297)
                      +..+||+|||+|.+|.+++..|+..|+  +|.++|+++++++.....        ...+.       .....+++ .++.
T Consensus         5 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d--------l~~~~-------~~~~~~~i~~~~~   69 (318)
T 1y6j_A            5 KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGL-------PFMGQMSLYAGDY   69 (318)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSC-------CCTTCEEEC--CG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH--------HHHhH-------HhcCCeEEEECCH
Confidence            345799999999999999999999998  999999998766532111        11111       01112222 2456


Q ss_pred             ccccCCcEEEEecccCH--------------HHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           80 KDLHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +++++||+||.+++...              .+.+++...+.++++ +++++..|...
T Consensus        70 ~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPv  126 (318)
T 1y6j_A           70 SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYN-HGVILVVSNPV  126 (318)
T ss_dssp             GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEECSSSH
T ss_pred             HHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCcH
Confidence            67999999999886432              113455566777764 55444334433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.71  E-value=2.8e-07  Score=70.08  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC---c---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN---L---   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~---   79 (297)
                      ++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+          ..+..            ....+   .   
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~~~~~------------~~~~d~~~~~~l   62 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA----------EIDAL------------VINGDCTKIKTL   62 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----------HCSSE------------EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------hcCcE------------EEEcCCCCHHHH
Confidence            68999999999999999999999999999999887665411          11210            01111   1   


Q ss_pred             --ccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           80 --KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        80 --~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                        ..+.++|+||.+++.+.. . ..+..+.+.+++..+++..
T Consensus        63 ~~~~~~~~d~vi~~~~~~~~-~-~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           63 EDAGIEDADMYIAVTGKEEV-N-LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHTTTTTCSEEEECCSCHHH-H-HHHHHHHHHTTCCCEEEEC
T ss_pred             HHcCcccCCEEEEeeCCchH-H-HHHHHHHHHcCCCEEEEEe
Confidence              125789999999986532 2 2333344445556666643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.71  E-value=4.5e-09  Score=92.35  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||+++...+..           .+.|.             .. .++++ ++.
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g~-------------~~-~~l~ell~~  200 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-----------QRLGL-------------RQ-VACSELFAS  200 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-----------HHHTE-------------EE-CCHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-----------HhcCc-------------ee-CCHHHHHhh
Confidence            689999999999999999999999999999987333222           11221             22 35665 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS  133 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  133 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+.
T Consensus       201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~  251 (330)
T 4e5n_A          201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALE  251 (330)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence            999999999765544333345667788898887433332  2356666653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.71  E-value=1.2e-07  Score=82.85  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+||+|||+|.+|.+++..|+..|+  +|.++|+++++++.....+.+.. .+  .+         ..-+++. ++.+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~--~~---------~~~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PY--SP---------TTVRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GG--SS---------SCCEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hh--cC---------CCeEEEe-CCHHHh
Confidence            4699999999999999999998885  89999999887664322222210 00  00         0112333 556679


Q ss_pred             cCCcEEEEecccC--H------------HHHHHHHHHHHhhccCCeEEeecCC
Q 022407           83 HSADIIVEAIVES--E------------DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        83 ~~aD~Vi~~v~e~--~------------~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ++||+||.+++..  .            .+.+++...+.++++ +++++..|.
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv~tN  124 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKF-DGIFLVATN  124 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSS
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecC
Confidence            9999999987432  1            234455566777765 444443343

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.70  E-value=1.2e-07  Score=83.53  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-   80 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (297)
                      .+||+|||+ |.+|+.+|..++..|.  +|.++|+++++++.....+.+.        .+.       ..++..++++. 
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~~   72 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIKE   72 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHHH
Confidence            369999998 9999999999999984  8999999988766543333221        110       13566777775 


Q ss_pred             cccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCe
Q 022407           81 DLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASA  114 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~  114 (297)
                      ++++||+||.+...              +..+.+.+...+.++++...
T Consensus        73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            48999999998521              12345556666888886664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.69  E-value=8.8e-09  Score=91.67  Aligned_cols=116  Identities=18%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++|+|||+|.||..+|..+...|++ |++||+++...+..           .+.|             +...+++++ ++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-----------EKVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-----------HHTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-----------HhcC-------------cEecCCHHHHHh
Confidence            6899999999999999999999998 99999987543322           2222             123346666 78


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      .||+|+.++|...+.+.-+-++..+.++++++++..+.+-  ....+.+.+... ..-.++.-|.
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~  285 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWF  285 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCC
Confidence            9999999999865533323244556678888877444332  235566666432 2234444443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.69  E-value=9.1e-09  Score=90.89  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=70.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++... .           .+.|.             ....++++ ++.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~g~-------------~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-----------RALGL-------------QRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-----------HHHTC-------------EECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-----------hhcCC-------------eecCCHHHHHhc
Confidence            6899999999999999999999999999998765311 1           11121             23345655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS  133 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~  133 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+.
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~  274 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  274 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence            999999999765433222244455778888877444332  2355666653

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.68  E-value=6.2e-08  Score=85.23  Aligned_cols=113  Identities=17%  Similarity=0.132  Sum_probs=74.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||+++++.  +           .+ .             +...+++++ ++.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-----------~~-~-------------~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-----------EK-K-------------GYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-----------HH-T-------------TCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-----------Hh-h-------------CeecCCHHHHHhh
Confidence            689999999999999999999999999999987643  1           00 1             012335555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+... ..-.++..|.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~  263 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  263 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCC
Confidence            999999999766533222233445678888877444332  235666666432 2334455443

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.68  E-value=3e-07  Score=80.35  Aligned_cols=103  Identities=15%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      +||+|||+|.+|.+++..++..++  ++.++|+++++++.....+.+..               .....+++ .++.+++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~---------------~~~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ---------------AFTAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH---------------HhcCCeEEEECCHHHh
Confidence            699999999999999999998887  89999999887765322222111               01112222 3556679


Q ss_pred             cCCcEEEEecccCH--------------HHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           83 HSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++||+||.+.+-..              .+.+++...+.++++ +++++.-|....
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~tNPv~  125 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF-DGIFLVAANPVD  125 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCcHH
Confidence            99999999874321              234445556777765 444443344333

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.67  E-value=1.9e-07  Score=81.54  Aligned_cols=105  Identities=16%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      ..+||+|||+|.||.++|..|+..|+  +|.++|+++++++.....+.+..               .....++. +++++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL---------------PFTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh---------------hhcCCcEEEECcHH
Confidence            34799999999999999999999888  89999999887765432222110               01112233 45577


Q ss_pred             cccCCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           81 DLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++||+||.+..-.              ..+.+.+...+.++++ +++++.-|....
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvtNPvd  129 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAANPVD  129 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECSSSHH
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEccCchH
Confidence            799999999986321              1123445556777765 554443444333

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.67  E-value=2.8e-09  Score=92.96  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||+.+|..+...|++|.+||++++..+..                          .......++++ ++.
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999986532110                          00011135555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+-  ....+.+.+... ....++..|.
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~  257 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFS  257 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCS
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCC
Confidence            999999999766544333355566788898887333332  235676666432 2334455554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.64  E-value=4.2e-08  Score=85.66  Aligned_cols=89  Identities=13%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|++. |+ +|++||+++++.+++.+.          .+.           .+...+++++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e  192 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQE  192 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHH
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHH
Confidence            347899999999999999999876 86 899999999987765221          110           2345667766


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +++||+||.|+|...    .++..  +.++++++|++.
T Consensus       193 ~v~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~  225 (312)
T 2i99_A          193 AVAGADVIITVTLATE----PILFG--EWVKPGAHINAV  225 (312)
T ss_dssp             HHTTCSEEEECCCCSS----CCBCG--GGSCTTCEEEEC
T ss_pred             HHhcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeC
Confidence             789999999998532    22222  456777777653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.64  E-value=5e-07  Score=69.16  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=63.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC------
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN------   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------   78 (297)
                      ..+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+           .+.|..            ....|      
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-----------~~~g~~------------~i~gd~~~~~~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-----------RERGVR------------AVLGNAANEEI   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-----------HHTTCE------------EEESCTTSHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHcCCC------------EEECCCCCHHH
Confidence            3589999999999999999999999999999999988765           233321            11111      


Q ss_pred             cc--cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           79 LK--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        79 ~~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +.  .+.++|+||.+++++.... .+...+.+..+.-.+++...
T Consensus        64 l~~a~i~~ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           64 MQLAHLECAKWLILTIPNGYEAG-EIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             HHHTTGGGCSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEEES
T ss_pred             HHhcCcccCCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEEEC
Confidence            11  2578999999999776432 23333444444445665433

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.63  E-value=1.8e-07  Score=81.51  Aligned_cols=104  Identities=24%  Similarity=0.261  Sum_probs=66.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.+++..|+..+  .+|.++|+++++++.....+.+.        .  +  . ...-+++. ++.++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~--------~--~--~-~~~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA--------T--P--F-AHPVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT--------G--G--G-SCCCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh--------H--h--h-cCCeEEEE-CCHHHhC
Confidence            58999999999999999999887  58999999988776432222111        0  0  0 01122333 4667799


Q ss_pred             CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +||+||.+.+-.              ..+.+++...+.++++. ++++.-|....
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~iiv~tNPv~  120 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE-AVLLVATNPVD  120 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHH
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCC-cEEEEecCchH
Confidence            999999987432              23344555667777654 44443344333

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.63  E-value=4.8e-07  Score=79.29  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=66.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      .+||+|||+|.+|.+++..++..++  +|.++|+++++++.....+.+        ..       .....+++ .++.++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~--------~~-------~~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN--------AL-------PFTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHT--------TG-------GGSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHH--------HH-------HhcCCeEEEECCHHH
Confidence            4699999999999999999998886  899999998877653222211        10       01122222 355667


Q ss_pred             ccCCcEEEEecccCH--------------HHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIVESE--------------DVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~--------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++||+||.+.+-..              .+.+.+...+.++++...++. -|....
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv-~tNPv~  129 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV-AANPVD  129 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHH
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-eCCcHH
Confidence            999999999874321              234445556777775444443 344333

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.60  E-value=1.7e-08  Score=89.76  Aligned_cols=110  Identities=19%  Similarity=0.176  Sum_probs=74.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|.+||++.+..               ..+              ....++++ ++.
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~---------------~~~--------------~~~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR---------------GDE--------------GDFRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT---------------TCC--------------SCBCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh---------------ccC--------------cccCCHHHHHhh
Confidence            689999999999999999999999999999743211               001              12345666 789


Q ss_pred             CcEEEEecccCHH----HHHHHHHHHHhhccCCeEEeecCCCcc---HHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESED----VKKKLFSELDKITKASAILASNTSSIS---ITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+    .+.-+-.+.-+.++++++++ |++.-+   ...+.+.+.. .....++..|.
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~e  238 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILI-NACRGPVVDNAALLARLNAGQPLSVVLDVWE  238 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence            9999999986554    32222234445678888887 444332   3567766643 33455666554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.60  E-value=4.9e-07  Score=72.37  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC---c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN---L   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---~   79 (297)
                      ++|.|+|+|.||..+|..|.+. |++|+++|+++++.+.+           .+.|..           +...  ++   +
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-----------~~~g~~-----------~~~gd~~~~~~l   97 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-----------RSEGRN-----------VISGDATDPDFW   97 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-----------HHTTCC-----------EEECCTTCHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-----------HHCCCC-----------EEEcCCCCHHHH
Confidence            5899999999999999999999 99999999999887665           333321           0010  11   1


Q ss_pred             c---cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           80 K---DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ~---~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .   .+.++|+||.+++++... ..+...+.+..+...+++
T Consensus        98 ~~~~~~~~ad~vi~~~~~~~~~-~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A           98 ERILDTGHVKLVLLAMPHHQGN-QTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             HTBCSCCCCCEEEECCSSHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred             HhccCCCCCCEEEEeCCChHHH-HHHHHHHHHHCCCCEEEE
Confidence            1   256899999999875542 333344444433444444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.58  E-value=3.4e-08  Score=76.12  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..++..|...|++|+++|+++++.+.+.+.          .+.           .+...++..+ +++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~----------~~~-----------~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK----------YEY-----------EYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHH----------HTC-----------EEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHH----------hCC-----------ceEeecCHHHHhcC
Confidence            689999999999999999999999999999999887664221          111           1223445554 788


Q ss_pred             CcEEEEecccC
Q 022407           85 ADIIVEAIVES   95 (297)
Q Consensus        85 aD~Vi~~v~e~   95 (297)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999865

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.56  E-value=1.9e-08  Score=88.50  Aligned_cols=112  Identities=21%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|.+||++++..              .+.+             .... ++++ ++.
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~~-------------~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEPF-------------LTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTTT-------------CEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhcc-------------cccc-CHHHHHhc
Confidence            689999999999999999999999999999987530              1111             1233 6666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCC-CCeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSR-PCQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-.+.-+.++++++++..+.+-  ....+.+.+.. .....++.-|.
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~  264 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLA  264 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCT
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccc
Confidence            999999999765543333344556678888887333322  23566666532 22334555443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.56  E-value=2.4e-08  Score=88.95  Aligned_cols=111  Identities=18%  Similarity=0.168  Sum_probs=72.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.||..+|..+...|++|.+||++++..               +.+.              ...++++ +++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~--------------~~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG--------------EFVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS--------------CCCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc--------------ccCCHHHHHHh
Confidence            689999999999999999999999999999765321               1111              1235555 789


Q ss_pred             CcEEEEecccCHH----HHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESED----VKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~----~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+    .+.-+-++.-+.++++++++..+.+-  ....+.+.+... ..-.++..|.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~  235 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWE  235 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeec
Confidence            9999999987654    32222234556678888877333332  225576666432 2344555443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.55  E-value=1.8e-07  Score=71.48  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.||..++.+|.+.||+|+.+|++.+.+                             ..+.+..+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            368999999    9999999999999999866666543211                             1135666777


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      + ...+|+++.++|. . ...+++.++.+ .....++. .+++.
T Consensus        65 el~~~vDlvii~vp~-~-~v~~v~~~~~~-~g~~~i~~-~~~~~  104 (138)
T 1y81_A           65 ELPKDVDVIVFVVPP-K-VGLQVAKEAVE-AGFKKLWF-QPGAE  104 (138)
T ss_dssp             GSCTTCCEEEECSCH-H-HHHHHHHHHHH-TTCCEEEE-CTTSC
T ss_pred             HhCCCCCEEEEEeCH-H-HHHHHHHHHHH-cCCCEEEE-cCccH
Confidence            7 4679999999994 3 34556665554 23345554 33444

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.54  E-value=8.7e-07  Score=68.97  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      .++|.|+|+|.+|..++..|...|++|+++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            368999999999999999999999999999999887654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.53  E-value=2.7e-07  Score=67.96  Aligned_cols=41  Identities=32%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      +.++|.|+|+|.||..++..|.+.| ++|+++|+++++++.+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            4578999999999999999999999 9999999999877654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.50  E-value=1.7e-07  Score=82.34  Aligned_cols=112  Identities=19%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++..  +                      ..   .+.. .++++ ++.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~----------------------~~---~~~~-~~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D----------------------HP---DFDY-VSLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C----------------------CT---TCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h----------------------Hh---cccc-CCHHHHHhc
Confidence            689999999999999999999999999999986421  0                      00   0122 25555 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-++.-+.++++++++..+.+  +....+.+.+... ..-.++..|.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~  261 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  261 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCC
Confidence            99999999987654332224455667888877733332  2335677766432 2334454443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.50  E-value=1.3e-06  Score=66.64  Aligned_cols=93  Identities=16%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cCc---
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SNL---   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~---   79 (297)
                      .++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+           .+.+.           .....  ++.   
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~~~-----------~~~~~d~~~~~~l   63 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-----------ASYAT-----------HAVIANATEENEL   63 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-----------TTTCS-----------EEEECCTTCHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHhCC-----------EEEEeCCCCHHHH
Confidence            3579999999999999999999999999999998765443           11111           00010  111   


Q ss_pred             c--cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .  .+.++|+||.+++.+.+....+.....+ ..+..++...+
T Consensus        64 ~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~  105 (144)
T 2hmt_A           64 LSLGIRNFEYVIVAIGANIQASTLTTLLLKE-LDIPNIWVKAQ  105 (144)
T ss_dssp             HTTTGGGCSEEEECCCSCHHHHHHHHHHHHH-TTCSEEEEECC
T ss_pred             HhcCCCCCCEEEECCCCchHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            1  1568999999998764333333333333 33455665443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.47  E-value=3.1e-07  Score=70.80  Aligned_cols=101  Identities=16%  Similarity=0.119  Sum_probs=65.0

Q ss_pred             cEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ++|+|||+    |.||..++.+|.+.||+|+.+|++.  +.+                             ..+.+..++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            58999999    8999999999999999977776654  211                             123556677


Q ss_pred             cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhc-CCCCeEEE
Q 022407           80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT-SRPCQVIG  140 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g  140 (297)
                      ++ ...+|+++.++|. .. ..+++.++.+. ....+++. +++.. .++.+.+ ....+++|
T Consensus        65 ~el~~~~Dlvii~vp~-~~-v~~v~~~~~~~-g~~~i~i~-~~~~~-~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRNS-EA-AWGVAQEAIAI-GAKTLWLQ-LGVIN-EQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSCS-TH-HHHHHHHHHHH-TCCEEECC-TTCCC-HHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeCH-HH-HHHHHHHHHHc-CCCEEEEc-CChHH-HHHHHHHHHcCCEEEc
Confidence            77 4578999999995 33 44556655553 33455553 44443 3333333 23345553

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.45  E-value=4.9e-07  Score=77.39  Aligned_cols=68  Identities=18%  Similarity=0.309  Sum_probs=53.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||++++..|.+.|++|+++||++++.+.+           .+.  +          .+...+++++ +++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l-----------~~~--~----------g~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL-----------AQK--F----------PLEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHH-----------TTT--S----------CEEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHH-----------HHH--c----------CCeeehhHHhhhcC
Confidence            689999999999999999999999999999999876654           111  0          1234445554 789


Q ss_pred             CcEEEEecccCH
Q 022407           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||.|+|...
T Consensus       187 aDiVi~atp~~~  198 (275)
T 2hk9_A          187 VQVIVNTTSVGL  198 (275)
T ss_dssp             CSEEEECSSTTS
T ss_pred             CCEEEEeCCCCC
Confidence            999999998654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.40  E-value=6.6e-07  Score=77.60  Aligned_cols=68  Identities=25%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|++||+++++.+.+           .+.|.           ......++++ +++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g~-----------~~~~~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-----------TEMGL-----------VPFHTDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-----------HHTTC-----------EEEEGGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCC-----------eEEchhhHHHHhhC
Confidence            689999999999999999999999999999998765443           12221           0011234544 789


Q ss_pred             CcEEEEecccC
Q 022407           85 ADIIVEAIVES   95 (297)
Q Consensus        85 aD~Vi~~v~e~   95 (297)
                      ||+||.++|..
T Consensus       216 aDvVi~~~p~~  226 (300)
T 2rir_A          216 IDICINTIPSM  226 (300)
T ss_dssp             CSEEEECCSSC
T ss_pred             CCEEEECCChh
Confidence            99999999863

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.39  E-value=1.7e-07  Score=82.32  Aligned_cols=112  Identities=21%  Similarity=0.137  Sum_probs=72.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|++|++||++++..  +            +             ..+.. .++++ ++.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~-~~l~ell~~  198 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCTQ-VSLDEVLEK  198 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCEE-CCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hcccc-CCHHHHHhh
Confidence            689999999999999999999999999999986421  0            0             00122 35655 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|...+.+.-+-.+.-+.++++++++..+.+  +....+.+.+... ..-.++..|.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~  262 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLD  262 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCC
Confidence            99999999976543322223444567888877733322  2235666666432 2334455453

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.38  E-value=8.3e-07  Score=76.69  Aligned_cols=85  Identities=18%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.+           .+.|.           ......++++ +++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-----------~~~~~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-----------AEMGM-----------EPFHISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-----------HHTTS-----------EEEEGGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCC-----------eecChhhHHHHhcC
Confidence            689999999999999999999999999999998765443           22231           0001134444 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +|+|+.++|....-. .    ..+.++++.+++
T Consensus       214 aDvVi~~~p~~~i~~-~----~l~~mk~~~~li  241 (293)
T 3d4o_A          214 VDVCINTIPALVVTA-N----VLAEMPSHTFVI  241 (293)
T ss_dssp             CSEEEECCSSCCBCH-H----HHHHSCTTCEEE
T ss_pred             CCEEEECCChHHhCH-H----HHHhcCCCCEEE
Confidence            999999998633211 1    123455666655

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.36  E-value=2.8e-06  Score=74.53  Aligned_cols=109  Identities=10%  Similarity=0.080  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTD----PDALVRATKSISSSIQKFVSKGQLSQAMGTD   68 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   68 (297)
                      |.+..+||+|+|+ |.+|.+++..|+..|+       +|.++|++    +++++.....        ...+..      .
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d--------l~~~~~------~   66 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME--------IDDCAF------P   66 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH--------HHTTTC------T
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH--------Hhhhcc------c
Confidence            6444579999998 9999999999999886       89999999    5444321111        111111      0


Q ss_pred             cCCceEEecCccc-ccCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           69 APRRLRCTSNLKD-LHSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        69 ~~~~i~~~~~~~~-~~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ....+..+++..+ +++||+||.+..-  .            ....+.+.+.+.+++.++++++..|+..
T Consensus        67 ~~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv  136 (329)
T 1b8p_A           67 LLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA  136 (329)
T ss_dssp             TEEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             ccCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence            1234556666544 8999999987521  1            1234455666777764555544334333

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.36  E-value=3.6e-06  Score=72.98  Aligned_cols=104  Identities=18%  Similarity=0.291  Sum_probs=63.4

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGL--DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||+|+| +|.+|.+++..|+..|+  ++.++|+  ++++++.....+.+.    ...+         ..-+++. ++.+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~----~~~~---------~~~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IAYD---------SNTRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HTTT---------CCCEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH----HhhC---------CCcEEEe-CCHH
Confidence            4899999 99999999999998886  7999999  876654322222111    1100         0112222 4566


Q ss_pred             cccCCcEEEEeccc--CH------------HHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           81 DLHSADIIVEAIVE--SE------------DVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e--~~------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++||+||.+..-  ..            ...+.+.+.+.++.+ +.+++..|....
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~SNPv~  123 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVD  123 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHH
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEeCChHH
Confidence            69999999988632  11            234445556666654 444443444443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.36  E-value=5e-06  Score=68.43  Aligned_cols=89  Identities=11%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC------c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      |||.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+          ..+.           . ....|      +
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~----------~~~~-----------~-~i~gd~~~~~~l   58 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAK----------KLKA-----------T-IIHGDGSHKEIL   58 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----------HSSS-----------E-EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH----------HcCC-----------e-EEEcCCCCHHHH
Confidence            47999999999999999999999999999999998776421          1121           0 11111      1


Q ss_pred             c--cccCCcEEEEecccCHHHHHHHHHHHHh-hccCCeEEee
Q 022407           80 K--DLHSADIIVEAIVESEDVKKKLFSELDK-ITKASAILAS  118 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s  118 (297)
                      .  .+.+||+||.+++++..  ......+.+ ..+...+++.
T Consensus        59 ~~a~i~~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           59 RDAEVSKNDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             HHHTCCTTCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEEC
T ss_pred             HhcCcccCCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEEE
Confidence            1  26789999999987653  233333333 3455556653

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.28  E-value=5.5e-06  Score=73.39  Aligned_cols=72  Identities=24%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +..||+|||+|.||..++..+.+.  +++++ ++|+++++++.+.+.          .|             +...+|++
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~   68 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT   68 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence            457999999999999999999887  77755 899999887665211          12             24677877


Q ss_pred             c-cc--CCcEEEEecccCHHH
Q 022407           81 D-LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~   98 (297)
                      + ++  ++|+|+.|+|...+.
T Consensus        69 ~ll~~~~~D~V~i~tp~~~h~   89 (354)
T 3q2i_A           69 DMLAQTDADIVILTTPSGLHP   89 (354)
T ss_dssp             HHHHHCCCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEECCCcHHHH
Confidence            7 54  799999999987753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.25  E-value=6.6e-06  Score=71.69  Aligned_cols=94  Identities=16%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE---ecCc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC---TSNL   79 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   79 (297)
                      +||+|||+ |.+|.+++..|+..|  ++|.++|+++.  +....       . +....        ...+++.   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~--~~~a~-------d-L~~~~--------~~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAA-------D-LSHIE--------TRATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHH-------H-HTTSS--------SSCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc--HHHHH-------H-HhccC--------cCceEEEecCCCCH
Confidence            48999998 999999999999988  79999999871  11100       0 11111        1123444   2567


Q ss_pred             cc-ccCCcEEEEeccc--CH------------HHHHHHHHHHHhhccCCeEEe
Q 022407           80 KD-LHSADIIVEAIVE--SE------------DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e--~~------------~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ +++||+||.+...  ..            .+.+.+...+.++++...++.
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv  115 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI  115 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            75 8999999998732  11            345566667777775444443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.23  E-value=4e-06  Score=73.60  Aligned_cols=100  Identities=10%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |..+..||+|||+|.||..++..+.+. +++|+ ++|+++++++.+.+          +.|.            ....++
T Consensus         1 M~m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~----------~~~~------------~~~~~~   58 (330)
T 3e9m_A            1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK----------ELAI------------PVAYGS   58 (330)
T ss_dssp             --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH----------HTTC------------CCCBSS
T ss_pred             CCCCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH----------HcCC------------CceeCC
Confidence            544557999999999999999999884 67776 88999887765521          1121            024566


Q ss_pred             ccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...+.. .+...+..   ...+++....+.+.+
T Consensus        59 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  105 (330)
T 3e9m_A           59 YEELCKDETIDIIYIPTYNQGHYS-AAKLALSQ---GKPVLLEKPFTLNAA  105 (330)
T ss_dssp             HHHHHHCTTCSEEEECCCGGGHHH-HHHHHHHT---TCCEEECSSCCSSHH
T ss_pred             HHHHhcCCCCCEEEEcCCCHHHHH-HHHHHHHC---CCeEEEeCCCCCCHH
Confidence            766 44  7999999999887632 22222222   234666555455553

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.22  E-value=1.2e-05  Score=70.78  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=65.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |.+ +.||+|||+|.||..++..|.+. +++|+ ++|+++++++...+          +.|             ....++
T Consensus         1 M~~-~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------~~g-------------~~~~~~   56 (344)
T 3euw_A            1 MSL-TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------ANG-------------AEAVAS   56 (344)
T ss_dssp             --C-CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------TTT-------------CEEESS
T ss_pred             CCC-ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------HcC-------------CceeCC
Confidence            543 36899999999999999999886 77766 89999988765411          112             246677


Q ss_pred             ccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...+.. .+...+..   ...+++....+.+..
T Consensus        57 ~~~~l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~~~~~~  103 (344)
T 3euw_A           57 PDEVFARDDIDGIVIGSPTSTHVD-LITRAVER---GIPALCEKPIDLDIE  103 (344)
T ss_dssp             HHHHTTCSCCCEEEECSCGGGHHH-HHHHHHHT---TCCEEECSCSCSCHH
T ss_pred             HHHHhcCCCCCEEEEeCCchhhHH-HHHHHHHc---CCcEEEECCCCCCHH
Confidence            776 55  7999999999877642 22222322   234666555455553

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=98.22  E-value=1.6e-05  Score=71.76  Aligned_cols=73  Identities=11%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             CcEEEEECCChh-HHHHHHHHHH--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQM-GSGIAQLGVM--D---GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|.. +..+...|+.  .   +.+|.++|+++++++... .+.+.+   ...          . .+++.++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~---~~~----------~-~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKD----------R-FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTT----------S-SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHH---hhC----------C-eEEEEeCC
Confidence            469999999985 2222233454  3   568999999998877532 222111   110          1 34666678


Q ss_pred             c-ccccCCcEEEEec
Q 022407           79 L-KDLHSADIIVEAI   92 (297)
Q Consensus        79 ~-~~~~~aD~Vi~~v   92 (297)
                      + +++++||+||.+.
T Consensus        67 ~~~al~~AD~Viita   81 (417)
T 1up7_A           67 FEGAVVDAKYVIFQF   81 (417)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCEEEEcC
Confidence            7 5599999999987

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.22  E-value=5.5e-06  Score=72.58  Aligned_cols=100  Identities=19%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE---ecC
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC---TSN   78 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      .+||+|+| +|.+|..++..|+..|  ++|+++|++++.. .+.        . ......        ..++..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~-~~~--------d-L~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG-VTA--------D-ISHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH-HHH--------H-HHTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh-HHH--------H-hhcccc--------cceEEEEeCCCC
Confidence            46999999 7999999999999999  8999999987611 110        0 111110        112333   335


Q ss_pred             ccc-ccCCcEEEEecccC--H------------HHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           79 LKD-LHSADIIVEAIVES--E------------DVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~--~------------~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +++ +++||+||.+....  .            ...+.+.+.+.++.+ +.+++..|...
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv~SNPv  128 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNLISNPV  128 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEECCch
Confidence            544 89999999987321  1            334455566777764 44444334433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.22  E-value=3.4e-06  Score=77.09  Aligned_cols=96  Identities=22%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|++||+++.....+           ...|.             .. .++++ ++.
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-----------~~~g~-------------~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------VMEGF-------------NV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------HTTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-----------HHcCC-------------Ee-cCHHHHHhc
Confidence            689999999999999999999999999999998764332           22231             22 35555 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhh
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLAS  130 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~  130 (297)
                      ||+|+.+.....-+.    .+.-+.++++++|+..+.+   +....+.+
T Consensus       313 aDiVi~~~~t~~lI~----~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTGNVDVIK----LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCSSSSSBC----HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCChhhhcC----HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999963222111    2333457888888743333   34456665

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.21  E-value=2e-06  Score=71.84  Aligned_cols=60  Identities=20%  Similarity=0.400  Sum_probs=47.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c-
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L-   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-   82 (297)
                      +||+|||+|.||..++..+.+.|++| .+||+++. .+                             .  ..+++++ + 
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~-----------------------------~--~~~~~~~l~~   48 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE-----------------------------K--MVRGIDEFLQ   48 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT-----------------------------T--EESSHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh-----------------------------h--hcCCHHHHhc
Confidence            48999999999999999999999997 69998742 10                             0  3455655 5 


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+|++|+|.+.+
T Consensus        49 ~~~DvVv~~~~~~~~   63 (236)
T 2dc1_A           49 REMDVAVEAASQQAV   63 (236)
T ss_dssp             SCCSEEEECSCHHHH
T ss_pred             CCCCEEEECCCHHHH
Confidence            689999999996643

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.21  E-value=3.6e-06  Score=71.48  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      +|+|||+|.||.+++..|.+.|++|+++|+++++.+.+.+.          .+.             . .+++++++++|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~-------------~-~~~~~~~~~~D  173 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL-------------R-AVPLEKAREAR  173 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC-------------E-ECCGGGGGGCS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc-------------c-hhhHhhccCCC
Confidence            79999999999999999999999999999999876654211          111             1 23333337899


Q ss_pred             EEEEecccCH
Q 022407           87 IIVEAIVESE   96 (297)
Q Consensus        87 ~Vi~~v~e~~   96 (297)
                      +||.|+|...
T Consensus       174 ivi~~tp~~~  183 (263)
T 2d5c_A          174 LLVNATRVGL  183 (263)
T ss_dssp             EEEECSSTTT
T ss_pred             EEEEccCCCC
Confidence            9999998653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.20  E-value=2.2e-06  Score=77.10  Aligned_cols=86  Identities=26%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|.++|..|...|.+|+++|+++.+...+           ...|.             .. .++++ ++.
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-----------~~~G~-------------~~-~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-----------AMEGY-------------QV-LLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-----------HHhCC-------------ee-cCHHHHHhh
Confidence            689999999999999999999999999999998765443           23332             22 35665 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ||+|+.+.....-+.    .+.-+.++++++|+ |++
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVI-Nvg  298 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVC-NIG  298 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEE-ECS
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEE-EeC
Confidence            999998664322111    12234567888887 444

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.19  E-value=4.2e-06  Score=76.79  Aligned_cols=87  Identities=28%  Similarity=0.357  Sum_probs=61.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.||..+|..+...|.+|++||+++.....+           ...|.             .. .++++ ++.
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-----------~~~G~-------------~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-----------AMEGY-------------RV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-----------HTTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-----------HHcCC-------------Ee-CCHHHHHhc
Confidence            689999999999999999999999999999998764222           12221             22 35555 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      ||+|+.++....-+.    .+.-+.++++++|+....
T Consensus       333 aDiVi~~~~t~~lI~----~~~l~~MK~gAilINvgr  365 (494)
T 3d64_A          333 ADIFVTATGNYHVIN----HDHMKAMRHNAIVCNIGH  365 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHCCTTEEEEECSS
T ss_pred             CCEEEECCCcccccC----HHHHhhCCCCcEEEEcCC
Confidence            999999983222111    233456788888874333

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.16  E-value=6.2e-06  Score=75.88  Aligned_cols=83  Identities=28%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+           .+.|.             .. .++++ +++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-----------~~~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-----------MMEGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------EE-ecHHHHHhC
Confidence            689999999999999999999999999999999876654           33342             11 23334 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +|+||++++....+..    +..+.++++.+++
T Consensus       330 aDvVi~atgt~~~i~~----~~l~~mk~ggilv  358 (494)
T 3ce6_A          330 ADIVVTATGNKDIIML----EHIKAMKDHAILG  358 (494)
T ss_dssp             CSEEEECSSSSCSBCH----HHHHHSCTTCEEE
T ss_pred             CCEEEECCCCHHHHHH----HHHHhcCCCcEEE
Confidence            9999999875442221    2334567777766

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.14  E-value=1.2e-05  Score=71.40  Aligned_cols=98  Identities=21%  Similarity=0.272  Sum_probs=63.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |.++..||+|||+|.||...+..+.+. +++|. ++|+++++.+.+           .+.|             +...+|
T Consensus         1 M~m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-----------~~~g-------------~~~~~~   56 (359)
T 3e18_A            1 MSLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-----------AQKG-------------LKIYES   56 (359)
T ss_dssp             --CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-----------HTTT-------------CCBCSC
T ss_pred             CCCCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HhcC-------------CceeCC
Confidence            544456999999999999999988876 77775 789998876432           1222             234567


Q ss_pred             ccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  +.|+|+.|+|...+.. .+...+..   ...+++.-..+.+.+
T Consensus        57 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---GkhVl~EKP~a~~~~  103 (359)
T 3e18_A           57 YEAVLADEKVDAVLIATPNDSHKE-LAISALEA---GKHVVCEKPVTMTSE  103 (359)
T ss_dssp             HHHHHHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHHHH-HHHHHHHC---CCCEEeeCCCcCCHH
Confidence            776 44  7899999999877532 22222322   234666544455543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.13  E-value=1e-05  Score=72.28  Aligned_cols=153  Identities=18%  Similarity=0.206  Sum_probs=93.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|||.|..|.+-|.+|..+|.+|++--|.....+. .    +.+++..+.|.             ++.+-.+.++.|
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~-~----~S~~~A~~~Gf-------------~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEK-R----ASWRKATENGF-------------KVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTT-C----HHHHHHHHTTC-------------EEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccc-c----chHHHHHHCCC-------------EecCHHHHHHhC
Confidence            79999999999999999999999999988764321111 0    11122244553             455444458999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC----------Cc-cee
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL----------MK-LVE  154 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~----------~~-~ve  154 (297)
                      |+|+..+|+..  ...++.+|.+.++++..+.. +.+..+..-.-..+....++-+.|-.|-+.          .| ++-
T Consensus       100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liA  176 (491)
T 3ulk_A          100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIA  176 (491)
T ss_dssp             SEEEECSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEE
T ss_pred             CEEEEeCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEE
Confidence            99999999765  45678899999999887774 344444321111122234444444333221          11 233


Q ss_pred             EecCCCChHHHHHHHHHHHHHhCCe
Q 022407          155 VIRGADTSDETFRATKALAERFGKT  179 (297)
Q Consensus       155 v~~~~~~~~~~~~~~~~l~~~lG~~  179 (297)
                      |..-...+-.+.+.+..+...+|..
T Consensus       177 VhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          177 VHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             ECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEeCCCCchhHHHHHHHHHHhcCCC
Confidence            3211223445677778888888864

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.11  E-value=1.9e-05  Score=69.17  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+|.||..++..+.+. +++|. ++|+++++++.+.+          +.|             +. .+++++ 
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~----------~~~-------------~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG----------AYG-------------CE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTT-------------CE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH----------HhC-------------CC-cCCHHHH
Confidence            36899999999999999999885 78876 89999988765521          112             23 566666 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  ++|+|+.|+|...+.. .+...+..   ...+++....+.+.+
T Consensus        59 l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~~~~~~  101 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHAD-LIERFARA---GKAIFCEKPIDLDAE  101 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSCSCSSHH
T ss_pred             hcCCCCCEEEEeCCchhHHH-HHHHHHHc---CCcEEEecCCCCCHH
Confidence            54  7999999999877632 22222222   234665555455554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.11  E-value=7.3e-06  Score=71.52  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.++..||+|||+|.||.. ++..+.+ .|++|. ++|+++++.+.+.+          +.|.             ...+
T Consensus         1 m~m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~----------~~g~-------------~~~~   57 (319)
T 1tlt_A            1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE----------SWRI-------------PYAD   57 (319)
T ss_dssp             ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH----------HHTC-------------CBCS
T ss_pred             CCCCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH----------HcCC-------------CccC
Confidence            5545579999999999997 8887776 477876 99999987665421          1121             1344


Q ss_pred             Ccccc-cCCcEEEEecccCHH
Q 022407           78 NLKDL-HSADIIVEAIVESED   97 (297)
Q Consensus        78 ~~~~~-~~aD~Vi~~v~e~~~   97 (297)
                      +++++ .++|+|+.|+|...+
T Consensus        58 ~~~~l~~~~D~V~i~tp~~~h   78 (319)
T 1tlt_A           58 SLSSLAASCDAVFVHSSTASH   78 (319)
T ss_dssp             SHHHHHTTCSEEEECSCTTHH
T ss_pred             cHHHhhcCCCEEEEeCCchhH
Confidence            55553 679999999998765

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.10  E-value=1.4e-05  Score=70.76  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=64.8

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |++ ..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.          .|.             ...++
T Consensus         2 M~~-~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g~-------------~~~~~   57 (354)
T 3db2_A            2 MYN-PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YNC-------------AGDAT   57 (354)
T ss_dssp             CCC-CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HTC-------------CCCSS
T ss_pred             CCC-cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cCC-------------CCcCC
Confidence            433 36899999999999999999876 78855 889999887665211          121             23566


Q ss_pred             ccc-c--cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           79 LKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ +  .++|+|+.|+|...+.. .+...+..   ...+++....+...+
T Consensus        58 ~~~~l~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  104 (354)
T 3db2_A           58 MEALLAREDVEMVIITVPNDKHAE-VIEQCARS---GKHIYVEKPISVSLD  104 (354)
T ss_dssp             HHHHHHCSSCCEEEECSCTTSHHH-HHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HHHHhcCCCCCEEEEeCChHHHHH-HHHHHHHc---CCEEEEccCCCCCHH
Confidence            666 4  57999999999877632 22222222   234666555555543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.10  E-value=2e-06  Score=76.28  Aligned_cols=39  Identities=18%  Similarity=0.105  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|+|||+|.||..+|..+...|.+|+++|+++++++.+
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  223 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV  223 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999887766

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.09  E-value=1e-05  Score=72.86  Aligned_cols=88  Identities=27%  Similarity=0.337  Sum_probs=61.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|..+|..+...|.+|+++|+++.....+           ...|.             .+ .++++ ++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-----------~~~G~-------------~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-----------AMDGF-------------EV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-----------HhcCc-------------ee-ccHHHHHhh
Confidence            689999999999999999999999999999998754332           22232             22 24555 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ||+|+.+.....-+.    .+.-+.++++++++ |++..
T Consensus       303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSSS
T ss_pred             CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCCC
Confidence            999999864322111    23334568888887 55543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.08  E-value=5.4e-05  Score=68.39  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=63.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC---c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN---L   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---~   79 (297)
                      .++|.|+|+|.+|..+|..|...|++|+++|.++++++.+           .+.|..           +...  ++   +
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-----------~~~g~~-----------vi~GDat~~~~L   61 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-----------RKFGMK-----------VFYGDATRMDLL   61 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-----------HHTTCC-----------CEESCTTCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HhCCCe-----------EEEcCCCCHHHH
Confidence            3579999999999999999999999999999999988776           333321           1111  11   1


Q ss_pred             c-c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           80 K-D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~-~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      . . +.+||+||.+++++.. ...+...+.++.+.-.||+...
T Consensus        62 ~~agi~~A~~viv~~~~~~~-n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           62 ESAGAAKAEVLINAIDDPQT-NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HHTTTTTCSEEEECCSSHHH-HHHHHHHHHHHCTTCEEEEEES
T ss_pred             HhcCCCccCEEEECCCChHH-HHHHHHHHHHhCCCCeEEEEEC
Confidence            1 2 6789999999987553 3333344444444445666443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.08  E-value=0.0001  Score=56.91  Aligned_cols=39  Identities=13%  Similarity=0.067  Sum_probs=34.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~   44 (297)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+.+
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~   43 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL   43 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHH
Confidence            58999999999999999999999999999997 4544443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.08  E-value=1.5e-05  Score=69.19  Aligned_cols=95  Identities=7%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             CcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||.. ++..+.+ .++++. ++|+++++++.+.+          +.|.             ...+++++
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------~~~~-------------~~~~~~~~   62 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS----------DYRI-------------MPFDSIES   62 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH----------HHTC-------------CBCSCHHH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH----------HcCC-------------CCcCCHHH
Confidence            369999999999996 8887876 477877 89999998776521          1121             12566666


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++++|+|+.|+|...+.. .+...+..   ...+++.-..+.+.+
T Consensus        63 ll~~~D~V~i~tp~~~h~~-~~~~al~~---gk~vl~EKP~~~~~~  104 (308)
T 3uuw_A           63 LAKKCDCIFLHSSTETHYE-IIKILLNL---GVHVYVDKPLASTVS  104 (308)
T ss_dssp             HHTTCSEEEECCCGGGHHH-HHHHHHHT---TCEEEECSSSSSSHH
T ss_pred             HHhcCCEEEEeCCcHhHHH-HHHHHHHC---CCcEEEcCCCCCCHH
Confidence             669999999999887632 22222222   233565445555543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.07  E-value=7.6e-06  Score=69.41  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=51.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|.|||+|.||++++..|++.|.+|++++|++++.+.+. .          .+.             ... +++++.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~----------~~~-------------~~~-~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-R----------LGC-------------DCF-MEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-H----------HTC-------------EEE-SSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-H----------CCC-------------eEe-cHHHhccC
Confidence            6899999999999999999999999999999998877652 1          111             121 34445589


Q ss_pred             cEEEEecccCH
Q 022407           86 DIIVEAIVESE   96 (297)
Q Consensus        86 D~Vi~~v~e~~   96 (297)
                      |+||.|+|-..
T Consensus       174 DiVInaTp~Gm  184 (269)
T 3phh_A          174 DLIINATSASL  184 (269)
T ss_dssp             SEEEECCTTCC
T ss_pred             CEEEEcccCCC
Confidence            99999987543

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=98.06  E-value=1.4e-05  Score=73.38  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             cEEEEECCChhHHHHH--HHHHH----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIA--QLGVM----D--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA--~~l~~----~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +||+|||+|..|....  ..++.    .  +.+|.++|+++++++......++..+.   .|         ..-+++.++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~---~~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE---LN---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH---HT---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH---cC---------CCeEEEEeC
Confidence            4899999999886532  22332    2  347999999999887654444433322   11         123467788


Q ss_pred             Cccc-ccCCcEEEEec
Q 022407           78 NLKD-LHSADIIVEAI   92 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v   92 (297)
                      |..+ +++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            8876 89999999885

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.06  E-value=1.2e-05  Score=69.83  Aligned_cols=101  Identities=18%  Similarity=0.268  Sum_probs=60.7

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE---ecC
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMD-G--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC---TSN   78 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (297)
                      +||+||| +|.+|.+++..|+.. +  .++.++|+++ +++..      .++  .....        ...+++.   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~------a~D--l~~~~--------~~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGV------AVD--LSHIP--------TAVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHH------HHH--HHTSC--------SSEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhH------HHH--hhCCC--------CCceEEEecCCCc
Confidence            5899999 899999999999875 5  5899999987 33211      111  11111        0112332   245


Q ss_pred             cccccCCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           79 LKDLHSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++++||+||.+...+              ..+.+++...+.++++ +++++.-|....
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvvtNPvd  122 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITNPVN  122 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHH
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEecCcch
Confidence            66799999999986321              1233444555777765 444443444333

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.06  E-value=3.9e-06  Score=70.74  Aligned_cols=38  Identities=21%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      +|+|||+|.||++++..|++.|. +|++++|++++++++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            79999999999999999999998 999999999876543

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.05  E-value=3.7e-06  Score=73.80  Aligned_cols=112  Identities=23%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+.+....             .+.+.              ...++++ ++.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-------------~~~~~--------------~~~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDL-------------KEKGC--------------VYTSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-------------HHTTC--------------EECCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhh-------------hhcCc--------------eecCHHHHHhh
Confidence            6899999999999999999999999999998754321             11221              2345666 899


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-+.++++++++ |++-=   .-..+.+.+... -.-.++..|.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~~g~i~gA~LDV~~  258 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQRGKFSGLGLDVFE  258 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHTTCEEEEEESCCT
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHHhCCceEEEEeCCC
Confidence            999999998766533322234445678898887 56532   335677776432 2234455443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.05  E-value=3.4e-06  Score=75.45  Aligned_cols=39  Identities=23%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|+|||+|.+|..+|..+...|.+|+++|+++++++.+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999887765

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.05  E-value=1.1e-05  Score=67.55  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ++||+|+|+|.||+.++..+.+.++++. ++|++++.                ..|             +.+.++++++.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~g-------------v~v~~dl~~l~   53 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TTP-------------YQQYQHIADVK   53 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------CC-------------SCBCSCTTTCT
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cCC-------------CceeCCHHHHh
Confidence            4799999999999999999998877755 57887651                112             24567777733


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++|+||++...+     .+...+.  +..+.-+++.|.+++.+
T Consensus        54 ~~DVvIDft~p~-----a~~~~~~--l~~g~~vVigTTG~s~e   89 (243)
T 3qy9_A           54 GADVAIDFSNPN-----LLFPLLD--EDFHLPLVVATTGEKEK   89 (243)
T ss_dssp             TCSEEEECSCHH-----HHHHHHT--SCCCCCEEECCCSSHHH
T ss_pred             CCCEEEEeCChH-----HHHHHHH--HhcCCceEeCCCCCCHH
Confidence            999999765321     2222333  44444344456677654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.04  E-value=2e-05  Score=69.41  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||..++..+.+. +++++ ++|+++++++.+.+.          .|.            ....+++++ +
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LGV------------EKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HTC------------SEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hCC------------CceeCCHHHHh
Confidence            5899999999999999998874 67766 889999887665221          121            135677776 5


Q ss_pred             c--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +  ++|+|+.|+|...+.. .+...+..   ...+++.-..+.+..
T Consensus        61 ~~~~~D~V~i~tp~~~h~~-~~~~al~~---gk~v~~EKP~~~~~~  102 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHSE-LVIACAKA---KKHVFCEKPLSLNLA  102 (344)
T ss_dssp             HCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESCSCSCHH
T ss_pred             cCCCCCEEEEcCCCcchHH-HHHHHHhc---CCeEEEECCCCCCHH
Confidence            4  7999999999877532 22222222   234665544455553

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.02  E-value=1.4e-05  Score=70.65  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=62.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.||..++..|..  ...+|++|||++++.+++.+.+..      ..|.           .+...+++++ 
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~ea  191 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEA  191 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHHH
Confidence            4689999999999999988753  356899999999988776432210      0010           1344566665 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++||+||.|+|....  ..++.  .+.+++++.|...+
T Consensus       192 v~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vg  226 (350)
T 1x7d_A          192 VKGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVG  226 (350)
T ss_dssp             HTTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECS
T ss_pred             HhcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECC
Confidence            7899999999997520  01111  13556666655433

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.01  E-value=6.3e-06  Score=71.24  Aligned_cols=40  Identities=18%  Similarity=0.126  Sum_probs=36.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -++|.|||+|.||++++..|++.|. +|++++|++++++.+
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3689999999999999999999998 999999999887665

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.00  E-value=9e-06  Score=70.71  Aligned_cols=92  Identities=24%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++|+|||+|.||..++..|.. . ..+|++|||+  +.+++.+.++..      .|.           .+... ++++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~------~g~-----------~~~~~-~~~e  179 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRR------CGV-----------PARMA-APAD  179 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHH------HTS-----------CEEEC-CHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHh------cCC-----------eEEEe-CHHH
Confidence            35789999999999999999876 3 4689999999  444443332211      121           12344 6665


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                       +++||+||.|+|....    ++.  .+++++++.|....|
T Consensus       180 av~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          180 IAAQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGS  214 (313)
T ss_dssp             HHHHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCC
T ss_pred             HHhhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCC
Confidence             7899999999986432    221  245677777664444

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.99  E-value=4.1e-05  Score=67.67  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGS-GIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||. .++..+.+. +++|+ ++|+++++.+.+.+.          .|             +...+++++
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~~   83 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FG-------------GEPVEGYPA   83 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HC-------------SEEEESHHH
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CCCcCCHHH
Confidence            46899999999998 788888877 77876 889999877654211          12             134467776


