Citrus Sinensis ID: 022411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKFRADASEKRIRRIVSGVA
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHcccEEcccccccccccccccEEEEEEEccccccccccccccccccHHHHccccccccccHHHHccHHHcccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHccccccccccEEEcccccccccccccccccccEEEEEccccccccccHHccccccHHEHHHHccccc
Coil and Loop (DISEMBL)
MDTGKMQSAVLAlsedkilpVSAVLNAIRDLGdeaveqcdpQIITQasslsqlpvesfsIDTVLsissshelpgdqLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIqlksvvpaevvsfgvkgkkptwkigssfaikKAPKSLAklqvdddsdlidedtllteedlkkpqlpsvgdcevgstrkackNCICGRAEAEEKVEKLGLTMDqlknpqsacgmwtwrcfplrymplqgsasiqtgregvtvkqlprsrhldmKFRADASEKRIRRIVSGVA
Flexible Loop (DISEMBL)
MDTGKMQSAVLalsedkilpVSAVLNAIRDLGDEAVEQCDPQIITQasslsqlpVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYkkltsdkgdVDKAISALEGKLLLAGFLDAQRIQLKSVVPaevvsfgvkgkkptwkigssfaikkapkslaklqvdddsDLIDEDTLlteedlkkpqlpsvgdcevgstrKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGsasiqtgregvtvkqlprsrhldmkfradasekrirRIVSGVA
Low Complexity Region (SEG)
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVdddsdlidedtllteedlKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKFRADASEKRIRRIVSGVA
Disordered region (IsUnstruct)
**********LALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI********DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIK**************************************DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGS******************************************
Disordered Region (DISOPRED)
*******SAVLALSEDKILPVSAVLNA***********CD****************SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS***D**KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGK*********************LQVDDDSDLIDEDTLLTEEDLK************************************************ACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKF***********IVSG**
Disordered Region (DISEMBL)
*********VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKFRADASEKRIRRIVSGVA
Disordered Region (DISPRO)
*DT*KMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIK****S**KLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLT*D**KNPQSACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKFRADASEKR***IVS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMWTWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRHLDMKFRADASEKRIRRIVSGVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
D1I234	272	Anamorsin homolog OS=Viti	yes	no	0.824	0.900	0.664	1e-84
A9PBH9	277	Anamorsin homolog OS=Popu	yes	no	0.841	0.902	0.629	3e-81
B9RBT0	274	Anamorsin homolog OS=Rici	N/A	no	0.835	0.905	0.608	1e-79
B7FNA9	265	Anamorsin homolog OS=Medi	N/A	no	0.838	0.939	0.558	1e-70
C6TKZ5	260	Anamorsin homolog OS=Glyc	no	no	0.791	0.903	0.579	7e-69
Q8L7Z3	272	Anamorsin homolog OS=Arab	yes	no	0.875	0.955	0.492	4e-59
Q7XQ97	265	Anamorsin homolog 1 OS=Or	yes	no	0.774	0.867	0.502	2e-52
A2XYW4	265	Anamorsin homolog 1 OS=Or	N/A	no	0.740	0.830	0.514	3e-52
B8ARI7	264	Anamorsin homolog 2 OS=Or	N/A	no	0.740	0.833	0.514	2e-51
Q7XPW7	264	Anamorsin homolog 2 OS=Or	yes	no	0.680	0.765	0.532	4e-51

>sp|D1I234|DRE2_VITVI Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 196/253 (77%), Gaps = 8/253 (3%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 126 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW---- 240
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACG      
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 241 TWRC--FPLRYMP 251
            +RC   P + +P
Sbjct: 241 AFRCGTCPYKGLP 253

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.
Vitis vinifera (taxid: 29760)

>sp|A9PBH9|DRE2_POPTR Anamorsin homolog OS=Populus trichocarpa GN=POPTRDRAFT_761104 PE=2 SV=1

 Score =  301 bits (772), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 197/259 (76%), Gaps = 9/259 (3%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 MW----TWRC--FPLRYMP 251
                  +RC   P + +P
Sbjct: 240 SCGLGDAFRCGTCPYKGLP 258

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Populus trichocarpa (taxid: 3694)

>sp|B9RBT0|DRE2_RICCO Anamorsin homolog OS=Ricinus communis GN=RCOM_1680640 PE=3 SV=1

 Score =  296 bits (758), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/258 (60%), Positives = 195/258 (75%), Gaps = 10/258 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  + Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+
Sbjct: 1   MDRTRKQCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSM 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGF
Sbjct: 61  DIVISICRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ +QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+
Sbjct: 121 LEAQGLQLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LLTEED+KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACG 
Sbjct: 179 LLTEEDMKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGS 237

Query: 240 W----TWRC--FPLRYMP 251
                 +RC   P + +P
Sbjct: 238 CGLGDAFRCSTCPYKGLP 255

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Ricinus communis (taxid: 3988)

>sp|B7FNA9|DRE2_MEDTR Anamorsin homolog OS=Medicago truncatula PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 183/267 (68%), Gaps = 18/267 (6%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  KM  AVLA +++ +LPVS V +AIR+LG+E VE+ DP +IT ASSLS+ PVES S+
Sbjct: 1   MDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+ I  S + P DQL +E+ RVLK GGT LI K   S  G  DK I  LE KLLLAGF
Sbjct: 61  DLVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIRKSSQSAVGSGDKMIPDLENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +Q          S  +K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDE++L
Sbjct: 121 SEIQALQ----------SSVIKAKKPSWKIGSSFALKKVVKSSPKVQIDFDSDLIDENSL 170

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW 240
           L+EEDLKKP+LPS GDCE+G TRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG  
Sbjct: 171 LSEEDLKKPELPS-GDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSC 229

Query: 241 ----TWRCFPLRYMPLQGSASIQTGRE 263
                +RC      P +G  + + G +
Sbjct: 230 GLGDAFRC---STCPYKGLPAFKMGEK 253

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Medicago truncatula (taxid: 3880)

>sp|C6TKZ5|DRE2_SOYBN Anamorsin homolog OS=Glycine max PE=2 SV=1

 Score =  260 bits (665), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 146/252 (57%), Positives = 178/252 (70%), Gaps = 17/252 (6%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           M  AVLA ++  +LPVS V +AIR+LG+  +EQ DP ++T AS LS+LPV+S S+D V+ 
Sbjct: 1   MDGAVLACTDGAVLPVSQVFDAIRELGNGGLEQWDPLVLTSASLLSKLPVDSSSVDFVIL 60

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S + P DQL++EI RVLK  GTILI K   S  G  DK IS+LE KLLLAGF + Q 
Sbjct: 61  IWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISSLENKLLLAGFTEPQV 120

Query: 126 IQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEED 185
           +Q          S G+K KKP+WKIGSSFA+KK  +S  K+Q+D DSDLIDED+ LTEED
Sbjct: 121 LQ----------SAGIKAKKPSWKIGSSFALKKVIRSSPKMQIDFDSDLIDEDSFLTEED 170

Query: 186 LKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW----T 241
           LKKPQLP  GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG       
Sbjct: 171 LKKPQLPP-GDCEIGSTRKACKNCTCGRAEEEEKVLKLGLTTEQIDNPQSACGNCGLGDA 229

Query: 242 WRC--FPLRYMP 251
           +RC   P + +P
Sbjct: 230 FRCSTCPYKGLP 241

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Glycine max (taxid: 3847)

>sp|Q8L7Z3|DRE2_ARATH Anamorsin homolog OS=Arabidopsis thaliana GN=At5g18400 PE=1 SV=1

 Score =  228 bits (581), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/274 (49%), Positives = 190/274 (69%), Gaps = 14/274 (5%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD+   Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S+
Sbjct: 1   MDSMMNQKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           + VL+IS + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGF
Sbjct: 61  EAVLAISKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGF 117

Query: 121 LDAQRIQLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+ Q + LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +DDD DLIDED+
Sbjct: 118 LEPQCLDLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDS 177

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LLTEEDL KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CG 
Sbjct: 178 LLTEEDLMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGS 235

Query: 240 W----TWRCFPLRYMPLQGSASIQTGREGVTVKQ 269
                 +RC      P +G    + G E VT+ Q
Sbjct: 236 CGLGDAFRC---GTCPYKGLPPFKLG-EKVTLSQ 265

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XQ97|DRE21_ORYSJ Anamorsin homolog 1 OS=Oryza sativa subsp. japonica GN=Os04g0674400 PE=2 SV=2

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/249 (50%), Positives = 163/249 (65%), Gaps = 19/249 (7%)

Query: 11  LALSEDKILPVSAVLNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISS 68
           LA++++  LP    L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++  
Sbjct: 9   LAVTDELALP----LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIK 64

Query: 69  SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL 128
             E  GD  + EISRVLK GG +LI     S   D D   ++++ KLLL GF+D Q    
Sbjct: 65  KVENLGDLFITEISRVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAA 119

Query: 129 KSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKK 188
            S      V+  +K KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKK
Sbjct: 120 SSQDSEHSVT--IKAKKVSWSLGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKK 177

Query: 189 PQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW----TWRC 244
           P+LP VGDCEVG+TRKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG       +RC
Sbjct: 178 PELPVVGDCEVGATRKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRC 237

Query: 245 --FPLRYMP 251
              P R +P
Sbjct: 238 GTCPYRGLP 246

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XYW4|DRE21_ORYSI Anamorsin homolog 1 OS=Oryza sativa subsp. indica GN=H0403D02.15 PE=2 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 155/235 (65%), Gaps = 15/235 (6%)

Query: 25  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 82
           L A+ DL   A V + +  +ITQ +SL  +LP    S+ +VL++    E  G+Q + EIS
Sbjct: 19  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFADASVGSVLAVIKKVENLGNQFITEIS 78

Query: 83  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 142
           RVLK GG +L+     S   D D   +++E KLLL GF+D Q     S      V+  +K
Sbjct: 79  RVLKAGGMVLVQ----SSPSDQDPN-NSIERKLLLGGFVDVQASAASSQDNEHSVN--IK 131

Query: 143 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 132 AKKASWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 191

Query: 203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW----TWRC--FPLRYMP 251
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG       +RC   P R +P
Sbjct: 192 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLP 246

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|B8ARI7|DRE22_ORYSI Anamorsin homolog 2 OS=Oryza sativa subsp. indica GN=OsI_17963 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 155/235 (65%), Gaps = 15/235 (6%)

Query: 25  LNAIRDLGDEA-VEQCDPQIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEIS 82
           L A+ DL   A V + +  +ITQ +SL  +LP +  S+ +VL++    E  GD  + EIS
Sbjct: 18  LRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEIS 77

Query: 83  RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK 142
           RVLK GG +LI     S   D D   ++++ KLLL GF+D Q     S      V+  +K
Sbjct: 78  RVLKAGGMVLIQ----SSPSDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IK 130

Query: 143 GKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
            KK +W +GSSF +KKA K L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+T
Sbjct: 131 AKKVSWSMGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGAT 190

Query: 203 RKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW----TWRC--FPLRYMP 251
           RKACKNC CGRAEAEEKVEKL LT +Q+ NPQSACG       +RC   P R +P
Sbjct: 191 RKACKNCTCGRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLP 245

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XPW7|DRE22_ORYSJ Anamorsin homolog 2 OS=Oryza sativa subsp. japonica GN=Os04g0682050 PE=2 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 146/216 (67%), Gaps = 14/216 (6%)

Query: 43  IITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDK 101
           +ITQ +SL  +LP +  S+ +VL++    E  GD  + EISRVLK GG +LI     S  
Sbjct: 37  VITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEISRVLKAGGMVLIQ----SSP 92

Query: 102 GDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPK 161
            D D   ++++ KLLL GF+D Q     S      V+  +K KK +W +GSSF +KKA K
Sbjct: 93  SDQDPN-NSIQRKLLLGGFVDVQASAASSQDSEHSVT--IKAKKVSWSMGSSFPLKKATK 149

Query: 162 SLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVE 221
            L K+Q+DDDS+LIDED+LLTE+DLKKP+LP VGDCEVG+TRKACKNC CGRAEAEEKVE
Sbjct: 150 GLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGATRKACKNCTCGRAEAEEKVE 209

Query: 222 KLGLTMDQLKNPQSACGMW----TWRC--FPLRYMP 251
           KL LT +Q+ NPQSACG       +RC   P R +P
Sbjct: 210 KLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLP 245

May be required for the maturation of extramitochondrial Fe/S proteins (By similarity). Has anti-apoptotic effects in the cell.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
225425061	276	PREDICTED: anamorsin homolog [Vitis vini	0.841	0.905	0.662	2e-84
292630750	272	RecName: Full=Anamorsin homolog; AltName	0.824	0.900	0.664	7e-83
292630769	277	RecName: Full=Anamorsin homolog; AltName	0.841	0.902	0.629	2e-79
118483629	277	unknown [Populus trichocarpa]	0.841	0.902	0.629	2e-79
255537095	274	Anamorsin, putative [Ricinus communis] g	0.835	0.905	0.608	7e-78
224082520	266	predicted protein [Populus trichocarpa]	0.804	0.898	0.612	2e-74
356543201	267	PREDICTED: anamorsin homolog [Glycine ma	0.811	0.902	0.581	7e-71
388497454	274	unknown [Lotus japonicus]	0.835	0.905	0.589	1e-70
147771846	279	hypothetical protein VITISV_035762 [Viti	0.781	0.831	0.595	3e-70
357477471	441	U11/U12 small nuclear ribonucleoprotein	0.764	0.514	0.600	5e-69

>gi|225425061|ref|XP_002271546.1| PREDICTED: anamorsin homolog [Vitis vinifera]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/258 (66%), Positives = 199/258 (77%), Gaps = 8/258 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MDT  +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+
Sbjct: 1   MDTKMLQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSL 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGF
Sbjct: 61  DIVISICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGF 119

Query: 121 LDAQRIQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+
Sbjct: 120 LEAQAIQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDS 179

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LLTEEDLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACG 
Sbjct: 180 LLTEEDLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGS 239

Query: 240 W----TWRC--FPLRYMP 251
                 +RC   P + +P
Sbjct: 240 CGLGDAFRCGTCPYKGLP 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630750|sp|D1I234.1|DRE2_VITVI RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|297738244|emb|CBI27445.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 196/253 (77%), Gaps = 8/253 (3%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSLSQLPVES S+D V+S
Sbjct: 2   LQNSTLALTDHEVLSISTVLDAVRKLDNAGVDQCDPLIITQASSLSQLPVESSSLDIVIS 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E P D+LL EISRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL+AQ 
Sbjct: 62  ICRSLEFPCDKLLAEISRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFLEAQA 120

Query: 126 IQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           IQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+LLTEE
Sbjct: 121 IQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSLLTEE 180