Q ss_pred             -cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...+.. .+...++.   ...+++--..+...+
T Consensus        84 ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---Gk~Vl~EKP~a~~~~  127 (350)
T 3rc1_A           84 LLERDDVDAVYVPLPAVLHAE-WIDRALRA---GKHVLAEKPLTTDRP  127 (350)
T ss_dssp             HHTCTTCSEEEECCCGGGHHH-HHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HhcCCCCCEEEECCCcHHHHH-HHHHHHHC---CCcEEEeCCCCCCHH
Confidence             43  5899999999887642 22222322   233665444455543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.99  E-value=2.6e-05  Score=70.05  Aligned_cols=85  Identities=26%  Similarity=0.386  Sum_probs=59.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+           ...|.             .. .++++ ++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-----------~~~G~-------------~v-~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-----------CMDGF-------------RL-VKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-----------HHcCC-------------Ee-ccHHHHHhc
Confidence            689999999999999999999999999999998754433           22231             12 34555 889


Q ss_pred             CcEEEEecccCHH-HHHHHHHHHHhhccCCeEEeecCC
Q 022407           85 ADIIVEAIVESED-VKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +|+|+.| +.... +..    +.-+.++++++++ |++
T Consensus       276 ADIVi~a-tgt~~lI~~----e~l~~MK~gailI-Nvg  307 (435)
T 3gvp_A          276 VDIVITC-TGNKNVVTR----EHLDRMKNSCIVC-NMG  307 (435)
T ss_dssp             CSEEEEC-SSCSCSBCH----HHHHHSCTTEEEE-ECS
T ss_pred             CCEEEEC-CCCcccCCH----HHHHhcCCCcEEE-Eec
Confidence            9999997 33222 112    2234567788776 444

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.98  E-value=6.4e-05  Score=66.15  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             CcEEEEECCChhHHHHHHHHH-H-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-M-DGLDV-WLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..||+|||+|.||..++..+. + .|++| .++|+++++++.+           .+. |.            ....++++
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~-----------a~~~g~------------~~~~~~~~   64 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWA-----------KNELGV------------ETTYTNYK   64 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHH-----------HHTTCC------------SEEESCHH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHH-----------HHHhCC------------CcccCCHH
Confidence            469999999999999999988 4 47774 5889999877654           221 21            13456676


Q ss_pred             c-cc--CCcEEEEecccCHH
Q 022407           81 D-LH--SADIIVEAIVESED   97 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~   97 (297)
                      + ++  ++|+|++|+|...+
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHhH
Confidence            6 44  69999999998765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.98  E-value=4e-06  Score=74.70  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC-
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN-   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-   78 (297)
                      |+.+.|||.|+|+|.+|+.+|..|++ .++|++.|++.++++++.           +.  .         ..+.. .+| 
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-----------~~--~---------~~~~~d~~d~   68 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-----------EF--A---------TPLKVDASNF   68 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-----------TT--S---------EEEECCTTCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-----------cc--C---------CcEEEecCCH
Confidence            55556899999999999999988865 589999999998877651           11  0         11111 122 


Q ss_pred             --ccc-ccCCcEEEEecccCH
Q 022407           79 --LKD-LHSADIIVEAIVESE   96 (297)
Q Consensus        79 --~~~-~~~aD~Vi~~v~e~~   96 (297)
                        +.+ ++++|+||.|+|...
T Consensus        69 ~~l~~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           69 DKLVEVMKEFELVIGALPGFL   89 (365)
T ss_dssp             HHHHHHHTTCSEEEECCCGGG
T ss_pred             HHHHHHHhCCCEEEEecCCcc
Confidence              223 689999999998764

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.97  E-value=2.5e-05  Score=67.98  Aligned_cols=68  Identities=15%  Similarity=0.229  Sum_probs=51.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..||+|||+|.||..++..|.+. ++++ .++|+++++++.+           .+              .+...+++++ 
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~-----------~~--------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALV-----------PP--------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTC-----------CT--------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHH-----------Hh--------------hCcccCCHHHH
Confidence            46899999999999999999885 6775 5999998765432           00              0345667766 


Q ss_pred             cc--CCcEEEEecccCHH
Q 022407           82 LH--SADIIVEAIVESED   97 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~   97 (297)
                      ++  ++|+|+.|+|...+
T Consensus        65 l~~~~~D~V~i~tp~~~h   82 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATH   82 (315)
T ss_dssp             HTCTTCCEEEEESCGGGH
T ss_pred             hhCCCCCEEEEeCChHHH
Confidence            53  79999999998765

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.96  E-value=2.3e-05  Score=69.52  Aligned_cols=75  Identities=17%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.++..||+|||+|.||.. ++..+.+. +++|. ++|+++++++.+           .++           .......+
T Consensus         1 M~M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-----------a~~-----------~~~~~~~~   58 (359)
T 3m2t_A            1 MSLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRV-----------HRF-----------ISDIPVLD   58 (359)
T ss_dssp             --CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGG-----------GGT-----------SCSCCEES
T ss_pred             CCCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HHh-----------cCCCcccC
Confidence            5444579999999999985 78888765 77776 889999876554           111           11234667


Q ss_pred             Cccc-cc--CCcEEEEecccCHH
Q 022407           78 NLKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                      |+++ ++  +.|+|+.|+|...+
T Consensus        59 ~~~~ll~~~~vD~V~i~tp~~~H   81 (359)
T 3m2t_A           59 NVPAMLNQVPLDAVVMAGPPQLH   81 (359)
T ss_dssp             SHHHHHHHSCCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            8777 44  56999999997665

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.96  E-value=6e-05  Score=65.79  Aligned_cols=71  Identities=13%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-   82 (297)
                      .||+|||+|.||. .++..|.+. +++|+++|+++++.+++.+          +.|..           ..+.++.+.+ 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~----------~~g~~-----------~~~~~~~~~l~   61 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLAT----------RYRVS-----------ATCTDYRDVLQ   61 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHH----------HTTCC-----------CCCSSTTGGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH----------HcCCC-----------ccccCHHHHhh
Confidence            5899999999998 488888764 7788899999988765421          11210           0123333445 


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+|++|+|...+
T Consensus        62 ~~~D~V~i~tp~~~h   76 (323)
T 1xea_A           62 YGVDAVMIHAATDVH   76 (323)
T ss_dssp             GCCSEEEECSCGGGH
T ss_pred             cCCCEEEEECCchhH
Confidence            689999999997764

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.96  E-value=0.00014  Score=63.16  Aligned_cols=105  Identities=15%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC--
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN--   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--   78 (297)
                      +||+|+|+ |.+|..++..|+..|+  ++.++|+  ++++++.....+.+..   ...+         ....+...++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~---~~~~---------~~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTR---------SDANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSC---------CCCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH---HhcC---------CCeEEEeCCcch
Confidence            48999999 9999999999998885  6899999  7655443222222210   0000         0112333333  


Q ss_pred             cccccCCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           79 LKDLHSADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      .+++++||+||.+.  |..            ....+.+.+.+.+++  +.+++..|+...
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~  126 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVD  126 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHH
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHH
Confidence            45699999999876  211            122344555666776  555443444433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.92  E-value=7e-05  Score=65.97  Aligned_cols=96  Identities=11%  Similarity=0.202  Sum_probs=62.8

Q ss_pred             cEEEEECCChhHHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-M-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||..++..+. + .+++|. ++|+++++++.+.+          +.|.           .....+++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~----------~~g~-----------~~~~~~~~~~l   61 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE----------QYQL-----------NATVYPNDDSL   61 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHH----------HTTC-----------CCEEESSHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-----------CCeeeCCHHHH
Confidence            58999999999999999988 4 477766 88999988766521          1121           1246677777 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  ++|+|+.|+|...+.. .+...+..   ...+++.-..+.+.+
T Consensus        62 l~~~~~D~V~i~tp~~~h~~-~~~~al~~---Gk~vl~EKP~a~~~~  104 (344)
T 3mz0_A           62 LADENVDAVLVTSWGPAHES-SVLKAIKA---QKYVFCEKPLATTAE  104 (344)
T ss_dssp             HHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSCSCSSHH
T ss_pred             hcCCCCCEEEECCCchhHHH-HHHHHHHC---CCcEEEcCCCCCCHH
Confidence            44  4999999999877632 22222222   234555444455543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.91  E-value=2.5e-05  Score=68.40  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |..+..||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+           .++..           .-...++
T Consensus         1 M~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~-----------a~~~~-----------~~~~~~~   58 (329)
T 3evn_A            1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAF-----------ANKYH-----------LPKAYDK   58 (329)
T ss_dssp             ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CCC-----------CSCEESC
T ss_pred             CCCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-----------HHHcC-----------CCcccCC
Confidence            554557999999999999999988765 45555 889998765443           11111           0125677


Q ss_pred             ccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           79 LKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +++ ++  ++|+|+.|+|...+.. .+...+..   ...+++.-..+.+.+
T Consensus        59 ~~~ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---Gk~Vl~EKP~a~~~~  105 (329)
T 3evn_A           59 LEDMLADESIDVIYVATINQDHYK-VAKAALLA---GKHVLVEKPFTLTYD  105 (329)
T ss_dssp             HHHHHTCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHHH-HHHHHHHC---CCeEEEccCCcCCHH
Confidence            776 55  7999999999877532 22222222   234666555555553

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.90  E-value=3.7e-05  Score=67.18  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .++|+|||+|.||..++..|+.  ...+|.+|||++++.+++.+.+..       .+ +          .+. .+++++ 
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~  185 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEA  185 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHH
Confidence            4689999999999999999886  356899999999988876443221       11 1          123 556655 


Q ss_pred             ccCCcEEEEecccC
Q 022407           82 LHSADIIVEAIVES   95 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~   95 (297)
                      + ++|+||.|+|..
T Consensus       186 v-~aDvVi~aTp~~  198 (322)
T 1omo_A          186 S-RCDVLVTTTPSR  198 (322)
T ss_dssp             T-SSSEEEECCCCS
T ss_pred             h-CCCEEEEeeCCC
Confidence            7 999999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.90  E-value=1.8e-05  Score=67.55  Aligned_cols=72  Identities=10%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc--
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL--   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--   82 (297)
                      .++|.|+|+|.||++++..|++.|.+|++++|+.++++.+.+.+.       ..+            .+.. .+.+++  
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~-------~~~------------~~~~-~~~~~~~~  178 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQA-VSMDSIPL  178 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCCC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcc-------ccC------------CeEE-eeHHHhcc
Confidence            368999999999999999999999999999999988776533211       001            1112 123344  


Q ss_pred             cCCcEEEEecccCH
Q 022407           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.++|...
T Consensus       179 ~~~DivIn~t~~~~  192 (272)
T 1p77_A          179 QTYDLVINATSAGL  192 (272)
T ss_dssp             SCCSEEEECCCC--
T ss_pred             CCCCEEEECCCCCC
Confidence            38999999998644

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.89  E-value=8.5e-05  Score=64.99  Aligned_cols=70  Identities=10%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             cEEEEECCChhHHHH-HHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGI-AQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~i-A~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||..+ +..+.+.|++|. ++|+++++.+.+.+          +.|..            ...+++++ +
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~----------~~g~~------------~~~~~~~~~l   58 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYAT----------ENGIG------------KSVTSVEELV   58 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HTTCS------------CCBSCHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHH----------HcCCC------------cccCCHHHHh
Confidence            379999999999998 777777888865 88999987665421          11210            13456665 4


Q ss_pred             c--CCcEEEEecccCHH
Q 022407           83 H--SADIIVEAIVESED   97 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~   97 (297)
                      +  ++|+|+.|+|...+
T Consensus        59 ~~~~~D~V~i~tp~~~h   75 (332)
T 2glx_A           59 GDPDVDAVYVSTTNELH   75 (332)
T ss_dssp             TCTTCCEEEECSCGGGH
T ss_pred             cCCCCCEEEEeCChhHh
Confidence            4  59999999997765

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.86  E-value=8.3e-05  Score=65.30  Aligned_cols=106  Identities=13%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      -||+|+|+ |.+|.+++..|+....       ++.++|+++..  ++...-.        ++...+      .....+..
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D--------L~~~~~------~~~~~~~~   90 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE--------LEDCAF------PLLDKVVV   90 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHHTTC------TTEEEEEE
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh--------hhhcCc------cCCCcEEE
Confidence            38999997 9999999999998654       79999997642  2211111        111111      11123445


Q ss_pred             ecCcc-cccCCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           76 TSNLK-DLHSADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        76 ~~~~~-~~~~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .++.. ++++||+||.+.  |-+            ..+.+.+...|.++++++++++..|..+.+
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~  155 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANT  155 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcch
Confidence            55554 489999999865  221            223444555577788788765544444443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.85  E-value=5e-05  Score=58.24  Aligned_cols=81  Identities=11%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.+|..++.+|.+.||+  +|+++++. +.                          ...+.+..+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~   72 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVL   72 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGG
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHH
Confidence            368999999    79999999999999997  56666542 00                          01235666777


Q ss_pred             cc-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ ...|+++.++|.+  ...+++.++.+.-. ..++.
T Consensus        73 ~l~~~vDlvvi~vp~~--~~~~vv~~~~~~gi-~~i~~  107 (144)
T 2d59_A           73 DIPDKIEVVDLFVKPK--LTMEYVEQAIKKGA-KVVWF  107 (144)
T ss_dssp             GCSSCCSEEEECSCHH--HHHHHHHHHHHHTC-SEEEE
T ss_pred             HcCCCCCEEEEEeCHH--HHHHHHHHHHHcCC-CEEEE
Confidence            74 4799999999863  34566666554322 34554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.85  E-value=5.7e-06  Score=73.97  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++++++.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~  207 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL  207 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999887665

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.84  E-value=5.2e-05  Score=67.13  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.||..+|..|...|.+|+++|++++++++.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999998876654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.84  E-value=3.9e-05  Score=65.59  Aligned_cols=71  Identities=11%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|+|+|.||++++..|++.|. +|++++|++++.+++.+.+.       ..+            .+... ++++ ..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~~-~~~~l~~  186 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKAQ-AFEQLKQ  186 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEE-EGGGCCS
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeEe-eHHHhcC
Confidence            689999999999999999999996 99999999988776533221       111            11222 2333 26


Q ss_pred             CCcEEEEecccCH
Q 022407           84 SADIIVEAIVESE   96 (297)
Q Consensus        84 ~aD~Vi~~v~e~~   96 (297)
                      ++|+||.|+|...
T Consensus       187 ~aDiIInaTp~gm  199 (281)
T 3o8q_A          187 SYDVIINSTSASL  199 (281)
T ss_dssp             CEEEEEECSCCCC
T ss_pred             CCCEEEEcCcCCC
Confidence            8999999998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.83  E-value=1.6e-05  Score=70.85  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=36.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999877654

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.82  E-value=2.9e-05  Score=59.28  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=56.5

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    |.+|..++.+|.+.||+  +|++|+.+...                         ....+.+..+++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~   65 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLL   65 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGG
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHH
Confidence            368999999    89999999999999997  67777652100                         012235667777


Q ss_pred             cc-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ ...|+++.++|.+  ...+++.++.+.-.+ .++.
T Consensus        66 el~~~vDlavi~vp~~--~~~~v~~~~~~~gi~-~i~~  100 (140)
T 1iuk_A           66 DLKEPVDILDVFRPPS--ALMDHLPEVLALRPG-LVWL  100 (140)
T ss_dssp             GCCSCCSEEEECSCHH--HHTTTHHHHHHHCCS-CEEE
T ss_pred             HCCCCCCEEEEEeCHH--HHHHHHHHHHHcCCC-EEEE
Confidence            74 5699999999863  344556665543333 4444

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.82  E-value=4.6e-05  Score=64.87  Aligned_cols=39  Identities=10%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.||++++..|++.|.+|++++|++++++.+
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l  158 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL  158 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999887665

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.82  E-value=6.7e-05  Score=63.80  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||+|.||++++..|+..|. +|++++|+.++.+.+.+.+          +.             .+..+.. +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence            589999999999999999999997 8999999998877653221          10             1222222 467


Q ss_pred             CcEEEEecccCH
Q 022407           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||.|+|...
T Consensus       176 ~DivInaTp~gm  187 (271)
T 1npy_A          176 ADILVNVTSIGM  187 (271)
T ss_dssp             CSEEEECSSTTC
T ss_pred             CCEEEECCCCCc
Confidence            999999998544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.79  E-value=6.3e-05  Score=64.38  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|+|+|-+|++++..|+..|. +|++++|+.++.+.+.+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            689999999999999999999999 6999999999887765544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.79  E-value=6.9e-06  Score=70.09  Aligned_cols=38  Identities=13%  Similarity=0.082  Sum_probs=34.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~   43 (297)
                      ++|.|+|+|.||++++..|++.|. +|++++|++++.++
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            589999999999999999999999 99999999876543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.78  E-value=0.00028  Score=63.88  Aligned_cols=151  Identities=17%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-------Chhhhcc--cCCce
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL-------SQAMGTD--APRRL   73 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~--~~~~i   73 (297)
                      ..||||||+|.||..++..+... +.+|. ++|+++++++.+.+...         |.-       +..+...  .....
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~y---------G~~~~~~~~~~~~~i~~a~~~g~~   93 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAY---------GDEENAREATTESAMTRAIEAGKI   93 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHH---------SSSTTEEECSSHHHHHHHHHTTCE
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhc---------CCccccccccchhhhhhhhccCCc
Confidence            35899999999999999887653 56644 88999988776532210         100       0000000  01234


Q ss_pred             EEecCccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH---HHhhhcCCCCeEEEeecCCCC
Q 022407           74 RCTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---RLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        74 ~~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      .+++|+++ ++  +.|+|++++|....-.+.....++.   ...+++.+. .+...   ++.+.......          
T Consensus        94 ~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~A---GKHVv~~nk-~l~~~eg~eL~~~A~e~Gv----------  159 (446)
T 3upl_A           94 AVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRN---GKHLVMMNV-EADVTIGPYLKAQADKQGV----------  159 (446)
T ss_dssp             EEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHT---TCEEEECCH-HHHHHHHHHHHHHHHHHTC----------
T ss_pred             eEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHc---CCcEEecCc-ccCHHHHHHHHHHHHHhCC----------
Confidence            57788876 44  5899999998643212223333332   233444332 22221   22222111011          


Q ss_pred             CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                            .+....+..+.....+.++.+.+|.+++.++
T Consensus       160 ------vl~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          160 ------IYSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ------CEEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ------eeeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence                  1222233456777777888888999998875

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.78  E-value=0.00014  Score=64.32  Aligned_cols=97  Identities=12%  Similarity=0.217  Sum_probs=63.5

Q ss_pred             CcEEEEECCChhHHHHHHHHH-H-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-M-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+|.||..++..+. . .+++|. ++|+++++++.+.+.          .|.           .....+++++
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~~   81 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDYHD   81 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSHHH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCHHH
Confidence            358999999999999999988 4 477766 899999887665211          121           1246677776


Q ss_pred             -cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...+.. .+...++.   ...+++.-..+.+.+
T Consensus        82 ll~~~~~D~V~i~tp~~~h~~-~~~~al~a---Gk~Vl~EKPla~~~~  125 (357)
T 3ec7_A           82 LINDKDVEVVIITASNEAHAD-VAVAALNA---NKYVFCEKPLAVTAA  125 (357)
T ss_dssp             HHHCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSSCSSHH
T ss_pred             HhcCCCCCEEEEcCCcHHHHH-HHHHHHHC---CCCEEeecCccCCHH
Confidence             44  5899999999877632 22222222   234565444455543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.77  E-value=5.9e-05  Score=66.06  Aligned_cols=96  Identities=18%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCCC--c-----EEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVMDGL--D-----VWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .+||+|+| +|.+|+.+|..|+..|.  +     +.++|+++.  +++.....+        .....      .....+.
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL--------~~~~~------~~~~~~~   68 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMEL--------QDCAL------PLLKDVI   68 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HHTCC------TTEEEEE
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhh--------Hhhhh------cccCCEE
Confidence            46899999 79999999999998887  6     999999752  333221111        11111      0112344


Q ss_pred             EecC-cccccCCcEEEEec--cc------------CHHHHHHHHHHHHhhccCCe
Q 022407           75 CTSN-LKDLHSADIIVEAI--VE------------SEDVKKKLFSELDKITKASA  114 (297)
Q Consensus        75 ~~~~-~~~~~~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~  114 (297)
                      ..++ .+++++||+||.+.  |.            +..+.+.+...+.++.+++.
T Consensus        69 ~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~  123 (333)
T 5mdh_A           69 ATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV  123 (333)
T ss_dssp             EESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             EcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            5544 45699999999865  21            12344556667778877765

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.77  E-value=8.4e-05  Score=63.26  Aligned_cols=77  Identities=17%  Similarity=0.371  Sum_probs=47.8

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |..+.+||+|+|+ |.||+.++..+. ..|++|. ++|++++....            .+.+.+.    ......+...+
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g------------~d~~~~~----g~~~~~v~~~~   64 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELA----GAGKTGVTVQS   64 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSS----SSSCCSCCEES
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhh------------hhHHHHc----CCCcCCceecC
Confidence            5444579999999 999999999876 4688877 88887642100            0001000    00011234566


Q ss_pred             Cccc-ccCCcEEEEecc
Q 022407           78 NLKD-LHSADIIVEAIV   93 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~   93 (297)
                      ++++ ++++|+||++.+
T Consensus        65 dl~~~l~~~DvVIDft~   81 (273)
T 1dih_A           65 SLDAVKDDFDVFIDFTR   81 (273)
T ss_dssp             CSTTTTTSCSEEEECSC
T ss_pred             CHHHHhcCCCEEEEcCC
Confidence            7766 678999997664

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.74  E-value=6e-05  Score=63.34  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|.|||+|.+|+.+|..|+.+|. +++++|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999998 899999987

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.72  E-value=0.00024  Score=63.11  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +..||+|||+|.||.. .+..+.+. +++|+ ++|++++++++             +.+            .....+|++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DLP------------DVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HCT------------TSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCcEECCHH
Confidence            3468999999999997 56666654 77775 88999875431             111            125677887


Q ss_pred             c-cc--CCcEEEEecccCHHH
Q 022407           81 D-LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~   98 (297)
                      + ++  +.|+|++|+|...+.
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H~   81 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATHA   81 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCChHHHH
Confidence            7 54  789999999987764

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.71  E-value=0.00018  Score=63.03  Aligned_cols=95  Identities=9%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG---LD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.||..++..+.+.+   ++ |.++|+++++++...+.          .|.            -...+|+++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~~------------~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HDI------------PKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HTC------------SCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cCC------------CcccCCHHH
Confidence            58999999999999998887654   34 55889999887665221          121            025677776


Q ss_pred             -cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++  +.|+|+.|+|...+.. .+...++.   ...+++.-..+.+.+
T Consensus        61 ll~~~~vD~V~i~tp~~~H~~-~~~~al~~---GkhVl~EKP~a~~~~  104 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHKA-AVMLCLAA---GKAVLCEKPMGVNAA  104 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHHH-HHHHHHHT---TCEEEEESSSSSSHH
T ss_pred             HhcCCCCCEEEECCCcHHHHH-HHHHHHhc---CCEEEEECCCCCCHH
Confidence             44  6999999999887632 22222322   234666555555553

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.71  E-value=3.2e-05  Score=69.79  Aligned_cols=71  Identities=27%  Similarity=0.356  Sum_probs=50.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      -++|+|||+|.||..++..+...|. +|+++|+++++++...+          +.|.           .....+++.+ +
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~----------~~g~-----------~~~~~~~l~~~l  225 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR----------DLGG-----------EAVRFDELVDHL  225 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----------HHTC-----------EECCGGGHHHHH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----------HcCC-----------ceecHHhHHHHh
Confidence            3689999999999999999999998 89999999987644311          1121           0000123333 6


Q ss_pred             cCCcEEEEecccCH
Q 022407           83 HSADIIVEAIVESE   96 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~   96 (297)
                      .++|+||.|++...
T Consensus       226 ~~aDvVi~at~~~~  239 (404)
T 1gpj_A          226 ARSDVVVSATAAPH  239 (404)
T ss_dssp             HTCSEEEECCSSSS
T ss_pred             cCCCEEEEccCCCC
Confidence            78999999987654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.70  E-value=0.00024  Score=62.87  Aligned_cols=73  Identities=12%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.++..||+|||+|.||.. .+..+.+. +++|+ ++|+++++..+             +.+            .....+
T Consensus         1 M~m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~   55 (358)
T 3gdo_A            1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DFP------------DAEVVH   55 (358)
T ss_dssp             -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HCT------------TSEEES
T ss_pred             CCCCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hCC------------CCceEC
Confidence            5434569999999999997 56666554 77765 88999865221             111            135677


Q ss_pred             Cccc-cc--CCcEEEEecccCHHH
Q 022407           78 NLKD-LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~   98 (297)
                      |+++ ++  +.|+|++|+|...+.
T Consensus        56 ~~~~ll~~~~vD~V~i~tp~~~H~   79 (358)
T 3gdo_A           56 ELEEITNDPAIELVIVTTPSGLHY   79 (358)
T ss_dssp             STHHHHTCTTCCEEEECSCTTTHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHHH
Confidence            8877 54  789999999988763

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.69  E-value=8.3e-05  Score=64.87  Aligned_cols=92  Identities=11%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||..++..+.+. +.++ .++|+++++  .+            .             ..+...+++++ +
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~-------------~gv~~~~d~~~ll   56 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------K-------------TPVFDVADVDKHA   56 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------S-------------SCEEEGGGGGGTT
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------c-------------CCCceeCCHHHHh
Confidence            5899999999999999998876 5664 588988553  11            0             01345566666 4


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHH
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      .++|+||+|+|...+. ..+...++.   ...++++.+.+++..++
T Consensus        57 ~~~DvViiatp~~~h~-~~~~~al~a---G~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           57 DDVDVLFLCMGSATDI-PEQAPKFAQ---FACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTCSEEEECSCTTTHH-HHHHHHHTT---TSEEECCCCCGGGHHHH
T ss_pred             cCCCEEEEcCCcHHHH-HHHHHHHHC---CCEEEECCCCcCCHHHH
Confidence            7899999999877642 222222322   33466655555555444

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.69  E-value=0.00015  Score=66.20  Aligned_cols=86  Identities=28%  Similarity=0.325  Sum_probs=60.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|.++|..|+..|.+|+++|+++.+...+           ...|.             .+ .+.++ ++.
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A-----------a~~g~-------------dv-~~lee~~~~  320 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA-----------TMEGL-------------QV-LTLEDVVSE  320 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EE-CCGGGTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-----------HHhCC-------------cc-CCHHHHHHh
Confidence            689999999999999999999999999999998876554           22231             22 34444 778


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +|+|+++......+..+    .-+.++++.+|+...
T Consensus       321 aDvVi~atG~~~vl~~e----~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          321 ADIFVTTTGNKDIIMLD----HMKKMKNNAIVCNIG  352 (488)
T ss_dssp             CSEEEECSSCSCSBCHH----HHTTSCTTEEEEESS
T ss_pred             cCEEEeCCCChhhhhHH----HHHhcCCCeEEEEcC
Confidence            99999876432222222    234567788776433

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.68  E-value=0.00012  Score=62.19  Aligned_cols=40  Identities=13%  Similarity=0.151  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~   45 (297)
                      +++.|+|+|.+|++++..|++.|. +|++++|++++.+++.
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            689999999999999999999996 9999999998877663

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.67  E-value=0.00028  Score=62.52  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             cEEEEECCChhHH-HHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.+|. .++..+...|++|+ ++|+++++++.+.+          +.|.            ....+|+++ +
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~----------~~~~------------~~~~~~~~~ll   84 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSA----------VYAD------------ARRIATAEEIL   84 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHH----------HSSS------------CCEESCHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHH----------HcCC------------CcccCCHHHHh
Confidence            5899999999995 56777777889855 88999988766521          1121            246678777 4


Q ss_pred             c--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           83 H--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +  +.|+|+.|+|...+. ..+...++.   ...+++--..+...+
T Consensus        85 ~~~~vD~V~I~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  126 (361)
T 3u3x_A           85 EDENIGLIVSAAVSSERA-ELAIRAMQH---GKDVLVDKPGMTSFD  126 (361)
T ss_dssp             TCTTCCEEEECCCHHHHH-HHHHHHHHT---TCEEEEESCSCSSHH
T ss_pred             cCCCCCEEEEeCChHHHH-HHHHHHHHC---CCeEEEeCCCCCCHH
Confidence            4  489999999977653 222222322   334666555555553

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.67  E-value=0.00011  Score=67.25  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .|||-|+|+|.+|..+|..|...||+|+++|.++++++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~   42 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLREL   42 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            4799999999999999999999999999999999988776

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.67  E-value=3.3e-05  Score=69.55  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=35.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|+|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            689999999999999999999999999999999876654

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.66  E-value=0.00017  Score=62.35  Aligned_cols=68  Identities=21%  Similarity=0.248  Sum_probs=45.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      ..||+|||+|.||..++..+.+ .++++. ++|+++++++.              .|.          . ....+++.+.
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~----------~-~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ----------P-FRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT----------T-SCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC----------C-cCCHHHHHhC
Confidence            3699999999999999999887 467877 79999875321              121          0 1223444444


Q ss_pred             cCCcEEEEecccCHH
Q 022407           83 HSADIIVEAIVESED   97 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~   97 (297)
                      .++|+||+|+|...+
T Consensus        64 ~~~DvViiatp~~~h   78 (304)
T 3bio_A           64 ESVDVALVCSPSREV   78 (304)
T ss_dssp             SSCCEEEECSCHHHH
T ss_pred             CCCCEEEECCCchhh
Confidence            789999999997665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.66  E-value=0.00024  Score=60.45  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++|.|.|+|.+|+.++..|++.|++|++.+|++++.+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   44 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI   44 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH
Confidence            4689999999999999999999999999999998765543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.65  E-value=0.00026  Score=58.64  Aligned_cols=90  Identities=9%  Similarity=-0.020  Sum_probs=59.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec---C---
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS---N---   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~---   78 (297)
                      .++|.|+|+|.+|..+|..|.+.|+ |+++|+++++++.+           . .|..            ....   +   
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~-----------~-~~~~------------~i~gd~~~~~~   63 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL-----------R-SGAN------------FVHGDPTRVSD   63 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH-----------H-TTCE------------EEESCTTCHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH-----------h-cCCe------------EEEcCCCCHHH
Confidence            3689999999999999999999999 99999999877654           2 2210            1111   1   


Q ss_pred             cc-c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCC-eEEeecCC
Q 022407           79 LK-D-LHSADIIVEAIVESEDVKKKLFSELDKITKAS-AILASNTS  121 (297)
Q Consensus        79 ~~-~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts  121 (297)
                      +. . +.+||.||.+++++...  .......+...++ .+++...+
T Consensus        64 l~~a~i~~ad~vi~~~~~d~~n--~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           64 LEKANVRGARAVIVDLESDSET--IHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             HHHTTCTTCSEEEECCSCHHHH--HHHHHHHHHHCSSSEEEEECSS
T ss_pred             HHhcCcchhcEEEEcCCCcHHH--HHHHHHHHHHCCCCeEEEEECC
Confidence            11 2 67899999999876432  2222333333444 56664443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.63  E-value=0.00018  Score=62.99  Aligned_cols=96  Identities=13%  Similarity=0.204  Sum_probs=61.7

Q ss_pred             CcEEEEECCChhHH-HHHHHHHHCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGS-GIAQLGVMDGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~-~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..||+|||+|.+|. .++..+...|++| .++|+++++.+.+.+          +.+.            ....+|+++ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~----------~~~~------------~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTS----------LFPS------------VPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHH----------HSTT------------CCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHH----------hcCC------------CcccCCHHHH
Confidence            36899999999996 6777777788985 599999987665421          1111            235567776 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  +.|+|++|+|...+. ..+...+..   ...+++.-..+.+.+
T Consensus        62 l~~~~~D~V~i~tp~~~h~-~~~~~al~a---GkhVl~EKP~a~~~~  104 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDRA-ELALRTLDA---GKDFFTAKPPLTTLE  104 (336)
T ss_dssp             HTCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             hhCCCCCEEEEeCChhhHH-HHHHHHHHC---CCcEEEeCCCCCCHH
Confidence            44  689999999987763 222222322   223565444445443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.62  E-value=8.8e-05  Score=60.71  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||.|.|+ |.+|+.++..|++.|++|++++|++++++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            47999998 999999999999999999999999887654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.60  E-value=0.00046  Score=56.73  Aligned_cols=129  Identities=21%  Similarity=0.172  Sum_probs=75.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|.|||+|.+|..-+..|.++|.+|++++.+... ++.           +.+.+.+.-         +.-.-..+++.+
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-----------l~~~~~i~~---------i~~~~~~~dL~~   91 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-----------WEAKGQLRV---------KRKKVGEEDLLN   91 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-----------HHHTTSCEE---------ECSCCCGGGSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHHcCCcEE---------EECCCCHhHhCC
Confidence            68999999999999999999999999999876432 222           233443210         001112345889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCCCCh
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGADTS  162 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~~~~  162 (297)
                      +|+||.+.. +.++...+    ...++.+..+  |...-           |+.   ..|+.|.-  ..++.--+.+.+.+
T Consensus        92 adLVIaAT~-d~~~N~~I----~~~ak~gi~V--NvvD~-----------p~~---~~f~~Paiv~rg~l~iaIST~G~s  150 (223)
T 3dfz_A           92 VFFIVVATN-DQAVNKFV----KQHIKNDQLV--NMASS-----------FSD---GNIQIPAQFSRGRLSLAISTDGAS  150 (223)
T ss_dssp             CSEEEECCC-CTHHHHHH----HHHSCTTCEE--EC----------------C---CSEECCEEEEETTEEEEEECTTSC
T ss_pred             CCEEEECCC-CHHHHHHH----HHHHhCCCEE--EEeCC-----------ccc---CeEEEeeEEEeCCEEEEEECCCCC
Confidence            999998764 44444333    3334433333  22211           111   12334431  23344445566678


Q ss_pred             HHHHHHHHHHHHH
Q 022407          163 DETFRATKALAER  175 (297)
Q Consensus       163 ~~~~~~~~~l~~~  175 (297)
                      |....+++.-++.
T Consensus       151 P~la~~iR~~ie~  163 (223)
T 3dfz_A          151 PLLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            8888888877765

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.60  E-value=0.00046  Score=61.11  Aligned_cols=74  Identities=8%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      ..||+|||+|.||..++..+... ++++ .++|+++++.+.+.+          +.|. .        ......+++++ 
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~----------~~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-C--------CCCeeeCCHHHH
Confidence            36899999999999999988875 6665 589999987655411          1121 0        01245667776 


Q ss_pred             cc--CCcEEEEecccCHH
Q 022407           82 LH--SADIIVEAIVESED   97 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~   97 (297)
                      ++  ++|+|++|+|...+
T Consensus        67 l~~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH   84 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH
T ss_pred             hcCCCCCEEEEcCChHHH
Confidence            43  69999999998775

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.59  E-value=0.00014  Score=62.04  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=36.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -+++.|+|+|.+|++++..|.+.|. +|++++|+.++++++
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3689999999999999999999998 899999999887654

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.57  E-value=0.00032  Score=61.92  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||.. .+..+.+. +++|. ++|+++++.++             ..            ......+|+++ 
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~l   62 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQML   62 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHHH
Confidence            58999999999997 66667665 67765 88999876431             01            11246678777 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  +.|+|++|+|...+.. .+...++.   ...+++--.-+.+..
T Consensus        63 l~~~~vD~V~i~tp~~~H~~-~~~~al~a---GkhV~~EKPla~~~~  105 (352)
T 3kux_A           63 FNDPSIDLIVIPTPNDTHFP-LAQSALAA---GKHVVVDKPFTVTLS  105 (352)
T ss_dssp             HHCSSCCEEEECSCTTTHHH-HHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             hcCCCCCEEEEeCChHHHHH-HHHHHHHC---CCcEEEECCCcCCHH
Confidence            44  5899999999887632 22222322   234555444455543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.57  E-value=0.00017  Score=63.92  Aligned_cols=97  Identities=11%  Similarity=0.158  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.++..||+|||+|.||.. .+..+.+. +++|+ ++|++++++.+                         ........+
T Consensus         1 M~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~   55 (362)
T 3fhl_A            1 MSLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVR   55 (362)
T ss_dssp             --CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEES
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceEC
Confidence            6555579999999999997 66666665 77775 88998764210                         011235677


Q ss_pred             Cccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           78 NLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      |+++ ++  +.|+|++|+|...+.. .+...++.   ...+++--.-+.+.+
T Consensus        56 ~~~~ll~~~~vD~V~i~tp~~~H~~-~~~~al~a---GkhVl~EKP~a~~~~  103 (362)
T 3fhl_A           56 SFKELTEDPEIDLIVVNTPDNTHYE-YAGMALEA---GKNVVVEKPFTSTTK  103 (362)
T ss_dssp             CSHHHHTCTTCCEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSCCSSHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHHH-HHHHHHHC---CCeEEEecCCCCCHH
Confidence            8877 54  4899999999877632 22222322   234665444455543

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.56  E-value=0.00024  Score=62.53  Aligned_cols=73  Identities=11%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .+.||||||+|.||.. ++..+... +.+|+ ++|+++++++++.++          .|.            -.+.+|++
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~------------~~~y~d~~   79 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------FSV------------PHAFGSYE   79 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------HTC------------SEEESSHH
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cCC------------CeeeCCHH
Confidence            4569999999999975 45566654 66766 889999987765221          121            13567887


Q ss_pred             c-c--cCCcEEEEecccCHHH
Q 022407           81 D-L--HSADIIVEAIVESEDV   98 (297)
Q Consensus        81 ~-~--~~aD~Vi~~v~e~~~~   98 (297)
                      + +  .+.|+|+.|+|...+.
T Consensus        80 ell~~~~iDaV~I~tP~~~H~  100 (350)
T 4had_A           80 EMLASDVIDAVYIPLPTSQHI  100 (350)
T ss_dssp             HHHHCSSCSEEEECSCGGGHH
T ss_pred             HHhcCCCCCEEEEeCCCchhH
Confidence            7 4  4689999999988763

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.55  E-value=0.00029  Score=60.43  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=51.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +++.|+|+|.+|.++|..|++.| +|++++|+.++++.+.+.+....      +....       -.+...+-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~~~~-------~~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NKKFG-------EEVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TCCHH-------HHEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------ccccc-------eeEEEeeHHHhhCCC
Confidence            68999999999999999999999 99999999988776644432110      00000       001122212347789


Q ss_pred             cEEEEeccc
Q 022407           86 DIIVEAIVE   94 (297)
Q Consensus        86 D~Vi~~v~e   94 (297)
                      |+||.+.+.
T Consensus       195 DilVn~ag~  203 (287)
T 1nvt_A          195 DIIINATPI  203 (287)
T ss_dssp             CEEEECSCT
T ss_pred             CEEEECCCC
Confidence            999998864

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.53  E-value=0.00019  Score=63.59  Aligned_cols=110  Identities=7%  Similarity=0.026  Sum_probs=62.4

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-C
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGL--D---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-N   78 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~--~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~   78 (297)
                      .||+|+| +|.+|.++|..++..+.  +   +.++|.+.+..+...+...-.    ++.+..      .....++..+ +
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amD----L~h~~~------p~~~~v~i~~~~  102 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLY------PLLREVSIGIDP  102 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTC------TTEEEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHh----HHhhhh------hhcCCcEEecCC
Confidence            6899999 79999999999998876  3   777665443322211111101    222221      0112334443 4


Q ss_pred             cccccCCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           79 LKDLHSADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++++++||+||.+.  |-.            ..+.+.+...+.++..++++++..|..+.+
T Consensus       103 y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~  163 (375)
T 7mdh_A          103 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  163 (375)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhH
Confidence            66799999999864  211            122333444466665566766655554444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.53  E-value=0.00049  Score=62.52  Aligned_cols=75  Identities=16%  Similarity=0.080  Sum_probs=52.1

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||. .++..+.+. +++| .++|+++++.+.+.+          +.|. ..       ..+...+++++ 
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~----------~~g~-~~-------~~~~~~~~~~~l  145 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYGV-DP-------RKIYDYSNFDKI  145 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTTC-CG-------GGEECSSSGGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHH----------HhCC-Cc-------ccccccCCHHHH
Confidence            5899999999997 888888765 5675 589999987665411          1121 00       01234567776 


Q ss_pred             cc--CCcEEEEecccCHHH
Q 022407           82 LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~   98 (297)
                      ++  ++|+|++|+|...+.
T Consensus       146 l~~~~vD~V~iatp~~~h~  164 (433)
T 1h6d_A          146 AKDPKIDAVYIILPNSLHA  164 (433)
T ss_dssp             GGCTTCCEEEECSCGGGHH
T ss_pred             hcCCCCCEEEEcCCchhHH
Confidence            44  799999999987753

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.51  E-value=0.00032  Score=63.30  Aligned_cols=95  Identities=14%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD---------GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .||||||+|.||...+..+.+.         +.+|+ ++|+++++++++.+.          .|.            ..+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------~~~------------~~~   84 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------LGA------------EKA   84 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------HTC------------SEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------cCC------------CeE
Confidence            5899999999999888887764         34544 889999987765221          121            146


Q ss_pred             ecCccc-c--cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           76 TSNLKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        76 ~~~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      .+|+++ +  .+.|+|+.|+|...+. ..+...|+.   ...+++--.-+.+.+
T Consensus        85 y~d~~~ll~~~~vD~V~I~tp~~~H~-~~~~~al~a---GkhVl~EKP~a~~~~  134 (412)
T 4gqa_A           85 YGDWRELVNDPQVDVVDITSPNHLHY-TMAMAAIAA---GKHVYCEKPLAVNEQ  134 (412)
T ss_dssp             ESSHHHHHHCTTCCEEEECSCGGGHH-HHHHHHHHT---TCEEEEESCSCSSHH
T ss_pred             ECCHHHHhcCCCCCEEEECCCcHHHH-HHHHHHHHc---CCCeEeecCCcCCHH
Confidence            677777 4  3689999999988763 222233332   234666444444443

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.50  E-value=0.00098  Score=60.74  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=53.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec----C
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS----N   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~   78 (297)
                      ..||+|||+|.||...+..+... |++| .++|+++++++.+.+.+.       +.|.          ......+    |
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~~   82 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGNDD   82 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTTT
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCCC
Confidence            35899999999999999888774 6775 488999988776533211       1221          0123455    7


Q ss_pred             ccc-cc--CCcEEEEecccCHH
Q 022407           79 LKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        79 ~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                      +++ ++  +.|+|++|+|...+
T Consensus        83 ~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           83 YKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             HHHHTTCTTCCEEEECCCGGGH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHH
Confidence            776 54  58999999998775

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.50  E-value=0.00016  Score=61.33  Aligned_cols=100  Identities=15%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++||+|+| +|.||+.++..+.+. ++++. ++|++......            ...+.+.     .....+.+++|+++
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl~~   69 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDIER   69 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCHHH
Confidence            46999999 799999999988764 67766 47887532100            0011110     00113455677776


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       ++++|+||++.+.+.     ....+...+..+.-+++.|.+++.+
T Consensus        70 ll~~~DVVIDfT~p~a-----~~~~~~~al~~G~~vVigTTG~s~~  110 (272)
T 4f3y_A           70 VCAEADYLIDFTLPEG-----TLVHLDAALRHDVKLVIGTTGFSEP  110 (272)
T ss_dssp             HHHHCSEEEECSCHHH-----HHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred             HhcCCCEEEEcCCHHH-----HHHHHHHHHHcCCCEEEECCCCCHH
Confidence             678999999875322     2222333333344344455566654

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.47  E-value=0.00049  Score=61.54  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+| .||..++..+.+. +++|. ++|+++++.+.+.+.          .|             +...+|+++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YG-------------IPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HT-------------CCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cC-------------CCeECCHHHH
Confidence            589999999 9999999988875 56655 889999877654211          12             235677776 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      ++  +.|+|++|+|...+. ..+...++.   ...+++....+.+.+
T Consensus        60 l~~~~vD~V~i~tp~~~H~-~~~~~al~a---Gk~Vl~EKP~a~~~~  102 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFHC-EHVVQASEQ---GLHIIVEKPLTLSRD  102 (387)
T ss_dssp             HHHSCCSEEEECSCGGGHH-HHHHHHHHT---TCEEEECSCCCSCHH
T ss_pred             HcCCCCCEEEEcCCcHHHH-HHHHHHHHC---CCceeeeCCccCCHH
Confidence            44  599999999987753 222222332   234565444455543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.46  E-value=0.00026  Score=57.56  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      |||.|.|+ |.+|+.++..|++.|++|++++|++++++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            47999996 999999999999999999999999876554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.44  E-value=0.00035  Score=57.11  Aligned_cols=39  Identities=10%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHH-HCCCcEEEEeCCHH-HHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGV-MDGLDVWLVDTDPD-ALVR   43 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~-~~G~~V~~~d~~~~-~~~~   43 (297)
                      +++|.|.|+ |.+|..++..|+ +.|++|++.+|+++ +++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            346999996 999999999999 89999999999987 6544

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.43  E-value=0.0059  Score=51.21  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             eEEecC-cccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHh---hhcCCC-CeEEEeecCCCC
Q 022407           73 LRCTSN-LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLA---SATSRP-CQVIGMHFMNPP  147 (297)
Q Consensus        73 i~~~~~-~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~---~~~~~~-~~~~g~h~~~p~  147 (297)
                      +++++| .+.++++|++|...|-... ...+.+++.+++++++||+ ||.++++..+.   +.+.+. ..+..+||-.-|
T Consensus       129 VkVtsDD~EAvk~AEi~IlftPfG~~-t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVP  206 (358)
T 2b0j_A          129 LKVTSDDREAVEGADIVITWLPKGNK-QPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCVP  206 (358)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCTT-HHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred             cEeecchHHHhcCCCEEEEecCCCCC-cHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            455554 4559999999999987542 3478889999999999997 67777764333   334443 456677776655


Q ss_pred             CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      ...+.+-+-.+ -.+++.++++..+.+..|+.++.+.
T Consensus       207 gt~Gq~~~g~~-yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          207 EMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             TTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CCCCccccccc-cCCHHHHHHHHHHHHHhCCCeEecc
Confidence            44333333333 3678899999999999999999873

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.41  E-value=0.00072  Score=59.35  Aligned_cols=96  Identities=11%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             CcEEEEECCC-hhHHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGSG-QMGSGIAQLGVMD--GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ..||+|||+| .||...+..+.+.  +++| .++|+++++++++.+.          .|.            ....+|++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~~~------------~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VGN------------PAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HSS------------CEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------hCC------------CcccCCHH
Confidence            4689999999 8999999988875  4665 5899999887665221          121            14667777


Q ss_pred             c-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      + ++  +.|+|++|+|...+. ..+...++.   ...+++.-..+.+..
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~~  120 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELNL-PFIEKALRK---GVHVICEKPISTDVE  120 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGHH-HHHHHHHHT---TCEEEEESSSSSSHH
T ss_pred             HHhcCCCCCEEEEeCCchHHH-HHHHHHHHC---CCcEEEeCCCCCCHH
Confidence            6 43  689999999987753 222222332   234555444444443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.41  E-value=0.00037  Score=60.41  Aligned_cols=42  Identities=17%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~   47 (297)
                      +++.|+|+|-+|++++..|++.|. +|++++|+   .++++++.+.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~  200 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEK  200 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHH
Confidence            689999999999999999999998 89999999   7776665433

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.41  E-value=0.00023  Score=63.70  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=35.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|+|+|.+|...+..+...|.+|+++|+++++.+.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999998876654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.40  E-value=0.00016  Score=64.16  Aligned_cols=39  Identities=23%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|..++..+...|.+|+++|+++++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~  206 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL  206 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999887765

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.39  E-value=0.00026  Score=62.31  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             cEEEEECCChhHHHHHHH-H-H-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQL-G-V-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~-l-~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.||..+... + . ..+++|+ ++|+++++.+..           .+            ...+...+|+++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~------------~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-----------PI------------YSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS-----------GG------------GTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH-----------Hh------------cCCCceECCHHH
Confidence            589999999999874433 3 3 2477777 899987754221           01            112356778877


Q ss_pred             -cc--CCcEEEEecccCHHH
Q 022407           82 -LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        82 -~~--~aD~Vi~~v~e~~~~   98 (297)
                       ++  +.|+|+.|+|...+.
T Consensus        60 ll~~~~~D~V~i~tp~~~h~   79 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSHF   79 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGHH
T ss_pred             HhcCCCCCEEEEcCChHHHH
Confidence             54  489999999988763

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.39  E-value=0.0008  Score=61.22  Aligned_cols=73  Identities=15%  Similarity=0.077  Sum_probs=53.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMD--GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ..||+|||+    |.||..++..|.+.  +++| .++|+++++.+.+.+          +.|.          ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~----------~~g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQ----------RLKL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTTC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH----------HcCC----------CcceeeC
Confidence            368999999    99999999999886  7776 589999987665421          1121          1124567


Q ss_pred             Cccc-cc--CCcEEEEecccCHH
Q 022407           78 NLKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        78 ~~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                      ++++ ++  +.|+|++|+|...+
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~H  102 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVASH  102 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHHH
Confidence            7776 43  68999999997765

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.38  E-value=0.00038  Score=59.37  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=58.1

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|+| +|.||+.++..+.+ .++++. ++|+++.....            .+.|.+    .......+.+++|+++
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G------------~d~gel----~G~~~~gv~v~~dl~~   84 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD------------KDASIL----IGSDFLGVRITDDPES   84 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT------------SBGGGG----TTCSCCSCBCBSCHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------cchHHh----hccCcCCceeeCCHHH
Confidence            35899999 89999999998775 477755 66886431100            000000    0000123456778877


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                       +.++|+||+..+.+     ..+..+...+..+.-+++.|.+++.+
T Consensus        85 ll~~aDVvIDFT~p~-----a~~~~~~~~l~~Gv~vViGTTG~~~e  125 (288)
T 3ijp_A           85 AFSNTEGILDFSQPQ-----ASVLYANYAAQKSLIHIIGTTGFSKT  125 (288)
T ss_dssp             HTTSCSEEEECSCHH-----HHHHHHHHHHHHTCEEEECCCCCCHH
T ss_pred             HhcCCCEEEEcCCHH-----HHHHHHHHHHHcCCCEEEECCCCCHH
Confidence             78999999877422     22333333444444444455666653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.37  E-value=0.00067  Score=58.73  Aligned_cols=41  Identities=22%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~   46 (297)
                      +++.|+|+|-+|++++..|++.|. +|++++|+   .++++++.+
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~  193 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAK  193 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHH
Confidence            689999999999999999999998 89999999   666655533

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.33  E-value=0.00014  Score=59.58  Aligned_cols=40  Identities=28%  Similarity=0.514  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |.. +++|.|.|+ |.+|+.++..|++.|++|++.+|++++.
T Consensus         1 M~~-m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            1 MEK-VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             --C-CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCC-CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            543 479999996 9999999999999999999999997653

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.30  E-value=0.00014  Score=59.46  Aligned_cols=77  Identities=9%  Similarity=0.189  Sum_probs=46.4

Q ss_pred             cEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .+|+|||+|.+|..++..  +...|+++. ++|.++++....            -.|           -.+...+++++ 
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g-----------v~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE------------VGG-----------VPVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCE------------ETT-----------EEEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhH------------hcC-----------CeeechhhHHHH
Confidence            579999999999999994  445688766 889998753211            000           01223455555 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHH
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELD  107 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~  107 (297)
                      +++.|+||.|+|...  .+++...+.
T Consensus       143 i~~~D~ViIAvPs~~--~~ei~~~l~  166 (215)
T 2vt3_A          143 VKDESVAILTVPAVA--AQSITDRLV  166 (215)
T ss_dssp             CSSCCEEEECSCHHH--HHHHHHHHH
T ss_pred             HHhCCEEEEecCchh--HHHHHHHHH
Confidence            555599999998655  334554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.29  E-value=0.0016  Score=53.62  Aligned_cols=39  Identities=13%  Similarity=0.028  Sum_probs=35.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+|++++++..
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~   61 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL   61 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence            68999998 9999999999999999999999998876554

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.24  E-value=0.00037  Score=63.62  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=35.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|+.++..|++.|++|+++||++++++.+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~l   42 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   42 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHH
Confidence            3689999999999999999999999999999998776543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.24  E-value=0.0011  Score=57.90  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCH
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+++|.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999995 9999999999999999865

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.23  E-value=0.00071  Score=56.78  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            589999999999999999999998 789998764

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.22  E-value=0.0028  Score=55.58  Aligned_cols=86  Identities=17%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-Chhhh-cccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMG-TDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~~~   81 (297)
                      .||+|+|+|.+|+.++..+..+ +++|. +.|.+++....+.++-     .....|.+ ...+. ......+.+..+.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~d-----g~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEK-----GYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHT-----TCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhc-----CCccccccCCCceeecccCCeEEECCchHH
Confidence            5899999999999999998876 56755 5576655544432210     00000111 00000 000011223333444


Q ss_pred             -ccCCcEEEEecccCH
Q 022407           82 -LHSADIIVEAIVESE   96 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~   96 (297)
                       ..++|+|++|.+...
T Consensus        78 ~~~~vDiV~eatg~~~   93 (343)
T 2yyy_A           78 IIEDADIVVDGAPKKI   93 (343)
T ss_dssp             TGGGCSEEEECCCTTH
T ss_pred             hccCCCEEEECCCccc
Confidence             468999999998665

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00021  Score=65.49  Aligned_cols=40  Identities=13%  Similarity=0.061  Sum_probs=35.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|+|+|.+|+.++..|++. |++|++++|++++++.+
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            46899999999999999999988 79999999999877654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.19  E-value=0.0013  Score=56.94  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH--CCCcE-EEEeCCHHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVM--DGLDV-WLVDTDPDA   40 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~--~G~~V-~~~d~~~~~   40 (297)
                      |++ ..||+|||+|.+|..++..+.+  .+.++ .++|+++++
T Consensus         1 M~~-~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            1 MNQ-KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CCS-CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCC-CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            543 3689999999999999998865  35554 478998765

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.0013  Score=59.48  Aligned_cols=73  Identities=15%  Similarity=0.252  Sum_probs=50.6

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQ---MGSGIAQLGVMDG-LDVW--LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.   ||...+..+...+ ++|+  ++|+++++++++.+.          .|. .         ...+.+|+
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~~~   97 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGL-D---------PSRVYSDF   97 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTC-C---------GGGBCSCH
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCC-C---------cccccCCH
Confidence            5899999999   9999888877765 6765  679999887665221          121 0         01245677


Q ss_pred             cc-cc-------CCcEEEEecccCHHH
Q 022407           80 KD-LH-------SADIIVEAIVESEDV   98 (297)
Q Consensus        80 ~~-~~-------~aD~Vi~~v~e~~~~   98 (297)
                      ++ ++       +.|+|++|+|...+.
T Consensus        98 ~~ll~~~~~~~~~vD~V~I~tp~~~H~  124 (417)
T 3v5n_A           98 KEMAIREAKLKNGIEAVAIVTPNHVHY  124 (417)
T ss_dssp             HHHHHHHHHCTTCCSEEEECSCTTSHH
T ss_pred             HHHHhcccccCCCCcEEEECCCcHHHH
Confidence            66 44       489999999988763

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.15  E-value=0.00094  Score=57.18  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 799999876

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.14  E-value=0.0039  Score=56.85  Aligned_cols=34  Identities=29%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|.|||.|..|.+.|..|.+.|++|+++|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3799999999999999999999999999999865

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.13  E-value=0.0013  Score=59.00  Aligned_cols=73  Identities=16%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQ---MGSGIAQLGVMDG-LDVW--LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+.+.+          +.|. .         ...+.+|+
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~----------~~g~-~---------~~~~~~~~   72 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGE----------QLGV-D---------SERCYADY   72 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHH----------HTTC-C---------GGGBCSSH
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHH----------HhCC-C---------cceeeCCH
Confidence            5899999999   9999988877665 6766  57999988766521          1221 0         01245677


Q ss_pred             cc-cc-------CCcEEEEecccCHHH
Q 022407           80 KD-LH-------SADIIVEAIVESEDV   98 (297)
Q Consensus        80 ~~-~~-------~aD~Vi~~v~e~~~~   98 (297)
                      ++ ++       +.|+|+.|+|...+.
T Consensus        73 ~~ll~~~~~~~~~vD~V~i~tp~~~H~   99 (398)
T 3dty_A           73 LSMFEQEARRADGIQAVSIATPNGTHY   99 (398)
T ss_dssp             HHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred             HHHHhcccccCCCCCEEEECCCcHHHH
Confidence            66 43       489999999988763

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.08  E-value=0.0031  Score=57.98  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=53.2

Q ss_pred             cEEEEECC----ChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            6 KVMGVVGS----GQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~V~iiG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .||+|||+    |.||...+..|.+.  +++|+ ++|+++++++.+.+          +.|.          ......+|
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~----------~~g~----------~~~~~~~d   99 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE----------QLQL----------KHATGFDS   99 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH----------HTTC----------TTCEEESC
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH----------HcCC----------CcceeeCC
Confidence            58999999    99999999999875  77754 89999987766521          1121          11246677


Q ss_pred             ccc-c--cCCcEEEEecccCHH
Q 022407           79 LKD-L--HSADIIVEAIVESED   97 (297)
Q Consensus        79 ~~~-~--~~aD~Vi~~v~e~~~   97 (297)
                      +++ +  .+.|+|++|+|...+
T Consensus       100 ~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A          100 LESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             HHHHHHCTTCSEEEECSCHHHH
T ss_pred             HHHHhcCCCCCEEEEcCCcHHH
Confidence            776 4  369999999997765

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.08  E-value=0.0017  Score=58.81  Aligned_cols=86  Identities=21%  Similarity=0.297  Sum_probs=53.8

Q ss_pred             cEEEEECCChhHHHHHHHHHH----------CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM----------DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .||+|||+|.+|..++..+.+          .+++|. ++|+++++.+..           .. +             ..
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~~-~-------------~~   65 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------AG-G-------------LP   65 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------HT-T-------------CC
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------cc-c-------------Cc
Confidence            589999999999999877653          244444 778988764332           11 1             23


Q ss_pred             EecCccc-cc--CCcEEEEeccc-CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           75 CTSNLKD-LH--SADIIVEAIVE-SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        75 ~~~~~~~-~~--~aD~Vi~~v~e-~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++|+++ ++  +.|+|++|+|. ..+ ...+...|+.   ...+++.|.
T Consensus        66 ~~~d~~ell~d~diDvVve~tp~~~~h-~~~~~~AL~a---GKhVvtenk  111 (444)
T 3mtj_A           66 LTTNPFDVVDDPEIDIVVELIGGLEPA-RELVMQAIAN---GKHVVTANK  111 (444)
T ss_dssp             EESCTHHHHTCTTCCEEEECCCSSTTH-HHHHHHHHHT---TCEEEECCH
T ss_pred             ccCCHHHHhcCCCCCEEEEcCCCchHH-HHHHHHHHHc---CCEEEECCc
Confidence            6677776 43  68999999986 443 2223333332   334555454

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=97.07  E-value=0.00047  Score=57.03  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .|+|||+|.-|...|..|+++|++|+++|+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.06  E-value=0.00048  Score=57.00  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~   41 (297)
                      ++++|.|.|+ |.+|+.++..|++.| ++|++++|+++++
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            3578999995 999999999999999 8999999998753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.05  E-value=0.0038  Score=54.40  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~   38 (297)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            68999997 9999999999999996       899999975

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.01  E-value=0.0006  Score=59.58  Aligned_cols=84  Identities=20%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---------CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD---------GLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~---------G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .||+|||+|.||+.++..+.+.         +.+| .++|++.++.                ++ +.         .-.+
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------cccc
Confidence            5899999999999999998875         3454 4778875421                11 10         1135


Q ss_pred             ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ++|+++ + +.|+|++|.+........+.+.|+.   ...+++.|
T Consensus        58 ~~d~~~ll-~iDvVve~t~~~~~a~~~~~~AL~a---GKhVVtaN   98 (332)
T 2ejw_A           58 RAEPFDLL-EADLVVEAMGGVEAPLRLVLPALEA---GIPLITAN   98 (332)
T ss_dssp             ESSCCCCT-TCSEEEECCCCSHHHHHHHHHHHHT---TCCEEECC
T ss_pred             cCCHHHHh-CCCEEEECCCCcHHHHHHHHHHHHc---CCeEEECC
Confidence            677777 5 9999999998764333333333433   23455544

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.00  E-value=0.0034  Score=52.34  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTD   37 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~-~~d~~   37 (297)
                      +||+|+|+ |.||+.++..+... |++|. ++|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            38999997 99999999998765 89877 66654

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.99  E-value=0.0026  Score=55.05  Aligned_cols=70  Identities=10%  Similarity=-0.050  Sum_probs=50.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+ |.+|...+..+...+.+++ ++|+++++. .+           .           .......+.+++++ 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~-----------~-----------~~~~~~~~~~~~~~l   59 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LV-----------D-----------SFFPEAEFFTEPEAF   59 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GG-----------G-----------GTCTTCEEESCHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HH-----------H-----------hhCCCCceeCCHHHH
Confidence            468999999 7899999999998887754 889987642 11           0           11122356667665 


Q ss_pred             c----------cCCcEEEEecccCHH
Q 022407           82 L----------HSADIIVEAIVESED   97 (297)
Q Consensus        82 ~----------~~aD~Vi~~v~e~~~   97 (297)
                      +          .+.|+|+.|+|...+
T Consensus        60 l~~~~~l~~~~~~vD~V~I~tP~~~H   85 (312)
T 3o9z_A           60 EAYLEDLRDRGEGVDYLSIASPNHLH   85 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEEECSCGGGH
T ss_pred             HHHhhhhcccCCCCcEEEECCCchhh
Confidence            3          578999999998776

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.98  E-value=0.0014  Score=57.30  Aligned_cols=82  Identities=23%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---hhhhcc-cCCceEEecC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQ-LS---QAMGTD-APRRLRCTSN   78 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~---~~~~~~-~~~~i~~~~~   78 (297)
                      .||+|+|+|.||..++..+... +.+|. +.|++++.+..+.+          ..|. ..   +..... ....+.+..+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~----------~~g~~~~~~~~~~v~~~~~~~~~v~~d   72 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK----------ELGIPVYAASEEFIPRFEKEGFEVAGT   72 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH----------HTTCCEEESSGGGHHHHHHHTCCCSCB
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHH----------hcCccccccccccceeccCCceEEcCc
Confidence            5899999999999999998875 45654 67887666554321          1110 00   000000 0001233445


Q ss_pred             ccc-ccCCcEEEEecccCHH
Q 022407           79 LKD-LHSADIIVEAIVESED   97 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~   97 (297)
                      +++ +.++|+|++|.|...+
T Consensus        73 ~~~l~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           73 LNDLLEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HHHHHTTCSEEEECCSTTHH
T ss_pred             HHHhccCCCEEEECCCcccc
Confidence            555 5689999999998765

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.98  E-value=0.0005  Score=61.29  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            6899999999999999999999999999997543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.97  E-value=0.0038  Score=55.42  Aligned_cols=70  Identities=14%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             EEEEECCChhHHHHHHHHHH--------CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            7 VMGVVGSGQMGSGIAQLGVM--------DGLDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~--------~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ||||||+|.||..-+..+..        .+.+| .++|+++++++++.+.          .|.            -.+.+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~------------~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------FGF------------EKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------HTC------------SEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------hCC------------CeecC
Confidence            89999999999876665432        24554 4889999887765221          121            14677


Q ss_pred             Cccc-c--cCCcEEEEecccCHHH
Q 022407           78 NLKD-L--HSADIIVEAIVESEDV   98 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~~   98 (297)
                      |+++ +  .+.|+|+.|+|...+.
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            8777 4  4689999999988864

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.97  E-value=0.0028  Score=55.03  Aligned_cols=95  Identities=9%  Similarity=0.032  Sum_probs=60.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +.||+|||+ |.||...+..+...|.++. ++|+++++. .+           .           .......+.+++++ 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~-----------~-----------~~~~~~~~~~~~~~l   59 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-II-----------D-----------SISPQSEFFTEFEFF   59 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GG-----------G-----------GTCTTCEEESSHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HH-----------H-----------hhCCCCcEECCHHHH
Confidence            469999999 7999999999998887654 889887642 11           0           11122356667665 


Q ss_pred             c-----------cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH
Q 022407           82 L-----------HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT  126 (297)
Q Consensus        82 ~-----------~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~  126 (297)
                      +           .+.|+|+.|+|...+.. .+...++.   ...+++--.-+.+.+
T Consensus        60 l~~~~~l~~~~~~~vD~V~I~tP~~~H~~-~~~~al~a---GkhVl~EKPla~~~~  111 (318)
T 3oa2_A           60 LDHASNLKRDSATALDYVSICSPNYLHYP-HIAAGLRL---GCDVICEKPLVPTPE  111 (318)
T ss_dssp             HHHHHHHTTSTTTSCCEEEECSCGGGHHH-HHHHHHHT---TCEEEECSSCCSCHH
T ss_pred             HHhhhhhhhccCCCCcEEEECCCcHHHHH-HHHHHHHC---CCeEEEECCCcCCHH
Confidence            3           46899999999877632 22222332   234555444444443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.95  E-value=0.0046  Score=57.10  Aligned_cols=67  Identities=21%  Similarity=0.401  Sum_probs=46.8

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+++|.|||.|..|.+ +|..|.+.|++|+++|..+....          +.+.+.|.           .+....+.+.+
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~----------~~l~~~gi-----------~~~~g~~~~~~   79 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVT----------QHLTALGA-----------QIYFHHRPENV   79 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHH----------HHHHHTTC-----------EEESSCCGGGG
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHH----------HHHHHCCC-----------EEECCCCHHHc
Confidence            3579999999999995 89999999999999998754221          11234443           11122344457


Q ss_pred             cCCcEEEEe
Q 022407           83 HSADIIVEA   91 (297)
Q Consensus        83 ~~aD~Vi~~   91 (297)
                      .++|+||.+
T Consensus        80 ~~~d~vV~S   88 (494)
T 4hv4_A           80 LDASVVVVS   88 (494)
T ss_dssp             TTCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            889999986

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.93  E-value=0.0034  Score=55.35  Aligned_cols=33  Identities=21%  Similarity=0.539  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            589999999999999999999998 799999863

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=96.92  E-value=0.001  Score=58.61  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |+.....|.|||+|.+|.+.|..|+++|++|+++|+.
T Consensus         2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            4444468999999999999999999999999999974

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.91  E-value=0.00062  Score=57.41  Aligned_cols=70  Identities=10%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.|. +|.++|..|...|..|+++++...                                      ++++ ++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~--------------------------------------~L~~~~~  192 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTK--------------------------------------DIGSMTR  192 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------CHHHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcc--------------------------------------cHHHhhc
Confidence            6899999974 899999999999999999986422                                      2233 56


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .||+||.+++...-++.       .+++++++++...
T Consensus       193 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg  222 (276)
T 3ngx_A          193 SSKIVVVAVGRPGFLNR-------EMVTPGSVVIDVG  222 (276)
T ss_dssp             HSSEEEECSSCTTCBCG-------GGCCTTCEEEECC
T ss_pred             cCCEEEECCCCCccccH-------hhccCCcEEEEec
Confidence            79999999975332222       3457777776433

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.91  E-value=0.0007  Score=60.20  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..||+|||+| +|...+..+.+.  ++++. ++|+++++.++..          .+.|             +...+|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a----------~~~g-------------v~~~~~~~~   62 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELA----------HAFG-------------IPLYTSPEQ   62 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHH----------HHTT-------------CCEESSGGG
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHH----------HHhC-------------CCEECCHHH
Confidence            4689999999 798877777664  56766 8899998876652          1222             245678887


Q ss_pred             -ccCCcEEEEecccCHH
Q 022407           82 -LHSADIIVEAIVESED   97 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~   97 (297)
                       +++.|+|+.++|...+
T Consensus        63 l~~~~D~v~i~~p~~~h   79 (372)
T 4gmf_A           63 ITGMPDIACIVVRSTVA   79 (372)
T ss_dssp             CCSCCSEEEECCC--CT
T ss_pred             HhcCCCEEEEECCCccc
Confidence             7889999999987653

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.90  E-value=0.0025  Score=56.75  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=50.7

Q ss_pred             CCCCCcEEEEEC-CChhHHH-HH----HHHHHCC-CcE----------EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 022407            1 MEEKMKVMGVVG-SGQMGSG-IA----QLGVMDG-LDV----------WLVDTDPDALVRATKSISSSIQKFVSKGQLSQ   63 (297)
Q Consensus         1 M~~~~~~V~iiG-~G~mG~~-iA----~~l~~~G-~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~   63 (297)
                      |.++..||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++.+...+          +.|.   
T Consensus         2 ~~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~----------~~~~---   68 (383)
T 3oqb_A            2 LTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAK----------RFNI---   68 (383)
T ss_dssp             -CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHH----------HTTC---
T ss_pred             CCCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHH----------HhCC---
Confidence            444456899999 9999998 66    5555443 332          499999988766521          1221   


Q ss_pred             hhhcccCCceEEecCccc-cc--CCcEEEEecccCHH
Q 022407           64 AMGTDAPRRLRCTSNLKD-LH--SADIIVEAIVESED   97 (297)
Q Consensus        64 ~~~~~~~~~i~~~~~~~~-~~--~aD~Vi~~v~e~~~   97 (297)
                               -.+.+|+++ ++  +.|+|++|+|...+
T Consensus        69 ---------~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           69 ---------ARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ---------CCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ---------CcccCCHHHHhcCCCCCEEEECCCchHH
Confidence                     135677776 43  58999999998765

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.89  E-value=0.00074  Score=55.05  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |||.|.|+ |.+|+.++..|++.|++|++.+|++++.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            47999995 9999999999999999999999998643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.85  E-value=0.0011  Score=56.60  Aligned_cols=73  Identities=23%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +++.|||.|. +|.++|..|...|..|+++++....++.                                   .+.++.
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            6899999876 7999999999999999999974332220                                   012467


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ||+||.+++...-++.       .+++++++++...
T Consensus       211 ADIVI~Avg~p~~I~~-------~~vk~GavVIDvg  239 (300)
T 4a26_A          211 ADIVIAAMGQPGYVKG-------EWIKEGAAVVDVG  239 (300)
T ss_dssp             CSEEEECSCCTTCBCG-------GGSCTTCEEEECC
T ss_pred             CCEEEECCCCCCCCcH-------HhcCCCcEEEEEe
Confidence            9999999975332222       3457777776433

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.85  E-value=0.0051  Score=53.69  Aligned_cols=36  Identities=6%  Similarity=-0.100  Sum_probs=33.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      ++|.|+|+|..|..++..|.+.|+ |+++|+++++++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            479999999999999999999999 999999999876

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.85  E-value=0.0053  Score=53.66  Aligned_cols=149  Identities=18%  Similarity=0.272  Sum_probs=75.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeC--CHHHHHHHHHHHHHHHHHHHHcCCCC-hhh---hcc-c---CCce
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDT--DPDALVRATKSISSSIQKFVSKGQLS-QAM---GTD-A---PRRL   73 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~---~~~-~---~~~i   73 (297)
                      .||+|+|+|.+|+.+++.+..+ +++|. +.|+  +.+.+..+.++       .-..|.+. ..-   ... .   -..+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~y-------ds~~g~~~~~~v~~~~~~~l~~~g~~i   76 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKY-------DTVHGQWKHSDIKIKDSKTLLLGEKPV   76 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHC-------CTTTCCCCSSCEEESSSSEEEETTEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcc-------cccCCCCCCCcEEeecCCeeEECCeEE
Confidence            5899999999999999998876 55655 4453  44443333100       01123221 100   000 0   0122


Q ss_pred             EEe--cCcccc----cCCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCCccHHHHhhhcCCCCeEEEeecCC
Q 022407           74 RCT--SNLKDL----HSADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSSISITRLASATSRPCQVIGMHFMN  145 (297)
Q Consensus        74 ~~~--~~~~~~----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~  145 (297)
                      .+.  .+++++    .++|+||+|.|.....  +.   ...++..++  +|++.++.-          .|.-+.|   +|
T Consensus        77 ~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~~--e~---a~~~l~aGak~VVIs~pa~d----------~p~~V~g---vN  138 (337)
T 3e5r_O           77 TVFGIRNPDEIPWAEAGAEYVVESTGVFTDK--EK---AAAHLKGGAKKVVISAPSKD----------APMFVCG---VN  138 (337)
T ss_dssp             EEECCSCGGGCCHHHHTCSEEEECSSSCCSH--HH---HTHHHHTTCSEEEESSCCSS----------SCBCCTT---TT
T ss_pred             EEEecCChHHccccccCCCEEEECCCchhhH--HH---HHHHHHcCCCEEEEecCCCC----------CCEEEec---cC
Confidence            322  255655    4899999999876542  22   223334455  777666511          1111111   12


Q ss_pred             CCCCCcceeEecCCCChHHHHH-HHHHHHHHhCCe
Q 022407          146 PPPLMKLVEVIRGADTSDETFR-ATKALAERFGKT  179 (297)
Q Consensus       146 p~~~~~~vev~~~~~~~~~~~~-~~~~l~~~lG~~  179 (297)
                      +-.+.+...++..+++...... .+.++.+..|-.
T Consensus       139 ~~~~~~~~~iIsnpsCtt~~la~~lkpL~~~~gI~  173 (337)
T 3e5r_O          139 EDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGII  173 (337)
T ss_dssp             GGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEE
T ss_pred             HHHhCCCCcEEECCChHHHHHHHHHHHHHHhcCcc
Confidence            1111112347777776655544 445566666653

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.85  E-value=0.0036  Score=55.58  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC--------CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG--------LDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT   76 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G--------~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~   76 (297)
                      -||||||+|.||...+..+....        .+| .++|+++++++++.++          .|.            -.+.
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------~g~------------~~~~   64 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------LGW------------STTE   64 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------HTC------------SEEE
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------cCC------------Cccc
Confidence            38999999999998887766532        244 4889999887765221          121            1466


Q ss_pred             cCccc-c--cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           77 SNLKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        77 ~~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      +|+++ +  .+.|+|+.|+|...+.. .+...++.   +..+++--.-+.+.
T Consensus        65 ~d~~~ll~~~~iDaV~I~tP~~~H~~-~~~~al~a---GkhVl~EKPla~t~  112 (390)
T 4h3v_A           65 TDWRTLLERDDVQLVDVCTPGDSHAE-IAIAALEA---GKHVLCEKPLANTV  112 (390)
T ss_dssp             SCHHHHTTCTTCSEEEECSCGGGHHH-HHHHHHHT---TCEEEEESSSCSSH
T ss_pred             CCHHHHhcCCCCCEEEEeCChHHHHH-HHHHHHHc---CCCceeecCcccch
Confidence            77777 4  35899999999888642 22222332   33466544444444

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.81  E-value=0.019  Score=49.10  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~   82 (297)
                      -++|..||||..|.... .+++ .|.+|+.+|++++.++.+++.+++.       |.          .++++. .|..++
T Consensus       123 g~rVLDIGcG~G~~ta~-~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l  184 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGI-LLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVI  184 (298)
T ss_dssp             TCEEEEECCCSSCHHHH-HHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGG
T ss_pred             cCEEEEECCCccHHHHH-HHHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhC
Confidence            46999999998664322 2344 5889999999999998886654321       21          223332 222222


Q ss_pred             --cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           83 --HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                        ...|+|+.+..  ..-+..+++++.+.++++..++..
T Consensus       185 ~d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          185 DGLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             GGCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence              46899997653  222668899999988887765533

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.81  E-value=0.0017  Score=56.93  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~   42 (297)
                      .||+|+|+|.+|..++..|.++ +++|. +.|++++...
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            5899999999999999998874 55654 5677755443

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.76  E-value=0.00085  Score=59.35  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .||.|+|+|.+|..+|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            689999999999999999999998 89999998

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.75  E-value=0.0061  Score=53.56  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||.. .+..+... +++|+ ++|++  +.++..+.       +-..             .+...+++++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~-------~~~~-------------~~~~~~~~~~l   60 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAP-------FKEK-------------GVNFTADLNEL   60 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHH-------HHTT-------------TCEEESCTHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHh-------hCCC-------------CCeEECCHHHH
Confidence            58999999999984 55555544 67765 88888  22222100       0001             1356778877 


Q ss_pred             cc--CCcEEEEecccCHHH
Q 022407           82 LH--SADIIVEAIVESEDV   98 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~   98 (297)
                      ++  +.|+|++|+|...+.
T Consensus        61 l~~~~~D~V~i~tp~~~h~   79 (349)
T 3i23_A           61 LTDPEIELITICTPAHTHY   79 (349)
T ss_dssp             HSCTTCCEEEECSCGGGHH
T ss_pred             hcCCCCCEEEEeCCcHHHH
Confidence            44  489999999987763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.75  E-value=0.022  Score=49.22  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+|+.+..+.+
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            68999998 9999999999999999999999998765544

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.72  E-value=0.0024  Score=54.55  Aligned_cols=70  Identities=24%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.|. +|.++|..|...|..|+++++..                                      .++++ ++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------------------------~~L~~~~~  207 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------------------------------AHLDEEVN  207 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------------------------SSHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------------------------------ccHHHHhc
Confidence            6899999995 79999999999999999997442                                      23333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .||+||.+++...-++.       ++++++++++.-.
T Consensus       208 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVg  237 (301)
T 1a4i_A          208 KGDILVVATGQPEMVKG-------EWIKPGAIVIDCG  237 (301)
T ss_dssp             TCSEEEECCCCTTCBCG-------GGSCTTCEEEECC
T ss_pred             cCCEEEECCCCcccCCH-------HHcCCCcEEEEcc
Confidence            89999999975432222       2356777776443

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.70  E-value=0.0022  Score=54.93  Aligned_cols=92  Identities=16%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +..||+|+|+ |.||..++..+.+.|++ .++..++.+.                 |.       . ...+.+..++++ 
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~-----------------g~-------~-~~G~~vy~sl~el   59 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKG-----------------GT-------T-HLGLPVFNTVREA   59 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcc-----------------cc-------e-eCCeeccCCHHHH
Confidence            3468999999 99999999999888998 4455555311                 00       0 112456777777 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..  ++|+++.++|....  .+++.+..+. .-..++. -|.+++.
T Consensus        60 ~~~~~~D~viI~tP~~~~--~~~~~ea~~~-Gi~~iVi-~t~G~~~  101 (288)
T 2nu8_A           60 VAATGATASVIYVPAPFC--KDSILEAIDA-GIKLIIT-ITEGIPT  101 (288)
T ss_dssp             HHHHCCCEEEECCCGGGH--HHHHHHHHHT-TCSEEEE-CCCCCCH
T ss_pred             hhcCCCCEEEEecCHHHH--HHHHHHHHHC-CCCEEEE-ECCCCCH
Confidence            44  79999999997653  3344443332 1233333 3445555

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.70  E-value=0.0014  Score=58.02  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |++....|.|||+|..|...|..|+++|++|+++|++
T Consensus         1 Mm~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            1 MLPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5444457999999999999999999999999999986

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.67  E-value=0.0056  Score=51.03  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +||+++|+|.||+.++..  . ++++. +|+   ++   .              +.+          .+..++|+++ ++
T Consensus        13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k---~--------------gel----------gv~a~~d~d~lla   59 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI---S--------------KDI----------PGVVRLDEFQVPS   59 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS---C--------------CCC----------SSSEECSSCCCCT
T ss_pred             ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc---c--------------ccc----------CceeeCCHHHHhh
Confidence            799999999999999988  4 88864 676   21   1              110          2346777777 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++|+|++|.+..     .+-..+.+.+..+.=++
T Consensus        60 ~pD~VVe~A~~~-----av~e~~~~iL~aG~dvv   88 (253)
T 1j5p_A           60 DVSTVVECASPE-----AVKEYSLQILKNPVNYI   88 (253)
T ss_dssp             TCCEEEECSCHH-----HHHHHHHHHTTSSSEEE
T ss_pred             CCCEEEECCCHH-----HHHHHHHHHHHCCCCEE
Confidence            999999998522     22223556666655333

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.67  E-value=0.0035  Score=53.86  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+|++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            68999996 999999999999999999999998443

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.65  E-value=0.00095  Score=58.20  Aligned_cols=100  Identities=19%  Similarity=0.270  Sum_probs=53.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD---------GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      .||+|||+|.||+.++..+.+.         +.+|. ++|++++..+..  ...+.+......+.              +
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~i--d~~~~~~~~~~~~~--------------~   66 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDF--SLVEALRMKRETGM--------------L   66 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSC--CHHHHHHHHHHHSS--------------C
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhcccc--CHHHHHhhhccCcc--------------c
Confidence            5899999999999999998765         55555 668775432210  00000110011111              2


Q ss_pred             e--cCccc-c--cCCcEEEEecccCHHHHHHHHHHHHhhccCC-eEEeecCCC
Q 022407           76 T--SNLKD-L--HSADIIVEAIVESEDVKKKLFSELDKITKAS-AILASNTSS  122 (297)
Q Consensus        76 ~--~~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~  122 (297)
                      +  .|+++ +  .+.|+|++|.|...+-.. .+..+...+..+ .+++.|...
T Consensus        67 ~~~~d~~~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkp  118 (327)
T 3do5_A           67 RDDAKAIEVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGP  118 (327)
T ss_dssp             SBCCCHHHHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHH
T ss_pred             cCCCCHHHHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchh
Confidence            2  25555 3  468999999998764211 222233334444 455555543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.63  E-value=0.0018  Score=57.90  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.....+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            554456899999999999999999999999999998754

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.63  E-value=0.0073  Score=53.06  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=32.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|+|+|+|.+|...|..+...|.+|.++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            68999999999999999999999999999999764

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.61  E-value=0.0018  Score=47.91  Aligned_cols=82  Identities=10%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             CCcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            4 KMKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         4 ~~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..++|+|||+    +..|..+..+|.+.||+|+.++...+.+                             .-..+..++
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl   53 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINER   53 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSC
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCCh
Confidence            3478999998    5689999999999999999988754321                             113566778


Q ss_pred             ccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      +++.+.|+++.++|.+.  ...+++++.+.-. ..++.
T Consensus        54 ~dlp~vDlavi~~p~~~--v~~~v~e~~~~g~-k~v~~   88 (122)
T 3ff4_A           54 PVIEGVDTVTLYINPQN--QLSEYNYILSLKP-KRVIF   88 (122)
T ss_dssp             CCCTTCCEEEECSCHHH--HGGGHHHHHHHCC-SEEEE
T ss_pred             HHCCCCCEEEEEeCHHH--HHHHHHHHHhcCC-CEEEE
Confidence            88655999999997533  4455666554422 34554

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.58  E-value=0.003  Score=59.70  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus        18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            589999999999999999999998 899999764

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.57  E-value=0.0067  Score=53.13  Aligned_cols=82  Identities=15%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC--Chhhhcc-c-CCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQL--SQAMGTD-A-PRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~-~-~~~i~~~~~~   79 (297)
                      .||+|+|+|.||..++..+.++ +.+|. +.|++++.......          ..|..  ....... . ...+...++.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~----------~~g~~~~~~~~~~~~~~~~~v~v~~~~   71 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH----------RRGIRIYVPQQSIKKFEESGIPVAGTV   71 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH----------HTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH----------hcCcceecCcCHHHHhcccccccccCH
Confidence            4899999999999999998875 44654 66877655443311          11210  0000000 0 0112233344


Q ss_pred             cc-ccCCcEEEEecccCHH
Q 022407           80 KD-LHSADIIVEAIVESED   97 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~   97 (297)
                      ++ ..++|+||+|.|....
T Consensus        72 e~l~~~vDvV~~aTp~~~s   90 (340)
T 1b7g_O           72 EDLIKTSDIVVDTTPNGVG   90 (340)
T ss_dssp             HHHHHHCSEEEECCSTTHH
T ss_pred             hHhhcCCCEEEECCCCchh
Confidence            44 4579999999987653

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.57  E-value=0.0082  Score=52.44  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDP---DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-   77 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~-~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-   77 (297)
                      .++||+|+|+ |.+|..+...|.. ..+++..+..+.   ..=+..    ......+  .|.          ..+.+.+ 
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~   66 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPM   66 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEecc
Confidence            3579999996 9999999999988 456777664433   110001    0000000  010          0123332 


Q ss_pred             -Ccccc-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           78 -NLKDL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        78 -~~~~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                       +.+++ +++|+||+|+|....  .++..+   +...++.++.+++..
T Consensus        67 ~~~~~~~~~~Dvvf~a~p~~~s--~~~~~~---~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           67 SDISEFSPGVDVVFLATAHEVS--HDLAPQ---FLEAGCVVFDLSGAF  109 (337)
T ss_dssp             SSGGGTCTTCSEEEECSCHHHH--HHHHHH---HHHTTCEEEECSSTT
T ss_pred             CCHHHHhcCCCEEEECCChHHH--HHHHHH---HHHCCCEEEEcCCcc
Confidence             44555 899999999986442  233333   334567777777765

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.55  E-value=0.0022  Score=54.36  Aligned_cols=69  Identities=19%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.|. +|.++|..|+..|..|++.++...                                      ++++ ++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~--------------------------------------~L~~~~~  202 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK--------------------------------------DLSLYTR  202 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------CHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch--------------------------------------hHHHHhh
Confidence            6899999876 699999999999999999986432                                      2333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.+++...-++.       ++++++++++..
T Consensus       203 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDV  231 (285)
T 3p2o_A          203 QADLIIVAAGCVNLLRS-------DMVKEGVIVVDV  231 (285)
T ss_dssp             TCSEEEECSSCTTCBCG-------GGSCTTEEEEEC
T ss_pred             cCCEEEECCCCCCcCCH-------HHcCCCeEEEEe
Confidence            89999999974322222       345777777643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.53  E-value=0.0045  Score=55.63  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=36.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~   47 (297)
                      +||+|+|+|.+|+.++..|++.|.   +|+++|++.++++++.+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~   46 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS   46 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH
Confidence            589999999999999999999983   899999999987766443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.51  E-value=0.0013  Score=56.82  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             cEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE-E--e--cCc
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR-C--T--SNL   79 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~--~--~~~   79 (297)
                      +++.|||+|.| |..+|..|+..|..|+++||+..++..              ....    ........+ +  +  .++
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~----la~~~~~~t~~~~t~~~~L  239 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGES----LKLNKHHVEDLGEYSEDLL  239 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCC----SSCCCCEEEEEEECCHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHH----HhhhcccccccccccHhHH
Confidence            68999999976 999999999999999999998442211              0000    000000011 0  2  445


Q ss_pred             cc-ccCCcEEEEecccCHH-HHHHHHHHHHhhccCCeEEeecCCC
Q 022407           80 KD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ++ ++.||+||.+++...- ++.       ++++++++++.-.+.
T Consensus       240 ~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~  277 (320)
T 1edz_A          240 KKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACT  277 (320)
T ss_dssp             HHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSS
T ss_pred             HHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCC
Confidence            55 8899999999975322 222       234677777655443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.47  E-value=0.0026  Score=53.90  Aligned_cols=69  Identities=22%  Similarity=0.256  Sum_probs=50.3

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.|. +|.++|..|...|..|++.++...                                      ++++ ++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~~  203 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT--------------------------------------DLKSHTT  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------SHHHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch--------------------------------------hHHHhcc
Confidence            6899999876 799999999999999999975422                                      2333 67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .||+||.+++...-++.       ++++++++++..
T Consensus       204 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDv  232 (285)
T 3l07_A          204 KADILIVAVGKPNFITA-------DMVKEGAVVIDV  232 (285)
T ss_dssp             TCSEEEECCCCTTCBCG-------GGSCTTCEEEEC
T ss_pred             cCCEEEECCCCCCCCCH-------HHcCCCcEEEEe
Confidence            89999999974322222       345777776643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.45  E-value=0.0024  Score=54.13  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +++.|||.|. +|.++|..|+..|..|++.++.
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            6899999865 8999999999999999999753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.45  E-value=0.0019  Score=55.16  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=31.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            58999998 99999999999999999999998764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=96.44  E-value=0.0019  Score=58.44  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|...|..|+++|++|+++|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            589999999999999999999999999999865

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.44  E-value=0.0016  Score=55.29  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      +++.|||.|. +|.++|..|...|..|+++++...                                      ++.+ ++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~~  201 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK--------------------------------------NLRHHVE  201 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS--------------------------------------CHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCch--------------------------------------hHHHHhc
Confidence            6899999996 699999999999999999975432                                      3333 56


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      .||+||.+++...-++.       ++++++++++.
T Consensus       202 ~ADIVI~Avg~p~lI~~-------~~vk~GavVID  229 (288)
T 1b0a_A          202 NADLLIVAVGKPGFIPG-------DWIKEGAIVID  229 (288)
T ss_dssp             HCSEEEECSCCTTCBCT-------TTSCTTCEEEE
T ss_pred             cCCEEEECCCCcCcCCH-------HHcCCCcEEEE
Confidence            79999999974432222       23467776663

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.41  E-value=0.001  Score=54.21  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=49.1

Q ss_pred             CcEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..+|+|||+|.+|..++..  +.. |+++. ++|.++++....            ..|           -.+...+++++
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~------------i~g-----------v~V~~~~dl~e  135 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRP------------VRG-----------GVIEHVDLLPQ  135 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCE------------ETT-----------EEEEEGGGHHH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhh------------hcC-----------CeeecHHhHHH
Confidence            3689999999999999985  223 77654 789988743211            000           01223455555


Q ss_pred             -cc-CCcEEEEecccCHHHHHHHHHHHHh
Q 022407           82 -LH-SADIIVEAIVESEDVKKKLFSELDK  108 (297)
Q Consensus        82 -~~-~aD~Vi~~v~e~~~~k~~~~~~l~~  108 (297)
                       ++ +.|.|+.|+|...  .+++...+.+
T Consensus       136 ll~~~ID~ViIA~Ps~~--~~ei~~~l~~  162 (211)
T 2dt5_A          136 RVPGRIEIALLTVPREA--AQKAADLLVA  162 (211)
T ss_dssp             HSTTTCCEEEECSCHHH--HHHHHHHHHH
T ss_pred             HHHcCCCEEEEeCCchh--HHHHHHHHHH
Confidence             43 6899999998654  3355554443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.40  E-value=0.0024  Score=57.30  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |......|.|||+|..|...|..|++.|++|+++|+++
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            54433589999999999999999999999999999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.40  E-value=0.021  Score=51.09  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|. +|+..|+++++++.+
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  254 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA  254 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            689999999999988887778999 899999999887765

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.37  E-value=0.0062  Score=49.96  Aligned_cols=44  Identities=25%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |..+.++|.|.|+ |.+|..++..|++.|++|++.++++++++..
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL   45 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            6554467888876 8999999999999999999999998776554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.37  E-value=0.0032  Score=53.29  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=32.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC--CCcEEEEeCCHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD--GLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~   42 (297)
                      ++|.|.|+ |.+|+.++..|++.  |++|++.+|++++.+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46899998 99999999999998  999999999876544

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.37  E-value=0.0025  Score=56.80  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=32.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            35899999999999999999999999999998653

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.37  E-value=0.0031  Score=58.77  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~~   38 (297)
                      |++.+.+|.|||+|..|...|..|++   .|++|+++|+..
T Consensus         1 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            1 MNKPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             -CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            64556789999999999999999999   999999999853

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.36  E-value=0.029  Score=51.19  Aligned_cols=40  Identities=18%  Similarity=0.309  Sum_probs=35.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ..++|.|+|+|.+|..+|..|. .+++|.+++.++++.+.+
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~l  273 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKL  273 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHH
T ss_pred             cccEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHH
Confidence            4679999999999999999875 569999999999988776

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.36  E-value=0.02  Score=50.01  Aligned_cols=39  Identities=23%  Similarity=0.366  Sum_probs=28.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeC--CHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDT--DPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~--~~~~~~~~   44 (297)
                      .||+|+|+|.+|+.+++.+..+ +.+|. +.|+  +.+.+..+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l   46 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYM   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            5899999999999999987764 57766 5564  55554433

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.36  E-value=0.0078  Score=52.48  Aligned_cols=62  Identities=10%  Similarity=0.108  Sum_probs=45.7

Q ss_pred             cEEEEECCChhHH-HHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||. ..+..+.+. +++|+ ++|+++++                 .             .+...+|+++ 
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-----------------~-------------g~~~~~~~~~l   75 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-----------------E-------------GVNSYTTIEAM   75 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-----------------T-------------TSEEESSHHHH
T ss_pred             ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-----------------c-------------CCCccCCHHHH
Confidence            5899999999998 678877765 67754 78888541                 0             1345677776 


Q ss_pred             c---cCCcEEEEecccCHH
Q 022407           82 L---HSADIIVEAIVESED   97 (297)
Q Consensus        82 ~---~~aD~Vi~~v~e~~~   97 (297)
                      +   .+.|+|++|+|...+
T Consensus        76 l~~~~~vD~V~i~tp~~~H   94 (330)
T 4ew6_A           76 LDAEPSIDAVSLCMPPQYR   94 (330)
T ss_dssp             HHHCTTCCEEEECSCHHHH
T ss_pred             HhCCCCCCEEEEeCCcHHH
Confidence            4   358999999996654

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.35  E-value=0.0058  Score=57.23  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus       327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            589999999999999999999998 799999865

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.35  E-value=0.0023  Score=58.84  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |++|.|||+|.-|..-|..|+++|++|++++.+.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            3689999999999999999999999999999875

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.34  E-value=0.0014  Score=53.23  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=49.8

Q ss_pred             CcEEEEECCChhHHHHHHH--HHHCCCcEE-EEeCCHH-HHHH-HHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            5 MKVMGVVGSGQMGSGIAQL--GVMDGLDVW-LVDTDPD-ALVR-ATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..+|+|+|+|.+|..++..  +...|+++. ++|.+++ +... .           . .|           -.+...+++
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~-----------i-~G-----------vpV~~~~dL  140 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTT-----------E-DG-----------IPVYGISTI  140 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBC-----------T-TC-----------CBEEEGGGH
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCcee-----------E-CC-----------eEEeCHHHH
Confidence            4689999999999999987  345677755 7899876 4311 0           0 01           012223444


Q ss_pred             cc-cc--CCcEEEEecccCHHHHHHHHHHHHh
Q 022407           80 KD-LH--SADIIVEAIVESEDVKKKLFSELDK  108 (297)
Q Consensus        80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~  108 (297)
                      ++ ++  +.|.+|.|+|...  .+++...+.+
T Consensus       141 ~~~v~~~~Id~vIIAvPs~~--aq~v~d~lv~  170 (212)
T 3keo_A          141 NDHLIDSDIETAILTVPSTE--AQEVADILVK  170 (212)
T ss_dssp             HHHC-CCSCCEEEECSCGGG--HHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEecCchh--HHHHHHHHHH
Confidence            44 43  5899999998765  3455555444

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=96.33  E-value=0.0026  Score=56.18  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|..|...|..|+++|++|+++|+.++
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.32  E-value=0.0032  Score=54.52  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+....+|.|||+|.-|...|..|++.|++|+++|+++
T Consensus         1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   38 (335)
T 2zbw_A            1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLP   38 (335)
T ss_dssp             --CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            54445689999999999999999999999999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.31  E-value=0.0026  Score=55.65  Aligned_cols=35  Identities=20%  Similarity=0.088  Sum_probs=31.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|.|+ |.+|+.++..|++.|++|++++|+..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            479999996 99999999999999999999999654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.30  E-value=0.011  Score=51.85  Aligned_cols=67  Identities=24%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++.+.+           .+.|.-          .+ + .+.+. .++
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-----------~~lGa~----------~v-~-~~~~~~~~~  234 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA-----------LSMGVK----------HF-Y-TDPKQCKEE  234 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-----------HHTTCS----------EE-E-SSGGGCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HhcCCC----------ee-c-CCHHHHhcC
Confidence            689999999999988888888999999999999887765           344431          11 2 33333 237


Q ss_pred             CcEEEEecccC
Q 022407           85 ADIIVEAIVES   95 (297)
Q Consensus        85 aD~Vi~~v~e~   95 (297)
                      .|+||+++...
T Consensus       235 ~D~vid~~g~~  245 (348)
T 3two_A          235 LDFIISTIPTH  245 (348)
T ss_dssp             EEEEEECCCSC
T ss_pred             CCEEEECCCcH
Confidence            99999999765

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.30  E-value=0.0035  Score=58.89  Aligned_cols=37  Identities=16%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|.++++.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~  385 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVC  385 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHh
Confidence            6899999999999999999999999999999987643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.29  E-value=0.0069  Score=53.26  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |....++|.|.|+ |.+|+.++..|++.|++|++.+|+++..
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   42 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   42 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh
Confidence            5333468999997 9999999999999999999999987654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.29  E-value=0.028  Score=47.58  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ||++| |+ +-+|.++|..|++.|.+|.+.|++++.+++.
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~   69 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAA   69 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            56666 65 7799999999999999999999999887765

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=96.28  E-value=0.019  Score=49.94  Aligned_cols=149  Identities=17%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCChhh-h--cc---cCCceEEec-
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLV-DT-DPDALVRATKSISSSIQKFVSKGQLSQAM-G--TD---APRRLRCTS-   77 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--~~---~~~~i~~~~-   77 (297)
                      ||+|+|+|.+|+.+.+.|.++.++|..+ |. +.+.+..+       +..-...|.+...- .  ..   .-..+.+.. 
T Consensus         2 kVgInG~G~IGr~vlr~l~~~~~evvaind~~~~~~~a~l-------l~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~   74 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHL-------LKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAV   74 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHH-------HHCCTTTCSCSSCEEECSSEEEETTEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHh-------hhccccCCCCCceEEEcCCEEEECCEEEEEEec
Confidence            7999999999999999887777887744 53 44443333       11001234322110 0  00   012344432 


Q ss_pred             -Ccccc--c--CCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC
Q 022407           78 -NLKDL--H--SADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM  150 (297)
Q Consensus        78 -~~~~~--~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~  150 (297)
                       +++++  +  ++|+||+|.+.....  +.   ...+++.++  +|+++++.-         ..|  .+ ..-+|+-.+.
T Consensus        75 ~dp~~l~w~~~gvDiV~estG~~~s~--e~---a~~~l~aGakkvVIsaps~d---------~~p--~v-V~gVN~~~~~  137 (331)
T 2g82_O           75 KDPKEIPWAEAGVGVVIESTGVFTDA--DK---AKAHLEGGAKKVIITAPAKG---------EDI--TI-VMGVNHEAYD  137 (331)
T ss_dssp             SSGGGSCTTTTTEEEEEECSSSCCBH--HH---HTHHHHTTCSEEEESSCCBS---------CSE--EC-CTTTTGGGCC
T ss_pred             CChhhCcccccCCCEEEECCCchhhH--HH---HHHHHHCCCCEEEECCCCcC---------CCC--EE-eeccCHHHhC
Confidence             45444  3  789999999865532  11   223344455  888777641         001  00 1112222122


Q ss_pred             c-ceeEecCCCChHHHHH-HHHHHHHHhCCe
Q 022407          151 K-LVEVIRGADTSDETFR-ATKALAERFGKT  179 (297)
Q Consensus       151 ~-~vev~~~~~~~~~~~~-~~~~l~~~lG~~  179 (297)
                      + .-.++..++++..... .+..+.+..|-.
T Consensus       138 ~~~~~IIsnasCtTn~lap~lk~L~~~fgI~  168 (331)
T 2g82_O          138 PSRHHIISNASCTTNSLAPVMKVLEEAFGVE  168 (331)
T ss_dssp             TTTCCEEECCCHHHHHHHHHHHHHHHHTCEE
T ss_pred             cCCCCEEECCChHHHHHHHHHHHHHHhcCcc
Confidence            1 1347777776655444 445556667754

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.27  E-value=0.0034  Score=53.27  Aligned_cols=36  Identities=11%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~   41 (297)
                      |+|.|.|+ |.+|+.++..|++. |++|++.+|++++.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~   38 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV   38 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH
Confidence            47999997 99999999999988 99999999998754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.25  E-value=0.0039  Score=53.44  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999996 9999999999999999999999983