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW---- 240
           DLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACG      
Sbjct: 181 DLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSCGLGD 240

Query: 241 TWRC--FPLRYMP 251
            +RC   P + +P
Sbjct: 241 AFRCGTCPYKGLP 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292630769|sp|A9PBH9.1|DRE2_POPTR RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|118483677|gb|ABK93732.1| unknown [Populus trichocarpa]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 197/259 (76%), Gaps = 9/259 (3%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 MW----TWRC--FPLRYMP 251
                  +RC   P + +P
Sbjct: 240 SCGLGDAFRCGTCPYKGLP 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483629|gb|ABK93709.1| unknown [Populus trichocarpa]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 197/259 (76%), Gaps = 9/259 (3%)

Query: 1   MDTGKM-QSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFS 59
           MDT +M Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S
Sbjct: 1   MDTKRMLQNSVLALADDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D V+ I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DKAIS L+ KLLL G
Sbjct: 61  VDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKAISGLQRKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDED 178
           FL+A+ +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED
Sbjct: 121 FLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDED 180

Query: 179 TLLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           +LLTEEDLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG
Sbjct: 181 SLLTEEDLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACG 239

Query: 239 MW----TWRC--FPLRYMP 251
                  +RC   P + +P
Sbjct: 240 SCGLGDAFRCGTCPYKGLP 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537095|ref|XP_002509614.1| Anamorsin, putative [Ricinus communis] gi|292630771|sp|B9RBT0.1|DRE2_RICCO RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog gi|223549513|gb|EEF51001.1| Anamorsin, putative [Ricinus communis]

 Score =  296 bits (758), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/258 (60%), Positives = 195/258 (75%), Gaps = 10/258 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  + Q +VLA ++D +LPVS ++NA+R+LG+E  EQCDPQ++TQASSLS+LPV+S S+
Sbjct: 1   MDRTRKQCSVLAFTDDAVLPVSTIVNAVRELGNEGAEQCDPQVVTQASSLSKLPVDSSSM 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+SI  S +  GD L EEISRVLKPGGT+LIYK L S      +A+ ALE KLLLAGF
Sbjct: 61  DIVISICRSLQFQGDFLFEEISRVLKPGGTVLIYKTLQSVAEGTSEAVLALERKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEV-VSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           L+AQ +QL S+  + +  SFG+K KKP+WKIGSSFA+KK+ K   K+ +DD  DLIDED+
Sbjct: 121 LEAQGLQLNSLELSGLDHSFGMKAKKPSWKIGSSFALKKSTKGSVKVNLDD--DLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LLTEED+KKP +   GDCEVGSTRKACKNC CGRAEAEEKV KLG TM+QL NPQSACG 
Sbjct: 179 LLTEEDMKKPPIAPGGDCEVGSTRKACKNCTCGRAEAEEKV-KLGPTMEQLNNPQSACGS 237

Query: 240 W----TWRC--FPLRYMP 251
                 +RC   P + +P
Sbjct: 238 CGLGDAFRCSTCPYKGLP 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082520|ref|XP_002306726.1| predicted protein [Populus trichocarpa] gi|222856175|gb|EEE93722.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/253 (61%), Positives = 188/253 (74%), Gaps = 14/253 (5%)

Query: 6   MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLS 65
           +Q++VLAL++D ++ +  V NA R++ ++ V+QCDPQIITQASSLS+LP+E  S+D V+ 
Sbjct: 2   LQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIP 61

Query: 66  ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125
           I  S E PGD L++E+ RVLKPGGTILIY    S  G+ DK       KLLL GFL+A+ 
Sbjct: 62  IFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQSVIGETDKR------KLLLGGFLEAEA 115

Query: 126 IQLKSVVPAEVV-SFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTLLTEE 184
           +Q K V  + VV SFGVK KKP+W IGSSFA+KK+ KS  K+Q DD SDLIDED+LLTEE
Sbjct: 116 LQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEE 175

Query: 185 DLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW---- 240
           DLKKPQLP VGDCEVGSTRKACKNC CGRAE EEKV KLG TMDQL NPQSACG      
Sbjct: 176 DLKKPQLPPVGDCEVGSTRKACKNCTCGRAEEEEKV-KLGPTMDQLSNPQSACGSCGLGD 234

Query: 241 TWRC--FPLRYMP 251
            +RC   P + +P
Sbjct: 235 AFRCGTCPYKGLP 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543201|ref|XP_003540051.1| PREDICTED: anamorsin homolog [Glycine max]

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 184/258 (71%), Gaps = 17/258 (6%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  K   AVLA ++  +LPVS V +AIR+LG+E VEQ DP ++T AS LS+LPV+S S+
Sbjct: 1   MDGAKTHGAVLACTDGAVLPVSQVFDAIRELGNEGVEQWDPLVLTSASLLSKLPVDSSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D ++ I  S + P DQL++EI RVLK  GTILI K   S  G  DK ISALE KLLLAGF
Sbjct: 61  DFLILIWLSIDCPVDQLIQEILRVLKVDGTILIRKSSQSAVGSFDKIISALENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +QL           G+K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLIDED+L
Sbjct: 121 TETQVLQLT----------GIKAKKPSWKIGSSFALKKVIKSSPKMQIDFDSDLIDEDSL 170

Query: 181 LTEEDLKKPQL-PSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LTEEDLKKPQL P++GDCE+GSTRKACKNC CGRAE +EK+ KLGLT +Q+ NPQSACG 
Sbjct: 171 LTEEDLKKPQLPPAIGDCEIGSTRKACKNCTCGRAEEDEKILKLGLTTEQINNPQSACGN 230

Query: 240 W----TWRC--FPLRYMP 251
                 +RC   P + +P
Sbjct: 231 CGLGDAFRCSTCPYKGLP 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497454|gb|AFK36793.1| unknown [Lotus japonicus]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/258 (58%), Positives = 189/258 (73%), Gaps = 10/258 (3%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPVESFS 59
           MD  K+  ++LA +++ +LPVS V +AI++LG++ V EQ +P +IT ASSLS+LPVES S
Sbjct: 1   MDAAKIGGSLLACTDEAVLPVSQVFDAIKELGNQGVDEQWNPLVITSASSLSKLPVESSS 60

Query: 60  IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119
           +D  + I  S + P DQL++EI RVLK GGT LI K   S  G VDKAIS LE KLLL G
Sbjct: 61  VDVAILIWQSLDSPVDQLVQEILRVLKAGGTTLIRKSSQSGVGSVDKAISDLESKLLLGG 120

Query: 120 FLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDT 179
           F + Q +Q  S VP+   S  VK KKP+WKIGSSFA+KKA KS  K+Q+D DSDLIDED+
Sbjct: 121 FTETQVLQ--STVPSGSKSSWVKAKKPSWKIGSSFALKKAVKSSPKVQIDFDSDLIDEDS 178

Query: 180 LLTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
           LLTE+DLKKPQLP +GDCE+GSTRKACKNC CGRAE EEKV KLGLT +Q+ NPQS+CG 
Sbjct: 179 LLTEDDLKKPQLP-LGDCEIGSTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSSCGS 237

Query: 240 W----TWRC--FPLRYMP 251
                 +RC   P + +P
Sbjct: 238 CGLGDAFRCSTCPYKGLP 255

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771846|emb|CAN71337.1| hypothetical protein VITISV_035762 [Vitis vinifera]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/257 (59%), Positives = 182/257 (70%), Gaps = 25/257 (9%)

Query: 2   DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID 61
           DT  +Q++ LAL++ ++L +S VL+A+R L +  V+QCDP IITQASSL+ L        
Sbjct: 22  DTKMLQNSTLALTDHEVLXISTVLDAVRKLDNAGVDQCDPLIITQASSLNHL-------- 73

Query: 62  TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121
             L IS           ++ SRVLKPGGT+LI K   S  G  D   S LE KLL+AGFL
Sbjct: 74  NFLVISC---------WQKSSRVLKPGGTVLIQKTSQSVAGIKDGETS-LERKLLMAGFL 123

Query: 122 DAQRIQLKSVVPAE-VVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
           +AQ JQLK VVP+E   SFG+K KKP+WKIGSSF+IKKA KSL K Q++DD DLIDED+L
Sbjct: 124 EAQAJQLKPVVPSEGAQSFGIKAKKPSWKIGSSFSIKKAEKSLPKFQIEDDMDLIDEDSL 183

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGMW 240
           LTEEDLKKPQLP  GDCEVGSTRKACKNC CGRAE EEKVEKLGLTMDQL NPQSACG  
Sbjct: 184 LTEEDLKKPQLPVDGDCEVGSTRKACKNCTCGRAEEEEKVEKLGLTMDQLNNPQSACGSC 243

Query: 241 ----TWRC--FPLRYMP 251
                +RC   P + +P
Sbjct: 244 GLGDAFRCGTCPYKGLP 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477471|ref|XP_003609021.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago truncatula] gi|355510076|gb|AES91218.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago truncatula]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 174/238 (73%), Gaps = 11/238 (4%)

Query: 1   MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
           MD  KM  AVLA +++ +LPVS V +AIR+LG+E VE+ DP +IT ASSLS+ PVES S+
Sbjct: 1   MDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSV 60

Query: 61  DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
           D V+ I  S + P DQL +E+ RVLK GGT LI+K   S  G  DK I  LE KLLLAGF
Sbjct: 61  DLVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIHKSSQSAVGSGDKMIPDLENKLLLAGF 120

Query: 121 LDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVDDDSDLIDEDTL 180
            + Q +Q          S  +K KKP+WKIGSSFA+KK  KS  K+Q+D DSDLID+++L
Sbjct: 121 SEIQALQ----------SSVIKAKKPSWKIGSSFALKKFVKSSPKVQIDFDSDLIDKNSL 170

Query: 181 LTEEDLKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACG 238
           L+EEDLKKP+LPS GDCE+G TRKACKNC CGRAE EEKV KLGLT +Q+ NPQSACG
Sbjct: 171 LSEEDLKKPELPS-GDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACG 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2146178	272	AT5G18400 [Arabidopsis thalian	0.885	0.966	0.435	2.6e-54
TAIR|locus:4515103586	182	AT5G18362 "AT5G18362" [Arabido	0.370	0.604	0.441	3.9e-21
UNIPROTKB|Q6FI81	312	CIAPIN1 "Anamorsin" [Homo sapi	0.518	0.493	0.268	4.4e-13
UNIPROTKB|Q5EAC7	310	CIAPIN1 "Anamorsin" [Bos tauru	0.518	0.496	0.262	8.1e-13
UNIPROTKB|E2RTJ0	315	CIAPIN1 "Uncharacterized prote	0.474	0.447	0.272	8.3e-12
MGI|MGI:1922083	309	Ciapin1 "cytokine induced apop	0.525	0.504	0.259	1.8e-11
UNIPROTKB|I3L704	313	CIAPIN1 "Uncharacterized prote	0.245	0.233	0.395	3.6e-11
DICTYBASE|DDB_G0285251	256	rsc43 "Protein DRE2" [Dictyost	0.639	0.742	0.296	9e-11
UNIPROTKB|Q5ZJA2	306	CIAPIN1 "Anamorsin" [Gallus ga	0.457	0.444	0.254	5e-10
UNIPROTKB|F1P0W1	305	CIAPIN1 "Anamorsin" [Gallus ga	0.457	0.445	0.254	1.5e-09

TAIR|locus:2146178 AT5G18400 [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 118/271 (43%), Positives = 171/271 (63%)

Query:     1 MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSI 60
             MD+   Q  VLA+++D +LPVS+VL  +++LG E +E  DP IITQAS+++Q P+++ S+
Sbjct:     1 MDSMMNQKTVLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSV 60

Query:    61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120
             + VL+IS + + P D++  E SR+LKPGGT+ + K L  + G++ + I   + ++ LAGF
Sbjct:    61 EAVLAISKTSDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGF 117

Query:   121 LDAQRIQLKSV-VPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXX 179
             L+ Q + LKS+ +    +SFG+K KKP+WKIGSSFA+KK   +L K+ +           
Sbjct:   118 LEPQCLDLKSIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDS 177

Query:   180 XXXXXXXKKPQLPSVGDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM 239
                     KPQLP    CE  +T+KACKNC+CGRAE EEK  KLGLT DQ++NPQS+CG 
Sbjct:   178 LLTEEDLMKPQLPVASGCE--TTKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGS 235

Query:   240 W-TWRCFPLRYMPLQGSASIQTGREGVTVKQ 269
                   F     P +G    + G E VT+ Q
Sbjct:   236 CGLGDAFRCGTCPYKGLPPFKLG-EKVTLSQ 265

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:4515103586 AT5G18362 "AT5G18362" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/120 (44%), Positives = 68/120 (56%)

Query:   142 KGKKPTWKIGSSFAIKKAPKSLAKLQVXXXXXXXXXXXXXXXXXXKKPQLPSVGDCEVGS 201
             +GKK +WKIGSSFA+KK  K L K  +                  KKPQ+P+   CE  +
Sbjct:    11 EGKKNSWKIGSSFALKKPAKFLLKDNLDDDLDLIDEDSLLTEDDLKKPQVPAASGCE--T 68

Query:   202 TRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQSACGM-------WTW-RCFPLRYMPLQ 253
              +KACKNC+CGR E E K  KLGLT DQ++NPQS+CG        W+W  C     +PL+
Sbjct:    69 PKKACKNCVCGRDEIERKAVKLGLTEDQIENPQSSCGSISFLRVCWSWCSCLLPEELPLK 128

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q6FI81 CIAPIN1 "Anamorsin" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
 Identities = 47/175 (26%), Positives = 82/175 (46%)

Query:     2 DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSI 60
             D G      +A+  DK  PV A+   +  L  +A+   + ++ +     L Q   +  S 
Sbjct:     3 DFGISAGQFVAVVWDKSSPVEALKGLVDKL--QALTGNEGRVSVENIKQLLQSAHKESSF 60

Query:    61 DTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLL 116
             D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   L 
Sbjct:    61 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT 120

Query:   117 LAGFLDAQRIQLKSVVPAEVVS----FG----------VKGKKPTWKIGSSFAIK 157
             L+G ++ + +Q + + P EV S     G          + GKKP +++GSS  +K
Sbjct:   121 LSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLK 175

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q5EAC7 CIAPIN1 "Anamorsin" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
 Identities = 46/175 (26%), Positives = 83/175 (47%)

Query:     2 DTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQI-ITQASSLSQLPVESFSI 60
             D G      +A+  DK  PV A+ + +  L  +A+   + ++ +   + L Q   +  S 
Sbjct:     3 DFGISAGQFVAVIWDKSSPVEALKDLVDKL--QALTGDEGRVSVENINQLLQSAHKESSF 60