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.22  E-value=0.028  Score=49.32  Aligned_cols=151  Identities=15%  Similarity=0.232  Sum_probs=76.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC---CHHHHHHHHHHHHHHHHHHHHcCCCChhh-h-ccc----CCceE
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT---DPDALVRATKSISSSIQKFVSKGQLSQAM-G-TDA----PRRLR   74 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~----~~~i~   74 (297)
                      +.||+|+|+|.+|+.+.+.|..+ .++|..+.-   +.+.+..+       +..-...|.+...- . ...    -..+.
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~l-------l~~ds~hg~~~~~v~~~~~~l~v~g~~i~   89 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYL-------LKYDSVHGNFNGTVEVSGKDLCINGKVVK   89 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHH-------HHCCTTTCSCSSCEEECC-CEEETTEEEE
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhh-------hcccccCCCCCCcEEEeCCEEEECCeEEE
Confidence            35899999999999999998876 567665542   22222221       00001123332110 0 000    01232


Q ss_pred             Ee--cCcccc----cCCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCCccHHHHhhhcCCCCeEEEeecCCC
Q 022407           75 CT--SNLKDL----HSADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSSISITRLASATSRPCQVIGMHFMNP  146 (297)
Q Consensus        75 ~~--~~~~~~----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p  146 (297)
                      +.  .+++++    .++|+||+|.+.....     +....+++.++  +|+++++.-       .  .|.-+.|   +|+
T Consensus        90 v~~~~dp~~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~padd-------~--~p~~V~G---VN~  152 (354)
T 3cps_A           90 VFQAKDPAEIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPPKD-------N--VPMYVMG---VNN  152 (354)
T ss_dssp             EECCSCGGGCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCCSS-------C--CCBCCTT---TTG
T ss_pred             EEecCChHHCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCCCC-------C--CCEEEec---cCH
Confidence            32  245544    5799999999865532     22345566666  888776531       0  0111111   121


Q ss_pred             CCCCcc-eeEecCCCChHHHHH-HHHHHHHHhCCe
Q 022407          147 PPLMKL-VEVIRGADTSDETFR-ATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~~~-vev~~~~~~~~~~~~-~~~~l~~~lG~~  179 (297)
                      -.+.+. ..++..+++...... .+.++.+..|-.
T Consensus       153 ~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI~  187 (354)
T 3cps_A          153 TEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIV  187 (354)
T ss_dssp             GGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCee
Confidence            111111 347777776655544 455566666643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.22  E-value=0.0042  Score=55.43  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999875

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=96.20  E-value=0.0047  Score=57.81  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~~   38 (297)
                      |.+.+.+|.|||+|..|...|..|++   .|++|+++|+.+
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            54456789999999999999999999   999999999853

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.17  E-value=0.0049  Score=53.86  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            579999999999999999999999999999874

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.17  E-value=0.0063  Score=48.55  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|+|+ |.+|+.++..|++.|++|++++|++++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            68999998 999999999999999999999999764

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=96.17  E-value=0.0051  Score=53.73  Aligned_cols=73  Identities=19%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.+|...+..+ ..+.+|+ ++|+++ ++.+++.+..       .+.|.           .....+|+++ +
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~-------~~~~~-----------~~~~~~~~~~ll   63 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAI-------SEMNI-----------KPKKYNNWWEML   63 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHH-------HTTTC-----------CCEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHH-------HHcCC-----------CCcccCCHHHHh
Confidence            5899999999988777666 6677766 789887 3444332111       11121           0246678877 4


Q ss_pred             c--CCcEEEEecccCHH
Q 022407           83 H--SADIIVEAIVESED   97 (297)
Q Consensus        83 ~--~aD~Vi~~v~e~~~   97 (297)
                      +  +.|+|+.|+|...+
T Consensus        64 ~~~~vD~V~I~tp~~~H   80 (337)
T 3ip3_A           64 EKEKPDILVINTVFSLN   80 (337)
T ss_dssp             HHHCCSEEEECSSHHHH
T ss_pred             cCCCCCEEEEeCCcchH
Confidence            3  58999999997665

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.17  E-value=0.0044  Score=55.41  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            5799999999999999999999999999998764

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.17  E-value=0.0035  Score=58.61  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+
T Consensus       328 ~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            589999999999999999999998 79999876

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.16  E-value=0.015  Score=49.62  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +..||+|+|+ |.||..++..+.+.|++ .++..++...                 |.        ....+.+..++++ 
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~-----------------g~--------~i~G~~vy~sl~el   59 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKG-----------------GM--------EVLGVPVYDTVKEA   59 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC--------EETTEEEESSHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCC-----------------Cc--------eECCEEeeCCHHHH
Confidence            3478999999 99999999999988998 4455555320                 00        0122456777776 


Q ss_pred             cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           82 LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 ~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..  .+|++|.++|...  ..+++.+..+.- -..+++ -|.+++.
T Consensus        60 ~~~~~~Dv~Ii~vp~~~--~~~~~~ea~~~G-i~~vVi-~t~G~~~  101 (288)
T 1oi7_A           60 VAHHEVDASIIFVPAPA--AADAALEAAHAG-IPLIVL-ITEGIPT  101 (288)
T ss_dssp             HHHSCCSEEEECCCHHH--HHHHHHHHHHTT-CSEEEE-CCSCCCH
T ss_pred             hhcCCCCEEEEecCHHH--HHHHHHHHHHCC-CCEEEE-ECCCCCH
Confidence            44  7999999998543  334444433321 232333 3456654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.16  E-value=0.05  Score=45.31  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.|++.+.++..
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   48 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQA   48 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56777776 8999999999999999999999998876654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.15  E-value=0.0074  Score=54.59  Aligned_cols=32  Identities=22%  Similarity=0.478  Sum_probs=29.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      .+|.|||+|..|+.++..|+.+|. +++++|.+
T Consensus        41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D   73 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   73 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            589999999999999999999998 79999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.15  E-value=0.0022  Score=56.59  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~   41 (297)
                      +++|.|.|+ |.+|+.++..|++. |++|++++|+++..
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~   62 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL   62 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhh
Confidence            478999996 99999999999988 99999999987654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.15  E-value=0.0055  Score=48.05  Aligned_cols=33  Identities=30%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999875

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.14  E-value=0.016  Score=48.09  Aligned_cols=43  Identities=30%  Similarity=0.333  Sum_probs=36.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      -++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   52 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ   52 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            356778887 8999999999999999999999999887766443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.14  E-value=0.0065  Score=52.06  Aligned_cols=88  Identities=20%  Similarity=0.117  Sum_probs=52.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHH----CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM----DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~----~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      ..||+|||+|.||...+..+..    .+++++ ++|++..                .+.            ..+. .+|+
T Consensus         7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----------------a~~------------~g~~-~~~~   57 (294)
T 1lc0_A            7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----------------GSL------------DEVR-QISL   57 (294)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----------------CEE------------TTEE-BCCH
T ss_pred             cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----------------HHH------------cCCC-CCCH
Confidence            4699999999999999888764    356655 6776521                000            0122 3566


Q ss_pred             cc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           80 KD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ++ ++  +.|+|++|+|...+. ..+...++.   +..+++.-..+...
T Consensus        58 ~ell~~~~vD~V~i~tp~~~H~-~~~~~al~a---GkhVl~EKPla~~~  102 (294)
T 1lc0_A           58 EDALRSQEIDVAYICSESSSHE-DYIRQFLQA---GKHVLVEYPMTLSF  102 (294)
T ss_dssp             HHHHHCSSEEEEEECSCGGGHH-HHHHHHHHT---TCEEEEESCSCSCH
T ss_pred             HHHhcCCCCCEEEEeCCcHhHH-HHHHHHHHC---CCcEEEeCCCCCCH
Confidence            66 43  689999999987763 222222332   23356544444444

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=96.13  E-value=0.0024  Score=57.99  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCC------CcEEEEeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDG------LDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G------~~V~~~d~~   37 (297)
                      |..+.++|+|||+|..|.+.|..|+++|      ++|++++.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~   43 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS   43 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence            6555578999999999999999999999      999999986

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.09  E-value=0.008  Score=55.75  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=32.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .|+|.|.|+ |.+|+.++..|++.|++|++++|++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            579999995 999999999999999999999998653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.08  E-value=0.0091  Score=50.52  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|.+|..-+..|.+.|++|++++.+.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            689999999999999999999999999999764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.07  E-value=0.014  Score=49.78  Aligned_cols=42  Identities=29%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|+| +|-+|++++..|++.|.+|++++|++++.+.+.+.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~  162 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS  162 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence            6899999 89999999999999999999999998877665443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.07  E-value=0.094  Score=43.77  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++.++++...+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAK   53 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence            46777777 789999999999999999999999988776543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.06  E-value=0.0085  Score=49.29  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~   40 (297)
                      ++|.|.|+ |.+|+.++..|++.|+  +|++.+|+++.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~   56 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   56 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC
Confidence            58999995 9999999999999999  99999998754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.05  E-value=0.0054  Score=51.94  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ++|.|.|+|.+|+.++..|++.|++|++++|+++.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            68999999999999999999999999999998653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.05  E-value=0.0038  Score=54.47  Aligned_cols=32  Identities=28%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             cEEEEECCChhHHHHHHHHHH---CCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~   37 (297)
                      ++|.|||+|..|...|..|++   +|++|+++|++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~   36 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA   36 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECC
Confidence            579999999999999999999   99999999976

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.04  E-value=0.063  Score=44.61  Aligned_cols=40  Identities=30%  Similarity=0.371  Sum_probs=35.1

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|.|+ |-+|..+|..|++.|++|++.+++++.+++.
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   49 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERV   49 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            357888887 7899999999999999999999999877665

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.03  E-value=0.0047  Score=55.77  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=31.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34799999999999999999999999999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.02  E-value=0.033  Score=50.78  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-c--Ccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-S--NLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~~   82 (297)
                      ++|.|||+|..|..-+..|.++|.+|+++|.+...  .+        ..+.+.+.            +++. .  ..+++
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~--~~--------~~l~~~~~------------i~~~~~~~~~~~l   70 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP--QF--------TVWANEGM------------LTLVEGPFDETLL   70 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH--HH--------HHHHTTTS------------CEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCH--HH--------HHHHhcCC------------EEEEECCCCcccc
Confidence            68999999999999999999999999999985432  11        11122222            1221 1  23457


Q ss_pred             cCCcEEEEecccCHHHHHHHHHH
Q 022407           83 HSADIIVEAIVESEDVKKKLFSE  105 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~  105 (297)
                      .++|+||.+. ++..+...+...
T Consensus        71 ~~~~lVi~at-~~~~~n~~i~~~   92 (457)
T 1pjq_A           71 DSCWLAIAAT-DDDTVNQRVSDA   92 (457)
T ss_dssp             TTCSEEEECC-SCHHHHHHHHHH
T ss_pred             CCccEEEEcC-CCHHHHHHHHHH
Confidence            8999998864 455555555544

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.02  E-value=0.0053  Score=55.15  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999864

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.02  E-value=0.0071  Score=51.08  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             cEEEEECCChh-HHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQM-GSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~m-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      +++.|||.|.+ |.++|..|...  |..|++.+++..                                      ++.+ 
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~--------------------------------------~L~~~  200 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTR--------------------------------------DLPAL  200 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCS--------------------------------------CHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchh--------------------------------------HHHHH
Confidence            68999999975 99999999999  889999975432                                      3333 


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                      ++.||+||.+++...-++.       ++++++++++.
T Consensus       201 ~~~ADIVI~Avg~p~~I~~-------~~vk~GavVID  230 (281)
T 2c2x_A          201 TRQADIVVAAVGVAHLLTA-------DMVRPGAAVID  230 (281)
T ss_dssp             HTTCSEEEECSCCTTCBCG-------GGSCTTCEEEE
T ss_pred             HhhCCEEEECCCCCcccCH-------HHcCCCcEEEE
Confidence            6789999999974432322       23466776663

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.02  E-value=0.016  Score=47.87  Aligned_cols=46  Identities=22%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      |.-.-++|.|.|+ |-+|..+|..|++.|++|.+.+++++..+...+
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~   47 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN   47 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4333467777777 899999999999999999999999987766543

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.01  E-value=0.041  Score=47.85  Aligned_cols=148  Identities=15%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             EEEEECCChhHHHHHHHHHHC---CCcEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc-------cCCceE
Q 022407            7 VMGVVGSGQMGSGIAQLGVMD---GLDVWLV-DT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTD-------APRRLR   74 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~---G~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~i~   74 (297)
                      ||+|+|+|.+|+.+.+.|..+   .++|..+ |+ +.+.+..+.+       .--..|.+... ...       .-..+.
T Consensus         2 kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~-------~ds~~g~~~~~-v~~~~~~l~v~g~~i~   73 (332)
T 1hdg_O            2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLK-------YDSVHKKFPGK-VEYTENSLIVDGKEIK   73 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHH-------CCTTTCCCSSC-EEECSSEEEETTEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhcc-------CcCcCCCcCCc-EEEcCCEEEECCeEEE
Confidence            799999999999999988875   3676644 54 4443332210       00112333211 000       012344


Q ss_pred             Eec--Cccccc----CCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCCccHHHHhhhcCCCCeEEEeecCCC
Q 022407           75 CTS--NLKDLH----SADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSSISITRLASATSRPCQVIGMHFMNP  146 (297)
Q Consensus        75 ~~~--~~~~~~----~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p  146 (297)
                      +..  +++++.    ++|+||+|.|.....  +.   ...+++.++  +|+++++. .         .|.  ....-+|+
T Consensus        74 v~~~~dp~~l~w~~~~vDvV~~atg~~~s~--e~---a~~~l~aGakkvVId~~a~-d---------~p~--~~V~eVN~  136 (332)
T 1hdg_O           74 VFAEPDPSKLPWKDLGVDFVIESTGVFRNR--EK---AELHLQAGAKKVIITAPAK-G---------EDI--TVVIGCNE  136 (332)
T ss_dssp             EECCSSGGGSCHHHHTCCEEEECSSSCCBH--HH---HTHHHHTTCSEEEESSCCB-S---------CSE--ECCTTTTG
T ss_pred             EEecCChHHCcccccCCCEEEECCccchhH--HH---HHHHHHcCCcEEEEeCCCC-C---------CCc--eEEeccCH
Confidence            442  455552    899999999865542  12   223344455  77776653 0         111  11111222


Q ss_pred             CCCCcceeEecCCCChHHHHH-HHHHHHHHhCCe
Q 022407          147 PPLMKLVEVIRGADTSDETFR-ATKALAERFGKT  179 (297)
Q Consensus       147 ~~~~~~vev~~~~~~~~~~~~-~~~~l~~~lG~~  179 (297)
                      -.+.+-..++..+++...... .+.++.+..|-.
T Consensus       137 ~~i~~~~~iIsNpsCttn~lap~lkpL~~~~gI~  170 (332)
T 1hdg_O          137 DQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIV  170 (332)
T ss_dssp             GGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEE
T ss_pred             HHhCCCCcEEECCccHHHHHHHHHHHHHHhcCee
Confidence            111112347777776665544 455666677653

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.01  E-value=0.03  Score=49.10  Aligned_cols=100  Identities=21%  Similarity=0.245  Sum_probs=52.6

Q ss_pred             CCCCCcEEEEEC-CChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            1 MEEKMKVMGVVG-SGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         1 M~~~~~~V~iiG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      |+. ++||+|+| .|.+|+.+...|.++.. +++.+....+.-.+.    .+      ..+.+..      ...+.+. +
T Consensus         1 M~~-~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~----~~------~~~~~~g------~~~~~~~-~   62 (345)
T 2ozp_A            1 MTG-KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV----HF------VHPNLRG------RTNLKFV-P   62 (345)
T ss_dssp             ----CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG----GG------TCGGGTT------TCCCBCB-C
T ss_pred             CCC-CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh----HH------hCchhcC------ccccccc-c
Confidence            533 36999999 59999999999987654 766654432210000    00      0000000      0111221 1


Q ss_pred             cccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .+++.++|+||+|+|....  .++..   .+...++.++++++..
T Consensus        63 ~~~~~~vDvV~~a~g~~~s--~~~a~---~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           63 PEKLEPADILVLALPHGVF--AREFD---RYSALAPVLVDLSADF  102 (345)
T ss_dssp             GGGCCCCSEEEECCCTTHH--HHTHH---HHHTTCSEEEECSSTT
T ss_pred             hhHhcCCCEEEEcCCcHHH--HHHHH---HHHHCCCEEEEcCccc
Confidence            2235789999999997664  22322   2334455566666643

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=95.99  E-value=0.0059  Score=56.83  Aligned_cols=38  Identities=29%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |......|.|||+|..|...|..|++.|++|+++|+++
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            65544689999999999999999999999999999875

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.95  E-value=0.019  Score=50.45  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=24.6

Q ss_pred             CcEEEEEC-CChhHHHHHHHHHHCC-CcEEEEe
Q 022407            5 MKVMGVVG-SGQMGSGIAQLGVMDG-LDVWLVD   35 (297)
Q Consensus         5 ~~~V~iiG-~G~mG~~iA~~l~~~G-~~V~~~d   35 (297)
                      +.||+|+| .|.+|..+...|..+. ++|+.+.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            36899999 6999999999887653 4666553

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.95  E-value=0.0067  Score=53.49  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCC-CcEEEEe
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDG-LDVWLVD   35 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G-~~V~~~d   35 (297)
                      +||+|+| .|.+|..++..|.++. ++|+.+.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~   40 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALA   40 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            5899999 7999999999988764 5776664

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.95  E-value=0.032  Score=48.76  Aligned_cols=39  Identities=18%  Similarity=0.131  Sum_probs=34.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++++.+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  208 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA  208 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            579999999999999988888999 999999998887665

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=95.95  E-value=0.017  Score=48.56  Aligned_cols=42  Identities=24%  Similarity=0.344  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.++++++++...+.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   47 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE   47 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            46777777 8899999999999999999999999887766443

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.94  E-value=0.02  Score=47.61  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++..+..
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   53 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA   53 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888877 9999999999999999999999998776554

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.93  E-value=0.02  Score=47.40  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|++++++..
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA   51 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56888877 9999999999999999999999998876554

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.93  E-value=0.016  Score=48.61  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |+++| |+ +-+|.++|..|++.|.+|.++|++++++++..+.+
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i   51 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL   51 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            45555 65 78999999999999999999999999887765543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.92  E-value=0.12  Score=42.97  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             cEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ | -+|..+|..|++.|++|++.+++.+.++...+
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRD   65 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence            57888898 8 49999999999999999999999987766533

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.91  E-value=0.029  Score=48.99  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=26.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcEEE-EeC-CHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG---LDVWL-VDT-DPDAL   41 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G---~~V~~-~d~-~~~~~   41 (297)
                      .||+|+|+|.+|+.+...|..++   ++|.. .|+ +++.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~   43 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTA   43 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHH
Confidence            48999999999999999988863   56554 444 44433

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.90  E-value=0.011  Score=49.37  Aligned_cols=40  Identities=13%  Similarity=0.113  Sum_probs=32.6

Q ss_pred             cEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|-|++   -+|.++|..|++.|.+|.+.+|+++.++++.
T Consensus         7 K~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            7 KTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELE   49 (256)
T ss_dssp             CEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            445555864   5999999999999999999999988776653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=95.90  E-value=0.0072  Score=54.52  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|+++|+ +|+++|+++
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~   40 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP   40 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            479999999999999999999999 999999754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.89  E-value=0.062  Score=45.50  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++.+.++...
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45667776 88999999999999999999999998776653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=95.88  E-value=0.026  Score=47.11  Aligned_cols=41  Identities=32%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++...+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR   49 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            56778877 899999999999999999999999887665533

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.88  E-value=0.0084  Score=50.57  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             EEEEECC-ChhHHHHHHHHHHC--CCcEEEEeCCHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMD--GLDVWLVDTDPDALV   42 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~   42 (297)
                      +|.|.|+ |.+|+.++..|++.  |++|++.+|++++.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   39 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ   39 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh
Confidence            4789998 99999999999998  999999999876543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.88  E-value=0.0075  Score=54.01  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|+++|++ |+++|+++.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            5899999999999999999999999 999998643

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.87  E-value=0.049  Score=48.18  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=26.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcEEEE-eC-CHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DT-DPDAL   41 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G---~~V~~~-d~-~~~~~   41 (297)
                      .||+|+|+|.+|+.+...|..++   ++|..+ |+ +++.+
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~   43 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTA   43 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHH
Confidence            58999999999999999988763   565543 44 44433

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.86  E-value=0.029  Score=48.88  Aligned_cols=149  Identities=19%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc-------cCCceEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWLV-DT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTD-------APRRLRC   75 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~~i~~   75 (297)
                      .||+|+|+|.+|+.+.+.+..+ .++|..+ |. +.+.+..+       +..--..|.+... ...       .-..+.+
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~l-------l~~ds~~G~~~~~-v~~~~~~l~v~g~~i~v   73 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHL-------LKYDSVHGRLDAE-VSVNGNNLVVNGKEIIV   73 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHH-------HHEETTTEECSSC-EEEETTEEEETTEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHH-------hccCCcCCCcCce-EEEccCcEEECCEEEEE
Confidence            4899999999999999988776 4465533 43 33333222       1000112322110 000       0123444


Q ss_pred             ec--Ccccc--c--CCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCCccHHHHhhhcCCCCeEEEeecCCCC
Q 022407           76 TS--NLKDL--H--SADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSSISITRLASATSRPCQVIGMHFMNPP  147 (297)
Q Consensus        76 ~~--~~~~~--~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~  147 (297)
                      ..  +++++  +  ++|+||+|.|.....  +.   ...+++.++  +|+++++. .        ..|   ....-+|.-
T Consensus        74 ~~~~dp~~i~w~~~~vDvV~~atg~~~s~--e~---a~~~l~~Gak~vVId~pa~-d--------~~p---~~V~eVN~~  136 (334)
T 3cmc_O           74 KAERDPENLAWGEIGVDIVVESTGRFTKR--ED---AAKHLEAGAKKVIISAPAK-N--------EDI---TIVMGVNQD  136 (334)
T ss_dssp             ECCSSGGGCCTGGGTCCEEEECSSSCCBH--HH---HTHHHHTTCSEEEESSCCB-S--------CSE---ECCTTTSGG
T ss_pred             EecCChhhcCcccCccCEEEECCCchhhH--HH---HHHHHHCCCCEEEEeCCCc-c--------CCC---EeccccCHH
Confidence            32  44444  2  799999999865532  12   223344455  78777654 1        001   111111221


Q ss_pred             CCCc-ceeEecCCCChHHHHH-HHHHHHHHhCCe
Q 022407          148 PLMK-LVEVIRGADTSDETFR-ATKALAERFGKT  179 (297)
Q Consensus       148 ~~~~-~vev~~~~~~~~~~~~-~~~~l~~~lG~~  179 (297)
                      .+.+ ...++..+++...... .+.++.+..|-.
T Consensus       137 ~i~~~~~~IIsNpsCttn~lap~lkpL~~~~gI~  170 (334)
T 3cmc_O          137 KYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIV  170 (334)
T ss_dssp             GCCTTTCCEEECCCHHHHHHHHHHHHHHHHHCEE
T ss_pred             HhCccCCeEEECCChHHHHHHHHHHHHHHhcCce
Confidence            1111 1347777776655544 455666667643

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.85  E-value=0.024  Score=47.26  Aligned_cols=41  Identities=20%  Similarity=0.189  Sum_probs=35.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++...+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56778877 899999999999999999999999887766543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.84  E-value=0.022  Score=47.61  Aligned_cols=39  Identities=33%  Similarity=0.425  Sum_probs=34.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKA   47 (262)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56777776 8999999999999999999999998876654

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.84  E-value=0.023  Score=52.08  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+++|.|||.|..|.+ +|..|.+.|++|.++|....
T Consensus        17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~   53 (475)
T 1p3d_A           17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   53 (475)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            3678999999999997 99999999999999998764

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=95.84  E-value=0.012  Score=50.51  Aligned_cols=90  Identities=19%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      .+|+|+|+ |.||..++..+.+.|++ .+++.++.+.                 |.       . ...+.+..++++ ..
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~-----------------g~-------~-i~G~~vy~sl~el~~   67 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKG-----------------GQ-------N-VHGVPVFDTVKEAVK   67 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCC-----------------Cc-------e-ECCEeeeCCHHHHhh
Confidence            46888899 99999999999999999 6677776421                 00       0 112466777777 44


Q ss_pred             --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                        ++|++|.++|...  ..+++.+..+. .-..+++ -|.+++.
T Consensus        68 ~~~~Dv~ii~vp~~~--~~~~v~ea~~~-Gi~~vVi-~t~G~~~  107 (294)
T 2yv1_A           68 ETDANASVIFVPAPF--AKDAVFEAIDA-GIELIVV-ITEHIPV  107 (294)
T ss_dssp             HHCCCEEEECCCHHH--HHHHHHHHHHT-TCSEEEE-CCSCCCH
T ss_pred             cCCCCEEEEccCHHH--HHHHHHHHHHC-CCCEEEE-ECCCCCH
Confidence              7999999998543  33444443332 1232333 3556654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.83  E-value=0.046  Score=47.54  Aligned_cols=39  Identities=31%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+|+..++++++++.+
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  206 (340)
T 3s2e_A          168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLA  206 (340)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            689999999999988888888999999999999987765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.83  E-value=0.027  Score=47.00  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...
T Consensus        10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (260)
T 2ae2_A           10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCL   50 (260)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56778876 89999999999999999999999988766543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.81  E-value=0.0084  Score=52.98  Aligned_cols=33  Identities=30%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999753

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=95.81  E-value=0.017  Score=48.09  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=35.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+|++++++...+.
T Consensus         8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (252)
T 3h7a_A            8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE   50 (252)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56777777 7899999999999999999999999887766443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.81  E-value=0.007  Score=53.17  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|...|..|+++|++|+++|+..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999999753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.78  E-value=0.13  Score=44.98  Aligned_cols=39  Identities=23%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++++.+
T Consensus       170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  208 (352)
T 1e3j_A          170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA  208 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            689999999999988888878999999999999887765

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.77  E-value=0.022  Score=46.83  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+|++++++...
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   44 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE   44 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 88999999999999999999999998776653

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=95.76  E-value=0.053  Score=47.83  Aligned_cols=143  Identities=16%  Similarity=0.193  Sum_probs=72.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Ccc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLK   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~   80 (297)
                      .||+|||+ |..|.-+...|.+++|.   +.++.....                  .|..-.    .....+.+.+ +.+
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~s------------------aG~~~~----~~~~~~~~~~~~~~   60 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------------------AGKSLK----FKDQDITIEETTET   60 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTT------------------TTCEEE----ETTEEEEEEECCTT
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcccc------------------CCCcce----ecCCCceEeeCCHH
Confidence            58999995 99999999999998773   444432211                  111000    0001122221 233


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD  160 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~  160 (297)
                      +++++|+||+|+|....  .+....   +...++.++.+++..-..   ...  +   .++.-+|+..+..--.++.+++
T Consensus        61 ~~~~~Dvvf~a~~~~~s--~~~a~~---~~~~G~~vIDlSa~~R~~---~~~--p---~~vpevN~~~i~~~~~iIanpg  127 (366)
T 3pwk_A           61 AFEGVDIALFSAGSSTS--AKYAPY---AVKAGVVVVDNTSYFRQN---PDV--P---LVVPEVNAHALDAHNGIIACPN  127 (366)
T ss_dssp             TTTTCSEEEECSCHHHH--HHHHHH---HHHTTCEEEECSSTTTTC---TTS--C---BCCHHHHGGGGTTCCSEEECCC
T ss_pred             HhcCCCEEEECCChHhH--HHHHHH---HHHCCCEEEEcCCccccC---CCc--e---EEEccCCHHHHcCCCCeEECCC
Confidence            47899999999985442  233333   334566677677643211   000  0   0111111111111123556666


Q ss_pred             ChHHH-HHHHHHHHHHhCCeEEEe
Q 022407          161 TSDET-FRATKALAERFGKTVVCS  183 (297)
Q Consensus       161 ~~~~~-~~~~~~l~~~lG~~~v~~  183 (297)
                      +.... .-.+.++.+..+-..+.+
T Consensus       128 C~tt~~~l~l~pL~~~~~i~~i~v  151 (366)
T 3pwk_A          128 CSTIQMMVALEPVRQKWGLDRIIV  151 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEE
Confidence            55443 445567777777654443

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=95.75  E-value=0.0056  Score=53.24  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=26.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-------CCcEE-EEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-------GLDVW-LVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-------G~~V~-~~d~~~~   39 (297)
                      .||+|||+|.||+.++..+.+.       +.+|+ +.|++++
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~   46 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSY   46 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBE
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChh
Confidence            5899999999999999998763       34444 5677654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.75  E-value=0.029  Score=45.88  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=36.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+++.++++...+.+
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56778887 88999999999999999999999998877665443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.75  E-value=0.023  Score=47.22  Aligned_cols=43  Identities=23%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+|+++.++...+.+
T Consensus         8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46667777 89999999999999999999999998877765443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.74  E-value=0.16  Score=42.55  Aligned_cols=42  Identities=21%  Similarity=0.082  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   71 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA   71 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            34555566 8899999999999999999999999877765443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.74  E-value=0.0076  Score=54.05  Aligned_cols=33  Identities=24%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|..|.+.|..|+++|++|++++.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            479999999999999999999999999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=95.74  E-value=0.0091  Score=53.06  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ..|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999999854

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.73  E-value=0.025  Score=47.40  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45666676 899999999999999999999999988766543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.73  E-value=0.0094  Score=52.55  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..|.|||+|..|...|..|+++|++|+++|+.
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~   49 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESG   49 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            47999999999999999999999999999985

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.73  E-value=0.01  Score=51.50  Aligned_cols=42  Identities=26%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             CCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         3 ~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ...++|.|.|+ |.+|+.++..|++.|++|++.+++.+.....
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (341)
T 3enk_A            3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREA   45 (341)
T ss_dssp             CSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHH
T ss_pred             CCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHH
Confidence            34578999986 9999999999999999999999987654443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.72  E-value=0.0072  Score=53.71  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~-~G-~~V~~~d~~~   38 (297)
                      ..|.|||+|..|...|..|++ +| ++|+++|++.
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 99 9999999853

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.71  E-value=0.028  Score=46.74  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=36.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.++++++++...+.+
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46777777 88999999999999999999999998877664443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.71  E-value=0.032  Score=46.95  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=34.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   72 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA   72 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence            57888876 89999999999999999999999988766543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=95.70  E-value=0.009  Score=53.22  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|+|||+|..|...|..|+++|++|++++.+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            589999999999999999999999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=95.70  E-value=0.0075  Score=52.05  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .++|.|||+|.-|...|..|++.|++|+++|+.
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            468999999999999999999999999999984

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.70  E-value=0.027  Score=51.89  Aligned_cols=36  Identities=28%  Similarity=0.482  Sum_probs=32.4

Q ss_pred             CCcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+++|.|||.|..|.+ +|..|.+.|++|.++|....
T Consensus        18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   54 (491)
T 2f00_A           18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   54 (491)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence            3578999999999997 99999999999999998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.70  E-value=0.061  Score=46.79  Aligned_cols=39  Identities=28%  Similarity=0.343  Sum_probs=35.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+|+..++++++++.+
T Consensus       166 ~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  204 (339)
T 1rjw_A          166 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA  204 (339)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            689999999999999988888999999999999887765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.70  E-value=0.017  Score=48.37  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      -|+++| |+ +-+|.++|..|++.|.+|.+.|++++.+++..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l   53 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL   53 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367666 44 88999999999999999999999998877764443

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.70  E-value=0.13  Score=42.70  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         8 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQET   47 (264)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            57888877 8999999999999999999999998876654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=95.69  E-value=0.063  Score=44.69  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++++.++..
T Consensus         7 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   46 (257)
T 3imf_A            7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEA   46 (257)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45667776 8899999999999999999999999887665

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.69  E-value=0.032  Score=47.08  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|+++.++...
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   63 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL   63 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777776 89999999999999999999999988766543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.68  E-value=0.0037  Score=56.88  Aligned_cols=34  Identities=32%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~   40 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW   40 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4699999999999999999999999999998764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.68  E-value=0.025  Score=49.88  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|+| .|.+|..+...|.++.. ++..+....+.-.+.    .+      ..+.+...    ....+.+.+ .+..+
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~----~~------~~~~~~~~----v~~dl~~~~-~~~~~   81 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSM----ES------VFPHLRAQ----KLPTLVSVK-DADFS   81 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCH----HH------HCGGGTTS----CCCCCBCGG-GCCGG
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCH----HH------hCchhcCc----ccccceecc-hhHhc
Confidence            5899999 69999999999988753 776664332211000    00      01110000    001122222 22356


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ++|+||+|+|.....+     ....+ ..++.++++++..
T Consensus        82 ~vDvVf~atp~~~s~~-----~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           82 TVDAVFCCLPHGTTQE-----IIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             GCSEEEECCCTTTHHH-----HHHTS-CTTCEEEECSSTT
T ss_pred             CCCEEEEcCCchhHHH-----HHHHH-hCCCEEEECCccc
Confidence            8999999998766432     22344 5577777777754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.67  E-value=0.13  Score=44.92  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CcEEEEE-CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVV-GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~ii-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+ |+|.+|...++.+...|.+|++.++++++++.+
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT  191 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            3689999 689999998888888999999999999887765

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=95.67  E-value=0.026  Score=46.49  Aligned_cols=40  Identities=28%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.++++++.+...
T Consensus         8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVA   48 (248)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            56777776 99999999999999999999999988766553

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.67  E-value=0.028  Score=46.38  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+.
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   57 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQ   57 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHH
Confidence            46777777 8999999999999999999999999887766443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.66  E-value=0.021  Score=47.30  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus        12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   51 (255)
T 1fmc_A           12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHV   51 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            57888877 9999999999999999999999998876554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.66  E-value=0.027  Score=47.24  Aligned_cols=43  Identities=28%  Similarity=0.347  Sum_probs=35.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+.+
T Consensus        11 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   54 (267)
T 3t4x_A           11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEI   54 (267)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45666676 88999999999999999999999998877665443

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.66  E-value=0.065  Score=49.74  Aligned_cols=34  Identities=21%  Similarity=0.059  Sum_probs=30.2

Q ss_pred             CcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|.|||.|-.|.+ +|..|.+.|++|++.|.+.
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~   53 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANI   53 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCC
Confidence            478999999999986 7888899999999999864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=95.65  E-value=0.029  Score=46.51  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.++++++++...
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG   48 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56777776 89999999999999999999999988776553

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.65  E-value=0.0044  Score=54.57  Aligned_cols=33  Identities=15%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+.|.|||+|..|.+.|..|+ .|++|+++|.++
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            367999999999999999999 699999999873

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=95.64  E-value=0.035  Score=46.73  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=34.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++...
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   62 (273)
T 1ae1_A           22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECL   62 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777776 89999999999999999999999988766543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.63  E-value=0.007  Score=52.88  Aligned_cols=32  Identities=22%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC------CcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG------LDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G------~~V~~~d~~   37 (297)
                      |.|.|||+|..|.+.|..|+++|      ++|+++|..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~   38 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR   38 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC
Confidence            47999999999999999999998      999999986

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.63  E-value=0.029  Score=46.45  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-.-+++.|.|+ |-+|..+|..|++.|++|++.+|++++++..
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4323367888887 8999999999999999999999998776544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.63  E-value=0.029  Score=46.93  Aligned_cols=39  Identities=33%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|++++.+..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQC   47 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57888887 8999999999999999999999998776544

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=95.63  E-value=0.02  Score=46.82  Aligned_cols=39  Identities=18%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+|++++++..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   41 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTV   41 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45778887 8899999999999999999999999877665

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.62  E-value=0.074  Score=46.21  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEE-EeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc-------CCce
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWL-VDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDA-------PRRL   73 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~-~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~i   73 (297)
                      ...||+|.|.|.+|+..++.+...|.+|.. .|+  +.+.+..+       ++.---.|.+... ....       -..+
T Consensus         6 ~~~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~~~a~l-------~~yDS~hG~f~~~-v~~~~~~l~i~Gk~I   77 (346)
T 3h9e_O            6 RELTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYM-------FKYDSTHGRYKGS-VEFRNGQLVVDNHEI   77 (346)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHH-------HHCCTTTCSCSSC-EEEETTEEEETTEEE
T ss_pred             CeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChhHhccc-------ccccCCCCCCCCc-EEEcCCEEEECCEEE
Confidence            346899999999999999988888888765 564  44444333       1111123544321 1111       1223


Q ss_pred             EEe--cCccccc----CCcEEEEecccCHHHHHHHHHHHHhhccCCe--EEeecCCC
Q 022407           74 RCT--SNLKDLH----SADIIVEAIVESEDVKKKLFSELDKITKASA--ILASNTSS  122 (297)
Q Consensus        74 ~~~--~~~~~~~----~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~--ii~s~ts~  122 (297)
                      ++.  .+++.+.    ++|+|++|....... +    ....+++.++  +|++++|.
T Consensus        78 ~v~~e~dp~~i~W~~~gvDiVlesTG~f~s~-e----~a~~hl~aGAkkVVIsaps~  129 (346)
T 3h9e_O           78 SVYQCKEPKQIPWRAVGSPYVVESTGVYLSI-Q----AASDHISAGAQRVVISAPSP  129 (346)
T ss_dssp             EEECCSSGGGCCGGGGTSCEEEECSSSCCSH-H----HHHHHHHTTCSEEEESSCCS
T ss_pred             EEEecCChhhCCcccccccEEEEeccccCCH-H----HHHHHHHcCCCEEEECCCCC
Confidence            333  2455555    899999997543321 1    1233444555  88888763

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=95.62  E-value=0.0082  Score=53.74  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~   37 (297)
                      ..|.|||+|..|.+.|..|+++  |++|+++|+.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4699999999999999999999  9999999975

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.60  E-value=0.09  Score=44.24  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++.+.++..
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQET   68 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34555566 8899999999999999999999998877655

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.57  E-value=0.13  Score=43.42  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-.-+++.|.|+ |-+|..+|..|++.|++|.+.+++.++++..
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   45 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLREL   45 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence            4333456777776 8899999999999999999999998876654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.57  E-value=0.039  Score=46.23  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.++++++++...+.+
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46677776 88999999999999999999999998877664443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.57  E-value=0.029  Score=46.81  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.++++++++..
T Consensus        15 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           15 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNEC   54 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56777776 8999999999999999999999998876654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.55  E-value=0.023  Score=49.56  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            689999999999999999999998 789999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.55  E-value=0.034  Score=46.96  Aligned_cols=41  Identities=32%  Similarity=0.473  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQ   53 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777776 899999999999999999999999988776543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.55  E-value=0.03  Score=49.03  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=34.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|. +|+..|+++++++.+
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  207 (352)
T 3fpc_A          168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA  207 (352)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence            579999999999988877777898 899999999887765

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.55  E-value=0.012  Score=53.29  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      ...+|+|||+|..|...|..|++.|+  +|+++|+++
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            45789999999999999999999999  999999863

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.54  E-value=0.032  Score=46.60  Aligned_cols=42  Identities=26%  Similarity=0.258  Sum_probs=35.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|.+.+++.+.++...+.
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   72 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE   72 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56777776 8999999999999999999999999887665433

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.54  E-value=0.008  Score=53.30  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|...|..|+++  |++|+++|+++.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            4799999999999999999999  999999998754

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=95.54  E-value=0.062  Score=45.23  Aligned_cols=44  Identities=32%  Similarity=0.314  Sum_probs=35.0

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |....++|.|.|+ |-+|..+|..|++.|++|++.+++.+.++..
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDL   45 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5444467777777 8999999999999999999999998876554

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.53  E-value=0.033  Score=47.01  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|+++.++..
T Consensus        30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT   69 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778877 8999999999999999999999998876554

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.52  E-value=0.018  Score=49.40  Aligned_cols=91  Identities=14%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-   82 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-   82 (297)
                      ..+|.|+|+ |.||..++..+.+.|++ .++..++.+.                 |.       . ...+.+..+++++ 
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~-----------------g~-------~-i~G~~vy~sl~el~   66 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKG-----------------GS-------E-VHGVPVYDSVKEAL   66 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------E-ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCC-----------------Cc-------e-ECCEeeeCCHHHHh
Confidence            357888899 99999999999988998 6666665421                 00       0 1124677777774 


Q ss_pred             c--C-CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           83 H--S-ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        83 ~--~-aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .  . +|++|.++|....  .+++.+..+. .-..+++ -|.+++.
T Consensus        67 ~~~~~~DvaIi~vp~~~~--~~~v~ea~~~-Gi~~vVi-~t~G~~~  108 (297)
T 2yv2_A           67 AEHPEINTSIVFVPAPFA--PDAVYEAVDA-GIRLVVV-ITEGIPV  108 (297)
T ss_dssp             HHCTTCCEEEECCCGGGH--HHHHHHHHHT-TCSEEEE-CCCCCCH
T ss_pred             hcCCCCCEEEEecCHHHH--HHHHHHHHHC-CCCEEEE-ECCCCCH
Confidence            3  4 9999999986553  3444444332 1232333 3556654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=95.52  E-value=0.0096  Score=55.33  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHH------------CCCcEEEEeCCH
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVM------------DGLDVWLVDTDP   38 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~------------~G~~V~~~d~~~   38 (297)
                      +...+|.|||+|.-|...|..|++            .|++|+++++.+
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~   52 (526)
T 2pyx_A            5 KPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD   52 (526)
T ss_dssp             SCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence            456789999999999999999999            999999999753

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.52  E-value=0.029  Score=46.93  Aligned_cols=39  Identities=26%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++.+..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778876 8999999999999999999999998776554

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.52  E-value=0.18  Score=41.94  Aligned_cols=39  Identities=26%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.++++++++..
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   52 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAV   52 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57878877 8999999999999999999999998766543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.51  E-value=0.21  Score=43.80  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++++.+
T Consensus       191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  229 (363)
T 3uog_A          191 DRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA  229 (363)
T ss_dssp             CEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH
Confidence            689999999999988888888999999999999887765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.51  E-value=0.042  Score=46.01  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777776 899999999999999999999999887765543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=95.51  E-value=0.011  Score=52.18  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus        12 ~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            5799999999999999999999999999998653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.49  E-value=0.037  Score=45.50  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.++++++++..
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   47 (244)
T 3d3w_A            8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL   47 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57888888 8999999999999999999999998776544

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.49  E-value=0.17  Score=42.74  Aligned_cols=42  Identities=31%  Similarity=0.425  Sum_probs=35.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+.
T Consensus        34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   76 (281)
T 4dry_A           34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGE   76 (281)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45666676 8899999999999999999999999887766443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.49  E-value=0.0084  Score=51.78  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .+|.|||+|..|...|..|++.|++|+++|.
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            5799999999999999999999999999997

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.49  E-value=0.028  Score=46.86  Aligned_cols=39  Identities=28%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++..
T Consensus        15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   54 (260)
T 2zat_A           15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT   54 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46777776 8999999999999999999999998876654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.48  E-value=0.16  Score=42.80  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            56777776 889999999999999999999999887766543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.47  E-value=0.034  Score=45.82  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEET   42 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46888877 8999999999999999999999998776554

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.46  E-value=0.046  Score=50.73  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|.+|+.+|. +++++|.+.
T Consensus        33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~   66 (531)
T 1tt5_A           33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   66 (531)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 799999764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.46  E-value=0.044  Score=47.36  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|+.++++...+.+
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            57888887 89999999999999999999999998887765443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.45  E-value=0.015  Score=49.10  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .+|.|||+|.-|...|..|++.|++|+++|.+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   34 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAG   34 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            58999999999999999999999999999964

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=95.45  E-value=0.0088  Score=55.36  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+|.|||+|..|...|..|++.|++|+++|+++
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.45  E-value=0.032  Score=47.02  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|.|+ |-+|..+|..|++.|++|++.+|++++++...
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   47 (278)
T 1spx_A            7 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETR   47 (278)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45666676 89999999999999999999999988776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	8e-38
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	7e-31
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	3e-26
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	8e-22
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	2e-21
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	1e-17
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	2e-04
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	7e-04
d3etja2	78	c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonuc	0.002

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  130 bits (327), Expect = 8e-38
 Identities = 65/182 (35%), Positives = 100/182 (54%)

Query: 4   KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ 63
            +K   V+G+G MG GIA      G  + + D +   + +     +  +   V KG+++ 
Sbjct: 3   DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTP 62

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A   +    +R T +  D  + D++VEA+VE+  VK+ + +E++   +  AILASNTS+I
Sbjct: 63  AKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI 122

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
           SI+ LA A  RP   +GMHF NP  +M LVEVIRG  +SD     T A A++ GK  +  
Sbjct: 123 SISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV 182

Query: 184 QD 185
            D
Sbjct: 183 ND 184

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 7e-31
 Identities = 75/190 (39%), Positives = 102/190 (53%), Gaps = 8/190 (4%)

Query: 4   KMKV--MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL 61
           K+ V  + V+G G MG+GIAQ+    G  V LVD   D L ++ K I  S++K   K   
Sbjct: 1   KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFA 60

Query: 62  SQAMGTDAPRRLR------CTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAI 115
                 D             T     +HS D++VEAIVE+  VK +LF  LDK      I
Sbjct: 61  ENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 120

Query: 116 LASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175
            ASNTSS+ IT +A+AT+R  +  G+HF NP P+MKLVEVI+   TS +TF +    ++ 
Sbjct: 121 FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKA 180

Query: 176 FGKTVVCSQD 185
            GK  V  +D
Sbjct: 181 LGKHPVSCKD 190

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 3e-26
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GFIVNR+L+P + EA      G A+KEDID  MKLG   PMGP +L D++GLD    I+ 
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 248 VLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
             H     +  + P P L + V   + GKK G G + Y+
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.4 bits (213), Expect = 8e-22
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMK 247
           GF+VNR+L P        +  GV     ID  M+     PMGP  L D +G+D       
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDF-VRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRD 58

Query: 248 VLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
           V+  G     K      +    +A RLG+K G G + Y
Sbjct: 59  VMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAY 96

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 84.1 bits (208), Expect = 2e-21
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
           I+N +++P+  E    L  G+     + D G+  G   P+   G L+  D IG+   +++
Sbjct: 7   IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL 66

Query: 246 MKVLHTGLGDSKYAPCPLLVQYVDAGR 272
                  LG   Y P   L +    G+
Sbjct: 67  ADQYAE-LGA-LYHPTAKLREMAKNGQ 91

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 77.7 bits (191), Expect = 1e-17
 Identities = 20/204 (9%), Positives = 53/204 (25%), Gaps = 26/204 (12%)

Query: 1   MEEKMKVMGVVGSGQMGSGIAQLGVMD------GLDVWLVDTDPDALVRATKSISSSI-- 52
           +       G      +   + ++ V D         V + + DP  ++ A  S +     
Sbjct: 39  LTHSSITYGA-ELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIM 97

Query: 53  ----QKFVSKGQLSQAMGTDAPRRLR--------CTSNLKDLHSADIIVEAIVESEDVKK 100
               +   +K +            +          + + + +  ADI++  + +      
Sbjct: 98  PKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPD 157

Query: 101 KLFSELDKITKASAILASNTS---SISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR 157
            +  +        AI+    +   +               +   H    P +   V +  
Sbjct: 158 -IIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAE 216

Query: 158 GADTSDETFRATKALAERFGKTVV 181
           G   S+E       + +       
Sbjct: 217 GY-ASEEAVNKLYEIGKIARGKAF 239

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 21/190 (11%), Positives = 49/190 (25%), Gaps = 23/190 (12%)

Query: 6   KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM 65
           K   V+G G  G   A    + G  V   D D   +       +   +           +
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPG--------L 53

Query: 66  GTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125
              A   L  +     +  AD+I+   V +        +    I++   I+ +  ++   
Sbjct: 54  AGTAHPDLLTSDIGLAVKDADVILIV-VPAIHHASIAANIASYISEGQLIILNPGATGGA 112

Query: 126 TRLAS--ATSRPCQVIGMHFMNPPPLMKLVE------------VIRGADTSDETFRATKA 171
                    +   +V      +     +               +      + +   A + 
Sbjct: 113 LEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQ 172

Query: 172 LAERFGKTVV 181
           +     + V 
Sbjct: 173 IGSVLPQYVA 182

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 21/187 (11%), Positives = 47/187 (25%), Gaps = 14/187 (7%)

Query: 5   MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKG-QLSQ 63
           M V GVVG G MG+ +A      G  V + +                 ++F+        
Sbjct: 2   MDV-GVVGLGVMGANLALNIAEKGFKVAVFNRTYSK-----------SEEFMKANASAPF 49

Query: 64  AMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123
           A    A   +   +         +I+     + D   +   ++ +         +     
Sbjct: 50  AGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKD 109

Query: 124 SITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS 183
              R     +   + +GM         +          +   +   + + E         
Sbjct: 110 QGRRAQQLEAAGLRFLGMGISGGEEGARKGPAF-FPGGTLSVWEEIRPIVEAAAAKADDG 168