Query:    61 DTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD--KGDVDKAISALEGKLL 116
             D VLS  I  S  L    +L E++R+L+PGG + + + + +        K  S L   L 
Sbjct:    61 DIVLSGIIPGSTTLHSADILAEMARILRPGGCLFLKEPVETAVVNNSKVKTASKLCSALT 120

Query:   117 LAGFLDAQRIQLKSVVPAEV--------------VSFGVKGKKPTWKIGSSFAIK 157
             L+G ++ + +Q +S+ P E+              +S  + GKKP +++GSS  +K
Sbjct:   121 LSGLVEVKELQRESLSPEEIQSVREHLGYHSDSLLSLQITGKKPNFEVGSSSQLK 175

GO:0005737 "cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|E2RTJ0 CIAPIN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
 Identities = 45/165 (27%), Positives = 82/165 (49%)

Query:    22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESF---SIDTVLS--ISSSHELPGDQ 76
             S+ L A++DL D+  +    +      +++QL   +    S D +LS  I  S  L   +
Sbjct:    22 SSPLEALKDLVDKLQKLTGDEGQVSVENINQLLKSAHKESSFDIILSGVIPGSTTLHSTE 81

Query:    77 LLEEISRVLKPGGTILIYKKLTSDKGDVDKA--ISALEGKLLLAGFLDAQRIQLKSVVPA 134
             +L E++R+L+PGG + + + + +   +  K    S L   L L+G ++ + +Q +S+ P 
Sbjct:    82 ILAEMARILRPGGCLFLREPVETAVVNNSKVRTTSKLCSALTLSGLVEVKELQQESLSPK 141

Query:   135 EV--------------VSFGVKGKKPTWKIGSSFAIKKAPKSLAK 165
             E+              +S  + GKKP +++GSS  +K    SLAK
Sbjct:   142 EIQSVQEHLGYQSDNLLSVHITGKKPNFEVGSSSQLKL---SLAK 183

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:1922083 Ciapin1 "cytokine induced apoptosis inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 46/177 (25%), Positives = 87/177 (49%)

Query:    10 VLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQ-ASSLSQLPVESFSIDTVLS--I 66
             ++A+  DK  P  A+   +  L  + +   + Q+  +  + L Q   +  S D +LS  +
Sbjct:    11 LVAVFWDKSSPEEALKKLVARL--QELTGSEGQVFMENVTQLLQSSHKESSFDVILSGVV 68

Query:    67 SSSHELPGDQLLEEISRVLKPGGTILIYKKL-TSD-KGDVDKAISALEGKLLLAGFLDAQ 124
               S  L   ++L E++R+L+PGG + + + + T++   D  K  S L   L L+G ++ +
Sbjct:    69 PGSTSLHSAEVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIK 128

Query:   125 RIQLKSVVPAEVVS----FG----------VKGKKPTWKIGSSFAIKKAPKSLAKLQ 167
              +Q +++ P EV S     G          V GKKP +++GSS  +K   K  + ++
Sbjct:   129 ELQREALSPEEVQSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLKLPNKKSSSVK 185

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

UNIPROTKB|I3L704 CIAPIN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 112 (44.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
 Identities = 32/81 (39%), Positives = 41/81 (50%)

Query:   187 KKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKN-PQSACG-MWTW 242
             KKP   S+    C  G  RKACKNC CG AE  EK EK   + DQ+ + P+SACG  +  
Sbjct:   226 KKPDPASLRAAPCGEGKKRKACKNCTCGLAEELEK-EK---SRDQMSSQPKSACGNCYLG 281

Query:   243 RCFPLRYMPLQGSASIQTGRE 263
               F     P  G  + + G +
Sbjct:   282 DAFRCASCPYLGMPAFKPGEK 302

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

DICTYBASE|DDB_G0285251 rsc43 "Protein DRE2" [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 9.0e-11, P = 9.0e-11
 Identities = 65/219 (29%), Positives = 97/219 (44%)

Query:    44 ITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKG 102
             +T + S  Q  +++ + D V+ ISS    P    L+   S +LK GG + IY+    ++ 
Sbjct:    37 VTTSLSKEQQQIQN-NFDHVIIISSK---PFNSALISMYSNLLKKGGKLSIYQT-NENET 91

Query:   103 DVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKS 162
              V+  +  L G L+   F        K++V A+         KP+W    S  I   P +
Sbjct:    92 LVNSGMDFLIGGLV--DFKATSNSTYKTIVHAD---------KPSWDTNESSTIN-IPST 139

Query:   163 LAKLQVXXXXXXXXXXXXXXXXXXKKPQLPS--VGDCEVGSTRKACKNCICGRAEAEEKV 220
              +                       K   P+  + DCEVG T+KACKNC CGRAE EE  
Sbjct:   140 SSNNPWASIEGGDRINENDLVSENDKTSKPATTLDDCEVGKTKKACKNCTCGRAE-EENQ 198

Query:   221 EKLGLTMDQLKNPQ--SACGMWT----WRC--FPLRYMP 251
              K  LT + ++NP   S+CG  +    +RC   P R +P
Sbjct:   199 SKPKLTKEMIENPGVGSSCGNCSLGDAFRCGGCPYRGLP 237

GO:0006915 "apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5ZJA2 CIAPIN1 "Anamorsin" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query:    22 SAVLNAIRDLGD--EAVEQCDPQI-ITQASSLSQLPVESFSIDTVLS--ISSSHELPGDQ 76
             S+ + A++ L D  +A    D ++ +   + L Q      S D +LS  +  S      +
Sbjct:    19 SSPVEALKGLVDAVQASVGADSRVSVENINQLCQSAHRESSFDVILSGVVPGSTAQHSAE 78

Query:    77 LLEEISRVLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPA 134
             +L EI+R+LKPGG +L+ + +   S+     K  + L   L L+G ++ + +Q + +   
Sbjct:    79 VLAEIARILKPGGRVLLKEPVVTESENNSQIKTAAKLPAALTLSGLVEVKGLQKEPLTAE 138

Query:   135 EVVS----FG----------VKGKKPTWKIGSSFAIK 157
             E  S     G          ++G+KP +++GSS  +K
Sbjct:   139 EAQSVREHLGYQGNDLLIVQIEGRKPNFEVGSSSQLK 175

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P0W1 CIAPIN1 "Anamorsin" [Gallus gallus (taxid:9031)]

 Score = 111 (44.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query:    22 SAVLNAIRDLGD--EAVEQCDPQI-ITQASSLSQLPVESFSIDTVLS--ISSSHELPGDQ 76
             S+ + A++ L D  +A    D ++ +   + L Q      S D +LS  +  S      +
Sbjct:    19 SSPVEALKGLVDAVQASVGADSRVSVENINQLCQSAHRESSFDVILSGVVPGSTAQHSAE 78

Query:    77 LLEEISRVLKPGGTILIYKKLT--SDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPA 134
             +L EI+R+LKPGG +L+ + +   S+     K  + L   L L+G ++ + +Q + +   
Sbjct:    79 VLAEIARILKPGGRVLLKEPVVTESENNSQIKTAAKLPAALTLSGLVEVKELQKEPLTAE 138

Query:   135 EVVS----FG----------VKGKKPTWKIGSSFAIK 157
             E  S     G          ++G+KP +++GSS  +K
Sbjct:   139 EAQSVREHLGYQGNDLLIVQIEGRKPNFEVGSSSQLK 175

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XPW7	DRE22_ORYSJ	No assigned EC number	0.5324	0.6801	0.7651	yes	no
A9PBH9	DRE2_POPTR	No assigned EC number	0.6293	0.8417	0.9025	yes	no
Q8L7Z3	DRE2_ARATH	No assigned EC number	0.4927	0.8754	0.9558	yes	no
B9RBT0	DRE2_RICCO	No assigned EC number	0.6085	0.8350	0.9051	N/A	no
D1I234	DRE2_VITVI	No assigned EC number	0.6640	0.8249	0.9007	yes	no
B7FNA9	DRE2_MEDTR	No assigned EC number	0.5580	0.8383	0.9396	N/A	no
Q7XQ97	DRE21_ORYSJ	No assigned EC number	0.5020	0.7744	0.8679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam05093	97	pfam05093, CIAPIN1, Cytokine-induced anti-apoptosi	1e-11
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-08
COG5636	284	COG5636, COG5636, Uncharacterized conserved protei	3e-07

>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 13/68 (19%)

Query: 184 EDLKKPQLPSV--GDCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQ-----------L 230
           EDLKKP   ++       G  RKACKNC CG AE EE+ +K      Q           +
Sbjct: 1   EDLKKPDPVTLRKCGPGPGKKRKACKNCTCGLAEEEEQEKKDKSAAQQQKVEDDLAEITV 60

Query: 231 KNPQSACG 238
           +   S+CG
Sbjct: 61  EGKTSSCG 68

Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS). CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis. Dre2 has been found to interact with the yeast reductase Tah18, forming a tight cytosolic complex implicated in the response to high levels of oxidative stress. Length = 97

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 30 DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 86
          DL  E +                  LP    S D V+S    H LP  ++ L EI+RVLK
Sbjct: 26 DLSPEMLALARKRAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLK 85

Query: 87 PGGTILI 93
          PGG ++I
Sbjct: 86 PGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|227923 COG5636, COG5636, Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 85  LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGK 144
           L+ G  +  +KK          + S L  K   +     +          ++ +     +
Sbjct: 79  LQSGSKLPTFKK-------ASSSTSNLPKKADHSRQPIVKETDSFKPPSFKMTTEPKVYR 131

Query: 145 KPTWKIGSSFAIKKAPKSLAK--LQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEVGST 202
                +     ++K  +S A+  ++ D D   I ED LL E+   K    S         
Sbjct: 132 VVDDLMEDKEELRKLLRSKAQYMMRKDTDPRTIMEDELLDEDSEDKAIQRSECPPSKTKK 191

Query: 203 RKACKNCICGRAEAEE 218
           ++ACK+C CG  E EE
Sbjct: 192 KRACKDCTCGLKEEEE 207

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG4020	257	consensus Protein DRE2, required for cell viabilit	100.0
PF05093	100	CIAPIN1: Cytokine-induced anti-apoptosis inhibitor	100.0
COG5636	284	Uncharacterized conserved protein, contains Zn-rib	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.41
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.25
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.17
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.16
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.13
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.1
PLN02244	340	tocopherol O-methyltransferase	98.98
PLN02490	340	MPBQ/MSBQ methyltransferase	98.89
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.89
KOG4300	252	consensus Predicted methyltransferase [General fun	98.85
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.83
PLN02336	475	phosphoethanolamine N-methyltransferase	98.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.69
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.66
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.53
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.5
PRK08317	241	hypothetical protein; Provisional	98.5
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.47
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.46
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.4
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.4
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.39
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.37
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.29
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.29
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.29
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.28
PRK11207	197	tellurite resistance protein TehB; Provisional	98.27
PRK05785	226	hypothetical protein; Provisional	98.26
COG2521	287	Predicted archaeal methyltransferase [General func	98.23
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.2
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.19
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.19
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.19
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.16
PRK04266	226	fibrillarin; Provisional	98.12
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.12
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.11
PRK06922	677	hypothetical protein; Provisional	98.11
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.11
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.09
PRK12335	287	tellurite resistance protein TehB; Provisional	98.06
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.01
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.01
PLN02336	475	phosphoethanolamine N-methyltransferase	98.0
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.99
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.97
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.97
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.87
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.84
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.83
PLN03075	296	nicotianamine synthase; Provisional	97.82
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.78
PTZ00146	293	fibrillarin; Provisional	97.77
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.68
KOG3010	261	consensus Methyltransferase [General function pred	97.65
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.65
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.63
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.61
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.54
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.51
PRK06202	232	hypothetical protein; Provisional	97.49
PRK14967	223	putative methyltransferase; Provisional	97.49
PRK14968	188	putative methyltransferase; Provisional	97.47
KOG2940	325	consensus Predicted methyltransferase [General fun	97.46
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.45
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.39
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.37
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.34
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.3
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.3
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.29
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.2
KOG2361	264	consensus Predicted methyltransferase [General fun	97.09
TIGR03438	301	probable methyltransferase. This model represents	97.07
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.05
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.04
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.04
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.03
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.99
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.95
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.9
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.89
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.88
PRK01581	374	speE spermidine synthase; Validated	96.87
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.83
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.78
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.77
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.71
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.67
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.66
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.66
COG4123	248	Predicted O-methyltransferase [General function pr	96.59
PRK00811	283	spermidine synthase; Provisional	96.57
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.56
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.55
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.52
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.5
PRK03612	521	spermidine synthase; Provisional	96.47
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.47
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.46
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.45
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.43
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.39
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.35
TIGR00438	188	rrmJ cell division protein FtsJ.	96.35
KOG1331	293	consensus Predicted methyltransferase [General fun	96.31
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.3
PRK07402	196	precorrin-6B methylase; Provisional	96.28
PHA03411	279	putative methyltransferase; Provisional	96.27
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.2
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.14
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.06
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.06
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.05
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.04
PRK04457	262	spermidine synthase; Provisional	95.92
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.88
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.81
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.68
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.52
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.52
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.51
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	95.41
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.37
PLN02366	308	spermidine synthase	95.36
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.33
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.32
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.09
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.92
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.9
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.57
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.5
KOG1271	227	consensus Methyltransferases [General function pre	94.42
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	94.42
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	94.32
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.26
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.24
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.15
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	93.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.94
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	93.93
COG4798	238	Predicted methyltransferase [General function pred	93.74
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	93.7
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	93.7
KOG2899	288	consensus Predicted methyltransferase [General fun	93.28
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	93.21
COG4122	219	Predicted O-methyltransferase [General function pr	92.92
PLN02672	1082	methionine S-methyltransferase	92.91
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	92.5
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.4
PRK13699	227	putative methylase; Provisional	92.39
PRK00536	262	speE spermidine synthase; Provisional	92.3
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	91.96
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	91.83
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	91.78
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	91.65
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	91.59
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	91.5
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	91.46
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.04
PLN02823	336	spermine synthase	90.71
PRK11524	284	putative methyltransferase; Provisional	90.66
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	90.24
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	89.85
PHA03412	241	putative methyltransferase; Provisional	89.51
PLN02476	278	O-methyltransferase	88.98
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	88.91
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	88.12
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	88.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	87.59
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	87.29
PLN02589	247	caffeoyl-CoA O-methyltransferase	86.92
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	86.8
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	86.36
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	86.21
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	85.74
COG2890	280	HemK Methylase of polypeptide chain release factor	85.29
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	85.22
KOG3201	201	consensus Uncharacterized conserved protein [Funct	84.1
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	83.26
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	83.21
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	82.48
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	82.12
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	81.37
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	80.26

>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]

Probab=100.00  E-value=4.4e-43  Score=309.23  Aligned_cols=233  Identities=29%  Similarity=0.361  Sum_probs=148.1

Q ss_pred             EEeecCCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCC
Q 022411           11 LALSEDKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG   88 (297)
Q Consensus        11 Lll~~~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG   88 (297)
                      |++.+. ..+.....+-...++.-.+...  ...+..+.+....+  +.++||+.+...  .|.....+....+..|+|+
T Consensus         4 l~~~l~-~~~~~~~~~~~K~~~~i~~~~ggdl~li~~~~~~~~t~--~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~   78 (257)
T KOG4020|consen    4 LLLCLT-GTTTSELAELLKAQALIKAVKGGDLFLINKVNGSVSTL--ENARYELLTPEA--ATLSGLKVKSLLRASLKPE   78 (257)
T ss_pred             eeEEec-ccchhhHHHHHHhHHhhhcccCcchhheeccccccccc--cccceeccchhh--ccccccchhhhhhcccCcc
Confidence            334344 4445566665555554322211  23344445555544  478899554433  2333125666777899999


Q ss_pred             cEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchhccccCc--cceeEeeeeecCCCCCCCCccccccCcc-----
Q 022411           89 GTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP--AEVVSFGVKGKKPTWKIGSSFAIKKAPK-----  161 (297)
Q Consensus        89 G~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~--~~~~~~~i~akKP~~~~gs~~~~~~~~~-----  161 (297)
                      |.+.+.++...    -    ..+.....+.|+.++.  |.++...  +.+        |+.....|++.++.+.+     
T Consensus        79 gtl~v~s~~g~----~----~~~l~~~~i~g~~~~~--~~s~d~~s~~ql--------kl~~~K~ss~~~q~a~k~~~~k  140 (257)
T KOG4020|consen   79 GTLSVLSHIGH----A----DDLLLFVKITGEKDYC--WISPDVSSANQL--------KLSITKKSSPSLQSASKNAAAK  140 (257)
T ss_pred             ceEehhhhccc----h----hhHHHHHHHhCCcccc--ccCccccccccc--------cccceeccCcccccccccHHHH
Confidence            99998776421    1    1455567888888763  2222211  111        33333334433332221     


Q ss_pred             cccc-----cccCCCCCccCcCCCCCccccCCCCCCCCC-CCCCCCCccCCCCCccchHHHHHHHHhcCCCccccCCCCC
Q 022411          162 SLAK-----LQVDDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQS  235 (297)
Q Consensus       162 ~~~~-----~~~ddd~dlIded~Ll~e~d~~~p~~~~~~-~C~~~~krkACknCtCGlaE~e~~~~~~~~~~~~~~~~~s  235 (297)
                      ..|.     +.+|.++|+||||+||+|||+.+|+..+.. .|++++||||||||||||||+||.|..   ......+++|
T Consensus       141 nl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kKkkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s  217 (257)
T KOG4020|consen  141 NLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKKKKACKNCTCGLAEEEEKEKS---REQISSNPKS  217 (257)
T ss_pred             HhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCcccchhhhcCCcccHHHHHhhhh---hhhhccCccc
Confidence            1222     223445799999999999999999887755 899999999999999999999997642   2233456999


Q ss_pred             CCCcc----ccccCCCCCCCCCCCCCCCCCCCCceEeecCCcce
Q 022411          236 ACGMW----TWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRH  275 (297)
Q Consensus       236 sCGnC----AFRC~~CPYlGlPaF~~~~~~~~~~~~~~~~~~~~  275 (297)
                      +||||    ||||+||||||||||||      |++|.+-+++-+
T Consensus       218 ~CGnCylGdaFrCs~CPylG~PafkP------Ge~v~ls~~~~~  255 (257)
T KOG4020|consen  218 ACGNCYLGDAFRCSGCPYLGMPAFKP------GEKVLLSDNSDK  255 (257)
T ss_pred             ccCcccccccceecCCCcCCCCCCCC------CCeEEecccccc
Confidence            99999    99999999999999985      466766555443

>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis

Probab=100.00  E-value=9.9e-38  Score=245.10  Aligned_cols=75  Identities=44%  Similarity=0.745  Sum_probs=61.5

Q ss_pred             cccCCCCCCCCCCCCCC--CCccCCCCCccchHHHHHHHHhc---------CCCccc-----cCCCCCCCCcc----ccc
Q 022411          184 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKL---------GLTMDQ-----LKNPQSACGMW----TWR  243 (297)
Q Consensus       184 ~d~~~p~~~~~~~C~~~--~krkACknCtCGlaE~e~~~~~~---------~~~~~~-----~~~~~ssCGnC----AFR  243 (297)
                      ||+++|....+.+|+++  +||||||||||||||+|+++.+.         +++.++     +.+++||||||    |||
T Consensus         1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR   80 (100)
T PF05093_consen    1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR   80 (100)
T ss_pred             CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence            68999987777899976  78999999999999998765421         222223     34589999999    999


Q ss_pred             cCCCCCCCCCCCCCC
Q 022411          244 CFPLRYMPLQGSASI  258 (297)
Q Consensus       244 C~~CPYlGlPaF~~~  258 (297)
                      |+|||||||||||||
T Consensus        81 Ca~CPYlGlPaFkpG   95 (100)
T PF05093_consen   81 CAGCPYLGLPAFKPG   95 (100)
T ss_pred             ecCCCcCCCCCCCCC
Confidence            999999999999976

It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].

>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=273.04  Aligned_cols=236  Identities=21%  Similarity=0.209  Sum_probs=132.8

Q ss_pred             ceEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc-CCCC-hHHHHHHHHhcc
Q 022411            8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HELP-GDQLLEEISRVL   85 (297)
Q Consensus         8 ~~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-~~~~-~~~~L~ei~RvL   85 (297)
                      .+|++|+.++..........+..+|.+++-...+.|- .+.-+.++|  -+.||.++.-... .|-. ....|++-+.-|
T Consensus         3 ~tV~~LT~~~~t~~~~~~K~i~~L~DNGs~~~L~~I~-kV~~LiN~~--IN~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl   79 (284)
T COG5636           3 ETVHYLTPEAQTDIKFPKKLISVLADNGSLIGLSDIY-KVDALINEI--INEPDYCWIKMDSSKLNQTVSIPLKKKKTNL   79 (284)
T ss_pred             ceeEEeCCccccchhhhhhhhheeccCccccchHHHH-HHHHHHhhh--ccCCceEEEEcccchhhccccchhhhhhccc
Confidence            4799999888877655555554444433211111111 111222333  5678888765432 2322 344577777789


Q ss_pred             cCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc-hhccccCccce--eEeeeeecCCCCCCCCccc-ccc-Cc
Q 022411           86 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR-IQLKSVVPAEV--VSFGVKGKKPTWKIGSSFA-IKK-AP  160 (297)
Q Consensus        86 KPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~-~~~kp~~~~~~--~~~~i~akKP~~~~gs~~~-~~~-~~  160 (297)
                      .|||.|-...-......       .+.....++|...+.. .|.+|-. ..+  ....++-+.--  ..+... ++. ..
T Consensus        80 ~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t~~~~~~~-~k~~t~P~~~~~~d~~--~edk~~~~~~l~S  149 (284)
T COG5636          80 QSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKETDSFKPPS-FKMTTEPKVYRVVDDL--MEDKEELRKLLRS  149 (284)
T ss_pred             CCCCcccceeccccccc-------cccchhhhcCCceeecCccccCCC-ccceecceEEeecccc--cccHHHHHHHHhh
Confidence            99999965543322111       2334455566544332 2222211 000  00000000000  000000 000 00


Q ss_pred             ccccccccCCCCCccCcCCCCCccccCCCCCCCCCCCCC--CCCccCCCCCccchHHHHHHH-------HhcCCCccccC
Q 022411          161 KSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEV--GSTRKACKNCICGRAEAEEKV-------EKLGLTMDQLK  231 (297)
Q Consensus       161 ~~~~~~~~ddd~dlIded~Ll~e~d~~~p~~~~~~~C~~--~~krkACknCtCGlaE~e~~~-------~~~~~~~~~~~  231 (297)
                      +.-.-...|+|+++|+||+||+|+.-.+-. +. ..|.+  |+|+|||||||||++|+||.+       +.+|||+++++
T Consensus       150 ~~q~~~~~dtd~~~i~edEllde~s~d~~i-~~-~ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt~Q~~~VK~Te~~~~  227 (284)
T COG5636         150 KAQYMMRKDTDPRTIMEDELLDEDSEDKAI-QR-SECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELT  227 (284)
T ss_pred             hhHhhhccCCChhhhhhhhhhcccccccee-ec-ccCCCCcchhhhhcccCCccchhhhhhhhhhhhhhhheecccccee
Confidence            000012346788999999999995322222 22 46864  789999999999999998743       45899988766


Q ss_pred             C--------CCCCCCcc----ccccCCCCCCCCCCCCCC
Q 022411          232 N--------PQSACGMW----TWRCFPLRYMPLQGSASI  258 (297)
Q Consensus       232 ~--------~~ssCGnC----AFRC~~CPYlGlPaF~~~  258 (297)
                      +        ++|+||||    ||||+||||||||||+||
T Consensus       228 e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPaf~PG  266 (284)
T COG5636         228 EIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPAFEPG  266 (284)
T ss_pred             eeeeeeccccccccccccccccceecCCCccCCCCCCCC
Confidence            5        58999999    999999999999999855

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=5.5e-13  Score=121.57  Aligned_cols=98  Identities=20%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .|.+||-|--|+              .++..|+++.|++.|+++.... ..+++|+++++++|||+|++||+|++.+.++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            366777775554              4567799999999999987654 3459999999999999999999999999999


Q ss_pred             CCC-hHHHHHHHHhcccCCcEEEEEecCCCCccc
Q 022411           71 ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGD  103 (297)
Q Consensus        71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~  103 (297)
                      +++ .+.+|+|++|||||||++++.+......+.
T Consensus       131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~  164 (238)
T COG2226         131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPV  164 (238)
T ss_pred             cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence            998 899999999999999999999987654333

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.32  E-value=1.5e-12  Score=118.44  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +..|+++.|++.|+++.... ..+|+++++|+++|||++++||+|++.+.+++++ ...+++|++|+|||||+|+|.+..
T Consensus        76 ~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen   76 VGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence            34589999999999887654 4589999999999999999999999999999988 789999999999999999999876


Q ss_pred             CC
Q 022411           98 TS   99 (297)
Q Consensus        98 ~~   99 (297)
                      ..
T Consensus       156 ~p  157 (233)
T PF01209_consen  156 KP  157 (233)
T ss_dssp             B-
T ss_pred             CC
Confidence            43

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.25  E-value=4e-11  Score=102.77  Aligned_cols=77  Identities=17%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           22 SAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .|+++.|++.|+++....    ..++.+++++++++|+++++||+|++.+.+|+++ ...+++|++|+|||||+|++.++
T Consensus         3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~   82 (160)
T PLN02232          3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF   82 (160)
T ss_pred             EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            478899999998664321    3479999999999999999999999999999887 78999999999999999999987


Q ss_pred             CC
Q 022411           97 LT   98 (297)
Q Consensus        97 ~~   98 (297)
                      ..
T Consensus        83 ~~   84 (160)
T PLN02232         83 NK   84 (160)
T ss_pred             CC
Confidence            64

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.17  E-value=1.1e-10  Score=107.80  Aligned_cols=95  Identities=21%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhh----hcCCCeEEEEccCCCCCCCCCcccEEEe
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVE----QCDPQIITQASSLSQLPVESFSIDTVLS   65 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~----~~~~~v~~~~~d~~~Lp~~d~sfD~Vls   65 (297)
                      +.+++||-|--|+               .++..|++++|+++|+++..    ....++.+++++++++|+++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            3466777774443               33455788999999987542    2245899999999999999999999999


Q ss_pred             ccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC
Q 022411           66 ISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS   99 (297)
Q Consensus        66 ~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~   99 (297)
                      .+.+|+++ +..+++|++|+|||||+|++.++...
T Consensus       152 ~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        152 GYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            99999988 88999999999999999999987643

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.16  E-value=8.9e-11  Score=107.17  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=73.6

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGT   90 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~   90 (297)
                      ++.|++-|+...|++.+.+++.+.    ...+.|+.+|++.|||++++||..+..+.+..++ ++++|+|.+|+|||||+
T Consensus       130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGr  209 (296)
T KOG1540|consen  130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGR  209 (296)
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcE
Confidence            366778899999999999887443    3459999999999999999999999999888776 89999999999999999


Q ss_pred             EEEEecCCC
Q 022411           91 ILIYKKLTS   99 (297)
Q Consensus        91 l~i~~~~~~   99 (297)
                      |++.++...
T Consensus       210 f~cLeFskv  218 (296)
T KOG1540|consen  210 FSCLEFSKV  218 (296)
T ss_pred             EEEEEcccc
Confidence            999988754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.13  E-value=4.4e-11  Score=90.99  Aligned_cols=76  Identities=26%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      +..++..|++++|++.++++...  ..+.++.++++.+|+++++||+|++...+||++ ...+++|+.|+|||||+++|
T Consensus        19 ~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   19 GASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             TCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            56667778899999999876533  345599999999999999999999999999997 78999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.10  E-value=1.1e-09  Score=100.83  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=91.7

Q ss_pred             cccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         4 ~~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      ++.|.+||.+-.|+-               ++..|+++.|++.|+++.... ..++.++.++++.+|+++++||+|+++.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            456778888755443               334577889999998876543 4588999999999999999999999999


Q ss_pred             ccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCC-cc-chH-------------HHHHHHHHHHHHCCcccccc
Q 022411           68 SSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD-KG-DVD-------------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        68 ~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g-~~~-------------~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++|+.+ ...++++++|+|||||+|++.+..... .. ...             ....++...|..+||.++..
T Consensus       155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence            888887 678999999999999999998754221 00 000             01246677788899998654

>PLN02244 tocopherol O-methyltransferase

Probab=98.98  E-value=1.5e-09  Score=103.88  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=91.4

Q ss_pred             ccCceEEEeecC-------------CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSED-------------KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~-------------~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-|--|             ..|+..|+++.|++.++++++..  ..++.++.+|+.++|+++++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            345667766443             34445578889999988765543  357999999999999999999999999998