Query: 184 QDYAGFI 190
           +      
Sbjct: 169 RPCVTMN 175

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 5  MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40
          MK + V+G+GQ+G  + Q G   G+ VW V  D + 
Sbjct: 1  MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.97
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.87
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.81
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.77
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.77
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.76
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.74
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.71
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.63
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.61
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.61
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.57
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.47
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.42
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.37
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.24
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.23
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.2
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.16
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.14
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.14
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.12
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.1
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.06
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.05
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.03
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.03
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.93
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.93
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.91
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.73
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.72
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.68
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.62
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.6
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.54
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.53
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.49
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.44
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.41
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.38
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.33
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.31
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.24
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.24
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.24
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.22
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.19
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.15
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.14
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.04
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	98.01
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.93
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.92
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.91
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.88
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.83
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.81
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.79
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.79
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.78
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.77
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.77
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.76
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.74
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.71
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.69
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.64
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.64
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.61
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.59
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.58
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.55
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.52
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.42
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.41
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.4
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.36
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.35
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.35
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.33
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.33
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.3
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.29
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.29
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.25
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.21
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.2
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.18
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.17
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.16
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.14
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.11
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.08
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.07
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.07
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.05
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.05
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.05
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.0
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.98
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.98
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.96
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.96
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.92
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.89
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.88
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.88
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.86
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.84
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.8
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.8
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.79
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.76
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.71
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.71
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.69
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.68
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.64
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.62
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.62
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.59
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.59
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.59
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.55
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.49
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.48
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.44
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.42
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.42
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.41
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.4
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.4
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.37
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.36
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.34
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.3
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.29
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.25
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.25
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.24
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.23
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.23
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.22
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.21
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.2
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.15
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.14
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.14
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.09
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.06
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.04
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.04
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.03
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.01
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.98
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.96
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.94
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.93
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.91
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.91
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.88
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.88
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.87
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.84
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.8
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.79
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	95.78
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.77
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.76
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.74
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.73
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.72
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.7
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.67
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.67
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.66
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.63
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.63
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.62
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.61
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	95.56
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.55
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.55
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.52
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.51
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.47
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.45
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.42
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.32
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.22
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.19
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.13
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.1
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.1
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.06
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.03
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	95.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.98
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.97
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.94
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.87
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.8
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.78
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.77
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.76
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.74
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.65
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.59
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.52
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.52
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	94.33
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.29
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.27
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.24
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.18
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.17
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	94.16
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.15
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.13
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.08
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.04
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.02
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.01
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.01
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	93.99
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	93.98
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	93.9
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.88
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.86
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.86
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.72
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.7
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.69
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	93.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.57
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	93.54
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.5
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.44
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	93.42
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.41
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.28
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.14
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.14
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.02
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	92.98
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.95
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	92.9
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.89
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	92.84
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	92.71
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	92.51
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.43
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.29
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.27
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.15
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	92.14
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	92.12
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.06
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.94
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.93
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.91
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	91.8
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	91.77
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	91.68
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.67
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.62
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	91.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	91.5
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	91.34
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	91.34
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.32
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.16
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	91.15
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	90.93
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	90.82
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	90.77
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.68
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.54
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.52
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.47
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	90.47
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.44
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	90.31
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	90.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.17
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	90.14
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	89.99
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	89.82
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	89.75
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	89.71
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	89.68
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.58
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	89.42
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	89.35
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	89.33
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.28
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.14
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.04
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	88.99
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.94
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	88.92
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.67
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.5
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	88.44
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.37
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	88.15
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	88.13
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	88.12
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	88.02
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.97
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.89
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	87.84
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	87.72
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	87.64
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	87.05
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	86.89
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	86.76
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	86.76
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	86.48
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.43
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	86.43
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	86.39
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	86.21
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	86.1
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	85.95
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	85.87
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	85.69
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.51
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.38
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.99
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	84.77
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	84.74
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	84.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	84.63
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.99
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	83.24
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.22
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	83.17
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	83.05
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.98
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.63
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	82.59
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	82.36
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	82.35
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	82.34
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	81.95
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	81.76
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	81.66
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	81.35
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	80.75
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	80.75
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.61
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	80.33
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.06

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1e-42  Score=281.62  Aligned_cols=185  Identities=35%  Similarity=0.533  Sum_probs=179.3

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      +.++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.+.++.+.+.+.....+..+.++..+++.+++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS  162 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~  162 (297)
                      .+||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.++++||+++..|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEeccch
Q 022407          163 DETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       163 ~~~~~~~~~l~~~lG~~~v~~~d~~  187 (297)
                      +++++.+..+++.+|+.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-42  Score=280.08  Aligned_cols=184  Identities=39%  Similarity=0.581  Sum_probs=173.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-----hhhcccCCceEEecC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-----AMGTDAPRRLRCTSN   78 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~i~~~~~   78 (297)
                      .++||+|||+|.||++||..++.+||+|++||++++.++++.+++++.++.+++++....     +..+..+.++..+++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            578999999999999999999999999999999999999999999999999999887642     334556788999999


Q ss_pred             ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEec
Q 022407           79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR  157 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~  157 (297)
                      +.+ +++||+||||+||+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.++++||++
T Consensus        83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~  162 (192)
T d1f0ya2          83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIK  162 (192)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEC
T ss_pred             hHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcC
Confidence            876 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEeccch
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~  187 (297)
                      +..|++++++.+..+++.+|+.|++++|.|
T Consensus       163 g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         163 TPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            999999999999999999999999999876

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=187.06  Aligned_cols=98  Identities=43%  Similarity=0.718  Sum_probs=93.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCC-CCCCCcHHHHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD-SKYAPCPLLVQ  266 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~-~~~~~~~~l~~  266 (297)
                      ||++||++.++++||++++++|++++++||.+++.++|+|+|||+++|.+|++++..+++.+.+..++ ++|.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999988775 47899999999


Q ss_pred             HHHcCCCCcccCCcccccC
Q 022407          267 YVDAGRLGKKRGIGVFDYR  285 (297)
Q Consensus       267 ~~~~g~~G~~~g~Gfy~y~  285 (297)
                      |+++|++|+|+|+|||+|.
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999994

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.95  E-value=2.5e-28  Score=182.70  Aligned_cols=99  Identities=31%  Similarity=0.463  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCC-CCCCcHHHHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDS-KYAPCPLLVQ  266 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~-~~~~~~~l~~  266 (297)
                      ||++||++.++++||++++++| +++++||.+++ ++|+|+|||+++|.+|||++.++++.+++.++++ .+.|++++++
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG-~~~~~ID~a~~-~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~   78 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDA   78 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh-hccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHH
Confidence            7999999999999999999999 47999999997 7999999999999999999999999999888763 5678889999


Q ss_pred             HHHcCCCCcccCCcccccCCCC
Q 022407          267 YVDAGRLGKKRGIGVFDYRRVP  288 (297)
Q Consensus       267 ~~~~g~~G~~~g~Gfy~y~~~~  288 (297)
                      |+++|++|+|+|+|||+|+++.
T Consensus        79 mv~~g~lG~Ktg~GFY~y~~~~  100 (124)
T d1wdka1          79 LYEAKRLGQKNGKGFYAYEADK  100 (124)
T ss_dssp             HHHTTCCBTTTTBSSSEEC---
T ss_pred             HHHcCCccccCCcEeeEcCCCC
Confidence            9999999999999999998654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.87  E-value=3.1e-21  Score=152.01  Aligned_cols=151  Identities=19%  Similarity=0.151  Sum_probs=117.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|||+|.||++||..|.++||+|++||++++.++++           .+.|...           ...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-----------~~~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-----------VERQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-----------HHhhccc-----------eeeeeccccccc
Confidence            589999999999999999999999999999999887776           4444321           355667779999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCCc------------
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK------------  151 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~------------  151 (297)
                      |+||.|+|.+  ....+++++.+.++++++|++.++....  ..+.+..   .++++.|++.++...+            
T Consensus        59 DiIilavp~~--~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~---~~~~~~h~~~~~~~~g~~~a~~~l~~~~  133 (165)
T d2f1ka2          59 KIIFLCTPIQ--LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW---SGFIGGHPMAGTAAQGIDGAEENLFVNA  133 (165)
T ss_dssp             SEEEECSCHH--HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS---TTCEEEEECCCCSCSSGGGCCTTTTTTC
T ss_pred             ccccccCcHh--hhhhhhhhhhhhcccccceeeccccchHHHHHHHHhh---cccccceeeecccccchhhhcccccCCC
Confidence            9999999854  4678899999999999988755543322  2233322   3678999987664321            


Q ss_pred             ceeEecCCCChHHHHHHHHHHHHHhCCeEEEe
Q 022407          152 LVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      .+-+++...++++.++.++++++.+|.+++++
T Consensus       134 ~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         134 PYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            23466777899999999999999999998764

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.87  E-value=3.5e-22  Score=141.32  Aligned_cols=86  Identities=27%  Similarity=0.472  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022407          188 GFIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL  263 (297)
Q Consensus       188 g~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  263 (297)
                      ..|+||++.+++|||++++++|++ +++|||.++..|+|||+   |||+++|.+|++.+++.++.+. .+++ +|+|+++
T Consensus         5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~-r~~p~~~   82 (95)
T d1wdka2           5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGA-LYHPTAK   82 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCG-GGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCC-CCCCCHH
Confidence            469999999999999999999997 79999999999999999   9999999999999999999874 5775 9999999


Q ss_pred             HHHHHHcCCCCcccCCccc
Q 022407          264 LVQYVDAGRLGKKRGIGVF  282 (297)
Q Consensus       264 l~~~~~~g~~G~~~g~Gfy  282 (297)
                      |++|+++       |+|||
T Consensus        83 L~~~~~~-------g~~Fy   94 (95)
T d1wdka2          83 LREMAKN-------GQSFF   94 (95)
T ss_dssp             HHHHHHT-------TCCSC
T ss_pred             HHHHHHh-------CcCCC
Confidence            9999865       47999

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=2e-20  Score=146.71  Aligned_cols=153  Identities=18%  Similarity=0.289  Sum_probs=107.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||||||+|.||.+||.+|+++||+|++||+++++++.+           .+.+.             ...++.++ +++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~-------------~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-----------IAAGA-------------ETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH-----------HHhhh-------------hhcccHHHHHhC
Confidence            589999999999999999999999999999999988776           44443             45666666 889


Q ss_pred             CcEEEEecccCHHHHHHHHH--HHHhhccCCeEEee-cCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEec
Q 022407           85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILAS-NTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVIR  157 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s-~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~~  157 (297)
                      ||+||.|+|++..++..++.  .+.+..+++++|+. +|+++.. .++++.+. ...+++.......|..  .+...++.
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            99999999988877665553  36667777776663 3333322 34554442 2334444332221111  11234454


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +  ++++.+++++++|+.++.++++++
T Consensus       137 g--G~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 G--GDKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             E--SCHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             c--CCHHHHHHHHHHHHHhcCceEECC
Confidence            4  689999999999999999998874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=6.8e-19  Score=137.90  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      |+||+|||+|.||++||.+|+++||+|.+||+++++.+.+           .+.+.             ....++.+ ++
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-----------~~~~~-------------~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-----------VAAGA-------------SAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-----------HHTTC-------------EECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-----------hhhhc-------------cccchhhhhcc
Confidence            3689999999999999999999999999999999987765           34443             34455555 88


Q ss_pred             CCcEEEEecccCHHHHHHHHHH---HHhhccCCeEEe-ecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeE
Q 022407           84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEV  155 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev  155 (297)
                      .+|+|+.|++.+.... .++..   +.....++.+|+ ++|+++.. .++++.+. ...+++..+....|..  .+.+.+
T Consensus        57 ~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          57 GADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             SCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             ccCeeeecccchhhHH-HHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            9999999999877654 44432   555566666555 44444333 34555442 2345554433332221  112345


Q ss_pred             ecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          156 IRGADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +.+  ++++++++++++++.+|+++++++
T Consensus       136 ~~g--G~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVG--GDAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEE--SCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             Eec--CCHHHHHHHHHHHHHHcCccEECc
Confidence            444  689999999999999999998874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.77  E-value=7.8e-18  Score=130.38  Aligned_cols=148  Identities=19%  Similarity=0.270  Sum_probs=116.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      |||+|||+|.||.+|+..|.++| ++|.+|||++++++.+.+          +.|             +...++.+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~----------~~~-------------~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK----------ELG-------------VETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH----------HTC-------------CEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh----------hcc-------------cccccccccccc
Confidence            58999999999999999998887 999999999998877621          112             356777888899


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecCCCChH
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGADTSD  163 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~~~~~~  163 (297)
                      ||+||.|++  +.....+++   ++.+.+.+++|...+++++.+.+.++...+++..++..|......+. +..+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~---~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACK---NIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHT---TCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHH---HHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999996  222333433   33455788999999999999999987777899999888876555443 556666789


Q ss_pred             HHHHHHHHHHHHhCCeEE
Q 022407          164 ETFRATKALAERFGKTVV  181 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v  181 (297)
                      +..+.+..+|..+|+..+
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.76  E-value=1.5e-17  Score=131.31  Aligned_cols=151  Identities=19%  Similarity=0.233  Sum_probs=114.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--   81 (297)
                      ++|+|||+|.||.+||..|.++|+  +|+.||++++.++.+           .+.+...           ...++.+.  
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-----------~~~~~~~-----------~~~~~~~~~~   59 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-----------VDLGIID-----------EGTTSIAKVE   59 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-----------HHTTSCS-----------EEESCGGGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-----------HHhhcch-----------hhhhhhhhhh
Confidence            579999999999999999999996  688899999988776           4444432           23344443  


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCC---------
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLM---------  150 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~---------  150 (297)
                      ..++|+||.|+|.+.  ..+++.++.+++++++++...+|.-..  +.+...+  +.++++.||+......         
T Consensus        60 ~~~~dlIila~p~~~--~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~L  135 (171)
T d2g5ca2          60 DFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDNL  135 (171)
T ss_dssp             GTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSST
T ss_pred             ccccccccccCCchh--hhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHHh
Confidence            458999999998543  567888899999999998866664332  4555544  3579999997654322         


Q ss_pred             ---cceeEecCCCChHHHHHHHHHHHHHhCCeEEE
Q 022407          151 ---KLVEVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       151 ---~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                         ..+-++++..++++.++.++++|+.+|.+++.
T Consensus       136 f~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         136 YEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence               12446777888999999999999999998875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=5.9e-18  Score=130.98  Aligned_cols=147  Identities=16%  Similarity=0.189  Sum_probs=113.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||+|||+|.||++|+..|.++|++|++|++++++.+++.+          +.|.             ....+.++ ++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~----------~~g~-------------~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAE----------QLAL-------------PYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHH----------HHTC-------------CBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcc----------ccce-------------eeechhhhhhhc
Confidence            58999999999999999999999999999999988766521          1122             34556665 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC-cceeEecCCCChH
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-KLVEVIRGADTSD  163 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-~~vev~~~~~~~~  163 (297)
                      ||+||.|++.+  ...++    .+.+.++.+|+|.+++++++.+.+.++...+++..+|..|..+. +...+..+...++
T Consensus        58 ~dvIilavkp~--~~~~v----l~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIKPQ--LFETV----LKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSCGG--GHHHH----HTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecchH--hHHHH----hhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            99999999632  23333    34456778888999999999999888776778888876555433 3345666777889


Q ss_pred             HHHHHHHHHHHHhCCeEE
Q 022407          164 ETFRATKALAERFGKTVV  181 (297)
Q Consensus       164 ~~~~~~~~l~~~lG~~~v  181 (297)
                      +..+.++++|+.+|+...
T Consensus       132 ~~~~~v~~l~~~~G~~~~  149 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTFD  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=4.5e-17  Score=126.03  Aligned_cols=140  Identities=17%  Similarity=0.233  Sum_probs=105.5

Q ss_pred             CCCCCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+..++||+||| +|.||.+||.+|.++||+|++||++++....                                    
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------   48 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------   48 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------
Confidence            566788999999 8999999999999999999999998653221                                    


Q ss_pred             ccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-H-HHHhhhcCCCCeEEEeecCCCCCCCc----ce
Q 022407           80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-I-TRLASATSRPCQVIGMHFMNPPPLMK----LV  153 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~-~~l~~~~~~~~~~~g~h~~~p~~~~~----~v  153 (297)
                      ..++++|+++.++|...  ...++.++.+.++++++++..+|.-+ + +.+.+.+  +.++++.||+..|....    .+
T Consensus        49 ~~~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~--~~~~v~~hP~~Gp~~~~~~g~~~  124 (152)
T d2pv7a2          49 SILANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVV  124 (152)
T ss_dssp             HHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEE
T ss_pred             hhhhhccccccccchhh--heeeeecccccccCCceEEEecccCHHHHHHHHHHc--cCCEEEecccCCCcccccCCcEE
Confidence            12457899999998654  45677888888888888775544322 2 4454443  46899999998775443    23


Q ss_pred             eEecCCCChHHHHHHHHHHHHHhCCeEEE
Q 022407          154 EVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      .++++  ++++.++++.++|+.+|.+++.
T Consensus       125 v~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         125 VRCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence            34444  5678899999999999999875

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=1.2e-16  Score=131.19  Aligned_cols=175  Identities=11%  Similarity=0.105  Sum_probs=123.2

Q ss_pred             cEEEEECCCh--hHHHHHH------HHHHCCCcEEEEeCCHHHH-HHHHH--------HHHHHHHHHHHcCCCChhhhcc
Q 022407            6 KVMGVVGSGQ--MGSGIAQ------LGVMDGLDVWLVDTDPDAL-VRATK--------SISSSIQKFVSKGQLSQAMGTD   68 (297)
Q Consensus         6 ~~V~iiG~G~--mG~~iA~------~l~~~G~~V~~~d~~~~~~-~~~~~--------~~~~~~~~~~~~g~~~~~~~~~   68 (297)
                      .++.++|+|.  ||.+|+.      +|++.|+.|++.|.++++. +++.+        .+++...+..+.....+...-.
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4577888887  8888887      6899999999999998764 43332        2223323323333211111100


Q ss_pred             c----CCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcC-CCCeEE
Q 022407           69 A----PRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATS-RPCQVI  139 (297)
Q Consensus        69 ~----~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~  139 (297)
                      .    ...+++++|..+ +++||+||+|+|++. .+++++++|.+.+++++||+..++ +++   .++.+.+. ++.+++
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~-~v~~Vi~~I~~~l~~g~Iiid~ST-i~~~~~~~l~e~l~~kgi~vi  198 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVTHACT-IPTTKFAKIFKDLGREDLNIT  198 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEEECSS-SCHHHHHHHHHHTTCTTSEEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHH-HHHHHHHHHHhhCCCCcEEEecCC-CcHHHHHHHHHhcccCCCEEE
Confidence            1    122567777766 999999999999764 467888999999999999874443 333   45666665 357899


Q ss_pred             EeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEe
Q 022407          140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCS  183 (297)
Q Consensus       140 g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~  183 (297)
                      +.||+.+|...+...++.+ .++++.++++.++|+.+|++++++
T Consensus       199 ~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         199 SYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             ECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            9999999876665555444 578999999999999999998875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=2.2e-15  Score=119.43  Aligned_cols=157  Identities=15%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc----c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK----D   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~   81 (297)
                      |||||||+|.||.+||.+|+++||+|++|||++++.+++           .+.+.....     ...+....+.+    .
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l-----------~~~~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEF-----------MKANASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH-----------HHHTTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHcCCcccc-----ccchhhhhhhhHHHHh
Confidence            589999999999999999999999999999999998876           444432111     11122222222    2


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhc-CCCCeEEEeecCCCCCCC-cceeEec
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASAT-SRPCQVIGMHFMNPPPLM-KLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~-~~~~~~~g~h~~~p~~~~-~~vev~~  157 (297)
                      +..++.++++++....+. .++..+...+.++.+++ ++|..... ..+++.+ .....++.......+... ....++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mv  144 (178)
T d1pgja2          66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFP  144 (178)
T ss_dssp             BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEe
Confidence            567888999888776654 45566666677776665 33333332 3455554 334466655444433111 1123454


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEE
Q 022407          158 GADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v  181 (297)
                      +  ++++++++++++|+.++.++.
T Consensus       145 g--G~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         145 G--GTLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             E--ECHHHHHHHHHHHHHHSCBCT
T ss_pred             e--CCHHHHHHHHHHHHHHhcccc
Confidence            4  689999999999999998876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.61  E-value=5.4e-16  Score=122.81  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC---c-cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN---L-KD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~-~~   81 (297)
                      .+|+|||+|.||.+||.+|+++||+|++|||++++++.+           .+.+...        .......+   + +.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~--------~~~~~a~~~~~~~~~   63 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDF-----------LANEAKG--------TKVLGAHSLEEMVSK   63 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHH-----------HHTTTTT--------SSCEECSSHHHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHhcccc--------ccccchhhhhhhhhh
Confidence            579999999999999999999999999999999998876           3333210        01112222   2 23


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC-CCccH-HHHhhhcC-CCCeEEEeecCCCCCCC-cceeEec
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT-SSISI-TRLASATS-RPCQVIGMHFMNPPPLM-KLVEVIR  157 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t-s~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~~-~~vev~~  157 (297)
                      +..+|.+|.+++....+. .++..+.+.++++.+++..+ ..+.. .++++.+. ...+++.......|... ....++.
T Consensus        64 ~~~~~~ii~~~~~~~~v~-~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~  142 (176)
T d2pgda2          64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMP  142 (176)
T ss_dssp             BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEE
T ss_pred             hcccceEEEecCchHHHH-HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEc
Confidence            778999999999887754 46677777888877666333 33322 34444432 22344443322221100 0113444


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEE
Q 022407          158 GADTSDETFRATKALAERFGKTVV  181 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v  181 (297)
                      +  ++++++++++++|+.++.++.
T Consensus       143 g--G~~~~~~~~~~il~~~~~kv~  164 (176)
T d2pgda2         143 G--GNKEAWPHIKAIFQGIAAKVG  164 (176)
T ss_dssp             E--ECTTTHHHHHHHHHHHSCBCT
T ss_pred             C--CCHHHHHHHHHHHHHHhcccC
Confidence            4  688899999999999998864

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=2.7e-16  Score=121.70  Aligned_cols=143  Identities=10%  Similarity=0.028  Sum_probs=92.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCcE
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI   87 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~   87 (297)
                      |+|||+|+||++|+..|.+.++.+.+|+|++++++++           .+.+..            .+.+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l-----------~~~~~~------------~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNL-----------AEVYGG------------KAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHH-----------HHHTCC------------CCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcch-----------hhcccc------------cccchhhhhccCcE
Confidence            7999999999999998877655567999999998876           333321            12333344899999


Q ss_pred             EEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc-------ceeEecCCC
Q 022407           88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-------LVEVIRGAD  160 (297)
Q Consensus        88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-------~vev~~~~~  160 (297)
                      ||.|+|++.  ..++..+|   ..++.++++.+++.+.+.+..     ....+.||+.++....       ..-++.  +
T Consensus        59 Vil~v~d~~--i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  126 (153)
T d2i76a2          59 VFVIVPDRY--IKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGL--E  126 (153)
T ss_dssp             EEECSCTTT--HHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEE--C
T ss_pred             EEEeccchh--hhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEE--e
Confidence            999999754  33444433   346788887777777655433     2345678766542111       122222  3


Q ss_pred             ChHHHHHHHHHHHHHhCCeEEEecc
Q 022407          161 TSDETFRATKALAERFGKTVVCSQD  185 (297)
Q Consensus       161 ~~~~~~~~~~~l~~~lG~~~v~~~d  185 (297)
                      +++++++.++++++.+|.+++++.+
T Consensus       127 gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         127 GDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             CCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             CCHHHHHHHHHHHHHHCCcEEEeCC
Confidence            5788999999999999999988754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.57  E-value=1.5e-15  Score=117.26  Aligned_cols=148  Identities=12%  Similarity=0.142  Sum_probs=96.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      |||+|||+|.||++||..|+++||+|++||+++.......           ..+.             .+..+.++ +++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~-----------~~~~-------------~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER-----------ARTV-------------GVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH-----------HHHH-------------TCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh-----------hhcc-------------cccccHHHHHhh
Confidence            5899999999999999999999999999998877654431           1111             12334555 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-HHHHhhhcCCCCeEEEeecCCCCCCC--cceeEecCCCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLM--KLVEVIRGADT  161 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~--~~vev~~~~~~  161 (297)
                      ||+||.|+|.+...  ++..++.... +..++..+|.+.. ..++++.+.. ..++....+.++...  ...-++.|  .
T Consensus        57 ~diIi~~v~~~~~~--~~~~~~~~~~-~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G--~  130 (152)
T d1i36a2          57 CPVVISAVTPGVAL--GAARRAGRHV-RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASG--R  130 (152)
T ss_dssp             SSEEEECSCGGGHH--HHHHHHHTTC-CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEES--T
T ss_pred             cCeEEEEecCchHH--HHHHhhcccC-CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEEC--C
Confidence            99999999976543  3444555544 3455544444443 3567776643 457766666654221  12334555  3


Q ss_pred             hHHHHHHHHHHHHHhCCeEEEeccch
Q 022407          162 SDETFRATKALAERFGKTVVCSQDYA  187 (297)
Q Consensus       162 ~~~~~~~~~~l~~~lG~~~v~~~d~~  187 (297)
                      +.+.++    .++.+|..+.++++.|
T Consensus       131 ~~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         131 DAEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             THHHHH----GGGGGTCEEEECSSST
T ss_pred             CHHHHH----HHHHcCCeeeEcCCCC
Confidence            444444    3678999998887754

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=8e-16  Score=119.36  Aligned_cols=145  Identities=15%  Similarity=0.203  Sum_probs=99.1

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD   86 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD   86 (297)
                      ||+|||+|.||.+||.+|+++|+.| +|+++.++....           .+.+.             ....+.+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~-----------~~~~~-------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRH-----------QEEFG-------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHH-----------HHHHC-------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHH-----------HHHcC-------------Cccccccccccee
Confidence            7999999999999999999999866 677777765544           22211             1344556688999


Q ss_pred             EEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCC-------cceeEec
Q 022407           87 IIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KLVEVIR  157 (297)
Q Consensus        87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vev~~  157 (297)
                      ++|.++|.+.++.. ....+.....++.+++ ++|.++.. .++++.+..    .+.+|++.|-..       +.+.++.
T Consensus        57 ~~i~~~~~~~~v~~-~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~----~gi~~ldapVsGg~~~A~~G~L~~~v  131 (156)
T d2cvza2          57 VIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLRE----KGVTYLDAPVSGGTSGAEAGTLTVML  131 (156)
T ss_dssp             EEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEEE
T ss_pred             EEEecccchhhhhh-hhccccccccccccccccccCCHHHHHHHHHHHHH----cCCeEEeccccCchhhhccCCEEEEE
Confidence            99999998776553 4556666666777665 44444333 456655532    145566655211       1234555


Q ss_pred             CCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407          158 GADTSDETFRATKALAERFGKTVVCSQ  184 (297)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~  184 (297)
                      +  +++++++++++++ .+++++++++
T Consensus       132 g--G~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2         132 G--GPEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             E--SCHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             e--CCHHHHHHHHHHH-HhcCcCEEeC
Confidence            4  7999999999999 5899998885

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.47  E-value=1.4e-13  Score=109.12  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=75.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh--hhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ--AMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +||+|||+|.||.++|..|+++||+|++||+++++++...           +.+....  ............+++.++ +
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-----------DRGAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            6899999999999999999999999999999998877662           2221110  011111222344566666 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      ++||+||.++|...  .+.++.++.+++.++++|+..
T Consensus        71 ~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 KDADVILIVVPAIH--HASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEEe
Confidence            99999999998766  578899999999988877643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=1.9e-12  Score=104.21  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=97.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.        ....+.+..            ...++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~------------~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR------------QTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh------------cccccccCC
Confidence            589999999999999999999999999999999988876421        111121112            224567888


Q ss_pred             Cccc-ccCCcEEEEecccCH--------HHHHHHHHHHHhh---ccCC-eEEeecCCCccHH-HHh-----hhcCC--CC
Q 022407           78 NLKD-LHSADIIVEAIVESE--------DVKKKLFSELDKI---TKAS-AILASNTSSISIT-RLA-----SATSR--PC  136 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~---~~~~-~ii~s~ts~~~~~-~l~-----~~~~~--~~  136 (297)
                      +..+ +++||+++.|+|.+.        .....+...+...   ..++ .++..+|..+... .+.     .....  ..
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~  148 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGV  148 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccc
Confidence            8877 899999999998742        2233444444333   2334 4555555444332 221     11111  11


Q ss_pred             e-EEEeecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCeEEE
Q 022407          137 Q-VIGMHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVC  182 (297)
Q Consensus       137 ~-~~g~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~~v~  182 (297)
                      . .+.   ++|-.+.+.         --++.| ..+++..+.+..+++.+...++.
T Consensus       149 ~~~~~---~~PE~~~~G~a~~d~~~~~~iViG-~~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         149 DFGVG---TNPEFLRESTAIKDYDFPPMTVIG-ELDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TBEEE---ECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHHTTSSSCEEE
T ss_pred             cccch---hhhhhhcccchhhhhcCCCeEEEE-eCCHHHHHHHHHHHHhcCCCeEe
Confidence            1 122   233322210         113333 15788999999999998766553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.42  E-value=4.8e-13  Score=106.47  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~   83 (297)
                      ++||+|||+|.||.++|..|+++||+|++|+|+++.++.+.+.        .+.-..-+  --....++.+++++++ ++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~--------~~n~~yl~--~~~l~~~i~~t~~l~~a~~   76 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLK--GVQLASNITFTSDVEKAYN   76 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH--------TBCTTTST--TCBCCTTEEEESCHHHHHT
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc--------cccccccc--ccccccccccchhhhhccC
Confidence            4689999999999999999999999999999999887765321        10001000  0123467889999887 89


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhh-----ccCCeEEeecCCCcc
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKI-----TKASAILASNTSSIS  124 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~-----~~~~~ii~s~ts~~~  124 (297)
                      +||+||.++|...  .+.+++++.+.     .+++.++++.+.++.
T Consensus        77 ~ad~iiiavPs~~--~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          77 GAEIILFVIPTQF--LRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             TCSCEEECSCHHH--HHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             CCCEEEEcCcHHH--HHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            9999999998543  56677766542     345666776777664

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.37  E-value=7e-13  Score=104.86  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      |||+|||+|.||.++|..|+++|++|++|.|+.+  .++..           .+...............+..++++++ +
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI-----------SAGREHPRLGVKLNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH-----------HTTCCBTTTTBCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHH-----------hhhhhhhhhcchhccccccccccHHHHH
Confidence            6899999999999999999999999999988543  33332           11111111111112234556777776 8


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +++|+||.++|...  .+.+++++.+++++..++..+.
T Consensus        70 ~~ad~Ii~avps~~--~~~~~~~l~~~l~~~~ii~~tk  105 (180)
T d1txga2          70 ENAEVVLLGVSTDG--VLPVMSRILPYLKDQYIVLISK  105 (180)
T ss_dssp             TTCSEEEECSCGGG--HHHHHHHHTTTCCSCEEEECCC
T ss_pred             hccchhhcccchhh--hHHHHHhhccccccceeccccc
Confidence            99999999998654  6788999999988877666433

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.24  E-value=6e-11  Score=89.90  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=77.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (297)
                      .+||+|||+|.+|..+|..|+..|  .+|.++|+++++++.....+++.        .      .........+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a--------~------~~~~~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA--------Q------AFTAPKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG--------G------GGSCCCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc--------c------cccCCceEeeccHHHh
Confidence            469999999999999999999987  48999999998765432222111        0      0111234567788899


Q ss_pred             cCCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEe-ecCCCccHHHHhhhcCCC-CeEEEe
Q 022407           83 HSADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA-SNTSSISITRLASATSRP-CQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~~~l~~~~~~~-~~~~g~  141 (297)
                      ++||+||.+....              ..+.+++..+|.++.+...++. ||...+....+.+....| .|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            9999999986321              2234556666777765554433 333322223444444443 567764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.23  E-value=9.5e-11  Score=89.10  Aligned_cols=124  Identities=14%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .-+||+|||+|.+|..+|..++..|+  ++.++|+++++++.....+.+.    ..   +      ........+.++++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~----~~---~------~~~~~~~~~~d~~~   71 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG----KV---F------APKPVDIWHGDYDD   71 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----TT---S------SSSCCEEEECCGGG
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC----cc---c------cCCCeEEEECCHHH
Confidence            34799999999999999999998876  7999999998765433222221    00   0      01112234677888


Q ss_pred             ccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           82 LHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        82 ~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      +++||+||.+...              +..+.+++..++.+++++..++. -|....+  ..+.+.... +.|++|+
T Consensus        72 l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~iv-vtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLV-ATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEE-CSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEE-ecCccHHHHHHHHHHHCcChhheecC
Confidence            9999999987632              12345566677888876554333 3443333  334444333 3677764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.7e-12  Score=99.91  Aligned_cols=107  Identities=10%  Similarity=0.041  Sum_probs=75.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      |||+|||+|.||+.+|..|+++||+|++++|+++..+..           ...+.    +. .........++.+.+..+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~----~~-~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET----DG-SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT----TS-CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccC----Cc-cccccccccchhhhhccc
Confidence            689999999999999999999999999999987643321           00010    00 001112234444558899


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhh
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS  130 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~  130 (297)
                      |+||.+++...  ...+++.+.+...++++|++...++...+...
T Consensus        65 D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l~  107 (167)
T d1ks9a2          65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQ  107 (167)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGT
T ss_pred             ceEEEeecccc--hHHHHHhhccccCcccEEeeccCcccHHHHHh
Confidence            99999997544  45778889999888888887777776644333

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.16  E-value=1.3e-10  Score=88.86  Aligned_cols=128  Identities=16%  Similarity=0.242  Sum_probs=81.6

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      |+++.+||+|||+|.+|..+|..++..++ ++.++|+++++++.....+++.....   +         ....+..+++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~---~---------~~~~~~~~~~~   70 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSY   70 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSH
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc---C---------CeeEEeccCch
Confidence            56667899999999999999999888886 89999999987766544444432211   1         11234455665


Q ss_pred             cc-ccCCcEEEEecc------------cC-------HHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CC
Q 022407           80 KD-LHSADIIVEAIV------------ES-------EDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PC  136 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~------------e~-------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~  136 (297)
                      ++ +++||+||.+..            +.       ..+.+++..++.+++++ ++++..|..+..  ..+.+.... +.
T Consensus        71 ~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~  149 (154)
T d1pzga1          71 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTN  149 (154)
T ss_dssp             HHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGG
T ss_pred             hhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChh
Confidence            54 899999998762            11       12455566667777765 444434544433  333333333 35


Q ss_pred             eEEEe
Q 022407          137 QVIGM  141 (297)
Q Consensus       137 ~~~g~  141 (297)
                      |++|+
T Consensus       150 rViG~  154 (154)
T d1pzga1         150 MICGM  154 (154)
T ss_dssp             GEEEC
T ss_pred             cEecC
Confidence            77764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.14  E-value=1.7e-10  Score=87.16  Aligned_cols=123  Identities=17%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|.++|..++..|.  ++.++|+++++++.....+.+....            .....++..+++.++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~------------~~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV------------GLFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch------------hcccceEEecCCHHHhc
Confidence            589999999999999999999884  8999999998766543222221110            01123455577888899


Q ss_pred             CCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           84 SADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      +||+|+.+.  |..            ..+.+++...+.++++ +++++.-|.....  ..+.+.... +.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            999999985  221            1234455566777775 4554433433332  233333333 3577764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.14  E-value=3.6e-10  Score=85.11  Aligned_cols=123  Identities=18%  Similarity=0.226  Sum_probs=78.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      |||+|||+|.+|..+|..++..|.  ++.++|++++.++.....+++...    .-        ....++..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~----~~--------~~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA----GI--------DKYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH----TT--------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc----cc--------CCCCccccCCCHHHhc
Confidence            599999999999999999998875  799999999886654333333221    00        1123456677888999


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      +||+||.+...              +..+.+++..++.++++ +++++..|..+++  ..+.+.... +.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            99999987631              11233344455666654 5555545555544  233333333 4667764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.12  E-value=5.7e-10  Score=84.01  Aligned_cols=122  Identities=16%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|||+|.+|+.+|..++..|+  ++.++|+++++++.....+++...             .....++..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-------------~~~~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-------------FYPTVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-------------GSTTCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-------------cCCCceeecCCCHHHhh
Confidence            589999999999999999999887  899999999876543222222100             01123455677888899


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      +||+||.+.-.              +..+.+++..++.++.+...+ +..|..+.+  ..+.+.... +.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~-ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIY-MLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEE-EECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEE-EEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            99999987621              223455566667777755543 333444433  333343333 3677764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.10  E-value=2.4e-10  Score=86.49  Aligned_cols=121  Identities=15%  Similarity=0.314  Sum_probs=75.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+.+|..++..|.  ++.++|+++++++.....+.+...    .         ........+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~----~---------~~~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA----N---------LEAHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----G---------SSSCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc----c---------cCCccceeccCHHHhc
Confidence            699999999999999999998775  899999999876654333332211    0         0111223467788899


Q ss_pred             CCcEEEEeccc------------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEE
Q 022407           84 SADIIVEAIVE------------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIG  140 (297)
Q Consensus        84 ~aD~Vi~~v~e------------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g  140 (297)
                      +||+||.+...                  +..+.+++...+.++++ +++++.-|....+  ..+.+....| .|++|
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG  145 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence            99999987531                  11233445555666664 5555545555443  3333443333 56666

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=1.4e-09  Score=81.65  Aligned_cols=119  Identities=23%  Similarity=0.341  Sum_probs=74.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCc-eEEecCcccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRR-LRCTSNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~   82 (297)
                      +||+|||+|.+|..+|..++..+.  ++.++|+++++++.....+.+..               ....+ ...+++++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---------------~~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---------------PFTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---------------cccccccccCCcHHHh
Confidence            589999999999999999888775  89999999987665333222211               01111 2345677889


Q ss_pred             cCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEE
Q 022407           83 HSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIG  140 (297)
Q Consensus        83 ~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g  140 (297)
                      ++||+||.+...              +..+.+++...+.++++.. +++.-|....+  ..+.+.... +.|++|
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~a-ivivvtNPvd~~t~~~~k~sg~p~~rViG  139 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDS-IVIVVTNPVDVLTYFFLKESGMDPRKVFG  139 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTC-EEEECSSSHHHHHHHHHHHHTCCTTTEEE
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCc-EEEEeCCcHHHHHHHHHHHHCcCccceeC
Confidence            999999998621              1223445556677777655 44434444333  233333332 356665

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.05  E-value=4.2e-10  Score=89.76  Aligned_cols=116  Identities=16%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+|||+|.+|.++|..|+ .||+|+.||.++++++.+.+..    +..++.+.+..          ..++....+...
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~----------~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK----------QLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh----------hhhhhccchhhh
Confidence            58999999999999998776 6999999999999988764321    11222222221          233445555444


Q ss_pred             -ccCCcEEEEecccCHH---------HHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhc
Q 022407           82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILASNTSSISI-TRLASAT  132 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~  132 (297)
                       ..++|+++.|+|.+..         ........+....+...++..+|..+.. +++....
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~  131 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKF  131 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHT
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeecc
Confidence             7899999999987542         2333444455544444444443333332 3444433

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.03  E-value=2.1e-09  Score=82.22  Aligned_cols=121  Identities=20%  Similarity=0.204  Sum_probs=76.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      +||+|||+|.+|+.+|..++..|+  ++.++|++++.++.....+.+.        .     .......+....++++++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~--------~-----~~~~~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG--------S-----LFLQTPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT--------G-----GGCCCSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc--------c-----cccCCCeEEeccchhhcc
Confidence            699999999999999999999998  8999999988765433222221        0     001112334567788899


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEE
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIG  140 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g  140 (297)
                      +||+|+.+...              +..+.+++..++.+..+ +++++.-|...++  ..+.+....| .|++|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            99999986521              12244555666777765 4444434444443  3344443433 56654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.03  E-value=8.3e-10  Score=83.15  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=77.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||+|||+|.+|..+|..++..+. ++.++|++++..+.....+++....            .....+++.+++++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~------------~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPI------------EGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccc------------cCCCCEEEecCcHHHhcC
Confidence            599999999999999999988776 8999999988766543333222110            111234566788999999


Q ss_pred             CcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHh-hhcCC-CCeEEE
Q 022407           85 ADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTSSISI-TRLA-SATSR-PCQVIG  140 (297)
Q Consensus        85 aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~-~~~~~-~~~~~g  140 (297)
                      +|+||.+....              ..+.+++..++.++++ +++++..|..+.. ..++ +.... +.|++|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            99999987321              1233455556777665 4455445554443 3333 32232 345655

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.93  E-value=6.6e-09  Score=78.68  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=78.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      ..||+|||+|.+|+.+|..+...+. ++.++|++++.++.....+.+....  .          .....+..++++++++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~--~----------~~~~~v~~~~~~~~~~   70 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM--A----------YSNCKVSGSNTYDDLA   70 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH--H----------TCCCCEEEECCGGGGT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc--c----------CCCcEEEecccccccC
Confidence            3699999999999999998888775 8999999998776554444433111  0          1112344567788899


Q ss_pred             CCcEEEEeccc------------CH-------HHHHHHHHHHHhhccCCeEEeecCCCccH-H-HHhhhcCC-CCeEEEe
Q 022407           84 SADIIVEAIVE------------SE-------DVKKKLFSELDKITKASAILASNTSSISI-T-RLASATSR-PCQVIGM  141 (297)
Q Consensus        84 ~aD~Vi~~v~e------------~~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~l~~~~~~-~~~~~g~  141 (297)
                      +||+||.+.-.            ..       .+.+++...+.++++ +++++.-|....+ . .+.+.... +.|++|+
T Consensus        71 ~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            99999987631            11       134455556777765 5555444554443 2 33333332 3567764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.93  E-value=2.3e-09  Score=80.75  Aligned_cols=105  Identities=16%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE--EecC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR--CTSN   78 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~--~~~~   78 (297)
                      |||+|||+ |.+|..+|..++..|.  ++.++|++++.  ++.....+.+.    ... .       ....++.  .+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~----~~~-~-------~~~~~~~~~~~~d   68 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA----LAG-T-------RSDANIYVESDEN   68 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHH----HTT-S-------CCCCEEEEEETTC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhc----ccc-c-------ccCCccccCCcch
Confidence            58999996 9999999999999985  99999998643  22222222221    110 0       0011222  3446


Q ss_pred             cccccCCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           79 LKDLHSADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        79 ~~~~~~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++++++||+||.+.  |..            ..+.+++..++.++++ +.+++ -|..+.
T Consensus        69 ~~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv-VtNPvD  126 (145)
T d1hyea1          69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV-ITNPVD  126 (145)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE-CSSSHH
T ss_pred             HHHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE-EcCchH
Confidence            77899999999985  211            1234455556777775 44443 344433

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.91  E-value=2e-09  Score=80.96  Aligned_cols=120  Identities=14%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCce-EEecCcccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL-RCTSNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~~   82 (297)
                      +||+|||+|.+|+.+|..++..|+  ++.++|+++++++.....        .....       ...... ....+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D--------l~~~~-------~~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD--------INHGL-------PFMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH--------HTTSC-------CCTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee--------eccCc-------ccCCCeeEeeCcHHHh
Confidence            589999999999999999999887  899999999865432111        11111       111122 234567789


Q ss_pred             cCCcEEEEecc--cC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407           83 HSADIIVEAIV--ES------------EDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM  141 (297)
Q Consensus        83 ~~aD~Vi~~v~--e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~  141 (297)
                      ++||+|+.+..  ..            ..+.+++...+.++.++. +++.-|....+  ..+.+.... +.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            99999998742  11            123344455577776544 44433444333  334444333 3577764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=5.6e-09  Score=79.74  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (297)
                      .||+|||+|.+|..+|..|+..|+  ++.++|++++.++.....+.+.       ...      .....+...+++++++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~-------~~~------~~~~~~~~~~d~~~~~   86 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG-------SLF------LSTPKIVFGKDYNVSA   86 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT-------TTT------CSCCEEEEESSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc-------chh------cCCCeEEeccchhhhc
Confidence            589999999999999999999887  8999999988765443332211       000      0112344567888899


Q ss_pred             CCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEE
Q 022407           84 SADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIG  140 (297)
Q Consensus        84 ~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g  140 (297)
                      +||+||.+...              +..+.+++...+.++.+ +.+++.-|..+++  ..+.+..+. +.|++|
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            99999987521              12233344444666654 5555545554443  233333332 245554

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=7.3e-08  Score=74.56  Aligned_cols=76  Identities=22%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             CcEEEEECCChhHHHHHH--HHHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMGSGIAQ--LGVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~--~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .+||+|||+|..|...+.  .++.    .+.++.++|+++++++.....+++....+   +         ...++..++|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~i~~~td   69 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---G---------ADLKFEKTMN   69 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---T---------CCCEEEEESC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc---C---------CCeEEEEeCC
Confidence            369999999999987543  2333    25699999999998876555544443221   1         1234666777


Q ss_pred             ccc-ccCCcEEEEec
Q 022407           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      .++ +++||+||.++
T Consensus        70 ~~eaL~dad~Vv~~~   84 (171)
T d1obba1          70 LDDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             hhhcccCCCeEeeec
Confidence            766 89999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=2.8e-08  Score=73.77  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--cc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--LH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~   83 (297)
                      +++.|+|+|.+|..+|..|.+.|++|+++|.++++++.+           .+.|..      ......+-.+.++.  +.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-----------~~~~~~------~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-----------ASYATH------AVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-----------TTTCSE------EEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-----------HHhCCc------ceeeecccchhhhccCCc
Confidence            478999999999999999999999999999999988765           222210      00000000011122  67


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      +||.||.+++++... ..+...+.+..+...+++..
T Consensus        64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEEC
T ss_pred             cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEeec
Confidence            899999999877643 22333444555545555543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.62  E-value=3.1e-07  Score=68.46  Aligned_cols=120  Identities=23%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             cEEEEEC-CChhHHHHHHHHHHCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGVMDGL--DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .||+||| +|.+|..+|..+...|+  ++.++|++.  +..+.....+.+..    ..         ....++ .+.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~----~~---------~~~~~i-~~~~~~   66 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AY---------DSNTRV-RQGGYE   66 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TT---------TCCCEE-EECCGG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc----cc---------cCCceE-eeCCHH
Confidence            4899999 69999999999999887  799999753  22222211222211    00         011122 356788


Q ss_pred             cccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEE
Q 022407           81 DLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIG  140 (297)
Q Consensus        81 ~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g  140 (297)
                      ++++||+|+.+.-  .            +..+.+++...+.++.+ +.+++.-|..+++  ..+.+.... +.|++|
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtNPvDvmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVDLLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHHHHHHHHHHHSSSCGGGEEE
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecChHHHHHHHHHHHHCcCcccccC
Confidence            8999999998752  1            12234445555666665 4455444554443  233333332 245554

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.60  E-value=3.5e-08  Score=77.72  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=39.9

Q ss_pred             cEEEEE-CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 022407            6 KVMGVV-GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         6 ~~V~ii-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      |||+|| |+|.||+++|..|+++||+|++|+|++++++.+.+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 78999999999999999999999999999888766554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=6.8e-07  Score=68.33  Aligned_cols=73  Identities=11%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             cEEEEECCChhHHHHHHH-HHH-C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQL-GVM-D----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~-l~~-~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      +||+|||+|..|.+.+.. ++. .    +.++.++|+++++++.... +.+.   ....           ...+..+++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~~---~~~~-----------~~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKR---LVKD-----------RFKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHH---HHTT-----------SSEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHHh---hhcc-----------CceEEEecCc
Confidence            589999999999888865 322 2    4589999999998764322 1111   1111           1224455554


Q ss_pred             c-cccCCcEEEEecc
Q 022407           80 K-DLHSADIIVEAIV   93 (297)
Q Consensus        80 ~-~~~~aD~Vi~~v~   93 (297)
                      . ++++||+||.+.-
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence            4 4999999999763

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.53  E-value=1.1e-07  Score=71.34  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCC-c-eEEecC-c
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPR-R-LRCTSN-L   79 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-i~~~~~-~   79 (297)
                      .||+|||+ |.+|+.+|..++..|+  ++.++|+++.+.+..        +  .....       .... + ....++ +
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--------D--l~~~~-------~~~~~~~~~~~~~~~   63 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--------D--LSHIE-------TRATVKGYLGPEQLP   63 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--------H--HTTSS-------SSCEEEEEESGGGHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--------H--Hhhhh-------hhcCCCeEEcCCChH
Confidence            48999996 9999999999999887  799999987543321        1  11111       1111 1 111223 3


Q ss_pred             ccccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           80 KDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        80 ~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++++||+||.+..  .            +..+.+++..++.++.+ +++++..|..++
T Consensus        64 ~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvD  121 (144)
T d1mlda1          64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVN  121 (144)
T ss_dssp             HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHH
T ss_pred             HHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchh
Confidence            45899999998752  1            22345566667778855 555554555554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.53  E-value=1e-06  Score=64.91  Aligned_cols=91  Identities=21%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC------c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      |+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+.          .+.           . .+..|      +
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~-----------~-vi~Gd~~~~~~l   58 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA-----------L-VINGDCTKIKTL   58 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS-----------E-EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh-----------h-hccCcccchhhh
Confidence            589999999999999999999999999999999988765221          111           0 12212      1


Q ss_pred             c--cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           80 K--DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        80 ~--~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .  .++++|.++.+.+++..  ..+...+.+......+|+...
T Consensus        59 ~~~~i~~a~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~~~   99 (132)
T d1lssa_          59 EDAGIEDADMYIAVTGKEEV--NLMSSLLAKSYGINKTIARIS   99 (132)
T ss_dssp             HHTTTTTCSEEEECCSCHHH--HHHHHHHHHHTTCCCEEEECS
T ss_pred             hhcChhhhhhhcccCCcHHH--HHHHHHHHHHcCCceEEEEec
Confidence            1  26789999988876542  223333444455556665433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.51  E-value=1.1e-08  Score=80.04  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|..+|..+..-|.+|..||+++..                  +.            ....+++++ ++.
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~~------------~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------GP------------WRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------SS------------SCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------------------cc------------eeeeechhhhhhc
Confidence            68999999999999999999999999999987531                  10            123456776 899


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCC-CCeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~-~~~~~g~h~~  144 (297)
                      ||+|+.++|-..+.+.-+-.+.-+.++++++++..+-+  +..+.+.+.+.. .....++..+
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence            99999999987664433334555677889988843332  334566666542 2334455543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=1.7e-06  Score=66.18  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             CcEEEEECCChhHHHHHHH-HHH--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            5 MKVMGVVGSGQMGSGIAQL-GVM--D---GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~-l~~--~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      ..||+|||+|..|.+.+.. +..  .   +-++.++|+++++++.....+++....   .+         ...++..++|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~d   70 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE---KA---------PDIEFAATTD   70 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH---HC---------TTSEEEEESC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH---hC---------CCcceEecCC
Confidence            3589999999998775543 332  2   238999999999877544433333211   11         1234566777


Q ss_pred             ccc-ccCCcEEEEec
Q 022407           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      ..+ +++||+||.+.
T Consensus        71 ~~eal~~AD~Vvita   85 (167)
T d1u8xx1          71 PEEAFTDVDFVMAHI   85 (167)
T ss_dssp             HHHHHSSCSEEEECC
T ss_pred             hhhccCCCCEEEECC
Confidence            655 89999999986

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.44  E-value=1.7e-06  Score=66.56  Aligned_cols=122  Identities=18%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             cEEEEECCChhHHHH--HHHHHHC----CCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGSGQMGSGI--AQLGVMD----GLDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~G~mG~~i--A~~l~~~----G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +||+|||+|..|.+.  +..+...    +-++.++|++++.  ++..-......+   .+.+         ..-++..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~---~~~~---------~~~~~~~~t   69 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMV---EKAG---------VPIEIHLTL   69 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHH---HHTT---------CCCEEEEES
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHH---HhcC---------CCceeeecC
Confidence            589999999887543  3333332    2389999998864  222211111111   1111         123345666


Q ss_pred             Cccc-ccCCcEEEEecccC----------------------------------HHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           78 NLKD-LHSADIIVEAIVES----------------------------------EDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        78 ~~~~-~~~aD~Vi~~v~e~----------------------------------~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      |..+ +++||+||.+..-.                                  ..+.+++.+++.++++ +++++.-|..
T Consensus        70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p-da~~i~vtNP  148 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLINFTNP  148 (169)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSS
T ss_pred             CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC-CeEEEEeCCh
Confidence            6544 89999999987421                                  1224556677888864 5555544544


Q ss_pred             ccH-HH-HhhhcCCCCeEEEe
Q 022407          123 ISI-TR-LASATSRPCQVIGM  141 (297)
Q Consensus       123 ~~~-~~-l~~~~~~~~~~~g~  141 (297)
                      .++ .. +.+.. .+.+++|+
T Consensus       149 vdv~t~~~~k~~-p~~kviGl  168 (169)
T d1s6ya1         149 AGMVTEAVLRYT-KQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHHHC-CCCCEEEC
T ss_pred             HHHHHHHHHHHC-CCCCEEee
Confidence            443 33 33332 24577764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=7.8e-07  Score=66.55  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             cEEEEEC-CChhHHHHHHHHH-HC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVG-SGQMGSGIAQLGV-MD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG-~G~mG~~iA~~l~-~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |||+||| +|.+|+.+|..|+ +.  +.++.++|..+. .+...-.        .......     .....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~D--------l~h~~~~-----~~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVD--------LSHIPTA-----VKIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHH--------HHTSCSS-----CEEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHH--------HHCCccc-----cCCcEEEcCCCccc
Confidence            5899999 5999999999875 43  469999998753 2221111        1111100     00111222445667


Q ss_pred             ccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      +++||+||.+.-  .            +..+.+++..++.++.++.. ++.-|...+
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~ai-vivvtNPvD  122 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITNPVN  122 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSE-EEECSSSHH
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCCch
Confidence            899999998762  1            12345556667888876554 443455444

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.41  E-value=9.8e-08  Score=75.45  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=75.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+.......             ..+              ....++++ ++.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~--------------~~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG--------------YYVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT--------------CBCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce--------------eeeccccccccc
Confidence            68999999999999999999999999999987543211             111              12345666 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+.+.-+-.+.-+.++++++++ |++-   +.-..+.+.+... -.-.++..|.
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence            999999999766544333344456678888887 5542   2335666665432 2334455443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.39  E-value=1.8e-07  Score=72.52  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=37.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .++|.|||+|.||..+|..|++.||+|+++||+.++++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            3799999999999999999999999999999999988775

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.38  E-value=7.7e-08  Score=75.85  Aligned_cols=113  Identities=22%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|||||+|.+|+.+|..+..-|.+|..||+....-...            ..+             +...+++++ ++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~~~-------------~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------ALG-------------LQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------HHT-------------CEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------hhc-------------cccccchhhcccc
Confidence            689999999999999999999999999999865421110            111             234567777 799


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~  144 (297)
                      ||+|+.++|-..+.+.-+-.+.-+.++++++++ |++-   +.-+.+.+.+... -...++..+
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~~~i~~a~lDV~  167 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALKEGRIRGAALDVH  167 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence            999999998766543333344556788898888 5542   2335666666432 223444443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.33  E-value=1.4e-07  Score=74.16  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+.+|..+..-|.+|..||+........           ...+             .....++++ ++.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----------~~~~-------------~~~~~~l~~ll~~  103 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-----------ASYQ-------------ATFHDSLDSLLSV  103 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-----------HHHT-------------CEECSSHHHHHHH
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccccccchh-----------hccc-------------ccccCCHHHHHhh
Confidence            789999999999999999999999999999865432221           0111             134566766 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---cHHHHhhhcCCC-CeEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-+.++++++++ |++-=   .-+.+.+.+... ....++..|.
T Consensus       104 sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~~  167 (191)
T d1gdha1         104 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVFA  167 (191)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             CCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECCC
Confidence            999999998876544333345556788999888 55532   235666666432 2334555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.31  E-value=4.4e-07  Score=71.23  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|..+|..+..-|.+|..||+........           .+.+             +....++++ ++.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----------~~~~-------------~~~~~~l~~~l~~  100 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-----------KELN-------------LTWHATREDMYPV  100 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-----------HHHT-------------CEECSSHHHHGGG
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeecccccccc-----------cccc-------------ccccCCHHHHHHh
Confidence            689999999999999999999999999999864322111           1111             235566666 899


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCCC-eEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRPC-QVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~~-~~~g~h~~  144 (297)
                      ||+|+.++|-..+-+.-+-.+.-+.++++++++ |++-   +..+.+.+.+.... .-.++..|
T Consensus       101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~~g~i~ga~lDV~  163 (188)
T d2naca1         101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALESGRLAGYAGDVW  163 (188)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHTTSEEEEEESCC
T ss_pred             ccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHhCCCceeEEEeCC
Confidence            999999998776544334445566788898888 5553   33366777664432 22445444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=4.1e-06  Score=63.27  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=64.0

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC   75 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~   75 (297)
                      +.+||+|||+ |.+|..+|..|+..+.       ++.++|.++.....-  .    ++.-......      .....+..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~--~----l~~~~~~~~~------~~~~~~~~   69 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLD--G----VLMELQDCAL------PLLKDVIA   69 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHH--H----HHHHHHHTCC------TTEEEEEE
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhh--h----hhhhhccccc------cccccccc
Confidence            3469999996 9999999999986543       577888765432211  1    1100111111      11223444


Q ss_pred             ecCc-ccccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           76 TSNL-KDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        76 ~~~~-~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      .++. ++++++|+||.+..  .            +..+.+.+..++.++++.+.+++.-|..+.+
T Consensus        70 ~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             CcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence            4554 45999999998752  1            1234555666788888887744333334443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.6e-06  Score=65.46  Aligned_cols=97  Identities=25%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|+|+|.|.+|+++|..+...|-+|.++|++|-+.-++           .-.|.             .+....+.+..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-----------~~dG~-------------~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-----------AMEGY-------------EVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------HHTTC-------------EECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-----------hcCce-------------Eeeehhhhhhhc
Confidence            689999999999999999999999999999999653332           22232             333323348889


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC---CccHHHHhh
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTS---SISITRLAS  130 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts---~~~~~~l~~  130 (297)
                      |++|.+....-.+..+-|    +.+++++|++..++   -+++..+.+
T Consensus        81 divvtaTGn~~vI~~eh~----~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          81 NIFVTTTGCIDIILGRHF----EQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             SEEEECSSCSCSBCHHHH----TTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             cEEEecCCCccchhHHHH----HhccCCeEEEEeccccceecHHHHhh
Confidence            999988765332332222    45788888884433   233445544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=1.2e-06  Score=68.40  Aligned_cols=113  Identities=26%  Similarity=0.277  Sum_probs=77.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|+|+|.+|..+|..+..-|.+|..||+........            ..+             +. ..++++ ++.
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------~~~-------------~~-~~~l~ell~~   98 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA------------QLG-------------IE-LLSLDDLLAR   98 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH------------HHT-------------CE-ECCHHHHHHH
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh------------hcC-------------ce-eccHHHHHhh
Confidence            689999999999999999999999999999876543221            111             12 345666 889


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCCC-eEEEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRPC-QVIGMHFMN  145 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~~-~~~g~h~~~  145 (297)
                      ||+|+.++|-..+-+.-+-++.-+.++++++++ |++-   +.-+.+.+.+.... ...++..|.
T Consensus        99 sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~~~~i~~a~lDV~~  162 (184)
T d1ygya1          99 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAITGGHVRAAGLDVFA  162 (184)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred             CCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHhcCcEeEEEEeCCC
Confidence            999999999777644333345556788898888 5542   33366777665432 335555554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.22  E-value=6.5e-07  Score=68.19  Aligned_cols=82  Identities=23%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (297)
                      .++|.|||+|.||..++..|...|. +|++++|+.++++.+.+.          .+.           .....+++. .+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~----------~~~-----------~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD----------LGG-----------EAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH----------HTC-----------EECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHh----------hhc-----------ccccchhHHHHh
Confidence            3689999999999999999999998 699999999887665221          111           011122333 37


Q ss_pred             cCCcEEEEecccCH-HHHHHHHHHHH
Q 022407           83 HSADIIVEAIVESE-DVKKKLFSELD  107 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~-~~k~~~~~~l~  107 (297)
                      .++|+||.|++.+. -+..+.++...
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~  108 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREAL  108 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHH
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHH
Confidence            88999999986543 22344444433

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.19  E-value=5.5e-07  Score=71.21  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|+.+|..+..-|.+|..||+.....                  .         ...+. ..++++ ++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~------------------~---------~~~~~-~~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG------------------D---------HPDFD-YVSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS------------------C---------CTTCE-ECCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchh------------------h---------hcchh-HHHHHHHHHh
Confidence            689999999999999999999999999999864310                  0         01122 235666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSR  134 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~  134 (297)
                      ||+|+.++|-..+-+.-+-.+.-+.++++++++ |++-   +.-+++.+.+..
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~~  149 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLKS  149 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHHT
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHhc
Confidence            999999998776644333344556678888887 5542   233567666643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.8e-06  Score=67.58  Aligned_cols=110  Identities=21%  Similarity=0.337  Sum_probs=75.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      ++|+|||+|.+|..+|..+..-|.+|..||+......                            .......++++ ++.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~   96 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLNM   96 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHHH
T ss_pred             eEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHhh
Confidence            6899999999999999999999999999998643100                            11123456666 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCC-CCeEEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSR-PCQVIGMHFM  144 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~-~~~~~g~h~~  144 (297)
                      ||+|+.++|-..+-+.-+=++.-+.++++++++ |++ +  +..+++.+.+.. .....++..+
T Consensus        97 sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1          97 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI-NASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-ECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             ccceeecccCCcchhhhccHHHHhhCCCCCEEE-EcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            999999998776544333345556778888888 444 2  334667776643 2333444444

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=4.8e-06  Score=63.01  Aligned_cols=88  Identities=22%  Similarity=0.260  Sum_probs=67.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|+|||.|..|.+-|.+|..+|++|++--|...+ .+++           .+.|.             .+.+-.+.++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~Gf-------------~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHGL-------------KVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTTC-------------EEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhcc-------------ccccHHHHhhh
Confidence            68999999999999999999999999988776542 2332           34453             34443445899


Q ss_pred             CcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeec
Q 022407           85 ADIIVEAIVESEDVKKKLFS-ELDKITKASAILASN  119 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~  119 (297)
                      +|+|...+|+..  ..+++. ++.+.++++..+...
T Consensus        73 aDiim~L~PD~~--q~~vy~~~I~p~lk~g~~L~Fa  106 (182)
T d1np3a2          73 ADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA  106 (182)
T ss_dssp             CSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES
T ss_pred             cCeeeeecchHH--HHHHHHHhhhhhcCCCcEEEEe
Confidence            999999999544  456775 699999998877643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=7.2e-06  Score=61.87  Aligned_cols=110  Identities=14%  Similarity=0.092  Sum_probs=62.6

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccC
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAP   70 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   70 (297)
                      |.+ .+||+|||+ |.+|+.+|..|+..++       ...+++.+..  ..+....        .......      ...
T Consensus         1 m~~-p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~------~~~   65 (154)
T d1y7ta1           1 MKA-PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVM--------ELEDCAF------PLL   65 (154)
T ss_dssp             CCC-CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH--------HHHTTTC------TTE
T ss_pred             CCC-CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchh--------hhhcccc------ccc
Confidence            443 369999997 9999999999998654       2345544333  2222110        0111110      111


Q ss_pred             CceEEecC-cccccCCcEEEEec--cc------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           71 RRLRCTSN-LKDLHSADIIVEAI--VE------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        71 ~~i~~~~~-~~~~~~aD~Vi~~v--~e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      ..+...++ .+++++||+||.+.  |.            +....+.+...+.++++++++++..|..+..
T Consensus        66 ~~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          66 AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            23334443 44599999999876  21            1223445555677888888766544544444

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=98.01  E-value=9.4e-05  Score=56.65  Aligned_cols=108  Identities=6%  Similarity=0.053  Sum_probs=64.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      .||+|+|+ |.+|.+++..|+....       ++.++|++...-. + +.+...    ......      .....+..++
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~-l-~g~~md----l~d~a~------~~~~~~~~~~   92 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA-L-EGVAME----LEDSLY------PLLREVSIGI   92 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH-H-HHHHHH----HHTTTC------TTEEEEEEES
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch-h-cchhhh----hccccc------ccccCccccc
Confidence            58999997 9999999999987532       6778887664221 1 111110    111111      1123344455


Q ss_pred             C-cccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           78 N-LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        78 ~-~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                      + .++++++|+||.+..-              +..+.+.+...+.++++++++|+..+..+..
T Consensus        93 ~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          93 DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence            5 4459999999987521              1223445556688888888765544444444

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.93  E-value=1.1e-05  Score=60.60  Aligned_cols=90  Identities=20%  Similarity=0.312  Sum_probs=63.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      +++.|+|.|..|+++|..+...|-+|++++++|-+.-++           .-.|             +++.+-.+.++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA-----------~mdG-------------f~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-----------VMEG-------------FNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-----------HTTT-------------CEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH-----------HhcC-------------CccCchhHccccC
Confidence            689999999999999999999999999999999543222           1122             2443333448999


Q ss_pred             cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      |++|.+......+..+-|    +.+++++|++ |.....
T Consensus        80 Di~vTaTGn~~vI~~~h~----~~MKdgaIl~-N~GHfd  113 (163)
T d1v8ba1          80 DFFITCTGNVDVIKLEHL----LKMKNNAVVG-NIGHFD  113 (163)
T ss_dssp             SEEEECCSSSSSBCHHHH----TTCCTTCEEE-ECSSTT
T ss_pred             cEEEEcCCCCccccHHHH----HHhhCCeEEE-eccccc
Confidence            999999876443222222    4578888887 444443

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.92  E-value=1.6e-05  Score=62.22  Aligned_cols=94  Identities=17%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG------LDVWLVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G------~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      +++|+|||.|..|.+-|.+|..+|      .+|++-=|.. ...+++           .+.|.-.        ....+.+
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA-----------~~dGf~v--------~~~~v~~  104 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEA-----------RAAGFSE--------ENGTLGD  104 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCG--------GGTCEEE
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHH-----------HHcCCcc--------CCCcccC
Confidence            479999999999999999999955      5576554332 222333           3444310        0111333


Q ss_pred             CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           78 NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        78 ~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      -.+.++.||+|+..+|+..  ..+++.++.+.++++..+...
T Consensus       105 v~EAv~~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         105 MWETISGSDLVLLLISDSA--QADNYEKVFSHMKPNSILGLS  144 (226)
T ss_dssp             HHHHHHTCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEES
T ss_pred             HHHHHhhCCEEEEecchHH--HHHHHHHHHHhcCCCceeeec
Confidence            3345889999999999755  456788999999998877643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=2.7e-05  Score=53.51  Aligned_cols=70  Identities=17%  Similarity=0.352  Sum_probs=48.6

Q ss_pred             CCCCcEEEEECCChhH-HHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            2 EEKMKVMGVVGSGQMG-SGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         2 ~~~~~~V~iiG~G~mG-~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +...++|-|||.|-.| +++|..|.+.||+|+.+|.......+          .+.+.|.           .+....+.+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~----------~L~~~Gi-----------~v~~g~~~~   63 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQ----------RLAQAGA-----------KIYIGHAEE   63 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHH----------HHHHTTC-----------EEEESCCGG
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhh----------HHHHCCC-----------eEEECCccc
Confidence            4556899999999999 66799999999999999987543211          2245553           122223334


Q ss_pred             cccCCcEEEEec
Q 022407           81 DLHSADIIVEAI   92 (297)
Q Consensus        81 ~~~~aD~Vi~~v   92 (297)
                      .+.++|+||.+-
T Consensus        64 ~i~~~d~vV~S~   75 (96)
T d1p3da1          64 HIEGASVVVVSS   75 (96)
T ss_dssp             GGTTCSEEEECT
T ss_pred             cCCCCCEEEECC
Confidence            478899988743

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.88  E-value=6.7e-06  Score=66.73  Aligned_cols=37  Identities=30%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |+...+||.|||+|.+|.+.|..|+++|++|+++|++
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            5666789999999999999999999999999999985

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=3e-05  Score=59.31  Aligned_cols=40  Identities=10%  Similarity=0.053  Sum_probs=37.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      ++|.|+|+|-.+++++..|.+.|.+|++++|+.++.+.+.
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            6899999999999999999999999999999999887663

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=3.3e-05  Score=58.94  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=36.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+|+|-++++++..|.+.|. +|++++|+.++.+.+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            3689999999999999999999997 799999999987765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=7.1e-05  Score=54.26  Aligned_cols=28  Identities=32%  Similarity=0.512  Sum_probs=24.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWL   33 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~   33 (297)
                      |||+|+|+ |.||+.++..+.+.|+++..
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence            58999997 99999999999999998763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.79  E-value=1.8e-05  Score=57.08  Aligned_cols=56  Identities=23%  Similarity=0.447  Sum_probs=41.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHH-HHHHHHHHHHHHH-HHcCC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALV-RATKSISSSIQKF-VSKGQ   60 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~~~~~~-~~~g~   60 (297)
                      .++|+|||+|.+|.-+|..|++.|++|+++++++.-+. ..-+.+.+.+.+. .++|.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV   87 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGV   87 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCc
Confidence            47999999999999999999999999999999876543 2233444444333 34453

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=2.9e-05  Score=59.49  Aligned_cols=72  Identities=11%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~   84 (297)
                      ++|.|+|+|-++++++..|.+.+-+|++++|+.++++...+.+.       ..+            .+.. ..+.....+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            68999999999999999999988999999999988777644322       111            1122 222223678


Q ss_pred             CcEEEEecccCH
Q 022407           85 ADIIVEAIVESE   96 (297)
Q Consensus        85 aD~Vi~~v~e~~   96 (297)
                      +|+||-|+|-..
T Consensus        80 ~diiIN~tp~g~   91 (171)
T d1p77a1          80 YDLVINATSAGL   91 (171)
T ss_dssp             CSEEEECCCC--
T ss_pred             cceeeecccccc
Confidence            999999998554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=0.00053  Score=52.55  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=34.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a   69 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA   69 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccccccccc
Confidence            689999999999988888888897 799999999988776

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.7e-06  Score=64.98  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .++||.|+|+ |.+|+.++..|+++||+|++++|+++++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            3579999996 9999999999999999999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.76  E-value=1.2e-05  Score=57.70  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.-+|..|+..|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            57999999999999999999999999999998654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=2.1e-05  Score=56.17  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=33.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .+||.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            479999999999999999999999999999997643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=0.0001  Score=49.72  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             cEEEEECCChhHH-HHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQMGS-GIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      +||-|||-|-+|. ++|..|.+.|++|...|+.+...-.          ++.+.|.-           +....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi~-----------i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGIP-----------IFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTCC-----------EESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCCe-----------EEeeecccccCC
Confidence            5899999999887 7899999999999999998643221          23555631           222334445888


Q ss_pred             CcEEEEe
Q 022407           85 ADIIVEA   91 (297)
Q Consensus        85 aD~Vi~~   91 (297)
                      +|+||.+
T Consensus        61 ~d~vV~S   67 (89)
T d1j6ua1          61 PDLVIKT   67 (89)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999975

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.64  E-value=9.7e-05  Score=57.01  Aligned_cols=74  Identities=11%  Similarity=0.176  Sum_probs=53.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||||||+|.||...+..+... +++|+ ++|+++++.+...+          +.+.         ....++.+|+++ +
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~~---------~~~~~~~~~~~~ll   62 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY---------PESTKIHGSYESLL   62 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC---------CTTCEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------cccc---------ccceeecCcHHHhh
Confidence            4899999999999999888775 66776 77999987665421          1121         122346677776 3


Q ss_pred             --cCCcEEEEecccCHHH
Q 022407           83 --HSADIIVEAIVESEDV   98 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~~   98 (297)
                        .+.|+|+.|.|...+.
T Consensus        63 ~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1          63 EDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             HCTTCCEEEECCCGGGHH
T ss_pred             hccccceeeecccchhhc
Confidence              4689999999987754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=4e-05  Score=58.13  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||+|||+|.||.. ....+... ++++. ++|+++++.+...+.          .+             +...++.++ 
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR-------------IPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT-------------CCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc----------cc-------------ccccccchhh
Confidence            58999999999986 45555544 66655 889998876654221          11             124555555 


Q ss_pred             ccCCcEEEEecccCHHH
Q 022407           82 LHSADIIVEAIVESEDV   98 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~   98 (297)
                      +++.|+|+.|.|.+.+.
T Consensus        59 ~~~~D~V~I~tp~~~h~   75 (164)
T d1tlta1          59 AASCDAVFVHSSTASHF   75 (164)
T ss_dssp             HTTCSEEEECSCTTHHH
T ss_pred             hhhcccccccccchhcc
Confidence            67899999999987653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0012  Score=49.86  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a   67 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA   67 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH
Confidence            689999999999988888888898 799999999998876

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.62  E-value=0.0003  Score=53.20  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=48.9

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      +||+|||+|.||.. ....+.+. +.++.++|+++++.+...+.          .+.            ....+|.++ +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV------------SATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC------------CCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------ccc------------ccccccHHHhc
Confidence            58999999999976 45556554 56888999999887765221          111            123455555 3


Q ss_pred             -cCCcEEEEecccCHHH
Q 022407           83 -HSADIIVEAIVESEDV   98 (297)
Q Consensus        83 -~~aD~Vi~~v~e~~~~   98 (297)
                       .+.|+|+.|+|...+.
T Consensus        60 ~~~iD~V~I~tp~~~H~   76 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVHS   76 (167)
T ss_dssp             GGCCSEEEECSCGGGHH
T ss_pred             ccccceecccccccccc
Confidence             3679999999987753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=0.00022  Score=50.29  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe---cCcccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT---SNLKDL   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~~~   82 (297)
                      ++|.|||+|..|..-|..|+++|.+|++++.....-..          .+.+.+.            +++.   -+.+++
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~------------i~~~~~~~~~~dl   70 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGM------------LTLVEGPFDETLL   70 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTS------------CEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCC------------ceeeccCCCHHHh
Confidence            79999999999999999999999999999876543211          1122222            2222   223458


Q ss_pred             cCCcEEEEecccCHHHHHHHHHH
Q 022407           83 HSADIIVEAIVESEDVKKKLFSE  105 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~  105 (297)
                      .++++|+.+.. +.++...+...
T Consensus        71 ~~~~lv~~at~-d~~~n~~i~~~   92 (113)
T d1pjqa1          71 DSCWLAIAATD-DDTVNQRVSDA   92 (113)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHH
T ss_pred             CCCcEEeecCC-CHHHHHHHHHH
Confidence            89999998765 44444455443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00015  Score=54.69  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ...||+|+|+ |.||+.++..+.+. ++++. .+|+.....-.            ...|.+.    ......+...++++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~----~~~~~~~~~~~~~~   66 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELA----GAGKTGVTVQSSLD   66 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSS----SSSCCSCCEESCST
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhh----ccccCCceeeccHH
Confidence            3468999996 99999999987764 66654 55654321000            0001110    01112245667777


Q ss_pred             c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHH
Q 022407           81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRL  128 (297)
Q Consensus        81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l  128 (297)
                      . ...+|+||+-..  ++   .....++.+.+.+.-++..|++++.+++
T Consensus        67 ~~~~~~DViIDFs~--p~---~~~~~~~~a~~~~~~~ViGTTG~~~~~~  110 (162)
T d1diha1          67 AVKDDFDVFIDFTR--PE---GTLNHLAFCRQHGKGMVIGTTGFDEAGK  110 (162)
T ss_dssp             TTTTSCSEEEECSC--HH---HHHHHHHHHHHTTCEEEECCCCCCHHHH
T ss_pred             HHhcccceEEEecc--HH---HHHHHHHHHHhccceeEEecCCCcHHHH
Confidence            6 688999998653  22   2333344445556667777888876543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.59  E-value=5.8e-05  Score=58.04  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA   85 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a   85 (297)
                      ++|.|+|+|-++++++..|.+.| +|++++|+.++.+.+.+.+...+....             ...+...+-......+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~   84 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------------GEEVKFSGLDVDLDGV   84 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------------HHHEEEECTTCCCTTC
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------------hhhhhhhhhhhccchh
Confidence            68999999999999999998877 999999999998887666554321100             0112232222236788


Q ss_pred             cEEEEecccC
Q 022407           86 DIIVEAIVES   95 (297)
Q Consensus        86 D~Vi~~v~e~   95 (297)
                      |++|.|.|-.
T Consensus        85 dliIn~tp~g   94 (177)
T d1nvta1          85 DIIINATPIG   94 (177)
T ss_dssp             CEEEECSCTT
T ss_pred             hhhccCCccc
Confidence            9999988743

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.58  E-value=0.0015  Score=49.15  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=36.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a   66 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA   66 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH
Confidence            3689999999999999888888999999999999998876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.55  E-value=0.00019  Score=56.10  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=36.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|.|.|.+|..+|..|.+.|.+|+++|.+++.++..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            689999999999999999999999999999999877654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=3.2e-05  Score=52.88  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +||+|+|+|..|.+.|..|.+.|.+|+++|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            6899999999999999999999999999998653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.49  E-value=5.1e-05  Score=57.97  Aligned_cols=136  Identities=11%  Similarity=0.117  Sum_probs=78.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   82 (297)
                      .||+|||+|.||+..+..+.+. +++++ ++|++++...                           .......++.+. .
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------------------------~~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------------------------KTPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------------------------SSCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------------------------ccccccchhhhhhc
Confidence            5899999999999998888764 56655 7787754211                           012234445554 6


Q ss_pred             cCCcEEEEecccCHHHHHHHHHHHHhhccCCe-EEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCC
Q 022407           83 HSADIIVEAIVESEDVKKKLFSELDKITKASA-ILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT  161 (297)
Q Consensus        83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~  161 (297)
                      .+.|+|++|.|...+.  ++.   .+.+..+. +|.+                          .+|.           ..
T Consensus        57 ~~~D~Vvi~tp~~~h~--~~a---~~aL~aG~~vv~~--------------------------~~~~-----------~~   94 (170)
T d1f06a1          57 DDVDVLFLCMGSATDI--PEQ---APKFAQFACTVDT--------------------------YDNH-----------RD   94 (170)
T ss_dssp             TTCSEEEECSCTTTHH--HHH---HHHHTTTSEEECC--------------------------CCCG-----------GG
T ss_pred             cccceEEEeCCCcccH--HHH---HHHHHCCCcEEEe--------------------------cCcc-----------cc
Confidence            7899999999877642  111   12222221 1210                          1221           13


Q ss_pred             hHHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCC
Q 022407          162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVA  211 (297)
Q Consensus       162 ~~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~  211 (297)
                      +++..+.+..+.++-|+..++- +-.|+|...| ..+....+-++.+.|.+
T Consensus        95 ~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~-~~~~~~~~~~~~~~G~i  144 (170)
T d1f06a1          95 IPRHRQVMNEAATAAGNVALVSTGRNPDFTASS-QIAFGRAAHRMKQQGQS  144 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHH-HHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHhcCceEEEeceeccchhHHH-HHHHHHHHHHHHhcCCC
Confidence            4666677777777766654432 2235655544 34555556677777643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.1e-05  Score=55.15  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      ..+++.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            35799999999999999999999999999999876543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=6.1e-05  Score=53.68  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            4799999999999999999999999999999877543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.41  E-value=4.2e-05  Score=57.72  Aligned_cols=92  Identities=16%  Similarity=0.260  Sum_probs=61.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ec---Cccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TS---NLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~---~~~~   81 (297)
                      -||.|||+|..|..-+......|-+|+++|.+.++++.+.....        .             .+.. ..   .+++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--------~-------------~~~~~~~~~~~l~~   91 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--------S-------------RVELLYSNSAEIET   91 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------G-------------GSEEEECCHHHHHH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--------c-------------cceeehhhhhhHHH
Confidence            58999999999999999999999999999999998876532211        0             0111 11   2333


Q ss_pred             -ccCCcEEEEec--ccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           82 -LHSADIIVEAI--VESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        82 -~~~aD~Vi~~v--~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                       +++||+||-++  |....- .-+-++.-+..+++.+|+..
T Consensus        92 ~~~~aDivI~aalipG~~aP-~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1          92 AVAEADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             HHHTCSEEEECCCCTTSSCC-CCBCHHHHTTSCTTCEEEET
T ss_pred             hhccCcEEEEeeecCCcccC-eeecHHHHhhcCCCcEEEEe
Confidence             88999999987  222110 01123344567788877643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.40  E-value=0.0011  Score=49.82  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+|+|.+|...++.+...|.+|++.|+++++++.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence            3689999999999988888888899999999999988766

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=0.0011  Score=50.59  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=48.0

Q ss_pred             cEEEEECCChhHHH-HHHHHHHCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMDG--LDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~G--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      .||+|||+|.+|.. ....+.+.+  ++|. ++|+++++.+...+.          .+.            ....+++++
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------~~~------------~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------VGN------------PAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------HSS------------CEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------ccc------------cceeeeeec
Confidence            58999999999987 466666543  3555 889999877654221          111            135667766


Q ss_pred             -c--cCCcEEEEecccCHH
Q 022407           82 -L--HSADIIVEAIVESED   97 (297)
Q Consensus        82 -~--~~aD~Vi~~v~e~~~   97 (297)
                       +  .+.|+|+.|.|.+.+
T Consensus        62 ll~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH
T ss_pred             cccccccceeecccccccc
Confidence             3  468999999987765

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=8.3e-05  Score=57.21  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .+||+|||+|.-|..-|..|+++||+|++||.++.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            47999999999999999999999999999998753

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.35  E-value=0.00075  Score=50.45  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             CCCCCcEEEEECCChhHHHH-HHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            1 MEEKMKVMGVVGSGQMGSGI-AQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~i-A~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      |.++ .||||||+|.+|..+ ...+... ..++. +.+++++.....         ...+.|..            ...+
T Consensus         1 M~kk-irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~---------~a~~~~i~------------~~~~   58 (157)
T d1nvmb1           1 MNQK-LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLA---------RAQRMGVT------------TTYA   58 (157)
T ss_dssp             CCSC-EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHH---------HHHHTTCC------------EESS
T ss_pred             CCCC-cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchh---------hhhhcCCc------------cccc
Confidence            6654 599999999999864 4555444 34555 557776522111         00222321            1111


Q ss_pred             Ccc------cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           78 NLK------DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        78 ~~~------~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      +++      +..+.|+|+.++|...+......   .+..+.++.++.+|+.
T Consensus        59 ~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          59 GVEGLIKLPEFADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHHHHHSGGGGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             ceeeeeecccccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            111      24578999999997666544332   2334667777778773

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00033  Score=53.84  Aligned_cols=41  Identities=24%  Similarity=0.475  Sum_probs=36.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~   46 (297)
                      ++|.|+|+|-+|++++..|.+.|. ++++++|++++.+++..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            689999999999999999999987 79999999888777644

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.33  E-value=8.2e-05  Score=60.32  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.001  Score=50.13  Aligned_cols=40  Identities=23%  Similarity=0.322  Sum_probs=34.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a   67 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA   67 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh
Confidence            3689999999999987777767899999999999988776

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.29  E-value=0.001  Score=52.62  Aligned_cols=75  Identities=16%  Similarity=0.090  Sum_probs=49.6

Q ss_pred             cEEEEECCChhHHH-HHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSGQMGSG-IAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      -||+|||+|.||.. +...+... +.+|. ++|+++++++...+          +.| +..       ..+...+|+++ 
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~----------~~~-i~~-------~~~~~~~d~~el   95 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA----------EYG-VDP-------RKIYDYSNFDKI   95 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH----------HTT-CCG-------GGEECSSSGGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHH----------hhc-ccc-------ccccccCchhhh
Confidence            48999999999975 44555544 66766 88999998776521          112 111       11233466666 


Q ss_pred             c--cCCcEEEEecccCHHH
Q 022407           82 L--HSADIIVEAIVESEDV   98 (297)
Q Consensus        82 ~--~~aD~Vi~~v~e~~~~   98 (297)
                      +  .+.|+|+.|+|...+.
T Consensus        96 l~~~~iD~V~I~tp~~~H~  114 (221)
T d1h6da1          96 AKDPKIDAVYIILPNSLHA  114 (221)
T ss_dssp             GGCTTCCEEEECSCGGGHH
T ss_pred             cccccceeeeeccchhhhh
Confidence            4  3689999999987753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00078  Score=50.02  Aligned_cols=96  Identities=9%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC------c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN------L   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------~   79 (297)
                      .+|-|+|+|.+|..++..|.+.|++|+++|.+++......+.       ....|.           . ....|      +
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~-------~~~~~~-----------~-vi~Gd~~d~~~L   64 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ-------RLGDNA-----------D-VIPGDSNDSSVL   64 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH-------HHCTTC-----------E-EEESCTTSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHH-------hhcCCc-----------E-EEEccCcchHHH
Confidence            469999999999999999999999999999998754333111       111221           0 11111      1


Q ss_pred             cc--ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           80 KD--LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        80 ~~--~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      +.  +..||.||.+.+++.... .+...+.+..+.-.+++...+
T Consensus        65 ~~a~i~~a~~vi~~~~~d~~n~-~~~~~~r~~~~~~~iia~~~~  107 (153)
T d1id1a_          65 KKAGIDRCRAILALSDNDADNA-FVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             HHHTTTTCSEEEECSSCHHHHH-HHHHHHHHHTSSSCEEEECSS
T ss_pred             HHhccccCCEEEEccccHHHHH-HHHHHHHHhCCCCceEEEEcC
Confidence            22  678999999988765422 222234444444456664433

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.25  E-value=0.00011  Score=52.51  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=33.3

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ..++|.|||+|.+|.-+|..|++.|.+|+++.+++.-
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            3479999999999999999999999999999987653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.21  E-value=0.00027  Score=54.76  Aligned_cols=44  Identities=27%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      ++|.|.|+ |-+|..+|..|++.|.+|++.+|+.++++.+.+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            67888885 999999999999999999999999999887765544

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.20  E-value=0.00042  Score=52.86  Aligned_cols=39  Identities=21%  Similarity=0.188  Sum_probs=34.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a   68 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA   68 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH
Confidence            579999999999988888888896 799999999988776

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.20  E-value=0.00013  Score=56.30  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      -+||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4799999999999999999999999 5999998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00035  Score=51.62  Aligned_cols=95  Identities=19%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      +||||||+ |.+|.-+...|..+ .+   +++.+..+...                  |......  ..........+..
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------------------g~~~~~~--~~~~~~~~~~~~~   61 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------------------QAAPSFG--GTTGTLQDAFDLE   61 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------------------SBCCGGG--TCCCBCEETTCHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------------------ccccccc--CCceeeecccchh
Confidence            58999999 99999999876654 33   45556544321                  1100000  0001111122333


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      +.+++|++|.|+|.+..  +.+..++.+ ...++++++++|..
T Consensus        62 ~~~~~DivF~a~~~~~s--~~~~~~~~~-~g~~~~VID~Ss~f  101 (146)
T d1t4ba1          62 ALKALDIIVTCQGGDYT--NEIYPKLRE-SGWQGYWIDAASSL  101 (146)
T ss_dssp             HHHTCSEEEECSCHHHH--HHHHHHHHH-TTCCCEEEECSSTT
T ss_pred             hhhcCcEEEEecCchHH--HHhhHHHHh-cCCCeecccCCccc
Confidence            47899999999986553  334443333 22345777787753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00011  Score=48.06  Aligned_cols=35  Identities=40%  Similarity=0.663  Sum_probs=32.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++|+|+|.|..|+-++.....-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            47899999999999999999999999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00016  Score=52.04  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=32.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|..|.-+|..|+..|.+|+++++++.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            47999999999999999999999999999999754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.14  E-value=0.00075  Score=56.67  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             CCcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++...+..+.. .. .+|.+|++++++.+...+..+       ..+.            ....++.++
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~~------------~~~~~~~~a  184 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRGI------------SASVQPAEE  184 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTTC------------CEEECCHHH
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcCC------------ccccchhhh
Confidence            45789999999999999887664 33 389999999998877654332       1221            012333344


Q ss_pred             ccCCcEEEEecccCH
Q 022407           82 LHSADIIVEAIVESE   96 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~   96 (297)
                      +.+||+|+.|.+...
T Consensus       185 ~~~aDiV~taT~s~~  199 (320)
T d1omoa_         185 ASRCDVLVTTTPSRK  199 (320)
T ss_dssp             HTSSSEEEECCCCSS
T ss_pred             hccccEEEEeccCcc
Confidence            889999999887544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0003  Score=49.42  Aligned_cols=35  Identities=29%  Similarity=0.364  Sum_probs=32.6

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..||+|||+|.+|+-+|....+-|++|.++|.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            36899999999999999999999999999999876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.08  E-value=0.00031  Score=50.34  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=33.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      ..++|+|||+|.+|.-+|..|++.|++|+++++.+.-
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            3579999999999999999999999999999987643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.07  E-value=0.00017  Score=60.08  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+||+|||+|.-|...|..|+++|++|+++|.++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4799999999999999999999999999999764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.07  E-value=0.00047  Score=58.22  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ..++++|||+|.++..-+..+. ..+. +|.+||+++++.+++.++++       +..          --.+...++.++
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~----------g~~v~~~~s~~e  189 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYS----------GLTIRRASSVAE  189 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCT----------TCEEEECSSHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hcc----------CCCceecCCHHH
Confidence            3578999999999998887654 4454 79999999998877644321       110          123456777776


Q ss_pred             -ccCCcEEEEeccc
Q 022407           82 -LHSADIIVEAIVE   94 (297)
Q Consensus        82 -~~~aD~Vi~~v~e   94 (297)
                       +++||+|+.|.+.
T Consensus       190 av~~ADIi~t~Tas  203 (340)
T d1x7da_         190 AVKGVDIITTVTAD  203 (340)
T ss_dssp             HHTTCSEEEECCCC
T ss_pred             HHhcCCceeecccc
Confidence             8999999988854

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.07  E-value=0.00015  Score=59.40  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+|+|||+|.-|...|..|+++|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.05  E-value=0.0005  Score=52.40  Aligned_cols=40  Identities=18%  Similarity=0.069  Sum_probs=36.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      -+|.|||+|..|..-+.....-|-+|+++|.++++++++.
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            4899999999999888888899999999999999887763

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.05  E-value=0.00039  Score=49.72  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=32.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|.|||+|..|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            6899999999999999999999999999998765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.05  E-value=0.00012  Score=51.89  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=33.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .+++.|||+|..|.-+|..|++.|++|+++++.+.-+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            3799999999999999999999999999999876543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00033  Score=50.12  Aligned_cols=34  Identities=24%  Similarity=0.062  Sum_probs=31.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ..++++|||+|.+|.-+|..|++.|.+|+++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            3478999999999999999999999999999886

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.00  E-value=0.00023  Score=58.33  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||+|||+|.-|..-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.98  E-value=0.00048  Score=52.52  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a   69 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHH
Confidence            689999999999988888888897 688899999988776

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.98  E-value=0.0002  Score=51.46  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHH-HHHHcC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQ-KFVSKG   59 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~g   59 (297)
                      .+++.|||+|.+|.-+|..|++.|.+|+++.+++.-+...-..+...+. .+.++|
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhccc
Confidence            4799999999999999999999999999999877654333333333333 234444

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.97  E-value=0.00029  Score=59.12  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .+||+|||+|.-|...|..|++.|++|++++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4799999999999999999999999999999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=0.0061  Score=45.44  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+|+|.+|...+..+...|.+|++.+.++++++.+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            3689999999999988888888999999999999987765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.96  E-value=0.0003  Score=57.34  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -|.|||+|.+|.+.|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.0012  Score=49.80  Aligned_cols=39  Identities=31%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+|++.|.++++.+.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            689999999999888877778899999999999887655

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.92  E-value=0.0005  Score=52.50  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=35.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A   70 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH
Confidence            579999999999999999999985 799999999999877

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.89  E-value=0.0027  Score=46.52  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Ccc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLK   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~   80 (297)
                      +||+|||+ |..|.-+...|.+++|   ++..+..+..                  .|..    .......+...+ +.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------------------~Gk~----i~~~~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------------------AGQR----MGFAESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------------------TTCE----EEETTEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------------------CCcc----eeeccccchhccchhh
Confidence            68999999 9999999999987665   5666543322                  1110    011111122222 223


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ...++|++|.|+|....  .++..   +....+++++.+++..-
T Consensus        61 ~~~~~d~vf~a~p~~~s--~~~~~---~~~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          61 DFSSVGLAFFAAAAEVS--RAHAE---RARAAGCSVIDLSGALE   99 (144)
T ss_dssp             CGGGCSEEEECSCHHHH--HHHHH---HHHHTTCEEEETTCTTT
T ss_pred             hhccceEEEecCCcchh--hhhcc---ccccCCceEEeechhhc
Confidence            47899999999986443  23333   33456778887877543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.88  E-value=0.00054  Score=48.51  Aligned_cols=37  Identities=24%  Similarity=0.075  Sum_probs=30.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~   41 (297)
                      .++|+|||+|..|.-+|..|+.   .|.+|+++++++.-+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            4799999999999999987654   488999999876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.88  E-value=0.00036  Score=58.87  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHH
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~   39 (297)
                      ..++||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            34689999999999999999998766  69999998853

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.86  E-value=0.0063  Score=48.96  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +||++| |+ +-+|.++|..|++.|++|.+.||+++++++..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            478766 66 67999999999999999999999999887765443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.85  E-value=0.006  Score=43.56  Aligned_cols=95  Identities=13%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--ccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--DLH   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~   83 (297)
                      ++|.|+|.|.+|..++..|  .|++|.++|.+++..+.+           ...|..      ...+..+-.+.+.  .+.
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~-----------~~~~~~------~i~Gd~~~~~~L~~a~i~   61 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV-----------LRSGAN------FVHGDPTRVSDLEKANVR   61 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH-----------HHTTCE------EEESCTTSHHHHHHTTCT
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH-----------HhcCcc------ccccccCCHHHHHHhhhh
Confidence            4688999999999999998  477899999999987665           333321      0000000001122  267


Q ss_pred             CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      .|+.+|.+.+++..- ..+...+.++.+.-.+++...
T Consensus        62 ~A~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          62 GARAVIVNLESDSET-IHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             TCSEEEECCSSHHHH-HHHHHHHHHHCSSSCEEEECS
T ss_pred             cCcEEEEeccchhhh-HHHHHHHHHHCCCceEEEEEc
Confidence            899999988766542 223333444444445555433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.84  E-value=0.00063  Score=49.40  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|..|.-+|..|++.|++|+++++.+.-+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            4799999999999999999999999999999976644

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.80  E-value=0.00053  Score=48.60  Aligned_cols=37  Identities=19%  Similarity=0.056  Sum_probs=30.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~   41 (297)
                      .++|+|||+|.+|.-+|..|..   .|.+|+++++.+.-+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            4799999999999999976654   456899999876544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.80  E-value=0.00037  Score=50.14  Aligned_cols=49  Identities=14%  Similarity=0.162  Sum_probs=37.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQ   53 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~   53 (297)
                      .+++.|||+|..|.-+|..|++.|.+|+++++.+.-+...-..+.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~   74 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQ   74 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHH
Confidence            4799999999999999999999999999999876543333333344443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.80  E-value=0.00038  Score=49.55  Aligned_cols=37  Identities=11%  Similarity=-0.011  Sum_probs=33.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      -++|+|||+|.+|.-+|..|+..|.+|+++++.+.-+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            3799999999999999999999999999999876543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.79  E-value=0.0097  Score=44.86  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=34.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a   68 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA   68 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH
Confidence            689999999999998888888886 799999999998877

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.76  E-value=0.0004  Score=57.11  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +|.|||+|..|..+|..|+++|++|+++|++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999999865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.75  E-value=0.002  Score=48.81  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=32.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...++.+...|.+ |.+.|+++++++.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a   69 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA   69 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH
Confidence            6899999999999988888777875 55779999888776

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.71  E-value=0.00051  Score=54.82  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      ++|+|||+|.-|...|..|+++|+ +|+++++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            379999999999999999999996 799999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.71  E-value=0.00011  Score=58.72  Aligned_cols=29  Identities=21%  Similarity=0.064  Sum_probs=25.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||+|||+|.+|...|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            58999999999999999999999875443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.0015  Score=46.07  Aligned_cols=72  Identities=21%  Similarity=0.365  Sum_probs=52.4

Q ss_pred             cEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            6 KVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         6 ~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      ++|+|||+    +..|..+...|.+.||+|+.++++.+.+                             ..+.+..++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999996    6789999999999999988887654321                             12356777887


Q ss_pred             cc-CCcEEEEecccCHHHHHHHHHHHHh
Q 022407           82 LH-SADIIVEAIVESEDVKKKLFSELDK  108 (297)
Q Consensus        82 ~~-~aD~Vi~~v~e~~~~k~~~~~~l~~  108 (297)
                      +. ..|+++.++|.+.  ..+++++..+
T Consensus        53 lp~~~D~vvi~vp~~~--~~~~l~~~~~   78 (116)
T d1y81a1          53 LPKDVDVIVFVVPPKV--GLQVAKEAVE   78 (116)
T ss_dssp             SCTTCCEEEECSCHHH--HHHHHHHHHH
T ss_pred             ccccceEEEEEeCHHH--HHHHHHHHHh
Confidence            54 5699999998543  4455555444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.68  E-value=0.014  Score=46.98  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++-|.|+ +-+|.++|..|++.|++|.+.++++++++++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~   49 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI   49 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56777776 8899999999999999999999999888776443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.64  E-value=0.0016  Score=47.93  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMD-GL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      |||+|||+ |..|.-+...|.++ .|   ++..+..+..                  .|....  .......+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------------------~gk~~~--~~~~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------------------GVPAPN--FGKDAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------------------SSBCCC--SSSCCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------------------cccccc--cCCcceeeecccchh
Confidence            58999999 99999999877654 34   4444443321                  111100  000001111122333


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      ..+++|+||.|+|.+.  .+++..++.+. ...++++++++..
T Consensus        61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdf  100 (147)
T d1mb4a1          61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTL  100 (147)
T ss_dssp             HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred             hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCccc
Confidence            4789999999998655  33455544432 2235677777754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0019  Score=52.23  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=35.5

Q ss_pred             EEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Q 022407            7 VMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         7 ~V~-iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      |++ |.|+ +-+|.++|..|++.|++|.+.++++++++++.+.++
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            455 5566 889999999999999999999999998887755443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.62  E-value=0.011  Score=49.33  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=35.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|.|+ |.+|+.++..|.++||+|....|+.++.+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            479999987 9999999999999999999999998766554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.59  E-value=0.001  Score=50.72  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCC---CChhhh-cccCCceEEecCc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQ---LSQAMG-TDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~-~~~~~~i~~~~~~   79 (297)
                      -||+|.|.|++|+.+++.+... .++|.. .|+++......          +...+.   ...+.. .-....+....+.
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~v~g~~   71 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI----------AHRRGIRIYVPQQSIKKFEESGIPVAGTV   71 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHH----------HHHTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHH----------hcccCcceeccCccceeccccceecCCch
Confidence            3799999999999999998876 456664 46665432221          011211   011110 0011223333344


Q ss_pred             cc-ccCCcEEEEecccCH
Q 022407           80 KD-LHSADIIVEAIVESE   96 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v~e~~   96 (297)
                      .. ..++|+||||.+...
T Consensus        72 ~~~~~~vDiViecTG~f~   89 (178)
T d1b7go1          72 EDLIKTSDIVVDTTPNGV   89 (178)
T ss_dssp             HHHHHHCSEEEECCSTTH
T ss_pred             hhhhhcCCEEEECCCCcC
Confidence            44 568999999998644

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.59  E-value=0.002  Score=52.17  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ||++| |+ +-+|.++|..|++.|++|.+.|++++++++..+.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67766 55 77999999999999999999999999888775544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.59  E-value=0.017  Score=43.08  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+ |.+|...++.+...| ..|++.++++++++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~   69 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA   69 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHH
Confidence            58999995 999998888877778 4899999999987766

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.56  E-value=0.00089  Score=55.31  Aligned_cols=32  Identities=25%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      +|.|||+|.+|.+.|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999995 799999863