Q ss_pred             CCCC-hHHHHHHHHhcccCCcEEEEEecCCCCc--c--ch--------HH-----------HHHHHHHHHHHCCcccccc
Q 022411           70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSDK--G--DV--------DK-----------AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g--~~--------~~-----------~~~~l~~~L~laGFv~v~~  125 (297)
                      +|++ ...++++++|+|||||+|+|.++.....  +  .+        ..           ..+++...+..+||.++..
T Consensus       197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~  276 (340)
T PLN02244        197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT  276 (340)
T ss_pred             hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence            8887 7889999999999999999987542110  0  00        00           1346677889999998765


Q ss_pred             hh
Q 022411          126 IQ  127 (297)
Q Consensus       126 ~~  127 (297)
                      ..
T Consensus       277 ~d  278 (340)
T PLN02244        277 ED  278 (340)
T ss_pred             ee
Confidence            43

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.89  E-value=4.9e-09  Score=100.47  Aligned_cols=140  Identities=16%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            7 QSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         7 ~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+||-|-.|+.              ++..|+++.|++.|+++..  ..++.++.++++.+|+++++||+|++...++++
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            456777755442              3345667889998887543  346888999999999999999999999988888


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecCCCCcc--c-hH------HHHHHHHHHHHHCCcccccchhccccCccce------
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKLTSDKG--D-VD------KAISALEGKLLLAGFLDAQRIQLKSVVPAEV------  136 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--~-~~------~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~------  136 (297)
                      + ...++++++|+|||||++++.+.......  . ..      ...+++...|..+||.+++.....+....++      
T Consensus       192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~  271 (340)
T PLN02490        192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLI  271 (340)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccce
Confidence            7 78899999999999999988764321100  0 00      0235677889999999876544333221111      


Q ss_pred             eEeeeeecCCCC
Q 022411          137 VSFGVKGKKPTW  148 (297)
Q Consensus       137 ~~~~i~akKP~~  148 (297)
                      ..+.++++||.-
T Consensus       272 ~~~~v~~~k~~~  283 (340)
T PLN02490        272 MGCSVTGVKPAS  283 (340)
T ss_pred             eeEEEEEecccc
Confidence            245677888764

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.89  E-value=5.9e-09  Score=96.32  Aligned_cols=121  Identities=16%  Similarity=0.185  Sum_probs=88.2

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-|-.|+             .++..|+++.|++.|+++... ..++.+..+++..+|+++++||+|++...++|
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h  129 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH  129 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence            3456777764443             334456678899998876543 45799999999999999999999999877766


Q ss_pred             CC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHH--------------HHHHHHHHHHHCCcccccch
Q 022411           72 LP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--------------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        72 ~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~--------------~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++   ...++++++|+|||||+|++.++.......+..              ....+...|..+||.++...
T Consensus       130 ~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~  201 (263)
T PTZ00098        130 LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK  201 (263)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence            64   478999999999999999999875332111111              12466778899999887643

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=6.8e-09  Score=92.44  Aligned_cols=94  Identities=18%  Similarity=0.285  Sum_probs=78.2

Q ss_pred             CccChHHHHHHHHHHHHHHhh-hcCCCeE-EEEccCCCCC-CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVE-QCDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~-~~~~~v~-~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      -.||..|..+.|-+++.+.++ +...++. |+.++.++|| +++.|||+|+..+.++... +.+.|+++.|+|||||+++
T Consensus       100 ~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~ii  179 (252)
T KOG4300|consen  100 NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRII  179 (252)
T ss_pred             ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEE
Confidence            345667888999999987654 4567777 9999999999 9999999999999888776 7899999999999999999


Q ss_pred             EEecCCCCccchHHHHHH
Q 022411           93 IYKKLTSDKGDVDKAISA  110 (297)
Q Consensus        93 i~~~~~~~~g~~~~~~~~  110 (297)
                      +.++..+..+.+...|++
T Consensus       180 fiEHva~~y~~~n~i~q~  197 (252)
T KOG4300|consen  180 FIEHVAGEYGFWNRILQQ  197 (252)
T ss_pred             EEecccccchHHHHHHHH
Confidence            999998765555554443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.83  E-value=1.9e-08  Score=90.19  Aligned_cols=80  Identities=21%  Similarity=0.269  Sum_probs=67.3

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ++..|+++.|++.++++.... ..++.++.+++..+|+++++||+|++.+.+++++ ...++++++|+|+|||++++.+.
T Consensus        73 v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752        73 VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            345567789999988776443 4579999999999999999999999999888887 78899999999999999998876


Q ss_pred             CC
Q 022411           97 LT   98 (297)
Q Consensus        97 ~~   98 (297)
                      ..
T Consensus       153 ~~  154 (231)
T TIGR02752       153 SQ  154 (231)
T ss_pred             CC
Confidence            54

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.75  E-value=3.9e-08  Score=97.71  Aligned_cols=108  Identities=18%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.|+++......++.+..+|+..+|+++++||+|++..+++|++ +..++++++|+|||||+|++.++
T Consensus       291 ~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        291 HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            34566888999999987765555679999999999999999999999999888888 78999999999999999999876


Q ss_pred             CCCCc---cchH----------HHHHHHHHHHHHCCcccccc
Q 022411           97 LTSDK---GDVD----------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        97 ~~~~~---g~~~----------~~~~~l~~~L~laGFv~v~~  125 (297)
                      .....   ....          ...+.+...+..+||..+..
T Consensus       371 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~  412 (475)
T PLN02336        371 CRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA  412 (475)
T ss_pred             ccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence            53211   0000          11345677888899987643

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.69  E-value=1.5e-08  Score=92.23  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++..|+++.|++.++++.    ..+.++.+|++.+|+++++||+|+++..+||++ +..++.+++|+|||||.|++..+.
T Consensus        67 v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258         67 VTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             EEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            345577889999887653    235678999999999999999999999999987 789999999999999999999887


Q ss_pred             CCCcc
Q 022411           98 TSDKG  102 (297)
Q Consensus        98 ~~~~g  102 (297)
                      .++..
T Consensus       143 ~~~~~  147 (251)
T PRK10258        143 QGSLP  147 (251)
T ss_pred             CCchH
Confidence            65443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.66  E-value=3.3e-08  Score=94.15  Aligned_cols=81  Identities=12%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .|+..|++++|++.|+.++...  ..++.+++++++.+|+.+++||+|++..+++|+. +..+++++.|+|||||.+++.
T Consensus       155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            4556689999999998765332  3479999999999998889999999999999998 889999999999999999998


Q ss_pred             ecCC
Q 022411           95 KKLT   98 (297)
Q Consensus        95 ~~~~   98 (297)
                      +...
T Consensus       235 t~nr  238 (322)
T PLN02396        235 TINR  238 (322)
T ss_pred             ECCc
Confidence            7643

>TIGR00740 methyltransferase, putative

Probab=98.58  E-value=1.6e-07  Score=84.96  Aligned_cols=77  Identities=13%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ++..|+++.|++.|+++....  ..++.++.+++..++++  .||+|++.+++||++   ...++++++|+|||||.|++
T Consensus        82 v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i  159 (239)
T TIGR00740        82 IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  159 (239)
T ss_pred             EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            445577899999998876543  34789999999998875  489999999999987   26799999999999999999


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      .++.
T Consensus       160 ~d~~  163 (239)
T TIGR00740       160 SEKF  163 (239)
T ss_pred             eecc
Confidence            9764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.53  E-value=6.5e-08  Score=88.55  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      ..|+..|++++|++.|+++....  ..++.++.+++..++ +.+++||+|++..+++|+. +..++.++.|+|||||+|+
T Consensus        67 ~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~  146 (255)
T PRK11036         67 HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALS  146 (255)
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence            34556799999999998876543  457899999998774 6678999999999999987 7889999999999999998


Q ss_pred             EEecC
Q 022411           93 IYKKL   97 (297)
Q Consensus        93 i~~~~   97 (297)
                      +..+.
T Consensus       147 i~~~n  151 (255)
T PRK11036        147 LMFYN  151 (255)
T ss_pred             EEEEC
Confidence            87544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.50  E-value=4.4e-07  Score=86.41  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             cChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      |...|.+..|+.+++.....  ...++.++.++++.+|+ +++||+|++..+++|.. +..++++++|+|+|||.|++..
T Consensus       148 V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        148 VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            44556667777665432222  24579999999999998 78999999998888877 7899999999999999998875


Q ss_pred             cCCCCcc-----chH-----------HHHHHHHHHHHHCCcccccchh
Q 022411           96 KLTSDKG-----DVD-----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        96 ~~~~~~g-----~~~-----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      ......+     +..           .+...+...|..+||.++....
T Consensus       227 ~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        227 LVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             EEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence            3211000     000           1235778889999999886543

>PRK08317 hypothetical protein; Provisional

Probab=98.50  E-value=4.5e-07  Score=80.33  Aligned_cols=121  Identities=22%  Similarity=0.209  Sum_probs=86.0

Q ss_pred             ccCceEEEeecCCcc---------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDKIL---------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~~v---------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-+--|+..               +..|+++.+++.++++......++.+..+++..+|+++++||+|++...+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~   97 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL   97 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence            345677777554333               23455567777777654444668999999999999999999999999988


Q ss_pred             CCCC-hHHHHHHHHhcccCCcEEEEEecCCCC------ccc-hH---H----------HHHHHHHHHHHCCcccccc
Q 022411           70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSD------KGD-VD---K----------AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~------~g~-~~---~----------~~~~l~~~L~laGFv~v~~  125 (297)
                      +++. +..++++++++|||||.+++.++....      ... ..   .          ....+...|..+||.++..
T Consensus        98 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  174 (241)
T PRK08317         98 QHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEV  174 (241)
T ss_pred             hccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeE
Confidence            8887 788999999999999999988753111      000 00   0          1134667788999987653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.47  E-value=2e-07  Score=78.50  Aligned_cols=81  Identities=21%  Similarity=0.359  Sum_probs=69.2

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l   91 (297)
                      +..++..|++++|++.|+++++.. ..++++.++|+.+++  ++ +.||+|++..+++++. ...+++++.+.|++||.+
T Consensus        28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~  106 (152)
T PF13847_consen   28 GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGIL  106 (152)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEE
T ss_pred             CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEE
Confidence            344556688899999999876554 458999999999987  66 8999999999999988 778999999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++.+..
T Consensus       107 i~~~~~  112 (152)
T PF13847_consen  107 IISDPN  112 (152)
T ss_dssp             EEEEEE
T ss_pred             EEEECC
Confidence            998875

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.46  E-value=5.3e-07  Score=82.37  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=64.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|.++.|++.|+++.+..  ..++.++.+++..+|++  .||+|++++++|+++.   ..++++++|+|||||.|+
T Consensus        84 ~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~  161 (247)
T PRK15451         84 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV  161 (247)
T ss_pred             eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            3445578899999999887543  34799999999988865  4999999999998872   579999999999999999


Q ss_pred             EEecC
Q 022411           93 IYKKL   97 (297)
Q Consensus        93 i~~~~   97 (297)
                      +.+..
T Consensus       162 l~e~~  166 (247)
T PRK15451        162 LSEKF  166 (247)
T ss_pred             EEEec
Confidence            98854

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.40  E-value=8.1e-07  Score=78.88  Aligned_cols=78  Identities=21%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +..|++..|++.++++..   .++.++.++++.+|+++++||+|++...+||+. +..++.++.++|||||.+++..+..
T Consensus        62 ~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072        62 IALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             EEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            455667788887766543   478899999999999999999999999999986 7889999999999999999988765


Q ss_pred             CC
Q 022411           99 SD  100 (297)
Q Consensus        99 ~~  100 (297)
                      ..
T Consensus       139 ~~  140 (240)
T TIGR02072       139 GT  140 (240)
T ss_pred             cC
Confidence            43

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.40  E-value=2e-06  Score=76.56  Aligned_cols=77  Identities=25%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           21 VSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..|+++.+++.++++...  ...++.+..+++..++++.++||+|++...+|+++ ...++.++.++|+|||++++.+..
T Consensus        81 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216         81 GLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             EEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            445567888888776543  34578999999998888888999999988888887 788999999999999999987654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.39  E-value=6.9e-07  Score=79.63  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=79.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .++..++++.|++.++++...  ...++.+..+|+...|++ ++||+|++...++++. ...++++++++|||||++++.
T Consensus        25 ~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  103 (224)
T smart00828       25 QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLA  103 (224)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence            344556788888888877654  345789999998777765 4899999999888887 789999999999999999998


Q ss_pred             ecCCCCccc--------hHHHHHHHHHHHHHCCcccccch
Q 022411           95 KKLTSDKGD--------VDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        95 ~~~~~~~g~--------~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      +........        ......++...+..+||..+...
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828      104 DFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             EcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            764211000        01123467778889999976544

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.37  E-value=3.4e-07  Score=83.74  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.|+++      ++.++.++++.++ ++++||+|+++..+||++ +..++++++|+|||||++++..+
T Consensus        55 ~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         55 VIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             EEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence            344557778888887652      5788999998875 567999999999999998 78999999999999999998754


Q ss_pred             C
Q 022411           97 L   97 (297)
Q Consensus        97 ~   97 (297)
                      .
T Consensus       128 ~  128 (255)
T PRK14103        128 G  128 (255)
T ss_pred             C
Confidence            3

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.32  E-value=4.7e-07  Score=71.02  Aligned_cols=73  Identities=23%  Similarity=0.352  Sum_probs=61.3

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGG   89 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG   89 (297)
                      ..++..|++++|++.++++......++.++++|+.++++.+++||+|++. .+++|+.   ...++++++++|||||
T Consensus        25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45557799999999999877666669999999999999999999999995 4477777   3789999999999998

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.29  E-value=5e-06  Score=73.22  Aligned_cols=76  Identities=24%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..|+.+.+++.++++.. ...++.++.+++..++++.+.||+|++...+|+.+ ...+++++.++|+|||++++.+..
T Consensus        69 ~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934        69 GVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            44556677777766543 44578899999999988888999999998888887 788999999999999999987753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.29  E-value=1.2e-06  Score=77.22  Aligned_cols=80  Identities=14%  Similarity=0.042  Sum_probs=63.7

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~   92 (297)
                      +..|+..|+++.|++.++++++..+.++.+..+++...+++ .+||+|+++..+|+++   ...++++++|+|||||+++
T Consensus        52 g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477        52 GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence            55667778999999998877655444577778888777765 5799999999888886   3689999999999999977


Q ss_pred             EEec
Q 022411           93 IYKK   96 (297)
Q Consensus        93 i~~~   96 (297)
                      +.++
T Consensus       131 i~~~  134 (195)
T TIGR00477       131 IVAA  134 (195)
T ss_pred             EEEe
Confidence            6654