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.001  Score=55.20  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +..||+|||+|.-|..-|..|+++|++|++++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999998763

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.49  E-value=0.002  Score=48.83  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|-+|...+..+...|. .|++.|+++++.+.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            589999999999999999998884 899999999988776

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.0013  Score=51.85  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |+..- -|.|||+|.-|...|..|+++|++|+++|+++
T Consensus         2 m~~~y-DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDY-DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CCCBC-SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCcC-CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            44433 27899999999999999999999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.48  E-value=0.0023  Score=47.44  Aligned_cols=38  Identities=18%  Similarity=0.056  Sum_probs=31.3

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVV--GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~ii--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      ++|.|+  |.|.+|..+|..|++.|++|+++++.+.-...
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence            455555  99999999999999999999999987654433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.44  E-value=0.025  Score=42.28  Aligned_cols=40  Identities=25%  Similarity=0.230  Sum_probs=32.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~   44 (297)
                      -.+|.|+|+|.+|...++.+...| ..|++.|+++++++.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~   73 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA   73 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH
Confidence            368999999999998777776666 4778899999887766

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.42  E-value=0.0065  Score=48.03  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|+|-|.|.+|..+|..|.+.|..|++.|.+++.++.+
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~   78 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA   78 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHH
Confidence            689999999999999999999999999999999887665

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.42  E-value=0.0013  Score=53.59  Aligned_cols=30  Identities=33%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|..|.+.|..|+++|++|+++|+.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            899999999999999999999999999975

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.41  E-value=0.0012  Score=53.29  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~   39 (297)
                      .+|+|||+|.-|..+|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            589999999999999999999995 8999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.001  Score=52.61  Aligned_cols=34  Identities=26%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~   39 (297)
                      +||+|||+|.-|..-|..|+++  |++|++||+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4899999999999999999775  789999998764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.40  E-value=0.0044  Score=45.05  Aligned_cols=87  Identities=13%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    +..|..++..|..+||+|+.+++..+.+                             .-+.+..+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            368999997    5789999999999999999888654321                             1135677778


Q ss_pred             ccc-CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           81 DLH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        81 ~~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ++. ..|+|+.++|..  ...++++++.+.- ...++. .+.+..
T Consensus        70 dlp~~iD~v~i~vp~~--~~~~~~~e~~~~g-~k~v~~-~~G~~~  110 (139)
T d2d59a1          70 DIPDKIEVVDLFVKPK--LTMEYVEQAIKKG-AKVVWF-QYNTYN  110 (139)
T ss_dssp             GCSSCCSEEEECSCHH--HHHHHHHHHHHHT-CSEEEE-CTTCCC
T ss_pred             ccCccceEEEEEeCHH--HHHHHHHHHHHhC-CCEEEE-eccccC
Confidence            754 689999999743  3556666655542 334444 344433

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.37  E-value=0.029  Score=45.76  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=35.0

Q ss_pred             EEEEE-C-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVV-G-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~ii-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |++|| | +|-+|.++|..|++.|++|++.|++.+++++..+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            55555 5 599999999999999999999999999887765444

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.36  E-value=0.0017  Score=51.56  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .++|.|||+|.-|...|..|++.|++|++++.+.+
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            47999999999999999999999999999998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.029  Score=44.64  Aligned_cols=42  Identities=14%  Similarity=0.056  Sum_probs=34.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+.|-|+ +-+|..+|..|+++|.+|.+.|+++++++...+.+
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~   51 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   51 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445577 66999999999999999999999999888775543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0012  Score=54.75  Aligned_cols=33  Identities=21%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -.|.|||+|.-|...|..|++.|++|++++.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            469999999999999999999999999999764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.0014  Score=51.51  Aligned_cols=39  Identities=10%  Similarity=0.003  Sum_probs=31.7

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE--eCCHHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV--DTDPDALV   42 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~--d~~~~~~~   42 (297)
                      .+++|.|.|+ |.+|+.++..|++.|++|.++  .|++++.+
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4689999996 999999999999999886655  56766543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.25  E-value=0.004  Score=50.44  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=36.3

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      -||++| |+ +-+|.++|..|++.|++|.+.||++++++++.+.+
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367766 54 88999999999999999999999999888775544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.035  Score=41.45  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=34.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|+|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV   69 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccccccccc
Confidence            368999996 9999988887778899999999998877665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.24  E-value=0.0024  Score=51.45  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=35.2

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      .||++| |+ +-+|.++|..|++.|++|.+.|++++.++++.+.
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~   53 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE   53 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            356665 66 7899999999999999999999999988776544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.0031  Score=45.29  Aligned_cols=81  Identities=12%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             cEEEEECC----ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            6 KVMGVVGS----GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         6 ~~V~iiG~----G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      ++|+|||+    |.+|..+..+|...| ++|+.+++..+.+                             ..+.+..+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            79999997    889999999987766 6888887764321                             2235777888


Q ss_pred             ccc-CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           81 DLH-SADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++. ..|+++.++|.+.  ..++++++.+.--+..++.
T Consensus        60 dlp~~vDlvvi~vp~~~--~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          60 DIPDEIDLAIIVVPKRF--VKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             SCSSCCSEEEECSCHHH--HHHHHHHHHHHTCCEEEEC
T ss_pred             hcCCCCceEEEecChHH--hHHHHHHHHHcCCCEEEEe
Confidence            854 6899999998433  4456666655433344444

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.014  Score=42.00  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=23.0

Q ss_pred             EEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeC
Q 022407            7 VMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDT   36 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~-~G~~V~-~~d~   36 (297)
                      ||+|+|+ |.||+.++..+.+ .++++. .+|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            7999995 9999999887665 466655 4554

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.22  E-value=0.0049  Score=46.48  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=26.9

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCC-CcEE-EEeCCHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVW-LVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~   39 (297)
                      |.||+|-|.|++|+.+.+.+...+ .+|. +-|+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            368999999999999999887765 4555 4566654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.03  Score=45.87  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+.|.|+ +-+|.++|..|++.|++|.+.|++.++++...+.+
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el   56 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   56 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445566 77999999999999999999999999887765443

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.20  E-value=0.024  Score=44.81  Aligned_cols=101  Identities=13%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             CcEEEEECCChhHHHHHH----HHHH--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407            5 MKVMGVVGSGQMGSGIAQ----LGVM--DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS   77 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   77 (297)
                      ..||||||+|.+|..++.    .+.+  .+++|. ++|+++++.+.+.+          +.+.          ......+
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~----------~~~~----------~~~~~~~   75 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE----------QLQL----------KHATGFD   75 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH----------HTTC----------TTCEEES
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHH----------hccc----------ccceeec
Confidence            368999999987644443    3433  356766 89999988766521          1111          1124556


Q ss_pred             Cccc-c--cCCcEEEEecccCHHHHHHHHHHHHhhc---cCCeEEeecCCCccHH
Q 022407           78 NLKD-L--HSADIIVEAIVESEDVKKKLFSELDKIT---KASAILASNTSSISIT  126 (297)
Q Consensus        78 ~~~~-~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~---~~~~ii~s~ts~~~~~  126 (297)
                      ++++ +  .+-|+|+.|+|...+.. .+...++...   ....+++--.-+.+.+
T Consensus        76 ~~~~l~~~~~iD~V~i~tp~~~h~~-~~~~al~aG~~~~~~k~V~~EKPla~~~~  129 (237)
T d2nvwa1          76 SLESFAQYKDIDMIVVSVKVPEHYE-VVKNILEHSSQNLNLRYLYVEWALAASVQ  129 (237)
T ss_dssp             CHHHHHHCTTCSEEEECSCHHHHHH-HHHHHHHHSSSCSSCCEEEEESSSSSSHH
T ss_pred             chhhcccccccceeeccCCCcchhh-HHHHHHHhcccccCCceEEEeccccCCHH
Confidence            7766 3  46899999998766532 2333343321   2234666544455553

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0087  Score=48.46  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.+|+.++++++.+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666677 669999999999999999999999998887644

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.019  Score=45.79  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+.|-|+ +-+|.++|..|++.|++|.+.|+++++++.+
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   46 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   46 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            3444476 7799999999999999999999999887665

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.14  E-value=0.0066  Score=45.81  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEE-EEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVW-LVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~~   40 (297)
                      .||+|.|.|++|+.+...+.... .+|. +.|.++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            58999999999999999887653 4544 66776543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.007  Score=48.35  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.|+++++++++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~   47 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL   47 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            46666677 7899999999999999999999999887765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.06  E-value=0.014  Score=44.76  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|.+|...+..+...|. .|++.|.++++++.+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a   66 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA   66 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh
Confidence            689999999999776666656666 788999999998876

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0057  Score=45.94  Aligned_cols=71  Identities=24%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS   84 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   84 (297)
                      ++|+|||-+. +|.++|..|++.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            6899999955 799999999999999999986533221                                     12467


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      ||++|.++....-++       ..+++++++++...
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvg  111 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCG  111 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECC
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccC
Confidence            999999886544332       24567888777543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0088  Score=43.86  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      ++|.|||+|.+|..-|..|+++|-+|++++.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            7899999999999999999999999999964

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.03  E-value=0.024  Score=41.64  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=53.9

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-c
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-D   81 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (297)
                      ||+|||+ |..|.-+...|.++.+   ++..+..+..                  .|..    ..............+ +
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------------------~G~~----~~~~~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------------------AGKS----LKFKDQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------------------TTCE----EEETTEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------------------cccc----ccccCCcccccccchhh
Confidence            7999999 9999999999998865   3444432211                  1210    011111122222223 3


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                      ..++|+++.+.|.....  ..   ..+....++.|+++++...
T Consensus        61 ~~~~d~~f~~~~~~~s~--~~---~~~~~~~~~~VIDlSsdfR   98 (154)
T d2gz1a1          61 FEGVDIALFSAGSSTSA--KY---APYAVKAGVVVVDNTSYFR   98 (154)
T ss_dssp             TTTCSEEEECSCHHHHH--HH---HHHHHHTTCEEEECSSTTT
T ss_pred             hhhhhhhhhccCccchh--hH---HhhhccccceehhcChhhh
Confidence            77899999999854432  22   2234456788888887654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.01  E-value=0.033  Score=41.97  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~   81 (297)
                      |+||+|||+ |..|.-+.+.|.++ .+++... -++.+..  +.+.+......+  .+.        .........+...
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~--aGk~~~~~~~~~--~~~--------~~~~~~~~~~~~~   68 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSND--AGKLISDLHPQL--KGI--------VDLPLQPMSDVRD   68 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTT--TTCBHHHHCGGG--TTT--------CCCBEEEESCGGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccc--cccccccccccc--ccc--------cccccccchhhhh
Confidence            368999997 99999999999997 6676543 2221100  000000000000  000        0011222333333


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS  124 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~  124 (297)
                       ..++|++|.|+|....  .++..   .....+..++.+++..-
T Consensus        69 ~~~~~dvvf~alp~~~s--~~~~~---~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          69 FSADVDVVFLATAHEVS--HDLAP---QFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             TCTTCCEEEECSCHHHH--HHHHH---HHHHTTCEEEECSSTTS
T ss_pred             hhcccceeeccccchhH--HHHhh---hhhhcCceeeccccccc
Confidence             5789999999986443  22222   33445677776766543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.98  E-value=0.008  Score=48.46  Aligned_cols=43  Identities=19%  Similarity=0.170  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.|++++++++..+.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34455576 67999999999999999999999999888765443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0016  Score=51.44  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-------cEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-------DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-------~V~~~d~~~~   39 (297)
                      .||+|||+|.-|.+-|..|+++||       +|++||..+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            589999999999999999999884       7999998763

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0026  Score=53.00  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|..-|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999999754

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.96  E-value=0.033  Score=44.14  Aligned_cols=39  Identities=26%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ +-+|..+|..|++.|++|.+.+|+.+++++.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45556677 6699999999999999999999999877654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.94  E-value=0.008  Score=48.50  Aligned_cols=42  Identities=33%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +.+.|.|+ +-+|.++|..|++.|++|.+.|++++.++++.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS   48 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34555576 6799999999999999999999999988776544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0023  Score=47.85  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|+|||-+. +|.++|..|.+.|..|++.+...
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            7899999966 89999999999999999997543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0041  Score=49.80  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=35.1

Q ss_pred             CCCCCcEEEEE--CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVV--GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~ii--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.+-.-|+++|  |++.+|+++|..|++.|++|.+.|++++++++.
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~   46 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL   46 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            54433466666  559999999999999999999999998876553

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0066  Score=48.48  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|++++.++++.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~   45 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAIS   45 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            45555 66 77999999999999999999999998877663

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.011  Score=47.44  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.|++.+++++..+.+
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34556676 77999999999999999999999999887765443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.88  E-value=0.0058  Score=49.68  Aligned_cols=42  Identities=21%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++.|.|+ +-+|.++|..|++.|++|.+.|+++++++++.+.+
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l   49 (272)
T d1xkqa_           7 TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   49 (272)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4444466 88999999999999999999999999888775543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.87  E-value=0.0033  Score=50.06  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=29.9

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|..|...|..|+++|++|.++|+++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999998753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.84  E-value=0.034  Score=44.51  Aligned_cols=39  Identities=23%  Similarity=0.266  Sum_probs=33.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.|++++++++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45666677 6799999999999999999999999877655

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.80  E-value=0.022  Score=45.60  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|+++++++++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~   46 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL   46 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45555 65 7799999999999999999999999887765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.79  E-value=0.0068  Score=45.60  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=34.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      ++|.|+|+|.+|...+..++..|- +|+..|+++++++.+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a   69 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA   69 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH
Confidence            689999999999988888887765 699999999988876

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=95.78  E-value=0.008  Score=48.22  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=33.1

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|++++.++.+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA   47 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            55555 65 78999999999999999999999998877653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.77  E-value=0.0083  Score=48.81  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=34.7

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++-|-|+ +-+|.++|..|++.|++|.+.|+++++++++.+.+
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4444466 77999999999999999999999999888775544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.76  E-value=0.0032  Score=48.34  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |+....+|.|||+|.-|..-|..+++.|.+|.++|..
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            6666689999999999999999999999999999854

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0051  Score=49.17  Aligned_cols=40  Identities=23%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      ||++| |+ +-+|.++|..|++.|++|.+.|++.+.++...+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            56655 65 779999999999999999999999988776543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.73  E-value=0.0039  Score=51.55  Aligned_cols=33  Identities=27%  Similarity=0.144  Sum_probs=30.7

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .|+|||+|.-|..+|..|.++|++|+++|.+++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            699999999999999999999999999998653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0059  Score=44.16  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CcEEEEECCChhHHHHHHHHH----HCCCcEEEEeCCHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV----MDGLDVWLVDTDPDAL   41 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~----~~G~~V~~~d~~~~~~   41 (297)
                      .++|.|||+|..|.-+|..|+    ..|.+|+++++++.-+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            468999999999999999886    3589999999876544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.70  E-value=0.0094  Score=48.05  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.+++++++++..+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34545566 7799999999999999999999999988776544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.67  E-value=0.018  Score=43.05  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~   44 (297)
                      .+|.|+|+|-+|...++.+...|. .|+..|+++++.+.+
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a   69 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA   69 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHH
Confidence            689999999999888777777885 677889999887766

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.67  E-value=0.004  Score=46.59  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~   38 (297)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            699999999999999999999875  789998876

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.058  Score=43.01  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.++++++++++.+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            55555 55 78999999999999999999999999887765544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.65  E-value=0.0046  Score=50.14  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      .+||.|+|+ |.+|+.++..|.++||+|++++|++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999998 999999999999999999999997654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.63  E-value=0.014  Score=46.86  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .+.|-|+ +-+|.++|..|++.|++|.+.|++++++++..+.+
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4445576 67999999999999999999999999887765443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.63  E-value=0.0046  Score=51.97  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=33.8

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +.++|.|+|+ |.+|+.++..|+++||+|++.-|++++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            3578999997 9999999999999999999999887654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.62  E-value=0.011  Score=47.19  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      |.-+-+++.|.|+ +-+|.++|..|++.|++|.+.|++++++++.
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~   45 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4333345556676 6799999999999999999999999887765

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.61  E-value=0.015  Score=47.26  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|-|+ +-+|.++|..|++.|++|.+.|+++++++++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~   45 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL   45 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45666676 8999999999999999999999999887665

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.56  E-value=0.049  Score=43.48  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++-|.|+ +-+|.++|..|++.|++|.+.|++.++++..
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARAT   45 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34555566 8899999999999999999999999887765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.071  Score=42.35  Aligned_cols=39  Identities=31%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|-|+ +-+|.++|..|++.|++|.+.|++++.++++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   46 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34555566 8899999999999999999999999887665

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.028  Score=40.41  Aligned_cols=83  Identities=16%  Similarity=0.112  Sum_probs=57.5

Q ss_pred             CcEEEEECC----ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407            5 MKVMGVVGS----GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   80 (297)
                      .++|+|||+    +..|..+..+|.+.||++..+..++...                           ......+..++.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~   65 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLL   65 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchh
Confidence            368999998    7899999999999999999998765310                           111235667777


Q ss_pred             cc-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           81 DL-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        81 ~~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      ++ ...|+|+.++|.+.  ..+++++..+.- ...++.
T Consensus        66 ~i~~~iD~v~v~~p~~~--v~~~v~~~~~~g-~k~i~~  100 (136)
T d1iuka_          66 DLKEPVDILDVFRPPSA--LMDHLPEVLALR-PGLVWL  100 (136)
T ss_dssp             GCCSCCSEEEECSCHHH--HTTTHHHHHHHC-CSCEEE
T ss_pred             hccCCCceEEEeccHHH--HHHHHHHHHhhC-CCeEEE
Confidence            75 45799999997433  445555554442 344554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.52  E-value=0.014  Score=47.22  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT   45 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~   45 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|+++++++++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC   47 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45544 65 77999999999999999999999998877663

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.51  E-value=0.0057  Score=49.95  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +.+||.|+|+ |.+|+.++..|.++||+|++.+|++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            3468999996 99999999999999999999998654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.51  E-value=0.0039  Score=52.06  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             EEEEECCChhHHHHHHHHH-----HCCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGV-----MDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~-----~~G~~V~~~d~~~~   39 (297)
                      -|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            3899999999999999996     58999999998654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.47  E-value=0.0039  Score=50.00  Aligned_cols=34  Identities=21%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|..|...|..++++|++|.++|+++.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3599999999999999999999999999999865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.011  Score=48.07  Aligned_cols=43  Identities=21%  Similarity=0.121  Sum_probs=36.5

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVV--GSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~ii--G~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      ++|+||  |.+-+|..+|..|++. |..|.+.+|+.++++++.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            589988  5588999999999975 999999999999988775554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0059  Score=48.83  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            589999999999999999999998 789998653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.019  Score=46.10  Aligned_cols=44  Identities=14%  Similarity=0.173  Sum_probs=36.8

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVM---DGLDVWLVDTDPDALVRATKSIS   49 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~   49 (297)
                      .||+|| |+ +-+|.++|..|++   .|++|.+.+|++++++++.+.+.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            578888 66 6799999999986   79999999999999888755543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.22  E-value=0.04  Score=43.61  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCc-------EEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLD-------VWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~-------V~~~d~~~~~~~~~~~~   47 (297)
                      |+|.+| |+ +-+|.++|..|++.|++       |.+++++++.+++..+.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~   51 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE   51 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence            466655 76 67999999999999998       99999999988776443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.19  E-value=0.018  Score=43.11  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|.|+ |.+|....+.+...|.+|+..++++++.+.+
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            368999996 9999887777778899999999998877765

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.14  Score=40.48  Aligned_cols=38  Identities=24%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             cEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      +++.|.|++   -+|.++|..|++.|++|.+.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            456677874   49999999999999999999998765443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.10  E-value=0.012  Score=49.48  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      -|||.|.|+ |.+|+.++..|.+.||+|+++|+..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            378999986 9999999999999999999999754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.10  E-value=0.081  Score=42.32  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             cEEEEECC-C--hhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGS-G--QMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G--~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++.|.|+ |  -+|.++|..|++.|++|++.+++++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56777786 5  4999999999999999999999865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.023  Score=45.39  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .+.|.|+ +-+|.++|..|++.|++|.+.|++.+++++..+
T Consensus         5 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3444466 779999999999999999999999998877643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.03  Score=44.44  Aligned_cols=39  Identities=21%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.|+++++++++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL   45 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45666677 6799999999999999999999999887665

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=95.00  E-value=0.0093  Score=45.25  Aligned_cols=41  Identities=15%  Similarity=-0.074  Sum_probs=35.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (297)
                      -++|-.+|||. | ..+..|++.|++|+.+|.+++.++.++++
T Consensus        21 ~~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          21 GARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             TCEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CCEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            36899999998 4 47779999999999999999999887543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.98  E-value=0.038  Score=44.37  Aligned_cols=38  Identities=16%  Similarity=0.109  Sum_probs=30.3

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRA   44 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~   44 (297)
                      |++|| |+ +-+|.++|..|++.|++|.+.+++.+ .++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            55555 55 88999999999999999999999854 44444

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.97  E-value=0.02  Score=45.27  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=32.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.||+++.+++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            46677777 779999999999999999999999876543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.94  E-value=0.025  Score=45.33  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKS   47 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~   47 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.+++ .+.++++.+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            45555 55 779999999999999999999997 4556555443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.92  E-value=0.0097  Score=44.72  Aligned_cols=34  Identities=18%  Similarity=0.080  Sum_probs=30.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .++|.|||+|..|.-+|..|.+.|.+|+++.+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            4689999999999999999999999988876654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.87  E-value=0.01  Score=45.46  Aligned_cols=33  Identities=12%  Similarity=0.021  Sum_probs=28.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~   38 (297)
                      |||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  55799998754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.81  E-value=0.027  Score=42.73  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=25.2

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEe
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVD   35 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d   35 (297)
                      ..||+|||+ |..|.-+.+.|.++ .+++....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            358999999 99999999999986 44666554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.067  Score=42.69  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc---
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD---   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---   81 (297)
                      -++|.=+|||. |. ++..+++.|.+|+.+|.+++.++.+++..+       ..|. .        .++ ...+..+   
T Consensus       121 g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~-------~n~~-~--------~~~-~~~d~~~~~~  181 (254)
T d2nxca1         121 GDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAK-------RNGV-R--------PRF-LEGSLEAALP  181 (254)
T ss_dssp             TCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHH-------HTTC-C--------CEE-EESCHHHHGG
T ss_pred             cCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHH-------HcCC-c--------eeE-Eecccccccc
Confidence            36899999997 53 566778889999999999999888755432       1221 1        111 2223222   


Q ss_pred             ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      -...|+|+..+.  ......++.++.+.++++..++
T Consensus       182 ~~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         182 FGPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             GCCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            346788886653  3345567778888887766554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.78  E-value=0.02  Score=45.98  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=34.5

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      |++.|.|+ +-+|.++|..|++.|++|.+.|++.+.+++..+.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            34445566 67999999999999999999999998877665443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.014  Score=48.60  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      |||.|+|+ |.+|+.++..|++.||+|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999987 99999999999999999999986

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.76  E-value=0.011  Score=47.22  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |||.|| |+ +-+|.++|..|++.|++|.+.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355555 65 77999999999999999999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.74  E-value=0.0081  Score=48.36  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||.|.|+ |.+|+.++..|.+.||+|+..|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            68999998 9999999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.086  Score=41.75  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             cEEEEECCCh---hHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGSGQ---MGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~G~---mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|-|.|++.   +|.++|..|++.|++|++.+++++..+.+
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            4666667643   77999999999999999999986644443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.65  E-value=0.011  Score=43.76  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      .||.|||+|..|.-+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999998864 78999998743

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.59  E-value=0.012  Score=47.77  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             EEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHH
Q 022407            7 VMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~   39 (297)
                      -|.|||+|.-|...|..|++ .|++|+++|+.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998753

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.52  E-value=0.012  Score=44.19  Aligned_cols=34  Identities=21%  Similarity=-0.043  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeC
Q 022407            3 EKMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDT   36 (297)
Q Consensus         3 ~~~~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~   36 (297)
                      +...+|+|||+|.||...+..+.+..  ..+.+++.
T Consensus         5 ~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            34568999999999999887766432  23555553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.52  E-value=0.071  Score=42.49  Aligned_cols=36  Identities=25%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             cEEEEECC-Ch--hHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            6 KVMGVVGS-GQ--MGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~-G~--mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      +++.|.|+ |.  +|.++|..|++.|.+|.+.+++.+++
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            56778886 65  99999999999999999999988764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.019  Score=44.36  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|.+++.+
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999975

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.024  Score=47.20  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=28.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999987 99999999999999999999984

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.27  E-value=0.066  Score=43.03  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=30.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH-HHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP-DALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~   44 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            34555565 8999999999999999999998874 444444

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.02  Score=44.95  Aligned_cols=39  Identities=10%  Similarity=-0.155  Sum_probs=34.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK   46 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~   46 (297)
                      .+|-.+|||. | ..+..|++.|++|+.+|.+++.++.+++
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            5899999998 4 5788999999999999999998887643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.017  Score=43.75  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -++|.|||.|.-|..-|..+++.|.+|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            357999999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.02  Score=44.62  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|..-|..+++.|++|.++|..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8999999999999999999999999999754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.16  E-value=0.019  Score=46.93  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|...|..++++|++|.+++..+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            8999999999999999999999999999753

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.15  E-value=0.1  Score=41.21  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=28.5

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            45555 66 779999999999999999999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.13  E-value=0.024  Score=47.20  Aligned_cols=35  Identities=20%  Similarity=0.043  Sum_probs=32.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      +||.|.|+ |.+|+.++..|.+.|++|.++|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            79999986 999999999999999999999997654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.019  Score=49.62  Aligned_cols=33  Identities=21%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            589999999999999999999999 899999754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.11  Score=38.86  Aligned_cols=96  Identities=11%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE-EecCccc
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR-CTSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~   81 (297)
                      |.||+|+|+ |..|.-+...|+++- +++..+-.+...    -+.+.....              ....... ...+.++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a----G~~i~~~~p--------------~~~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA----GKKLEEIFP--------------STLENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT----TSBHHHHCG--------------GGCCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC----CCcccccCc--------------hhhccccccccCHhH
Confidence            368999999 999999999998863 355544322111    001100000              0001111 1223334


Q ss_pred             -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407           82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI  125 (297)
Q Consensus        82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~  125 (297)
                       .+++|+|+.|+|.....  +..    ... .++.++.+++..-.
T Consensus        63 ~~~~~dvvf~a~p~~~s~--~~~----~~~-~~~~VIDlSadfRl  100 (176)
T d1vkna1          63 VSKNCDVLFTALPAGASY--DLV----REL-KGVKIIDLGADFRF  100 (176)
T ss_dssp             HHHHCSEEEECCSTTHHH--HHH----TTC-CSCEEEESSSTTTC
T ss_pred             hccccceEEEccccHHHH--HHH----Hhh-ccceEEecCccccc
Confidence             46899999999987642  222    222 45677778876644

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.04  E-value=0.26  Score=38.86  Aligned_cols=37  Identities=32%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      +++.|-|+ +-+|.++|..|++.|++|.+.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            34555565 88999999999999999999999987544

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.02  E-value=0.024  Score=44.28  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|..-|..+++.|++|.++|.++
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999999764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.01  E-value=0.047  Score=43.63  Aligned_cols=41  Identities=22%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHH
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKS   47 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~   47 (297)
                      ++.|.|+ +-+|.++|..|++.|++|.+. +++.+.++...+.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~   50 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE   50 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHH
Confidence            4445565 779999999999999999985 5666666665443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.095  Score=39.12  Aligned_cols=39  Identities=10%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|...++.+...|.+|...++++++.+.+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            57988885 9999988888888899999999998877655

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.99  E-value=0.059  Score=42.68  Aligned_cols=41  Identities=27%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             EEEE-CC-ChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHH
Q 022407            8 MGVV-GS-GQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSI   48 (297)
Q Consensus         8 V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~   48 (297)
                      |++| |+ +-+|.++|..|++.|++|.+.+ ++++.++++.+.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~   46 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            5555 54 8899999999999999999865 5777666654443

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=93.98  E-value=0.44  Score=37.84  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             EEEE-CC-ChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHH
Q 022407            8 MGVV-GS-GQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSI   48 (297)
Q Consensus         8 V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~   48 (297)
                      |+|| |+ +-+|.++|..|++.|++|.+.++ +++.++++.+.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l   47 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   47 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence            7777 55 78999999999999999998665 555555554433

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.90  E-value=0.024  Score=48.21  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=28.9

Q ss_pred             EEEECCChhHHHHHHHHHH------CCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVM------DGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~------~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|+..|..|++      +|++|.++|+..
T Consensus        35 ViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            9999999999999999997      899999999864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.88  E-value=0.067  Score=42.51  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             EEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407            8 MGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL   41 (297)
Q Consensus         8 V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~   41 (297)
                      |++| |+ +-+|.++|..|+++|++|.+.+++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            4555 55 6699999999999999999999986543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.86  E-value=0.17  Score=37.80  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|...++.....|.+|+..++++++.+.+
T Consensus        31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~   70 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL   70 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH
Confidence            67888888 6688777777778899999999999887765

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.03  Score=46.04  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=29.2

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +||.|.|+ |.+|+.++..|++.|++|+.+|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999988 99999999999999999999986

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.72  E-value=0.35  Score=36.35  Aligned_cols=93  Identities=17%  Similarity=0.259  Sum_probs=58.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc--c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD--L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--~   82 (297)
                      .+|.=||||. |. .+..|++.|++|+.+|.+++.++.+++...       +.+.          .++.+ ..|...  .
T Consensus        32 grvLDiGcG~-G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~-------~~~~----------~~~~~~~~d~~~~~~   92 (198)
T d2i6ga1          32 GRTLDLGCGN-GR-NSLYLAANGYDVTAWDKNPASMANLERIKA-------AEGL----------DNLQTDLVDLNTLTF   92 (198)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC----------TTEEEEECCTTTCCC
T ss_pred             CcEEEECCCC-CH-HHHHHHHHhhhhccccCcHHHHHHHHHHhh-------hccc----------cchhhhheecccccc
Confidence            5899999994 54 677889999999999999998887754332       1221          12222 223222  2


Q ss_pred             -cCCcEEEEec-cc--CHHHHHHHHHHHHhhccCCeEEe
Q 022407           83 -HSADIIVEAI-VE--SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 -~~aD~Vi~~v-~e--~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                       ..-|+|+... ..  +......+++++.+.++++.+++
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence             3358877532 11  11235678888988888876544

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.01  Score=46.73  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~   39 (297)
                      ++|.|.|+ |.+|+.++..|.+.|.  +|++++|++.
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            68999988 9999999999999885  8999998764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.69  E-value=0.024  Score=43.81  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999999753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=93.66  E-value=0.027  Score=47.01  Aligned_cols=30  Identities=33%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      -|.|||+|.-|..+|..|+++|++|.+++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            388999999999999999999999999986

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.61  E-value=0.39  Score=37.29  Aligned_cols=93  Identities=15%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL-   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-   82 (297)
                      .++|.=||||. | .++..|++.|++|+.+|.+++.++.+++...       +.+.           ++.+ ..+.+.+ 
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~-------~~~~-----------~i~~~~~d~~~l~  101 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAK-------ERNL-----------KIEFLQGDVLEIA  101 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC-----------CCEEEESCGGGCC
T ss_pred             CCEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccc-------cccc-----------cchheehhhhhcc
Confidence            35799999998 5 4566789999999999999998887755432       1121           1112 2223321 


Q ss_pred             --cCCcEEEEec----ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           83 --HSADIIVEAI----VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 --~~aD~Vi~~v----~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ...|+|+.+-    .-+..-.+..++++.+.++++.+++
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence              3468777532    1122234578889999998877554

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.57  E-value=0.032  Score=47.28  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      |||.|.|+ |.+|+.++..|++.||+|+++|-
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            68999987 99999999999999999999983

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=93.54  E-value=0.032  Score=46.75  Aligned_cols=29  Identities=17%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      |.|||+|.-|+.+|..|+++|++|.+.++
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            78999999999999999999999999987

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.50  E-value=0.026  Score=44.49  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      .||.|.|+ +-+|.++|..|+++|++|.+.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            57888887 89999999999999999999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.035  Score=41.46  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=28.4

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -|.|||+|..|...|..+++.|.+|.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3789999999999999999999999999864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=93.42  E-value=0.028  Score=46.32  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|...|..++++|++|.+++..+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.41  E-value=0.096  Score=41.39  Aligned_cols=30  Identities=27%  Similarity=0.250  Sum_probs=27.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      ++|+|-|.|++|...|..|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            689999999999999999999999987554

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.28  E-value=0.013  Score=44.17  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=26.8

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +|.|||+|..|..+|..|.+.|++|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            599999999999999999999988776654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.14  E-value=0.078  Score=41.73  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++.|.|+ +-+|.++|..|++.|++|.+.+++.+
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45555677 67999999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.14  E-value=0.048  Score=44.57  Aligned_cols=33  Identities=27%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|-|.|+ |.+|+.++..|++.||+|+.+|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57889987 9999999999999999999999864

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.02  E-value=0.026  Score=46.99  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      +|||.|.|+ |.+|+.++..|.+.|++|.++.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            579999986 99999999999999998766654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.052  Score=41.80  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=28.3

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|.++|..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999875

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.95  E-value=0.038  Score=42.72  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=29.2

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .|.|||+|.-|...|..+++.|.+|++++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4899999999999999999999999999975

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=92.90  E-value=0.22  Score=38.38  Aligned_cols=97  Identities=7%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CcEEEEECCChhHH--HHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc
Q 022407            5 MKVMGVVGSGQMGS--GIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~--~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   81 (297)
                      -.+|.=||||.-..  .++..+...|.+|+.+|.+++-++.+++.+.       +.+.         ..++.. ..+..+
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-------~~~~---------~~~~~~~~~d~~~  103 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-------AYHS---------EIPVEILCNDIRH  103 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-------TSCC---------SSCEEEECSCTTT
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-------hhcc---------cchhhhccchhhc
Confidence            35899999976433  3343333468899999999999888865432       1111         112222 223222


Q ss_pred             --ccCCcEEEEeccc---CHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 --LHSADIIVEAIVE---SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 --~~~aD~Vi~~v~e---~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ...+|+|+.+..-   +.+-...+++++.+.++++.+++
T Consensus       104 ~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  144 (225)
T d1im8a_         104 VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLV  144 (225)
T ss_dssp             CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceee
Confidence              3456766543210   11224578899999988877554

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.89  E-value=0.054  Score=41.61  Aligned_cols=30  Identities=30%  Similarity=0.240  Sum_probs=28.4

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            789999999999999999999999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=92.84  E-value=0.045  Score=45.87  Aligned_cols=29  Identities=28%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      |.|||+|.-|+.+|..|+++|++|.+.++
T Consensus        10 vIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            77999999999999999999999999996

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.80  E-value=0.96  Score=32.86  Aligned_cols=69  Identities=16%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCC-----HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407            6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTD-----PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL   79 (297)
Q Consensus         6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   79 (297)
                      .||++||-| ++..+++..+.+-|.+|++..+.     ++.++.+.+..       ..           ....+..+++.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~d~   66 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------AE-----------SGGSFELLHDP   66 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------HH-----------HTCEEEEESCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------hc-----------ccceEEEecCH
Confidence            589999984 46678888888899999999653     33222221110       11           11345677787


Q ss_pred             cc-ccCCcEEEEec
Q 022407           80 KD-LHSADIIVEAI   92 (297)
Q Consensus        80 ~~-~~~aD~Vi~~v   92 (297)
                      .+ ++++|+|....
T Consensus        67 ~ea~~~adviy~~~   80 (163)
T d1pvva2          67 VKAVKDADVIYTDV   80 (163)
T ss_dssp             HHHTTTCSEEEECC
T ss_pred             HHHhhhccEEeecc
Confidence            76 99999999654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.036  Score=43.22  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++.|++|.++|..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999953

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.51  E-value=0.039  Score=39.54  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             CcEEEEECCC----------hhHHHHHHHHHHCCCcEEEEeCCHHHHHHH---HHHHHHHHHHHHHcCCCChhhhcccCC
Q 022407            5 MKVMGVVGSG----------QMGSGIAQLGVMDGLDVWLVDTDPDALVRA---TKSISSSIQKFVSKGQLSQAMGTDAPR   71 (297)
Q Consensus         5 ~~~V~iiG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~   71 (297)
                      .+||+|+|+-          .-...++..|...|++|.+||+.-+..+..   .+.+.+....                .
T Consensus        13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~----------------~   76 (136)
T d1mv8a3          13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPH----------------V   76 (136)
T ss_dssp             CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHH----------------H
T ss_pred             CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhcccc----------------c
Confidence            3689999973          467788889999999999999743221100   0000000000                0


Q ss_pred             ceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407           72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .....+++.+ ++++|+||.+++.+.      |.++......+.+|.....
T Consensus        77 ~~~~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~  121 (136)
T d1mv8a3          77 SSLLVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVG  121 (136)
T ss_dssp             HTTBCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSS
T ss_pred             cceeehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCC
Confidence            0123456655 889999999997654      2334444445555554443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.11  Score=36.04  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCcEEEEECCC-----------hhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            3 EKMKVMGVVGSG-----------QMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         3 ~~~~~V~iiG~G-----------~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ...+||.|||+|           ..+...+..|.+.|+++.+++.||+
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            346899999998           4667778889999999999999987

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.064  Score=44.31  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC-cEEEEeCCHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL-DVWLVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~   40 (297)
                      |||.|.|+ |.+|+.++..|++.|+ +|+++|+....
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~   37 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA   37 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence            58999987 9999999999999995 89999986543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.27  E-value=0.07  Score=43.87  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +++-|.|+ |.+|+.++..|++.||+|+.+|+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            45667777 9999999999999999999999853

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.15  E-value=0.063  Score=45.03  Aligned_cols=30  Identities=27%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +.|||+|.-|+-+|..|+++|++|.+.++-
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            679999999999999999999999999864

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.066  Score=44.22  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.1

Q ss_pred             cEEE-EECC-ChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMG-VVGS-GQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~-iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +||+ |.|+ |.+|+.++..|.+.||+|+.+|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5785 6676 9999999999999999999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.12  E-value=0.1  Score=40.09  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc--
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL--   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--   82 (297)
                      -.+|.=||||. | .++..|++.|.+|+.+|.+++.++.+++...       ..+..         .. ....|...+  
T Consensus        38 ~~~ILDiGcG~-G-~~~~~la~~~~~v~giD~S~~~i~~ak~~~~-------~~~~~---------~~-~~~~d~~~l~~   98 (226)
T d1ve3a1          38 RGKVLDLACGV-G-GFSFLLEDYGFEVVGVDISEDMIRKAREYAK-------SRESN---------VE-FIVGDARKLSF   98 (226)
T ss_dssp             CCEEEEETCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTCC---------CE-EEECCTTSCCS
T ss_pred             CCEEEEECCCc-c-hhhhhHhhhhcccccccccccchhhhhhhhc-------ccccc---------cc-ccccccccccc
Confidence            35899999998 3 3667888999999999999998888755432       22210         01 122233321  


Q ss_pred             --cCCcEEEEec-cc--CHHHHHHHHHHHHhhccCCeEEe
Q 022407           83 --HSADIIVEAI-VE--SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 --~~aD~Vi~~v-~e--~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ...|+|+..- .+  ...-...+++++.+.++++..++
T Consensus        99 ~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1          99 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEE
Confidence              3457777432 11  11124568899999998876543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.06  E-value=0.084  Score=43.60  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .++|-|.|+ |.+|+.++..|.+.||+|+++|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            367888877 99999999999999999999986

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.94  E-value=0.054  Score=42.38  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=28.6

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            44555 65 889999999999999999999998763

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.93  E-value=0.079  Score=43.33  Aligned_cols=30  Identities=27%  Similarity=0.592  Sum_probs=27.6

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      ||.|.|+ |.+|+.++..|.+.||+|+.+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888877 99999999999999999999984

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.1  Score=36.62  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CCCcEEEEECCCh-----------hHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407            3 EKMKVMGVVGSGQ-----------MGSGIAQLGVMDGLDVWLVDTDPDA   40 (297)
Q Consensus         3 ~~~~~V~iiG~G~-----------mG~~iA~~l~~~G~~V~~~d~~~~~   40 (297)
                      +.++||.|||+|.           .+...+..|.+.|+++.+++.|++.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            4578999999985           5677777899999999999999873

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.80  E-value=0.066  Score=42.03  Aligned_cols=34  Identities=24%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|-|.|+ +-+|.++|..|++.|++|.+.|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            68888988 77999999999999999999998653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.77  E-value=0.087  Score=41.82  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|...|..+++.|.+|.++|.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            689999999999999999999999999975

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=91.68  E-value=0.4  Score=36.73  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=58.1

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL-   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-   82 (297)
                      -++|.=||||. | .++..+++.|.+|+.+|.+++.++.+++.+.       +.+.          .++.+ ..+.+++ 
T Consensus        16 ~~rVLDiGcG~-G-~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~-------~~~~----------~~i~~~~~d~~~l~   76 (231)
T d1vl5a_          16 NEEVLDVATGG-G-HVANAFAPFVKKVVAFDLTEDILKVARAFIE-------GNGH----------QQVEYVQGDAEQMP   76 (231)
T ss_dssp             CCEEEEETCTT-C-HHHHHHGGGSSEEEEEESCHHHHHHHHHHHH-------HTTC----------CSEEEEECCC-CCC
T ss_pred             cCEEEEecccC-c-HHHHHHHHhCCEEEEEECCHHHHhhhhhccc-------cccc----------cccccccccccccc
Confidence            36899999995 4 3456678889999999999998887754432       1221          22322 2233322 


Q ss_pred             ---cCCcEEEEec-ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           83 ---HSADIIVEAI-VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ---~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                         ...|+|+..- .+-..-.+.+++++.+.++++..++
T Consensus        77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence               3468887542 1111114567888999998876443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.67  E-value=0.024  Score=40.14  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=27.5

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEE-EEeCCHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVW-LVDTDPDA   40 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~-~~d~~~~~   40 (297)
                      -+|.|+|+|.+|..++..+. ..||++. ++|-++++
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            48999999999999998654 4577765 67887753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.62  E-value=0.076  Score=40.76  Aligned_cols=30  Identities=27%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++.|++|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999964

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.60  E-value=0.35  Score=37.67  Aligned_cols=92  Identities=18%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD---   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~---   81 (297)
                      ++|.=||||. | .++..|++.|++|+.+|.|++.++.++++..       ..+.           ++++ ..|..+   
T Consensus        39 ~~vLDiGCG~-G-~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~-------~~~~-----------~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          39 DDYLDLACGT-G-NLTENLCPKFKNTWAVDLSQEMLSEAENKFR-------SQGL-----------KPRLACQDISNLNI   98 (246)
T ss_dssp             TEEEEETCTT-S-TTHHHHGGGSSEEEEECSCHHHHHHHHHHHH-------HTTC-----------CCEEECCCGGGCCC
T ss_pred             CeEEEEeCcC-C-HHHHHHHHhCCccEeeccchhhhhhcccccc-------ccCc-----------cceeeccchhhhcc
Confidence            5899999995 3 3677888999999999999998888755432       1221           1122 223332   


Q ss_pred             ccCCcEEEEec-----ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 LHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      -+..|+|+...     -...+-.+.+++++.++++++.+++
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            23469887421     1133345678899999998877655

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=0.06  Score=44.10  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~   39 (297)
                      ..|.|||+|.-|..-|..|++  .|++|+++|+++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            359999999999999999996  4999999998653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.34  E-value=0.064  Score=44.00  Aligned_cols=31  Identities=32%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      -|.|||+|.-|..-|..++++|.+|.+++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899999999999999999999999999875

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.34  E-value=0.49  Score=35.34  Aligned_cols=69  Identities=17%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407            6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDP-----DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN   78 (297)
Q Consensus         6 ~~V~iiG~--G~mG~~iA~~l~~~G~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~   78 (297)
                      .||++||=  -++..+++..+++-|.+|++..+..     +-++.+    ++..   ...|           ..++.+++
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~----~~~~---~~~~-----------~~~~~~~d   67 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQC----KKFA---EESG-----------AKLTLTED   67 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHH----HHHH---HHHT-----------CEEEEESC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHH----HHHh---hccC-----------CeEEEEeC
Confidence            48999995  4899999999999999999998732     222222    1111   1112           34577888


Q ss_pred             ccc-ccCCcEEEEec
Q 022407           79 LKD-LHSADIIVEAI   92 (297)
Q Consensus        79 ~~~-~~~aD~Vi~~v   92 (297)
                      +++ ++++|+|....
T Consensus        68 ~~eai~~aDvVyt~~   82 (185)
T d1dxha2          68 PKEAVKGVDFVHTDV   82 (185)
T ss_dssp             HHHHTTTCSEEEECC
T ss_pred             hhhccccccEEEeeh
Confidence            876 99999998755

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=0.059  Score=43.91  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=29.6

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      .+||.|.|+ |.+|+.++..|++.|+.|.+.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            368999988 999999999999999999988754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.28  E-value=0.65  Score=36.51  Aligned_cols=38  Identities=16%  Similarity=0.151  Sum_probs=30.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      ++|-|.|+ +-+|..+|..|++.|.+|.+.+++.+..+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~   44 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA   44 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence            56667777 579999999999999999888776655443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.98  Score=32.99  Aligned_cols=39  Identities=13%  Similarity=-0.020  Sum_probs=32.4

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|.|+ |.+|....+.+...|.+|+..++++++.+.+
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~   69 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA   69 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH
Confidence            68999966 5588877777777899999999999988766

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.25  Score=38.24  Aligned_cols=89  Identities=22%  Similarity=0.315  Sum_probs=55.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL---   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---   82 (297)
                      .+|.=||||. | .++..|++.|++|+.+|.+++.++.+++           ++.-          . ....+.+++   
T Consensus        44 ~~vLDiGcG~-G-~~~~~l~~~~~~v~giD~s~~~l~~a~~-----------~~~~----------~-~~~~~~~~l~~~   99 (246)
T d2avna1          44 CRVLDLGGGT-G-KWSLFLQERGFEVVLVDPSKEMLEVARE-----------KGVK----------N-VVEAKAEDLPFP   99 (246)
T ss_dssp             CEEEEETCTT-C-HHHHHHHTTTCEEEEEESCHHHHHHHHH-----------HTCS----------C-EEECCTTSCCSC
T ss_pred             CEEEEECCCC-c-hhcccccccceEEEEeeccccccccccc-----------cccc----------c-cccccccccccc
Confidence            5888999995 3 4666889999999999999998877632           2210          1 112222222   


Q ss_pred             -cCCcEEEEe--cccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           83 -HSADIIVEA--IVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 -~~aD~Vi~~--v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                       ..-|+|+..  +-+-..-...+++++.+.++++.+++.
T Consensus       100 ~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence             346877743  211000134578888888888776653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.96  E-value=0.1  Score=41.25  Aligned_cols=40  Identities=10%  Similarity=0.175  Sum_probs=33.7

Q ss_pred             CcEEEEECC-ChhHHHHHHHHH---HCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGV---MDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~---~~G~~V~~~d~~~~~~~~~   44 (297)
                      +++|.|-|+ .-+|.++|..|+   +.|+.|++.+|++++++.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            468988888 778999998886   5799999999999877654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.93  E-value=0.14  Score=41.57  Aligned_cols=105  Identities=12%  Similarity=0.182  Sum_probs=65.5

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCc-
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNL-   79 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-   79 (297)
                      ..++|.|||.|.-+  ++..+++. +. +|+++|++++-++.+++....... ..+            ..+++. ..|. 
T Consensus        80 ~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~------------~~r~~i~~~Da~  144 (290)
T d1xj5a_          80 NPKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GYE------------DPRVNLVIGDGV  144 (290)
T ss_dssp             CCCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGG------------STTEEEEESCHH
T ss_pred             CCcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc-ccc------------CCCcEEEEccHH
Confidence            45799999999755  45556654 43 799999999998887665432211 001            122222 2221 


Q ss_pred             ---ccc--cCCcEEEEecccCHH-----HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           80 ---KDL--HSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        80 ---~~~--~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                         ...  +.-|+||.-++++..     ...+.++.+.+.++++.+++.++.+.
T Consensus       145 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         145 AFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             HHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence               111  247999876554321     24567888999999999988776554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.82  E-value=0.89  Score=33.88  Aligned_cols=95  Identities=14%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC-cccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN-LKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-~~~~   82 (297)
                      .++|.=||||.=  .++..+++.+.+|+++|.++..++.+++.++.       .+. .       ..++++ ..| .+.+
T Consensus        53 ~~~VLDiGcG~G--~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~-------~~l-~-------~~~i~~~~~d~~~~~  115 (194)
T d1dusa_          53 DDDILDLGCGYG--VIGIALADEVKSTTMADINRRAIKLAKENIKL-------NNL-D-------NYDIRVVHSDLYENV  115 (194)
T ss_dssp             TCEEEEETCTTS--HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TTC-T-------TSCEEEEECSTTTTC
T ss_pred             CCeEEEEeecCC--hhHHHHHhhccccceeeeccccchhHHHHHHH-------hCC-c-------cceEEEEEcchhhhh
Confidence            468999999874  34556778888999999999988877544321       111 0       012222 222 2222


Q ss_pred             --cCCcEEEEeccc--CHHHHHHHHHHHHhhccCCeEE
Q 022407           83 --HSADIIVEAIVE--SEDVKKKLFSELDKITKASAIL  116 (297)
Q Consensus        83 --~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii  116 (297)
                        ...|+|+...|-  ..+....++..+.+.++++.++
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence              357988865442  2333456778888888877543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.77  E-value=0.5  Score=35.16  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc----
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK----   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~----   80 (297)
                      .+|.=||||.=..  +..+++.+.+|+.+|.+++.++.+++.+++       .|.         ..++++. .+..    
T Consensus        35 ~~VLDiGcGsG~~--s~~lA~~~~~V~avD~~~~~l~~a~~n~~~-------~gl---------~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTGGV--TLELAGRVRRVYAIDRNPEAISTTEMNLQR-------HGL---------GDNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTSHH--HHHHHTTSSEEEEEESCHHHHHHHHHHHHH-------TTC---------CTTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeEcc--cccccccceEEEEecCCHHHHHHHHHHHHH-------cCC---------CcceEEEECchhhccc
Confidence            5788899987444  445677778999999999998887655432       221         1233332 2222    