Part of a tellurite-reducing operon tehA and tehB

>TIGR00452 methyltransferase, putative

Probab=98.29  E-value=1.5e-06  Score=82.56  Aligned_cols=107  Identities=18%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             cChHHHHHHHHHHHHHHhh--hcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~--~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|.++.|+.+++....  ....++.+...+++.+|.. .+||+|++..+++|++ +..+|++++|+|||||.|++.+
T Consensus       147 v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       147 LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            4455777788876543211  2245788888899999864 4899999999888887 7899999999999999999875


Q ss_pred             cC-CCCc-------cchH--------HHHHHHHHHHHHCCcccccch
Q 022411           96 KL-TSDK-------GDVD--------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        96 ~~-~~~~-------g~~~--------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .. .+..       +...        .+...+...|..+||.+++..
T Consensus       226 l~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~  272 (314)
T TIGR00452       226 LVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL  272 (314)
T ss_pred             EEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence            32 1110       0000        023567788999999988654

Known examples to date are restricted to the proteobacteria.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.28  E-value=3.9e-07  Score=82.91  Aligned_cols=84  Identities=12%  Similarity=0.179  Sum_probs=74.4

Q ss_pred             cCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411           15 EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        15 ~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .|+.||..|+++++++.|+..+......+.+.+..++.+-...++||+|++.-+++|++ ++.++..+.+.+||||.+++
T Consensus        80 ~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~  159 (243)
T COG2227          80 LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL  159 (243)
T ss_pred             CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEE
Confidence            37788899999999999998776667778899999988876668999999999999999 88999999999999999999


Q ss_pred             EecCC
Q 022411           94 YKKLT   98 (297)
Q Consensus        94 ~~~~~   98 (297)
                      ++...
T Consensus       160 STinr  164 (243)
T COG2227         160 STINR  164 (243)
T ss_pred             ecccc
Confidence            98764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.27  E-value=1.6e-06  Score=76.60  Aligned_cols=79  Identities=19%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l   91 (297)
                      +..|+..|+++.|++.+++++... ..++.+..+++..++++ .+||+|+++..+|+++   ...+++++.|+|||||++
T Consensus        52 g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~  130 (197)
T PRK11207         52 GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN  130 (197)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence            445667789999999998766543 34688889999888775 5799999999888876   368999999999999997


Q ss_pred             EEEe
Q 022411           92 LIYK   95 (297)
Q Consensus        92 ~i~~   95 (297)
                      ++..
T Consensus       131 ~~~~  134 (197)
T PRK11207        131 LIVA  134 (197)
T ss_pred             EEEE
Confidence            6543

>PRK05785 hypothetical protein; Provisional

Probab=98.26  E-value=2e-06  Score=77.86  Aligned_cols=63  Identities=19%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPG   88 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPG   88 (297)
                      ++..|++++|++.|+++       ..+++++++++|+++++||+|++.+.+||++ +..+++|++|+|||.
T Consensus        77 v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785         77 VVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             EEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            44557788999988753       1357889999999999999999999999987 789999999999994

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.23  E-value=2.2e-06  Score=77.84  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=67.2

Q ss_pred             CeEEEEccCCCC--CCCCCcccEEEeccc---c-CCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHH
Q 022411           42 QIITQASSLSQL--PVESFSIDTVLSISS---S-HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL  115 (297)
Q Consensus        42 ~v~~~~~d~~~L--p~~d~sfD~Vls~~~---~-~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L  115 (297)
                      .|..+.||+.++  .|+|+|||+|+.--.   . .++....++.|++|+|||||+++.+...+++...-......+.+.|
T Consensus       186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL  265 (287)
T COG2521         186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL  265 (287)
T ss_pred             ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH
Confidence            567788887654  588999999987532   1 1344689999999999999999988876653211011223677889


Q ss_pred             HHCCcccccchhccccCccceeEeeeeecCC
Q 022411          116 LLAGFLDAQRIQLKSVVPAEVVSFGVKGKKP  146 (297)
Q Consensus       116 ~laGFv~v~~~~~kp~~~~~~~~~~i~akKP  146 (297)
                      ...||..+....         ..+++.|.||
T Consensus       266 r~vGF~~v~~~~---------~~~gv~A~k~  287 (287)
T COG2521         266 RRVGFEVVKKVR---------EALGVVAVKP  287 (287)
T ss_pred             HhcCceeeeeeh---------hccceEEecC
Confidence            999999876543         1235667665

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.20  E-value=2e-06  Score=67.83  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             CCccChHHHHHHHHHHHHHHhh--hcCCCeEEEEccC-CCCCCCCCcccEEEecc-ccCCCC----hHHHHHHHHhcccC
Q 022411           16 DKILPVSAVLNAIRDLGDEAVE--QCDPQIITQASSL-SQLPVESFSIDTVLSIS-SSHELP----GDQLLEEISRVLKP   87 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~--~~~~~v~~~~~d~-~~Lp~~d~sfD~Vls~~-~~~~~~----~~~~L~ei~RvLKP   87 (297)
                      +..++..|++++|++.|++++.  ....++.++++++ ....+ ...||+|++.. .++++.    ...+++++.+.|+|
T Consensus        25 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p  103 (112)
T PF12847_consen   25 GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKP  103 (112)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCC
Confidence            4445556788899999998873  3467999999999 33332 34599999988 555333    36889999999999


Q ss_pred             CcEEEEEe
Q 022411           88 GGTILIYK   95 (297)
Q Consensus        88 GG~l~i~~   95 (297)
                      ||+|+|..
T Consensus       104 gG~lvi~~  111 (112)
T PF12847_consen  104 GGRLVINT  111 (112)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999875

...

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.19  E-value=4.3e-06  Score=74.26  Aligned_cols=99  Identities=15%  Similarity=0.011  Sum_probs=73.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccC-CCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHhc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSL-SQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRV   84 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~-~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~Rv   84 (297)
                      .++..|+++.|++.++++.... ..++.++++++ +.++  +++++||+|++++...|..         ...++++++++
T Consensus        66 ~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~  145 (202)
T PRK00121         66 NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK  145 (202)
T ss_pred             cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHH
Confidence            4556688889999988766443 36799999999 7777  7889999999987554432         36789999999


Q ss_pred             ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      |||||.|++.....       .....+...+..+||...
T Consensus       146 LkpgG~l~i~~~~~-------~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        146 LKPGGEIHFATDWE-------GYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             cCCCCEEEEEcCCH-------HHHHHHHHHHHhCccccc
Confidence            99999999876432       223356667778887643

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.19  E-value=1.4e-05  Score=70.48  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=72.1

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +..++..|.++.|++.|+++++.. ..+++++.+++..++. .++||+|++...   .....++.++++.|||||++++.
T Consensus        69 ~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107         69 ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEE
Confidence            344556688999999999877654 3459999999998877 779999998752   23578999999999999999988


Q ss_pred             ecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ....     ..   ..+......+|..-..
T Consensus       145 ~~~~-----~~---~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        145 KGRD-----PE---EEIAELPKALGGKVEE  166 (187)
T ss_pred             eCCC-----hH---HHHHHHHHhcCceEee
Confidence            6432     11   1455556666887443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.19  E-value=1.4e-06  Score=80.80  Aligned_cols=78  Identities=12%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhh----------------------------cCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ----------------------------CDPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~----------------------------~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      .++..|+++.|++.|++++-.                            ...+|.|.++|+...+++.++||+|++.+++
T Consensus       134 ~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl  213 (264)
T smart00138      134 KILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL  213 (264)
T ss_pred             EEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH
Confidence            455678999999999875310                            1136899999999988888999999999999


Q ss_pred             CCCC-h--HHHHHHHHhcccCCcEEEEEe
Q 022411           70 HELP-G--DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        70 ~~~~-~--~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      +|++ .  ..++++++++|+|||+|++..
T Consensus       214 ~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      214 IYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             HhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            9997 2  479999999999999999754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.16  E-value=2.2e-06  Score=71.42  Aligned_cols=82  Identities=26%  Similarity=0.338  Sum_probs=59.0

Q ss_pred             eEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCC----------ccchH------
Q 022411           43 IITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD----------KGDVD------  105 (297)
Q Consensus        43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~----------~g~~~------  105 (297)
                      +.....+....++++++||+|+++.+++|++ +..+|++++++|||||.+++.++....          .....      
T Consensus        62 ~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (161)
T PF13489_consen   62 VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHF  141 (161)
T ss_dssp             SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEE
T ss_pred             hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceecc
Confidence            3344433445566789999999999999998 899999999999999999999986421          00000      


Q ss_pred             HHHHHHHHHHHHCCccccc
Q 022411          106 KAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus       106 ~~~~~l~~~L~laGFv~v~  124 (297)
                      ...+++...+..+||..++
T Consensus       142 ~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  142 FSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             BBHHHHHHHHHHTTEEEEE
T ss_pred             CCHHHHHHHHHHCCCEEEE
Confidence            0124667777888877654

...

>PRK04266 fibrillarin; Provisional

Probab=98.12  E-value=2.2e-05  Score=71.27  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=76.5

Q ss_pred             cccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC----CCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L----p~~d~sfD~Vls   65 (297)
                      ++.|.+||-+-.|+..              ...|+++.|++...+++.. ..++.++.+|+...    ++. ++||+|++
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILADARKPERYAHVV-EKVDVIYQ  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence            3456777777665433              2336667777766655433 36788999988642    233 46999996


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEE------ecCCCCccchHHHHHHHHHHHHHCCcccccchhccc
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKS  130 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~------~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp  130 (297)
                      .....| ....++.+++|+|||||+|+|.      ++..    ......+.....+..+||..++.....|
T Consensus       148 d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~----~~~~~~~~~~~~l~~aGF~~i~~~~l~p  213 (226)
T PRK04266        148 DVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK----DPKEIFKEEIRKLEEGGFEILEVVDLEP  213 (226)
T ss_pred             CCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcC----CHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            543211 1245689999999999999993      3322    1112234556789999999887665444

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.12  E-value=3.7e-06  Score=76.69  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.|+++.    .++.++.+++..++ +..+||+|+++..+||++ ...++++++++|||||++++..+
T Consensus        57 ~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         57 RITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             EEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            3445577888999887653    46888999998775 456999999999999997 78899999999999999998753

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.11  E-value=6.3e-06  Score=75.91  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=64.6

Q ss_pred             CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           42 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      +-.++.+|+.++|++|+|.|+++.+.+++......++.|++|+|||||.|+|.+....    + .....+.+.+...||-
T Consensus       211 ~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR----f-~dv~~f~r~l~~lGF~  285 (325)
T KOG3045|consen  211 NERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR----F-SDVKGFVRALTKLGFD  285 (325)
T ss_pred             CCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh----c-ccHHHHHHHHHHcCCe
Confidence            4456678999999999999999998888877778899999999999999999987642    1 1233678899999998


Q ss_pred             cccc
Q 022411          122 DAQR  125 (297)
Q Consensus       122 ~v~~  125 (297)
                      ..+.
T Consensus       286 ~~~~  289 (325)
T KOG3045|consen  286 VKHK  289 (325)
T ss_pred             eeeh
Confidence            6554

>PRK06922 hypothetical protein; Provisional

Probab=98.11  E-value=2.9e-06  Score=87.22  Aligned_cols=78  Identities=24%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC--------------hHHHHHHHHh
Q 022411           20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP--------------GDQLLEEISR   83 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~--------------~~~~L~ei~R   83 (297)
                      +..|+++.|++.|+++......++.++.+|+.++|  +++++||+|++++.+|++.              ...++++++|
T Consensus       446 tGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R  525 (677)
T PRK06922        446 YGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE  525 (677)
T ss_pred             EEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH
Confidence            34577888999998765544567888899998888  8899999999998887541              3689999999


Q ss_pred             cccCCcEEEEEecC
Q 022411           84 VLKPGGTILIYKKL   97 (297)
Q Consensus        84 vLKPGG~l~i~~~~   97 (297)
                      +|||||++++.+..
T Consensus       526 VLKPGGrLII~D~v  539 (677)
T PRK06922        526 VLKPGGRIIIRDGI  539 (677)
T ss_pred             HcCCCcEEEEEeCc
Confidence            99999999998753

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.11  E-value=3.5e-06  Score=77.97  Aligned_cols=71  Identities=24%  Similarity=0.328  Sum_probs=57.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++..|++..|++.|+++    .+++.+.++++.++|+++++||+|++.+..      ..+.|++|+|||||+|++..+..
T Consensus       115 v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        115 LFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             EEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeCCC
Confidence            34567788888887653    467889999999999999999999987642      24689999999999999988765


Q ss_pred             C
Q 022411           99 S   99 (297)
Q Consensus        99 ~   99 (297)
                      .
T Consensus       185 ~  185 (272)
T PRK11088        185 R  185 (272)
T ss_pred             c
Confidence            3

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.09  E-value=1.4e-05  Score=75.04  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+ +.+++.++++++..  ..+++++.+|+...+++.  +|+|+....+|.+..   ..++++++++|||||+|+|.+
T Consensus       178 ~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       178 ILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3343 56778877765543  457999999997666654  699988877886652   468999999999999999998


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      ..
T Consensus       255 ~~  256 (306)
T TIGR02716       255 MV  256 (306)
T ss_pred             ec
Confidence            63

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.06  E-value=7.2e-06  Score=76.60  Aligned_cols=80  Identities=16%  Similarity=0.095  Sum_probs=64.6

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~   92 (297)
                      +..|+..|.++.|++.+++++.....++.+...|+...++ +++||+|++..++|+++   ...+++++.|+|+|||+++
T Consensus       142 g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l  220 (287)
T PRK12335        142 GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL  220 (287)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            4455666888999999888776655578888888887666 67899999999888876   3679999999999999977


Q ss_pred             EEec
Q 022411           93 IYKK   96 (297)
Q Consensus        93 i~~~   96 (297)
                      +...
T Consensus       221 ~v~~  224 (287)
T PRK12335        221 IVCA  224 (287)
T ss_pred             EEEe
Confidence            6543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.01  E-value=1.5e-05  Score=70.17  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=70.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC---CCCCcccEEEeccccCCCC---------hHHHHHHHHhc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP---VESFSIDTVLSISSSHELP---------GDQLLEEISRV   84 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp---~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~Rv   84 (297)
                      .+...|++..|++.|+.++... ..++.++.+++..++   +++++||.|++++...|..         ...++++++|+
T Consensus        42 ~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~  121 (194)
T TIGR00091        42 NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANV  121 (194)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHH
Confidence            4455677888999988776544 458999999997654   5677999999988655532         15789999999


Q ss_pred             ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-ccccc
Q 022411           85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ  124 (297)
Q Consensus        85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v~  124 (297)
                      |||||.|++.....       .....+...+...| |..+.
T Consensus       122 LkpgG~l~~~td~~-------~~~~~~~~~~~~~~~f~~~~  155 (194)
T TIGR00091       122 LKKGGVIHFKTDNE-------PLFEDMLKVLSENDLFENTS  155 (194)
T ss_pred             hCCCCEEEEEeCCH-------HHHHHHHHHHHhCCCeEecc
Confidence            99999998876432       11223444454454 77653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.01  E-value=6.9e-06  Score=73.61  Aligned_cols=78  Identities=23%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             eEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           43 IITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      -.+.++|+.++|++++++|+++...++........+.|.+|+|||||.|.|.+....- .    ..+...+.+...||..
T Consensus       106 ~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-~----~~~~F~~~~~~~GF~~  180 (219)
T PF05148_consen  106 PRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-E----NVKQFIKALKKLGFKL  180 (219)
T ss_dssp             TTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-----HHHHHHHHHCTTEEE
T ss_pred             CCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-c----CHHHHHHHHHHCCCeE
Confidence            3466789999999999999999998888777678999999999999999999986431 1    2236777888899987


Q ss_pred             ccc
Q 022411          123 AQR  125 (297)
Q Consensus       123 v~~  125 (297)
                      ...
T Consensus       181 ~~~  183 (219)
T PF05148_consen  181 KSK  183 (219)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.00  E-value=1.3e-05  Score=79.62  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=77.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCC--CCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~--~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i   93 (297)
                      ++..|+++.|++.++.. .....++.++++++.  .+|+++++||+|++...+||++.   ..++++++|+|||||++++
T Consensus        62 v~giD~s~~~l~~a~~~-~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336         62 VIALDFIESVIKKNESI-NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             EEEEeCCHHHHHHHHHH-hccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            34557888888876542 223567899999985  57888999999999999999873   6899999999999999999


Q ss_pred             EecCCCCccc------hHH--HHHHHHHHHHHCCcccccc
Q 022411           94 YKKLTSDKGD------VDK--AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        94 ~~~~~~~~g~------~~~--~~~~l~~~L~laGFv~v~~  125 (297)
                      .+......+.      +.+  ....+.+.+..+||.....
T Consensus       141 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  180 (475)
T PLN02336        141 RESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG  180 (475)
T ss_pred             EeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence            8754221111      111  2346777889999987543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.99  E-value=2.8e-05  Score=67.31  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=72.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----------------------hH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD   75 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----------------------~~   75 (297)
                      .++..|+++.|++.++++......++.+..+|+...+  ..+||+|+++..+++.+                      ..
T Consensus        43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (179)
T TIGR00537        43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVID  120 (179)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHH
Confidence            4556688899999998877655557888888886654  45899999997665443                      14


Q ss_pred             HHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      .++.++.|+|||||++++.......       ...+...|...||....
T Consensus       121 ~~l~~~~~~Lk~gG~~~~~~~~~~~-------~~~~~~~l~~~gf~~~~  162 (179)
T TIGR00537       121 RFLDELPEILKEGGRVQLIQSSLNG-------EPDTFDKLDERGFRYEI  162 (179)
T ss_pred             HHHHhHHHhhCCCCEEEEEEeccCC-------hHHHHHHHHhCCCeEEE
Confidence            5799999999999999988764321       12556678889997543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.97  E-value=1.2e-06  Score=68.17  Aligned_cols=75  Identities=20%  Similarity=0.242  Sum_probs=43.3

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-C-CCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-V-ESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~-~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l   91 (297)
                      ..++.-|+++.|+++++++.... ..+............ . ..++||+|++..++||++ ...+++.++++|||||+|
T Consensus        21 ~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   21 ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            34456677888887777765543 334444433333221 1 225999999999999997 789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.97  E-value=3e-05  Score=67.91  Aligned_cols=99  Identities=17%  Similarity=0.085  Sum_probs=70.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .|+..|.++.|++.+++++++. ..++.++.++++.++ ..++||+|++.. +++  ...++++++++|+|||++++...
T Consensus        68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~--~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138        68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS--LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC--HHHHHHHHHHhcCCCCEEEEEcC
Confidence            3556688889999888776544 346999999999875 357999999876 332  45678899999999999998753


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ..    . ...+..+...+...||..++.
T Consensus       144 ~~----~-~~~~~~~~e~~~~~~~~~~~~  167 (181)
T TIGR00138       144 KK----Y-LDEIEEAKRKCQVLGVEPLEV  167 (181)
T ss_pred             CC----c-HHHHHHHHHhhhhcCceEeec
Confidence            22    1 122224445666778886653

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.87  E-value=6.2e-05  Score=67.53  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC
Q 022411            7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELP   73 (297)
Q Consensus         7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~   73 (297)
                      +.+||-+-.|+.            ++..|+.+.+++.++++.......+.+...++..++ ...+.||+|++...+++.+
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~  128 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP  128 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence            456777654433            334466678888887765544446778888887664 3457899999988888877


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       +..++..+.++|+|||++++..+.
T Consensus       129 ~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        129 DPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEecC
Confidence             788999999999999999988654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.84  E-value=1.4e-05  Score=72.03  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             ecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           14 SEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        14 ~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      |.++.++..|-+.+|++.|++    ..++++|..+|+.+.. +...+|+++++.++||++ -..+|..+...|.|||.|.
T Consensus        52 wP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LA  126 (257)
T COG4106          52 WPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLA  126 (257)
T ss_pred             CCCCeEeeccCCHHHHHHHHH----hCCCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEE
Confidence            889999999999999998854    4688999999999884 567899999999999999 5789999999999999999


Q ss_pred             EEecCC
Q 022411           93 IYKKLT   98 (297)
Q Consensus        93 i~~~~~   98 (297)
                      ++-+..
T Consensus       127 VQmPdN  132 (257)
T COG4106         127 VQMPDN  132 (257)
T ss_pred             EECCCc
Confidence            987653

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.83  E-value=5e-05  Score=67.45  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHhhhcCC-CeEEEEccCCCCCCC-CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~-~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..|+++.|++.++.+...... ++.+..+++..++.. .++||+|++...++++. +..+++++.++|+|||.+++....
T Consensus        72 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983        72 GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            345667888888776554433 688888888877655 37899999998888887 788999999999999999987653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.82  E-value=3.5e-05  Score=72.67  Aligned_cols=76  Identities=9%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             cChHHHHHHHHHHHHHHhhh---cCCCeEEEEccCCCCCCCCCcccEEEeccccCCC--C-hHHHHHHHHhcccCCcEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQ---CDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--P-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~---~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~--~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      ++-.|..+++.+.|++.+..   ...++.|..+|+.+++-....||+|++. ++|++  . ...++.++++.|+|||.|+
T Consensus       152 ~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lv  230 (296)
T PLN03075        152 FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLM  230 (296)
T ss_pred             EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEE
Confidence            34557888999999987643   2457999999998764345789999999 67766  2 6899999999999999999


Q ss_pred             EEe
Q 022411           93 IYK   95 (297)
Q Consensus        93 i~~   95 (297)
                      +..
T Consensus       231 lr~  233 (296)
T PLN03075        231 LRS  233 (296)
T ss_pred             Eec
Confidence            876

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.78  E-value=7.7e-05  Score=71.04  Aligned_cols=95  Identities=20%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC--------C-C-hHHHHHHHHhcccCCc
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE--------L-P-GDQLLEEISRVLKPGG   89 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~--------~-~-~~~~L~ei~RvLKPGG   89 (297)
                      ..|+.+.|++.++.++++. ..++.+..+|+.++|+.+++||+|+++..+..        . . ...++.++.|+|||||
T Consensus       209 g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG  288 (329)
T TIGR01177       209 GCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEG  288 (329)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCc
Confidence            4577889999988876553 34578889999999998899999999743211        1 1 3678999999999999


Q ss_pred             EEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           90 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        90 ~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++++..+...          .+...+..+|| .+...
T Consensus       289 ~lv~~~~~~~----------~~~~~~~~~g~-i~~~~  314 (329)
T TIGR01177       289 WIVYAVPTRI----------DLESLAEDAFR-VVKRF  314 (329)
T ss_pred             EEEEEEcCCC----------CHHHHHhhcCc-chhee
Confidence            9988876431          34456888999 55443

This family is found exclusively in the Archaea.

>PTZ00146 fibrillarin; Provisional

Probab=97.77  E-value=0.0008  Score=63.42  Aligned_cols=126  Identities=17%  Similarity=0.109  Sum_probs=74.1

Q ss_pred             cccCceEEEeecCCccC---hH------------HHHHHHHHHHHHHhhhcCCCeEEEEccCCC---CCCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---~~------------dlse~m~~~A~~~~~~~~~~v~~~~~d~~~---Lp~~d~sfD~Vls   65 (297)
                      ++.|.+||.|--++-.+   +.            |++++|.+.....+. ...+|.++.+|+..   +++...+||+|++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            56778888886544333   22            222332222222111 12578888888753   2223468999999


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEEecCCC-Cccc-hHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS-DKGD-VDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~-~~g~-~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      .... ..+...++.++.++|||||+|+|...... ..+. +...+++-...|..+||..++.....|.
T Consensus       209 Dva~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py  275 (293)
T PTZ00146        209 DVAQ-PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF  275 (293)
T ss_pred             eCCC-cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence            8742 11245677799999999999999432221 1122 2333333236789999998877665544

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.68  E-value=0.00013  Score=65.32  Aligned_cols=86  Identities=13%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      +.|++||-+-.|+               .++..|+.++|.+.|+++.+.. ..++.++.+|+...+.+...||+|++...
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~  154 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA  154 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence            4567788776553               3334567789999998877654 45799999999876667789999998776


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++++     ..+++.|||||+|++..
T Consensus       155 ~~~~~-----~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        155 GPDIP-----KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cccch-----HHHHHhhCCCcEEEEEE
Confidence            55433     46788999999998754

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.65  E-value=3e-05  Score=70.78  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCc-EEEEEecC
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL   97 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG-~l~i~~~~   97 (297)
                      ..|++++|++.|.+.-...  +........++..|-=.++|+|+|++...+|||..+.++++++|+||+.| .+.++...
T Consensus        60 atD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen   60 ATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             eecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            4488899999887542222  22233333344444334899999999999999999999999999999888 66777665


Q ss_pred             C
Q 022411           98 T   98 (297)
Q Consensus        98 ~   98 (297)
                      +
T Consensus       140 d  140 (261)
T KOG3010|consen  140 D  140 (261)
T ss_pred             C
Confidence            3

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.65  E-value=0.0001  Score=58.69  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++..|+++.+++.++++++.. ..++.++.+++.. ++....+||+|++....+.  ...++++++|.|||||+|++..
T Consensus        45 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        45 RVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcCCCCEEEEEe
Confidence            3455677888999888776544 4578888888764 3344468999998764332  3578999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.63  E-value=3.5e-05  Score=71.16  Aligned_cols=80  Identities=14%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc---CC----CeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC---DP----QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP   87 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~---~~----~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP   87 (297)
                      ++.|+..|+++.|++.|++.....   ..    ++++...+++.+-   ..||+|++.-+++|+. ++.++..+.+.|||
T Consensus       111 ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP  187 (282)
T KOG1270|consen  111 GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKP  187 (282)
T ss_pred             CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCC
Confidence            677888899999999999763221   22    3566677777663   4499999999999887 89999999999999


Q ss_pred             CcEEEEEecCC
Q 022411           88 GGTILIYKKLT   98 (297)
Q Consensus        88 GG~l~i~~~~~   98 (297)
                      ||+++|.+...
T Consensus       188 ~G~lfittinr  198 (282)
T KOG1270|consen  188 NGRLFITTINR  198 (282)
T ss_pred             CCceEeeehhh
Confidence            99999997653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.61  E-value=0.0003  Score=63.36  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC------CC-----------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE------LP-----------------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~------~~-----------------   73 (297)
                      .++..|+++.|++.++.++... ..++.++.+++.. ++++++||+|+++..++.      +.                 
T Consensus       113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~  191 (251)
T TIGR03534       113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED  191 (251)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence            3445677888999988776543 3468999999866 466789999999754321      11                 


Q ss_pred             ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                          ...++.++.++|+|||.+++.....        ..+.+...+..+||.++..
T Consensus       192 ~~~~~~~~i~~~~~~L~~gG~~~~~~~~~--------~~~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       192 GLDFYRRIIAQAPRLLKPGGWLLLEIGYD--------QGEAVRALFEAAGFADVET  239 (251)
T ss_pred             HHHHHHHHHHHHHHhcccCCEEEEEECcc--------HHHHHHHHHHhCCCCceEE
Confidence                0256889999999999998864321        1235667788899987654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.58  E-value=0.00025  Score=62.48  Aligned_cols=97  Identities=14%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|.++.|++.+++++...  ..++.++.+++..+ +.....||+|++....  .....++.++.++|||||++++..
T Consensus        68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377         68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS--EKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc--ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            445577888999998876554  35788888888653 3334689999986422  124678999999999999998744


Q ss_pred             cCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           96 KLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ...       .....+...|...|| +.+.
T Consensus       146 ~~~-------~~~~~~~~~l~~~g~-~~~~  167 (198)
T PRK00377        146 ILL-------ETVNNALSALENIGF-NLEI  167 (198)
T ss_pred             ecH-------HHHHHHHHHHHHcCC-CeEE
Confidence            321       123356667788999 4443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.57  E-value=0.00012  Score=64.98  Aligned_cols=73  Identities=12%  Similarity=0.204  Sum_probs=56.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++..|.+++|.+.|++++....  .++.++.+|+........+||+|++....++++     .++++.|+|||+|++..
T Consensus        99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944         99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh-----HHHHHhcCcCcEEEEEE
Confidence            34566788899999988765542  358999999987554567999999988766554     57889999999998754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.54  E-value=0.0003  Score=61.26  Aligned_cols=94  Identities=13%  Similarity=0.068  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   99 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   99 (297)
                      ..|.++.|++.++++++.. ..++.++.+++. .++ ..+||+|++....++  ...++.++++.|+|||++++..... 
T Consensus        60 ~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~lv~~~~~~-  134 (187)
T PRK08287         60 AIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGN--LTAIIDWSLAHLHPGGRLVLTFILL-  134 (187)
T ss_pred             EEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCccC--HHHHHHHHHHhcCCCeEEEEEEecH-
Confidence            4477788999988776543 346888888874 334 357999998754332  3568899999999999998865432 


Q ss_pred             CccchHHHHHHHHHHHHHCCcccccc
Q 022411          100 DKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus       100 ~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                            ....++...+..+||.+++.
T Consensus       135 ------~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287        135 ------ENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             ------hhHHHHHHHHHHCCCCcceE
Confidence                  12235667788899987654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.51  E-value=0.00015  Score=70.80  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .|+..|++++|++.|+++...  ..+.+..++...+   +++||.|++...++|+.   ...+++++.|+|||||++++.
T Consensus       192 ~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~  266 (383)
T PRK11705        192 SVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH  266 (383)
T ss_pred             EEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            445568899999999887643  3477788887765   47899999998888875   368999999999999999998