Q ss_pred             cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .....|.|+...+...  ...++..+.+.++++..++.+
T Consensus        97 ~~~~~D~v~~~~~~~~--~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGGE--LQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             TSCCEEEEEESCCTTC--HHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCcCEEEEeCcccc--chHHHHHHHHHhCcCCEEEEE
Confidence            2467888887654322  346778888888777655433

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.68  E-value=0.88  Score=33.62  Aligned_cols=39  Identities=23%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|.|+ |-+|....+.....|.+|+...+++++.+.+
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            36777766 9999877766777899999999999987665

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.54  E-value=0.13  Score=42.43  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=26.9

Q ss_pred             EEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .|.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            4667776 99999999999999999999985

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.26  Score=40.02  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-|  ++..+++.  .-+|+++|++++-++.+++.+.....      .+       .-.|+++. .|..
T Consensus        89 ~pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~------~~-------~d~rv~v~~~Da~  153 (295)
T d1inla_          89 NPKKVLIIGGGDGG--TLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC------GF-------DDPRAEIVIANGA  153 (295)
T ss_dssp             SCCEEEEEECTTCH--HHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG------GG-------GCTTEEEEESCHH
T ss_pred             CCceEEEecCCchH--HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc------cc-------cCCCcEEEhhhHH
Confidence            45799999999743  45566654  34799999999998887654432110      00       01222222 2221


Q ss_pred             c-c----cCCcEEEEecccCHH------HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 D-L----HSADIIVEAIVESED------VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-~----~~aD~Vi~~v~e~~~------~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      . +    +.-|+||.-.++...      ...+.++.+.+.+.++.+++.++.+.
T Consensus       154 ~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         154 EYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             HHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            1 2    347999976654321      13577888999999999888776553

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.13  Score=42.84  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             EEE-EEC-CChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMG-VVG-SGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~-iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ||+ |.| +|.+|+.++..|.+.||+|+++|+...
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            455 777 599999999999999999999998654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=90.47  E-value=0.34  Score=39.32  Aligned_cols=32  Identities=31%  Similarity=0.595  Sum_probs=25.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----CC-------cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD----GL-------DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~----G~-------~V~~~d~~   37 (297)
                      .||.|+|+|.-|.++|..+...    |.       +++++|+.
T Consensus        26 ~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          26 EKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            5899999999999999887653    42       58899874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.44  E-value=0.34  Score=36.01  Aligned_cols=39  Identities=18%  Similarity=0.074  Sum_probs=32.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ++|.|-|+ |-+|....+.....|.+|+....++++.+.+
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~   72 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL   72 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred             CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence            56999985 9999877766678899999999998887766

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.31  E-value=0.11  Score=40.94  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~   44 (297)
                      ++|.|-|+ +-+|..+|..|++.|+  .|.+..|+.++++++
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l   45 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL   45 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHH
Confidence            57777777 8899999999999996  577789998876554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.22  E-value=1.4  Score=34.99  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      -++|.=||||.=|  ++..+++ .|.+|+.+|.++++++.++++++       +.|.         ..++.. ..+..+.
T Consensus        53 g~~VLDiGCG~G~--~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~-------~~~l---------~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          53 GMTLLDIGCGWGT--TMRRAVERFDVNVIGLTLSKNQHARCEQVLA-------SIDT---------NRSRQVLLQGWEDF  114 (280)
T ss_dssp             TCEEEEESCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-------TSCC---------SSCEEEEESCGGGC
T ss_pred             CCEEEEecCCchH--HHHHHHHhCceeEEEecchHHHHHHHHHHHH-------hhcc---------ccchhhhhhhhhhh
Confidence            3689999999744  5556664 49999999999999887765433       2222         112222 2344443


Q ss_pred             -cCCcEEEEe-cccCH--HHHHHHHHHHHhhccCCeEEee
Q 022407           83 -HSADIIVEA-IVESE--DVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        83 -~~aD~Vi~~-v~e~~--~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                       ..-|.|+.. +.+-.  .-...+|+++.+.++|+..++.
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEE
Confidence             345666532 11211  1246889999999988776553

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.17  E-value=0.12  Score=42.47  Aligned_cols=104  Identities=12%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-+  ++..+++.  ..+|++++++++-++.+++.+...     ..+.+.       -.++++. .|..
T Consensus        77 ~pk~VLiiG~G~G~--~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~-----~~~~~~-------d~rv~i~~~Da~  142 (312)
T d1uira_          77 EPKRVLIVGGGEGA--TLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW-----HQGAFD-------DPRAVLVIDDAR  142 (312)
T ss_dssp             CCCEEEEEECTTSH--HHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHH-----HTTGGG-------CTTEEEEESCHH
T ss_pred             CcceEEEeCCCchH--HHHHHHhcCCcceEEEecCCHHHHHHHHhcCccc-----ccCccC-------CCceEEEEchHH
Confidence            45799999999643  44445443  358999999999888776543221     111110       1222322 2321


Q ss_pred             c-----ccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEeecCC
Q 022407           81 D-----LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTS  121 (297)
Q Consensus        81 ~-----~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts  121 (297)
                      .     -+.-|+||.-.++..        -...+.++.+.+.++++.+++.+++
T Consensus       143 ~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         143 AYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence            1     135799987654321        1135678889999999888876553

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.33  Score=30.73  Aligned_cols=40  Identities=23%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      -++|.|.|+ |.+|....+.+...|++|+....++++.+.+
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            357888877 9999888877788999999999999887765

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.99  E-value=0.75  Score=36.98  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      ++|+|-|.|++|...|..|.+.|..|+.++
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vs   66 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVG   66 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            689999999999999999999999987654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.82  E-value=0.18  Score=40.34  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             cEEEEECCCh--hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc-
Q 022407            6 KVMGVVGSGQ--MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G~--mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-   81 (297)
                      ++|.=+|+|.  +...+|..+...| +|+.+|.+++.++.+++.++....     +.         ..++.+ ..|..+ 
T Consensus        98 ~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~-----~~---------~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          98 ARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYG-----QP---------PDNWRLVVSDLADS  162 (264)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHT-----SC---------CTTEEEECSCGGGC
T ss_pred             CEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhcc-----CC---------CceEEEEecccccc
Confidence            5788888865  3334443333344 799999999999888766554311     11         112222 222221 


Q ss_pred             ---ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           82 ---LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 ---~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                         -...|.||.-+|+...    ++.++.+.++++..++.-+
T Consensus       163 ~~~~~~fDaV~ldlp~P~~----~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         163 ELPDGSVDRAVLDMLAPWE----VLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCCTTCEEEEEEESSCGGG----GHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCCcceEEEecCCHHH----HHHHHHhccCCCCEEEEEe
Confidence               2457999998988664    5566777888877666433

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.75  E-value=0.15  Score=40.35  Aligned_cols=37  Identities=19%  Similarity=-0.107  Sum_probs=31.2

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         8 V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      ..|-|+ +-+|.++|..|++.|++|.+.|++.+.++++
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            445677 5599999999999999999999998877654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.71  E-value=1.9  Score=36.21  Aligned_cols=106  Identities=14%  Similarity=0.065  Sum_probs=61.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC------
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN------   78 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~------   78 (297)
                      ++|.=||||.=.. ........|. +|+.+|.++..++.+++..+.........|.-..      ...+....+      
T Consensus       218 d~fLDLGCG~G~~-vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~------~~~~~~~~~f~~~~~  290 (406)
T d1u2za_         218 DTFMDLGSGVGNC-VVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN------NVEFSLKKSFVDNNR  290 (406)
T ss_dssp             CEEEEESCTTSHH-HHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC------CEEEEESSCSTTCHH
T ss_pred             CEEEeCCCCCcHH-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc------cceeeeeechhhccc
Confidence            5788899997333 3333334454 7999999999998887776655433332221100      000111111      


Q ss_pred             cc-cccCCcEEEEec-ccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           79 LK-DLHSADIIVEAI-VESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        79 ~~-~~~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                      .. .+..||+|+... .-..+ ....+.++.+.+++++.|++.
T Consensus       291 ~d~~~~~adVV~inn~~f~~~-l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         291 VAELIPQCDVILVNNFLFDED-LNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHGGGCSEEEECCTTCCHH-HHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccceEEEEecccCchH-HHHHHHHHHHhcCCCcEEEEe
Confidence            11 257789888632 22333 345667788888998877654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=89.68  E-value=0.19  Score=39.87  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS   84 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~   84 (297)
                      +||++||.  +  +....+.+.|.+++++|+++..                  |.             ......+. +..
T Consensus       123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~------------------gd-------------~p~~~~~~lLp~  167 (251)
T d2h1qa1         123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE------------------GD-------------YPLPASEFILPE  167 (251)
T ss_dssp             SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT------------------TC-------------EEGGGHHHHGGG
T ss_pred             CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC------------------CC-------------CCchHHHHhhhc
Confidence            69999975  4  5666678889999999998641                  11             11222233 789


Q ss_pred             CcEEEEecccCHHHHHHHHHHHHhhccCCe-EEeecCC
Q 022407           85 ADIIVEAIVESEDVKKKLFSELDKITKASA-ILASNTS  121 (297)
Q Consensus        85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~-ii~s~ts  121 (297)
                      ||+||.+-   ..+....+..|.+++++.. +++...|
T Consensus       168 aD~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~GPS  202 (251)
T d2h1qa1         168 CDYVYITC---ASVVDKTLPRLLELSRNARRITLVGPG  202 (251)
T ss_dssp             CSEEEEET---HHHHHTCHHHHHHHTTTSSEEEEESTT
T ss_pred             CCEEEEEe---chhhcCCHHHHHHhCCcCCEEEEECCC
Confidence            99999876   3445566677778887653 5443333

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.58  E-value=0.3  Score=35.61  Aligned_cols=74  Identities=14%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDAL-VRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||++||=  .++-.++...+++-|.++++..+..-.. .......+..   ..+           ....+..++++++ 
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~---~~~-----------~~~~i~~~~d~~~a   69 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEI---VKE-----------TDGSVSFTSNLEEA   69 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHH---HHH-----------HCCEEEEESCHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHH---Hhh-----------cCCceEEEecHHHh
Confidence            58999994  4788999999999999999987643111 0111111110   111           1245678888877 


Q ss_pred             ccCCcEEEEecc
Q 022407           82 LHSADIIVEAIV   93 (297)
Q Consensus        82 ~~~aD~Vi~~v~   93 (297)
                      ++++|+|.....
T Consensus        70 i~~aDviyt~~~   81 (161)
T d1vlva2          70 LAGADVVYTDVW   81 (161)
T ss_dssp             HTTCSEEEECCC
T ss_pred             hhhhhheeccce
Confidence            899999997653

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=89.42  E-value=0.5  Score=34.10  Aligned_cols=60  Identities=10%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             cEEEEECC---ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS---GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~---G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .+|++||=   +++..+++..+++-|.+|++..+..-..+               .            ..+....++++ 
T Consensus         4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---------------~------------~~~~~~~~~~ea   56 (151)
T d2at2a2           4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---------------E------------NTFGTYVSMDEA   56 (151)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---------------c------------cceeEEEechhc
Confidence            58999998   57999999999999999988876431110               0            12345566665 


Q ss_pred             ccCCcEEEEec
Q 022407           82 LHSADIIVEAI   92 (297)
Q Consensus        82 ~~~aD~Vi~~v   92 (297)
                      ++++|+|....
T Consensus        57 ~~~aDviy~~r   67 (151)
T d2at2a2          57 VESSDVVMLLR   67 (151)
T ss_pred             cccCceeeeeE
Confidence            89999987643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.2  Score=40.54  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||+|.-+  ++..+.+.  ..+|+++|.+++-++.+++....... ..+            -.|+++. .|..
T Consensus        78 ~pk~vLiiGgG~G~--~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~------------d~rv~i~~~Da~  142 (285)
T d2o07a1          78 NPRKVLIIGGGDGG--VLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-GYS------------SSKLTLHVGDGF  142 (285)
T ss_dssp             SCCEEEEEECTTSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGG------------CTTEEEEESCHH
T ss_pred             CcCeEEEeCCCchH--HHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-ccC------------CCCceEEEccHH
Confidence            45799999999643  55666654  45899999999998887665432110 001            1223332 2221


Q ss_pred             c-c----cCCcEEEEecccCHHH-----HHHHHHHHHhhccCCeEEeecCCC
Q 022407           81 D-L----HSADIIVEAIVESEDV-----KKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        81 ~-~----~~aD~Vi~~v~e~~~~-----k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      . +    +.-|+||.-.+++...     .++.++.+.+.++++.+++.++.+
T Consensus       143 ~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         143 EFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            1 2    3469999766553322     335677788899998888876544

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.51  Score=35.86  Aligned_cols=29  Identities=14%  Similarity=0.046  Sum_probs=26.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||.|+|.+.+|......|.++|++|..+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V   29 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAI   29 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence            58999999999999999999999999744

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.28  E-value=0.3  Score=39.24  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             cEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407            6 KVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALV   42 (297)
Q Consensus         6 ~~V~iiG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~   42 (297)
                      +++.|.|++   -+|.++|..|++.|.+|.+.++++....
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~   48 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI   48 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence            567777985   4999999999999999999999876443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.14  E-value=0.2  Score=41.93  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=27.3

Q ss_pred             cEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~~~d~   36 (297)
                      |||-|.|+ |.+|+.++..|++ .||+|+++|.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            58999877 9999999999874 8999999984

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.15  Score=45.14  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~   38 (297)
                      .+|.|||+|.+|+-++.+|+.+|. +++++|.+.
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            589999999999999999999997 799998754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.99  E-value=0.54  Score=37.61  Aligned_cols=107  Identities=15%  Similarity=0.233  Sum_probs=62.4

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCceEEe-cC
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAMGTDAPRRLRCT-SN   78 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~-~~   78 (297)
                      ..++|.|||+|.-+.  +..+++.+ -+|+++|++++-++.+++....   .++....          ..-.|+++. .|
T Consensus        72 ~p~~vLiiG~G~G~~--~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~----------~~d~rv~i~~~D  139 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGT--VREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN----------GKHEKAKLTIGD  139 (276)
T ss_dssp             CCCEEEEEECTTSHH--HHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHT----------TCCSSEEEEESC
T ss_pred             CCceEEEecCCchHH--HHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhc----------cCCCCceEEECh
Confidence            357999999997544  34444444 3799999999988877543210   0000000          011233332 22


Q ss_pred             cc----cccCCcEEEEecccCHHH-----HHHHHHHHHhhccCCeEEeecCCC
Q 022407           79 LK----DLHSADIIVEAIVESEDV-----KKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        79 ~~----~~~~aD~Vi~~v~e~~~~-----k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                      ..    .-+.-|+||.-.+++...     .++.++.+.+.++++.+++.++.+
T Consensus       140 a~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         140 GFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            11    124579999766554322     246788899999998888866543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.94  E-value=0.21  Score=37.96  Aligned_cols=32  Identities=13%  Similarity=0.093  Sum_probs=26.9

Q ss_pred             CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeC
Q 022407            5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDT   36 (297)
Q Consensus         5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~   36 (297)
                      .+||.|+|+ |.+|+.++..|.+.|+.+.+...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~   34 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAP   34 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE
Confidence            379999999 99999999999999995544443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=88.92  E-value=1.2  Score=35.22  Aligned_cols=95  Identities=19%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      -++|.=||||.=+  ++..|++. |.+|+.+|.++..++.+++....       .|.         ..++++ ..|..++
T Consensus        68 ~~~vLDiGcG~G~--~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~-------~gl---------~~~v~~~~~d~~~l  129 (282)
T d2o57a1          68 QAKGLDLGAGYGG--AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ-------AGL---------ADNITVKYGSFLEI  129 (282)
T ss_dssp             TCEEEEETCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-------HTC---------TTTEEEEECCTTSC
T ss_pred             CCEEEEeCCCCcH--HHhhhhccCCcEEEEEeccchhhhhhhccccc-------ccc---------cccccccccccccc
Confidence            3689999999643  45556654 88999999999988877554332       121         122332 2233322


Q ss_pred             ----cCCcEEEEec-ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           83 ----HSADIIVEAI-VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        83 ----~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                          ...|+|+..- ..-..-+..+++++.+.++++..++
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~  169 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA  169 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence                3468887532 1111124568889999998876544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.67  E-value=0.47  Score=37.51  Aligned_cols=28  Identities=21%  Similarity=0.198  Sum_probs=25.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWL   33 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~   33 (297)
                      ++|+|-|.|++|...|..|.+.|..|+.
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~Gakvva   64 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAELGAKAVT   64 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence            6899999999999999999999998773

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.62  E-value=0.14  Score=34.77  Aligned_cols=33  Identities=9%  Similarity=-0.077  Sum_probs=28.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      ++|.|||+|.-|..+|..|++.+-+|++..+..
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            689999999999999999998887777665543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.81  Score=36.98  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc--
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD--   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--   81 (297)
                      ++|.-|||| .|. ++..++++|. +|+.+|.++.... +.+.+       .+.+..         .++.+. .+..+  
T Consensus        37 ~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~-------~~~~~~---------~~i~~~~~~~~~l~   97 (311)
T d2fyta1          37 KVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQSEILYQ-AMDII-------RLNKLE---------DTITLIKGKIEEVH   97 (311)
T ss_dssp             CEEEEETCT-TSH-HHHHHHHTTCSEEEEEESSTHHHH-HHHHH-------HHTTCT---------TTEEEEESCTTTSC
T ss_pred             CEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCHHHHHH-HHHHH-------HHhCCC---------ccceEEEeeHHHhc
Confidence            579999999 453 6777888885 7999999976432 22211       222221         223332 22222  


Q ss_pred             --ccCCcEEEEeccc----CHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 --LHSADIIVEAIVE----SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 --~~~aD~Vi~~v~e----~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ....|+|+.....    .......++....++++++..++
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence              3568888864322    22234556666677787777655

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.15  Score=41.86  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..++++|.+|++++..
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            889999999999999999999999999763

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.37  E-value=0.19  Score=41.80  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=26.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcE-EEEeC
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDV-WLVDT   36 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V-~~~d~   36 (297)
                      |||.|.|+ |.+|+.++..|++.|++| .++|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            58999987 999999999999999984 55665

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=88.15  E-value=0.19  Score=40.36  Aligned_cols=105  Identities=21%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      ..++|.|||.|.-+  ++..+++. + -+|+++|++++-++.+++.....      .+...       -.|+.. ..|..
T Consensus        75 ~p~~vLiiGgG~G~--~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~-------d~r~~i~~~D~~  139 (274)
T d1iy9a_          75 NPEHVLVVGGGDGG--VIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLD-------DPRVDVQVDDGF  139 (274)
T ss_dssp             SCCEEEEESCTTCH--HHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTT-------STTEEEEESCSH
T ss_pred             CcceEEecCCCCcH--HHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------ccccc-------CCCeEEEechHH
Confidence            35799999999643  45555553 3 48999999999888776543211      12111       122332 22221


Q ss_pred             c-c----cCCcEEEEecccCHH-----HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 D-L----HSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-~----~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      . +    +.-|+||.-.+++..     ..++.++.+.+.++++.+++.++.+.
T Consensus       140 ~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         140 MHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             HHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            1 2    347999876654321     14577888999999999988776543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.13  E-value=0.14  Score=41.97  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |.|||+|.-|..-|..++++|.+|.+++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            8999999999999999999999999998743

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=88.12  E-value=0.23  Score=39.20  Aligned_cols=31  Identities=23%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +.|||+|.-|...|..+++.|.+|++++..+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8899999999999999999999999999754

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.02  E-value=0.37  Score=39.55  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             EEEEE-CCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            7 VMGVV-GSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         7 ~V~ii-G~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      ||++| |+|   -+|.++|..|++.|.+|.+.+++......
T Consensus         3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~   43 (329)
T d1uh5a_           3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIF   43 (329)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHH
T ss_pred             cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhh
Confidence            67766 865   69999999999999999999988765443

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.97  E-value=0.31  Score=35.35  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      +||.|||.|..|.-.|..+.+.|. .|+++-|.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            689999999999999999999886 47777654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.89  E-value=0.3  Score=36.17  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      ++|.|||-+. +|.++|..|++.|..|+..+.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            6899999765 5999999999999999999865

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=5.3  Score=32.21  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=62.6

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc---
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK---   80 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---   80 (297)
                      ++|.=||||.=...+ ......|. +|+.+|.+++.++.+.+..+....+....|.-        ..++++. .|..   
T Consensus       153 ~~vlD~GcG~G~~~~-~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~--------~~~i~~~~gd~~~~~  223 (328)
T d1nw3a_         153 DLFVDLGSGVGQVVL-QVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--------HAEYTLERGDFLSEE  223 (328)
T ss_dssp             CEEEEETCTTSHHHH-HHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC--------CCCEEEEECCTTSHH
T ss_pred             CEEEEcCCCCCHHHH-HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc--------CCceEEEECcccccc
Confidence            578899999743333 22344565 69999999999888877766554444333321        1223332 2222   


Q ss_pred             --c-ccCCcEEEEeccc-CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           81 --D-LHSADIIVEAIVE-SEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        81 --~-~~~aD~Vi~~v~e-~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                        + ..+||+|+..... ... ....+.++...+++++.|++..
T Consensus       224 ~~~~~~~advi~~~~~~f~~~-~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         224 WRERIANTSVIFVNNFAFGPE-VDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHCSEEEECCTTTCHH-HHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccCcceEEEEcceecchH-HHHHHHHHHHhCCCCcEEEEec
Confidence              1 4568888853322 233 3455667777888888777544

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.72  E-value=0.53  Score=38.12  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=27.4

Q ss_pred             EEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            7 VMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         7 ~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |+++| |+ +-+|.++|..|++.|++|.+.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            45555 66 77999999999999999999987643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.64  E-value=0.47  Score=38.65  Aligned_cols=105  Identities=18%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             CCcEEEEECCChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCcc
Q 022407            4 KMKVMGVVGSGQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLK   80 (297)
Q Consensus         4 ~~~~V~iiG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~   80 (297)
                      ..++|.|||.|.-|  ++..+++. + -+|++++++++-++.+++....          ....   -.-.++++. .|..
T Consensus       106 ~pk~VLIiGgG~G~--~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~----------~~~~---~~dprv~i~i~Da~  170 (312)
T d2b2ca1         106 DPKRVLIIGGGDGG--ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG----------MSCG---FSHPKLDLFCGDGF  170 (312)
T ss_dssp             SCCEEEEESCTTSH--HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT----------TSGG---GGCTTEEEECSCHH
T ss_pred             CCCeEEEeCCCchH--HHHHHHHcCCcceEEEEcccHHHHHHHHhhchh----------hccc---cCCCCeEEEEchHH
Confidence            45799999999744  55566654 3 4799999999988877443210          0000   011233332 2221


Q ss_pred             c-----ccCCcEEEEecccCHH-----HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407           81 D-----LHSADIIVEAIVESED-----VKKKLFSELDKITKASAILASNTSSI  123 (297)
Q Consensus        81 ~-----~~~aD~Vi~~v~e~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~~  123 (297)
                      .     -+.-|+||.-++++..     ..++.++.+.+.++++.++++++.+.
T Consensus       171 ~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         171 EFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             HHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            1     2347999976654332     24566778889999999988776544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.05  E-value=1.4  Score=35.62  Aligned_cols=93  Identities=18%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc--
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD--   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--   81 (297)
                      ++|.-||+|. | .++..++++| .+|+.+|.++.. ..+.+.+       ...+.         ..++.+. .+..+  
T Consensus        35 ~~VLDiGcG~-G-~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~-------~~n~~---------~~~v~~~~~~~~~~~   95 (316)
T d1oria_          35 KVVLDVGSGT-G-ILCMFAAKAGARKVIGIECSSIS-DYAVKIV-------KANKL---------DHVVTIIKGKVEEVE   95 (316)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCSEEEEEECSTTH-HHHHHHH-------HHTTC---------TTTEEEEESCTTTCC
T ss_pred             CEEEEEecCC-c-HHHHHHHHhCCCEEEEEcCcHHH-hhhhhHH-------HHhCC---------ccccceEeccHHHcc
Confidence            5789999997 5 3677788888 579999998753 3332221       12221         1233332 22222  


Q ss_pred             --ccCCcEEEEeccc----CHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 --LHSADIIVEAIVE----SEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 --~~~aD~Vi~~v~e----~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                        ....|+|+.....    .......++..+.++++++..++
T Consensus        96 ~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          96 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence              2457887753321    22235567788888888887665

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=86.89  E-value=1.1  Score=35.92  Aligned_cols=32  Identities=38%  Similarity=0.678  Sum_probs=26.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----C-------CcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD----G-------LDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~----G-------~~V~~~d~~   37 (297)
                      .||.|.|+|.-|.++|..++.+    |       .+++++|+.
T Consensus        26 ~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          26 HTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            5899999999999999987643    3       378999975

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=1.5  Score=33.69  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=56.8

Q ss_pred             CcEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc-
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD-   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-   81 (297)
                      -++|.=||||.=+  ++..+++ .|.+|+.+|.+++.++.+++..+       +.|.         ..++.+. .|..+ 
T Consensus        34 g~~VLDiGCG~G~--~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~-------~~gl---------~~~v~~~~~d~~~~   95 (245)
T d1nkva_          34 GTRILDLGSGSGE--MLCTWARDHGITGTGIDMSSLFTAQAKRRAE-------ELGV---------SERVHFIHNDAAGY   95 (245)
T ss_dssp             TCEEEEETCTTCH--HHHHHHHHTCCEEEEEESCHHHHHHHHHHHH-------HTTC---------TTTEEEEESCCTTC
T ss_pred             CCEEEEEcCCCCH--HHHHHHHhcCCEEEEEecccchhhHHHHHHH-------Hhhc---------cccchhhhhHHhhc
Confidence            3689999999843  4445554 68899999999998887755332       2221         1223322 23332 


Q ss_pred             c--cCCcEEEEec-ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 L--HSADIIVEAI-VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ~--~~aD~Vi~~v-~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .  ...|+|+..- ..-..-+..+++++.+.++|+..++
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence            1  3468777432 1111114578888888888876554

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.51  Score=35.14  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             cEEEEECCC--hhHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSG--QMGSGIAQLGVMDGLDVWLVDTDPDAL-VRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G--~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .+|++||=|  +|..+++..++.-|.+++++-+..-.. +...+.++..   ....|           ..+..+++.++ 
T Consensus         6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~~g-----------~~~~~~~d~~~a   71 (183)
T d1duvg2           6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRAL---AQQNG-----------GNITLTEDVAKG   71 (183)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHH---HHHTT-----------CEEEEESCHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHH---HHhcC-----------CceEEEechhhc
Confidence            489999965  688999999999999999997632211 1111111111   12222           34567888876 


Q ss_pred             ccCCcEEEEecc
Q 022407           82 LHSADIIVEAIV   93 (297)
Q Consensus        82 ~~~aD~Vi~~v~   93 (297)
                      ++++|+|...+-
T Consensus        72 ~~~aDvvyt~~w   83 (183)
T d1duvg2          72 VEGADFIYTDVW   83 (183)
T ss_dssp             HTTCSEEEECCS
T ss_pred             cccCCEEEEEeh
Confidence            899999987553

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.48  E-value=0.34  Score=37.39  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~   37 (297)
                      +||.|+|+|.-|.++|..+...|. +++++|+.
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            689999999999999999888776 78999985

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.43  E-value=1.8  Score=33.85  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD-L   82 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-~   82 (297)
                      ++|.=+|+|.=+.+++..-+ ..+-.|+.+|++++.++.+++.+++       .+.         ..++.+. .|..+ +
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~-------~~~---------~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-------FYD---------IGNVRTSRSDIADFI  150 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-------TSC---------CTTEEEECSCTTTCC
T ss_pred             CEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-------hcC---------CCceEEEEeeeeccc
Confidence            68999999875443332211 2334899999999988887654432       111         1223322 23333 2


Q ss_pred             --cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           83 --HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        83 --~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                        ...|.|+.-+|+..    .++.++.+.++++..+++.
T Consensus       151 ~~~~fD~V~ld~p~p~----~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         151 SDQMYDAVIADIPDPW----NHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             CSCCEEEEEECCSCGG----GSHHHHHHTEEEEEEEEEE
T ss_pred             ccceeeeeeecCCchH----HHHHHHHHhcCCCceEEEE
Confidence              34799998888765    3566677778887776643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=86.43  E-value=0.29  Score=41.26  Aligned_cols=31  Identities=16%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~   38 (297)
                      +.|||+|.-|+.+|..|+++| ++|.++++-+
T Consensus        27 ~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          27 YIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            779999999999999999988 7999998653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.39  E-value=0.53  Score=37.69  Aligned_cols=42  Identities=26%  Similarity=0.173  Sum_probs=34.3

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI   48 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~   48 (297)
                      .++|.=||||. | .++..|++.|++|+.+|.+++.++.+++..
T Consensus        57 ~~~vLD~GcG~-G-~~~~~la~~g~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          57 CHRVLDVACGT-G-VDSIMLVEEGFSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             CCEEEESSCTT-S-HHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEecCCC-c-HHHHHHHHcCCeeeeccCchHHHHHHHHHH
Confidence            35899999997 3 366778899999999999999988776544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.21  E-value=0.28  Score=38.03  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=26.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC---CcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G---~~V~~~d~~   37 (297)
                      .||.|||+|.-|..-|...++.|   ++|.+++..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            58999999999988887776654   679999964

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=86.10  E-value=2.1  Score=31.53  Aligned_cols=38  Identities=21%  Similarity=0.188  Sum_probs=26.9

Q ss_pred             cEEEEE--CCChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407            6 KVMGVV--GSGQMGSGIAQLGVMDGLDVWLVDTDPDALVR   43 (297)
Q Consensus         6 ~~V~ii--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   43 (297)
                      ++|.|+  |.|.+|....+.....|.+|+..-++++..+.
T Consensus        30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~   69 (189)
T d1gu7a2          30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE   69 (189)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred             CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccch
Confidence            468888  55778876666666679999887766555443

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.95  E-value=0.4  Score=38.67  Aligned_cols=32  Identities=38%  Similarity=0.701  Sum_probs=26.2

Q ss_pred             cEEEEECCChhHHHHHHHHHHC----CC-------cEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD----GL-------DVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~----G~-------~V~~~d~~   37 (297)
                      .||.|.|+|.-|.++|..+..+    |.       +++++|+.
T Consensus        26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~   68 (294)
T d1pj3a1          26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKY   68 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETT
T ss_pred             cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCC
Confidence            5899999999999999986654    43       59999974

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=85.87  E-value=0.13  Score=42.11  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.9

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVW   32 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~   32 (297)
                      |||.|.|+ |.+|+.++..|++.|++|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~   28 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV   28 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence            58999977 9999999999999998654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.69  E-value=2.7  Score=33.38  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc-c
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL-H   83 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-~   83 (297)
                      ++|.=||||.-|.++= ...+.|.+|+.++.++++++.+++++.       +.|.         ..++++ ..|..++ .
T Consensus        64 ~~VLDiGCG~G~~a~~-~a~~~g~~v~git~s~~Q~~~a~~~~~-------~~g~---------~~~v~~~~~d~~~~~~  126 (285)
T d1kpga_          64 MTLLDVGCGWGATMMR-AVEKYDVNVVGLTLSKNQANHVQQLVA-------NSEN---------LRSKRVLLAGWEQFDE  126 (285)
T ss_dssp             CEEEEETCTTSHHHHH-HHHHHCCEEEEEESCHHHHHHHHHHHH-------TCCC---------CSCEEEEESCGGGCCC
T ss_pred             CEEEEecCcchHHHHH-HHhcCCcceEEEeccHHHHHHHHHHHH-------hhhh---------hhhhHHHHhhhhcccc
Confidence            6899999998654332 233568999999999999888765543       2232         123332 2233332 2


Q ss_pred             CCcEEEEe-cccCH--HHHHHHHHHHHhhccCCeEEe
Q 022407           84 SADIIVEA-IVESE--DVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        84 ~aD~Vi~~-v~e~~--~~k~~~~~~l~~~~~~~~ii~  117 (297)
                      .-|-|+-. ..|-.  .-.+.+++++...++++..++
T Consensus       127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~  163 (285)
T d1kpga_         127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVML  163 (285)
T ss_dssp             CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEE
Confidence            34544421 11211  114678999999998876554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.51  E-value=0.79  Score=33.52  Aligned_cols=39  Identities=21%  Similarity=0.156  Sum_probs=32.0

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA   44 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~   44 (297)
                      .+|.|-|+ |-+|....+.....|.+|+...+++++.+.+
T Consensus        25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            35888885 9999877766667899999999998887766

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.38  E-value=0.27  Score=38.92  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=28.9

Q ss_pred             CcEEEEECCChhHHH-----HHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSG-----IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~-----iA~~l~~~G~~V~~~d~~~~   39 (297)
                      +++|+|.|=|-.|..     +|..|++.|++|.++|.|++
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            368999998887765     45678889999999999875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.99  E-value=0.43  Score=37.06  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |.|||+|.-|..-|..+++.|.+|.++..+.+
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~~   36 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   36 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            77999999999999999999999999987753

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=0.42  Score=37.93  Aligned_cols=29  Identities=34%  Similarity=0.533  Sum_probs=25.0

Q ss_pred             EEEECC-ChhHHHHHHHHHHCCC-cEEEEeC
Q 022407            8 MGVVGS-GQMGSGIAQLGVMDGL-DVWLVDT   36 (297)
Q Consensus         8 V~iiG~-G~mG~~iA~~l~~~G~-~V~~~d~   36 (297)
                      |.|.|+ |.+|+.++..|++.|+ +|+++|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            567766 9999999999999996 7999983

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.74  E-value=0.31  Score=39.04  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=29.7

Q ss_pred             CcEEEEECCChhHHH-----HHHHHHHCCCcEEEEeCCHH
Q 022407            5 MKVMGVVGSGQMGSG-----IAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~-----iA~~l~~~G~~V~~~d~~~~   39 (297)
                      |++|+|-|=|-+|..     +|..|++.|++|.++|.|++
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            468999888888876     57778999999999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=84.68  E-value=3.6  Score=31.61  Aligned_cols=95  Identities=9%  Similarity=0.063  Sum_probs=58.4

Q ss_pred             CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCc-cc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNL-KD   81 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~~   81 (297)
                      -++|.=||||. |. .+..+++.|. +|+.+|.+++.++.++++..       +.+.         ..++.+ ..|. ..
T Consensus        25 ~~~VLDlGCG~-G~-~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~-------~~~~---------~~~v~f~~~D~~~~   86 (252)
T d1ri5a_          25 GDSVLDLGCGK-GG-DLLKYERAGIGEYYGVDIAEVSINDARVRAR-------NMKR---------RFKVFFRAQDSYGR   86 (252)
T ss_dssp             TCEEEEETCTT-TT-THHHHHHHTCSEEEEEESCHHHHHHHHHHHH-------TSCC---------SSEEEEEESCTTTS
T ss_pred             cCEEEEecccC-cH-HHHHHHHcCCCeEEEecCCHHHHHHHHHHHH-------hcCC---------CcceEEEEcchhhh
Confidence            36899999998 43 3456677676 79999999999888755432       1111         011221 1121 11


Q ss_pred             ----ccCCcEEEEec-----ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407           82 ----LHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILA  117 (297)
Q Consensus        82 ----~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~  117 (297)
                          -...|+|+..-     +++.+-...++.++.+.++++.+++
T Consensus        87 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i  131 (252)
T d1ri5a_          87 HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI  131 (252)
T ss_dssp             CCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEE
Confidence                23478876432     3444556678899999988877654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.63  E-value=3.6  Score=32.76  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             CcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDL   82 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~   82 (297)
                      -++|.=||||.=|  ++..++ +.|.+|+.++.++++++.++++++       +.|..         .++.+ ..|....
T Consensus        62 G~~VLDiGCG~G~--~~~~~a~~~g~~v~git~s~~q~~~a~~~~~-------~~~l~---------~~v~~~~~d~~~~  123 (291)
T d1kpia_          62 GMTLLDIGCGWGS--TMRHAVAEYDVNVIGLTLSENQYAHDKAMFD-------EVDSP---------RRKEVRIQGWEEF  123 (291)
T ss_dssp             TCEEEEETCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-------HSCCS---------SCEEEEECCGGGC
T ss_pred             CCEEEEecCcchH--HHHHHHHhcCcceeeccchHHHHHHHHHHHH-------hhccc---------hhhhhhhhccccc
Confidence            3689999999744  344544 569999999999999887765543       23321         12222 1233232


Q ss_pred             -cCCcEEEE-----ecccC-----HHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407           83 -HSADIIVE-----AIVES-----EDVKKKLFSELDKITKASAILASNTSS  122 (297)
Q Consensus        83 -~~aD~Vi~-----~v~e~-----~~~k~~~~~~l~~~~~~~~ii~s~ts~  122 (297)
                       ..-|.|+-     .+++.     ..-.+.+|+++.+.++|+..++..+.+
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence             34676652     22321     123468899999999998866644433

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=83.99  E-value=0.52  Score=34.66  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEe
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      +||+|=|.|++|+.+.+.+...+++|..++
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            489999999999999998888899988775

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=83.24  E-value=0.6  Score=36.57  Aligned_cols=36  Identities=25%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCc-EEEEeCCHHHH
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLD-VWLVDTDPDAL   41 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~-V~~~d~~~~~~   41 (297)
                      .+|.|.|+ |-+|..+|..|++.|.. |.++.|+....
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~   47 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDA   47 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCH
Confidence            46778885 88999999999999994 88888875433

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.22  E-value=0.43  Score=36.43  Aligned_cols=32  Identities=16%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~   37 (297)
                      +||+|||+|.-|..+|..+++++.+++..-++
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            79999999999999999999999887766544

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.17  E-value=0.5  Score=38.70  Aligned_cols=30  Identities=33%  Similarity=0.509  Sum_probs=25.9

Q ss_pred             EEEECCChhHHHHHHHHHH----CCCcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVM----DGLDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~----~G~~V~~~d~~   37 (297)
                      |.|||+|.-|..-|..+++    +|.+|.+++..
T Consensus        24 VlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            8999999999888887764    79999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=83.05  E-value=0.43  Score=40.01  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=27.0

Q ss_pred             EEEECCChhHHHHHHHHHHCC-CcEEEEeCC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTD   37 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~   37 (297)
                      +-|||+|.-|+.+|..|++++ ++|.+.++-
T Consensus        20 ~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG   50 (385)
T d1cf3a1          20 YIIAGGGLTGLTTAARLTENPNISVLVIESG   50 (385)
T ss_dssp             EEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence            679999999999999999876 899999864

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.98  E-value=0.83  Score=29.71  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      |||.|||.|---.+||..|.+..++|+++--|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            589999999999999999999999998884443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.63  E-value=0.49  Score=32.90  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD   39 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~   39 (297)
                      ++|+|||.|.-+.-.|..|++.+-+|+++-|.++
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            6899999999999999999999999999987653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=82.59  E-value=0.23  Score=39.49  Aligned_cols=29  Identities=21%  Similarity=0.107  Sum_probs=24.6

Q ss_pred             cEEEEECC-ChhHHHHHHHHHHCCCcEEEE
Q 022407            6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLV   34 (297)
Q Consensus         6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~   34 (297)
                      |||.|.|+ |.+|+.++..|.+.|+.|.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~   30 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALD   30 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence            58999997 999999999999999755543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=82.36  E-value=0.43  Score=39.46  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=27.1

Q ss_pred             EEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP   38 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~   38 (297)
                      +.|||+|.-|+.+|..|+++ ++|.+++.-.
T Consensus        29 ~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          29 YVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             EEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            78999999999999999987 9999998753

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=82.35  E-value=2.4  Score=30.22  Aligned_cols=67  Identities=9%  Similarity=0.055  Sum_probs=44.3

Q ss_pred             cEEEEECCC---hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGSG---QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||++||=+   ++..+++..+++-|.++.++-..+.....  +                 .........++.++++++ 
T Consensus         4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~--~-----------------~~~~~~~~~~~~~~d~~ea   64 (153)
T d1pg5a2           4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRAR--K-----------------EILDELNYPVKEVENPFEV   64 (153)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCC--H-----------------HHHTTCCSCEEEESCGGGT
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccc--h-----------------hhcccCCCeEEEEeCHHHH
Confidence            589999985   47999999999999998766554321100  0                 000111234677788876 


Q ss_pred             ccCCcEEEEe
Q 022407           82 LHSADIIVEA   91 (297)
Q Consensus        82 ~~~aD~Vi~~   91 (297)
                      ++++|+|...
T Consensus        65 i~~aDvvy~~   74 (153)
T d1pg5a2          65 INEVDVLYVT   74 (153)
T ss_dssp             GGGCSEEEEE
T ss_pred             hhcCCeEEEe
Confidence            9999998754

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.34  E-value=1.1  Score=35.84  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=24.9

Q ss_pred             cEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEe
Q 022407            6 KVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVD   35 (297)
Q Consensus         6 ~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d   35 (297)
                      +||++| |+ +-+|.++|..|++.|.+|..++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~   33 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVY   33 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEE
Confidence            688887 65 8899999999999998866554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.95  E-value=0.93  Score=37.04  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=57.9

Q ss_pred             cEEEEECCChhHHHHHHHHHHC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMD---GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~   81 (297)
                      ++|.=+|+|.=+  ++..|+++   .=.|+.+|++++.++.+++.+++.........      ......++.+. .|...
T Consensus       100 ~rVLE~GtGsG~--lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~------~~~~~~nv~~~~~di~~  171 (324)
T d2b25a1         100 DTVLEAGSGSGG--MSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH------VEEWPDNVDFIHKDISG  171 (324)
T ss_dssp             CEEEEECCTTSH--HHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC------SSCCCCCEEEEESCTTC
T ss_pred             CEEEEecccccH--HHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhh------hhccccceeEEecchhh
Confidence            578888887632  33333332   23799999999999988877765533221110      11122333332 23221


Q ss_pred             ----c--cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407           82 ----L--HSADIIVEAIVESEDVKKKLFSELDKITKASAILAS  118 (297)
Q Consensus        82 ----~--~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s  118 (297)
                          +  ...|.||.-+|+...    ++.++.+.++++..++.
T Consensus       172 ~~~~~~~~~fD~V~LD~p~P~~----~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         172 ATEDIKSLTFDAVALDMLNPHV----TLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             CC-------EEEEEECSSSTTT----THHHHGGGEEEEEEEEE
T ss_pred             cccccCCCCcceEeecCcCHHH----HHHHHHHhccCCCEEEE
Confidence                1  346888887777543    56677788888776664

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.76  E-value=0.75  Score=35.37  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=30.7

Q ss_pred             cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHH
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKS   47 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~   47 (297)
                      ++|.=||||.=  ..+..+++++ .+|+++|.+++.++.+++.
T Consensus        55 ~~VLdIGcG~G--~~a~~~a~~~~~~v~~id~s~~~~~~a~~~   95 (229)
T d1zx0a1          55 GRVLEVGFGMA--IAASKVQEAPIDEHWIIECNDGVFQRLRDW   95 (229)
T ss_dssp             EEEEEECCTTS--HHHHHHHTSCEEEEEEEECCHHHHHHHHHH
T ss_pred             CeEEEeeccch--HHHHHHHHcCCCeEEEeCCCHHHHHHHHHH
Confidence            58999999973  3455677654 6899999999988877543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.66  E-value=0.25  Score=35.81  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=24.4

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCcEE
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLDVW   32 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~   32 (297)
                      +||.|||+|..|.-+|..+++.|.+++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCccc
Confidence            689999999999999999999997643

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.35  E-value=0.37  Score=32.62  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             CcEEEEECCC----------hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407            5 MKVMGVVGSG----------QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR   74 (297)
Q Consensus         5 ~~~V~iiG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~   74 (297)
                      .++|||+|+=          .....+...|.+.|.+|.+||+.-...                          .......
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~--------------------------~~~~~~~   68 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL--------------------------ESEDQSV   68 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC--------------------------CTTCCSE
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChh--------------------------HhccCCE
Confidence            4689999973          355678888999999999999864310                          0112235


Q ss_pred             EecCccc-ccCCcEEEEec
Q 022407           75 CTSNLKD-LHSADIIVEAI   92 (297)
Q Consensus        75 ~~~~~~~-~~~aD~Vi~~v   92 (297)
                      ...++++ +..+|+||...
T Consensus        69 ~~~~l~~~~~~sDiII~~~   87 (108)
T d1dlja3          69 LVNDLENFKKQANIIVTNR   87 (108)
T ss_dssp             ECCCHHHHHHHCSEEECSS
T ss_pred             EEeCHHHHHhhCCEEEEcC
Confidence            6677776 67899777544

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=80.75  E-value=3.6  Score=32.23  Aligned_cols=93  Identities=11%  Similarity=0.109  Sum_probs=58.0

Q ss_pred             CcEEEEECCChhHHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcc
Q 022407            5 MKVMGVVGSGQMGSGIAQLGVM---DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLK   80 (297)
Q Consensus         5 ~~~V~iiG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~   80 (297)
                      -++|.=+|+|.=+  ++..|++   .+-+|+.+|.+++.++.+++.+++       .|..         .++.+ ..|..
T Consensus       104 G~~VLDiG~GsG~--lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~-------~g~~---------~~v~~~~~d~~  165 (266)
T d1o54a_         104 GDRIIDTGVGSGA--MCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-------WGLI---------ERVTIKVRDIS  165 (266)
T ss_dssp             TCEEEEECCTTSH--HHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-------TTCG---------GGEEEECCCGG
T ss_pred             CCEEEECCCCCCH--HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hccc---------cCcEEEecccc
Confidence            3689999998743  3333443   234899999999999888665442       1211         11222 12222


Q ss_pred             ---cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407           81 ---DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASN  119 (297)
Q Consensus        81 ---~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~  119 (297)
                         +...+|.|+.-+|+...    ++.++.+.++++..++..
T Consensus       166 ~~~~~~~~D~V~~d~p~p~~----~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         166 EGFDEKDVDALFLDVPDPWN----YIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             GCCSCCSEEEEEECCSCGGG----THHHHHHHEEEEEEEEEE
T ss_pred             ccccccceeeeEecCCCHHH----HHHHHHhhcCCCCEEEEE
Confidence               24568999999987664    466677777777766543

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=80.75  E-value=2.6  Score=30.01  Aligned_cols=71  Identities=18%  Similarity=0.381  Sum_probs=47.7

Q ss_pred             cEEEEECC---ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407            6 KVMGVVGS---GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-   81 (297)
Q Consensus         6 ~~V~iiG~---G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-   81 (297)
                      .||++||=   +++..+++..+.+-|.+++++.+..-.....   +   .....+.+           ..+..++|+++ 
T Consensus         5 l~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~---~---~~~~~~~~-----------~~~~~~~d~~~a   67 (157)
T d1ml4a2           5 LKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRH---I---VEELREKG-----------MKVVETTTLEDV   67 (157)
T ss_dssp             EEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHH---H---HHHHHHTT-----------CCEEEESCTHHH
T ss_pred             CEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchH---H---HHHHHhhc-----------ccceeecCHHHh
Confidence            58999999   5678999999999999999987643221110   0   01112222           23466778776 


Q ss_pred             ccCCcEEEEecc
Q 022407           82 LHSADIIVEAIV   93 (297)
Q Consensus        82 ~~~aD~Vi~~v~   93 (297)
                      ++++|+|.....
T Consensus        68 v~~aDvvy~~~~   79 (157)
T d1ml4a2          68 IGKLDVLYVTRI   79 (157)
T ss_dssp             HTTCSEEEECCC
T ss_pred             hccCcEEEeecc
Confidence            999999887654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.61  E-value=0.7  Score=35.12  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=27.3

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCCc--EEEEeCC
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGLD--VWLVDTD   37 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~~--V~~~d~~   37 (297)
                      .++.|||+|..|..+|..|.+.|++  |++++..
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            4688999999999999999988874  8888753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.33  E-value=2.3  Score=34.46  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCccc--
Q 022407            6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKD--   81 (297)
Q Consensus         6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--   81 (297)
                      ++|.-||||. | .++..++++|. .|+.+|.++ .++.+++.+       .+.+.         ..++++ ..+..+  
T Consensus        40 ~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~-------~~~~~---------~~~i~~i~~~~~~l~  100 (328)
T d1g6q1_          40 KIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMSS-IIEMAKELV-------ELNGF---------SDKITLLRGKLEDVH  100 (328)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTCCSEEEEEESST-HHHHHHHHH-------HHTTC---------TTTEEEEESCTTTSC
T ss_pred             CEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCCH-HHHHHHHHH-------HHhCc---------cccceEEEeehhhcc
Confidence            6799999996 4 46667888885 799999885 333332222       22222         122322 223332  


Q ss_pred             c--cCCcEEEEecc----cCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407           82 L--HSADIIVEAIV----ESEDVKKKLFSELDKITKASAILASNT  120 (297)
Q Consensus        82 ~--~~aD~Vi~~v~----e~~~~k~~~~~~l~~~~~~~~ii~s~t  120 (297)
                      +  ...|+|+....    ........++....++++++.+++.+.
T Consensus       101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~  145 (328)
T d1g6q1_         101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK  145 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence            1  35788875332    122335567777888888888776443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.06  E-value=0.91  Score=34.48  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=25.8

Q ss_pred             EEEECCChhHHHHHHHHHHCCC-cEEEEeC
Q 022407            8 MGVVGSGQMGSGIAQLGVMDGL-DVWLVDT   36 (297)
Q Consensus         8 V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~   36 (297)
                      |.|||+|.-|..-|..+++.|. .|.+.+.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            7899999999999999999886 6888875