Q ss_pred             ecC
Q 022411           95 KKL   97 (297)
Q Consensus        95 ~~~   97 (297)
                      ...
T Consensus       267 ~i~  269 (383)
T PRK11705        267 TIG  269 (383)
T ss_pred             Ecc
Confidence            654

>PRK06202 hypothetical protein; Provisional

Probab=97.49  E-value=0.00016  Score=65.11  Aligned_cols=76  Identities=14%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|+++.|++.|+++..  ..++.+...+...+++++++||+|+++..+||++.   ..++++++|+++  |.+++.+
T Consensus        91 v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202         91 VTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             EEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            4456778899999877543  23567777777778888889999999999999983   469999999998  6666666


Q ss_pred             cCC
Q 022411           96 KLT   98 (297)
Q Consensus        96 ~~~   98 (297)
                      ...
T Consensus       167 l~~  169 (232)
T PRK06202        167 LIR  169 (232)
T ss_pred             ccc
Confidence            543

>PRK14967 putative methyltransferase; Provisional

Probab=97.49  E-value=0.00048  Score=61.83  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----------------------hH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD   75 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----------------------~~   75 (297)
                      .++..|+.+.|++.+++++.....++.++.+++... +++++||+|+++..++...                      ..
T Consensus        61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (223)
T PRK14967         61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLD  139 (223)
T ss_pred             eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHH
Confidence            455668888999988887655445688888888653 5678999999985433211                      13


Q ss_pred             HHHHHHHhcccCCcEEEEEecC
Q 022411           76 QLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        76 ~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      .++.+++++|||||++++....
T Consensus       140 ~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        140 RLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             HHHHHHHHhcCCCcEEEEEEec
Confidence            5778899999999999986544

>PRK14968 putative methyltransferase; Provisional

Probab=97.47  E-value=0.00046  Score=59.23  Aligned_cols=98  Identities=19%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC-CC--eEEEEccCCCCCCCCCcccEEEeccccCCC---------------------C-
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD-PQ--IITQASSLSQLPVESFSIDTVLSISSSHEL---------------------P-   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~-~~--v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~---------------------~-   73 (297)
                      ++..|+++.|.+.++++..... .+  +.++.+++.. ++.+..||+|+++..+...                     . 
T Consensus        48 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (188)
T PRK14968         48 VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREV  126 (188)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHH
Confidence            3444777888888877664432 22  7888888765 3456689999987543220                     0 


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ...+++++.++|||||.+++......   .    .+.+...+..+||....
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~~~~~---~----~~~l~~~~~~~g~~~~~  170 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQSSLT---G----EDEVLEYLEKLGFEAEV  170 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEcccC---C----HHHHHHHHHHCCCeeee
Confidence            24579999999999999987764321   1    12566678888997544

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.46  E-value=8.2e-05  Score=67.74  Aligned_cols=80  Identities=14%  Similarity=0.006  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS   99 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~   99 (297)
                      .-|.+-.|++.++.- +.-...+...++|-+.|+|.+++||+|++...+||+. .+..+.++..+|||.|.|+-.-.+..
T Consensus       100 ~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  100 MMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             eeecchHHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence            346666777776531 1112345677999999999999999999999999998 77889999999999999986655544


Q ss_pred             Cc
Q 022411          100 DK  101 (297)
Q Consensus       100 ~~  101 (297)
                      ++
T Consensus       179 TL  180 (325)
T KOG2940|consen  179 TL  180 (325)
T ss_pred             cH
Confidence            43

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.46  E-value=0.00017  Score=64.35  Aligned_cols=74  Identities=12%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|++++|+..|+++.....  .++.+..+++..++   .+||+|++...+++++   ...+++++++++++++.+.
T Consensus        79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021        79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            34456888999999988765433  47999999998876   7899999988877765   3678999999999877666


Q ss_pred             EE
Q 022411           93 IY   94 (297)
Q Consensus        93 i~   94 (297)
                      +.
T Consensus       156 ~~  157 (219)
T TIGR02021       156 FA  157 (219)
T ss_pred             EC
Confidence            53

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.45  E-value=0.00056  Score=64.67  Aligned_cols=88  Identities=22%  Similarity=0.334  Sum_probs=64.4

Q ss_pred             CeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC-CCCc-------cc---h-----
Q 022411           42 QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL-TSDK-------GD---V-----  104 (297)
Q Consensus        42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~-~~~~-------g~---~-----  104 (297)
                      .+.++--.++.||. .+.||+|++.-++.|.. +-..|.++...|+|||.|++.... ++..       +.   .     
T Consensus       166 ~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F  244 (315)
T PF08003_consen  166 PVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF  244 (315)
T ss_pred             cEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence            34444457888887 78999999988776665 888999999999999999977643 1110       00   0     


Q ss_pred             HHHHHHHHHHHHHCCcccccchhccc
Q 022411          105 DKAISALEGKLLLAGFLDAQRIQLKS  130 (297)
Q Consensus       105 ~~~~~~l~~~L~laGFv~v~~~~~kp  130 (297)
                      -.+...+...|..+||.++....+.+
T Consensus       245 iPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  245 IPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             eCCHHHHHHHHHHcCCceEEEecCcc
Confidence            02346888999999999998765443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.42  E-value=0.00021  Score=63.42  Aligned_cols=82  Identities=18%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             cCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEE
Q 022411           15 EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI   91 (297)
Q Consensus        15 ~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l   91 (297)
                      .|-.|+..|.++..++.+++.+++....|.....|+....++ ..||+|++..+++++++   +.++..+...++|||++
T Consensus        51 ~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~  129 (192)
T PF03848_consen   51 QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYN  129 (192)
T ss_dssp             TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEE
T ss_pred             CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEE
Confidence            466778778888777777665555666799999999988876 67999999888888872   57899999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++....
T Consensus       130 li~~~~  135 (192)
T PF03848_consen  130 LIVTFM  135 (192)
T ss_dssp             EEEEEB
T ss_pred             EEEEec
Confidence            886543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.41  E-value=0.00023  Score=63.44  Aligned_cols=72  Identities=18%  Similarity=0.112  Sum_probs=57.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|++++|++.|+++.    +++.+.++++.. |+++++||+|++..+++|++   ...++++++|++  ++.++|.+
T Consensus        70 v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587        70 IYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             EEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            445678889999887643    456788888887 88999999999999988876   367899999998  57888877


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      ..
T Consensus       143 ~~  144 (204)
T TIGR03587       143 YY  144 (204)
T ss_pred             ee
Confidence            54

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.39  E-value=0.00024  Score=63.19  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh----HHHHHHHHhcccCCcEEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~----~~~L~ei~RvLKPGG~l~i~   94 (297)
                      ++..|+++.-+++|+++... .++|.|+++++... .+.+.||+|+..-.++++.+    ..++..+...|+|||.|++.
T Consensus        68 LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g  145 (201)
T PF05401_consen   68 LLAVDISPRALARARERLAG-LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG  145 (201)
T ss_dssp             EEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            34558889999999988754 47899999999765 57899999999988888852    46889999999999999998


Q ss_pred             ecC
Q 022411           95 KKL   97 (297)
Q Consensus        95 ~~~   97 (297)
                      .+.
T Consensus       146 ~~r  148 (201)
T PF05401_consen  146 HAR  148 (201)
T ss_dssp             EE-
T ss_pred             Eec
Confidence            764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.37  E-value=0.00027  Score=65.92  Aligned_cols=91  Identities=19%  Similarity=0.280  Sum_probs=64.3

Q ss_pred             cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|.+||-+--             +..|+...++++..+.+++++...  ...+.+...|...++.   +||.|+++-.
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~  136 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM  136 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence            466788888743             445566678888889888877654  3468889999887753   9999999988


Q ss_pred             cCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.|+.   ...+++++.|.|||||++++....
T Consensus       137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             hhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            88875   378999999999999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.34  E-value=0.00072  Score=60.32  Aligned_cols=86  Identities=13%  Similarity=0.112  Sum_probs=61.9

Q ss_pred             ccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      +.|.+||-+-.|+.               |...|..+.|.+.|+++++.. ..++.++.+|+.........||+|++...
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence            45667777655422               445566788999998877654 45799999998766545578999998765


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..++     ...+.+.|+|||+|++..
T Consensus       156 ~~~~-----~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       156 GPKI-----PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cccc-----cHHHHHhcCcCcEEEEEE
Confidence            4443     356889999999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.30  E-value=0.00057  Score=61.44  Aligned_cols=81  Identities=12%  Similarity=0.051  Sum_probs=60.4

Q ss_pred             CCccChHHHHHHHHHHHHHHhhh-------------cCCCeEEEEccCCCCCCC-CCcccEEEeccccCCCCh---HHHH
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQ-------------CDPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLL   78 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~-------------~~~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~~---~~~L   78 (297)
                      |-.|+..|+++..++.+.+....             ...+|.++++|+..++.. ...||.|+-...++++++   ...+
T Consensus        56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~  135 (213)
T TIGR03840        56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYA  135 (213)
T ss_pred             CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHH
Confidence            55677789999888875432110             134689999999887643 357999998887888873   5689


Q ss_pred             HHHHhcccCCcEEEEEec
Q 022411           79 EEISRVLKPGGTILIYKK   96 (297)
Q Consensus        79 ~ei~RvLKPGG~l~i~~~   96 (297)
                      +.+.++|||||++++...
T Consensus       136 ~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       136 AHLLALLPPGARQLLITL  153 (213)
T ss_pred             HHHHHHcCCCCeEEEEEE
Confidence            999999999998766643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.30  E-value=0.00043  Score=67.66  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-------hHHHHHHHHhcccCCcE
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGT   90 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~   90 (297)
                      ..|+...|++.+.+++... ..++.++.+|+..+  ++++++||.|+.++...|..       ...++.+++|+|+|||.
T Consensus       151 GIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~  230 (390)
T PRK14121        151 GIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT  230 (390)
T ss_pred             EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence            4567778888887766543 46899999998654  57899999999988665542       15799999999999999


Q ss_pred             EEEEec
Q 022411           91 ILIYKK   96 (297)
Q Consensus        91 l~i~~~   96 (297)
                      +.+..-
T Consensus       231 l~l~TD  236 (390)
T PRK14121        231 LELRTD  236 (390)
T ss_pred             EEEEEE
Confidence            998764

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.29  E-value=0.00087  Score=59.94  Aligned_cols=95  Identities=17%  Similarity=0.069  Sum_probs=61.5

Q ss_pred             cccCceEEEeecCCccChHHHHHHHHHHHHH-Hhh----hcCCCeEEEEccCCCCC--------CCCCcccEEEeccccC
Q 022411            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDE-AVE----QCDPQIITQASSLSQLP--------VESFSIDTVLSISSSH   70 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~~-~~~----~~~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~~~   70 (297)
                      .+.|.+||-|--|+..-...+.+.+-....- .+.    ...+++.++++|+...+        +.+.+||+|++....+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~  128 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN  128 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence            4567788888666655333232221000000 000    01246889999998853        6788999999987655


Q ss_pred             CCC-h-----------HHHHHHHHhcccCCcEEEEEecCC
Q 022411           71 ELP-G-----------DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        71 ~~~-~-----------~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +.. +           ..++++++|+|||||.|++..+..
T Consensus       129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            542 1           358999999999999999987764

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.20  E-value=0.00055  Score=65.91  Aligned_cols=78  Identities=19%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccCCcEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l   91 (297)
                      .++..|+++.|++.|+++++.......+..+|+...  ..+.||+|+++..+|+..      ...++.++.+.|||||.|
T Consensus       222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L  299 (342)
T PRK09489        222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL  299 (342)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence            344557788899999887655444456666776542  357899999999888632      378899999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      +|....
T Consensus       300 ~iVan~  305 (342)
T PRK09489        300 RIVANA  305 (342)
T ss_pred             EEEEeC
Confidence            887653

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.09  E-value=0.0014  Score=59.95  Aligned_cols=83  Identities=22%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             eEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCCccchH--------------
Q 022411           43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVD--------------  105 (297)
Q Consensus        43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~--------------  105 (297)
                      +..+..+-..-|+..+++|+|+.++++.-+++   ..++..++++|||||.|++.+.+...+..+.              
T Consensus       128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR  207 (264)
T KOG2361|consen  128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR  207 (264)
T ss_pred             ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence            33333333344778899999999998877763   7899999999999999999987653221110              


Q ss_pred             --------HHHHHHHHHHHHCCcccccc
Q 022411          106 --------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus       106 --------~~~~~l~~~L~laGFv~v~~  125 (297)
                              -..+.+...+..+||..++.
T Consensus       208 gDGT~~YfF~~eeL~~~f~~agf~~~~~  235 (264)
T KOG2361|consen  208 GDGTRAYFFTEEELDELFTKAGFEEVQL  235 (264)
T ss_pred             cCCceeeeccHHHHHHHHHhcccchhcc
Confidence                    12356778899999987753

>TIGR03438 probable methyltransferase

Probab=97.07  E-value=0.00096  Score=62.87  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCC-CCCCCCc----ccEEEeccccCCCC---hHHHHHHHHhcc
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQ-LPVESFS----IDTVLSISSSHELP---GDQLLEEISRVL   85 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~-Lp~~d~s----fD~Vls~~~~~~~~---~~~~L~ei~RvL   85 (297)
                      +..++..|++++|++.+++++....  .++.++++|+.. +++....    ..+++....+++++   ...+|++++++|
T Consensus        88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L  167 (301)
T TIGR03438        88 PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL  167 (301)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhc
Confidence            3456677899999999988765544  356778999875 4555443    22344445677776   356899999999


Q ss_pred             cCCcEEEEEecC
Q 022411           86 KPGGTILIYKKL   97 (297)
Q Consensus        86 KPGG~l~i~~~~   97 (297)
                      +|||.|+|....
T Consensus       168 ~pgG~~lig~d~  179 (301)
T TIGR03438       168 GPGGGLLIGVDL  179 (301)
T ss_pred             CCCCEEEEeccC
Confidence            999999976543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.05  E-value=0.0033  Score=57.57  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             cChHHHHHHHHHHHHHHhh-hcCCCeEEEEccCCCCCCCCCcccEEEeccccCC------C-------------------
Q 022411           19 LPVSAVLNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------L-------------------   72 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~-~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~------~-------------------   72 (297)
                      ++..|+++.+++.++++.. ....++.++.+++.. ++.+++||+|+++..+..      +                   
T Consensus       135 v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g  213 (275)
T PRK09328        135 VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG  213 (275)
T ss_pred             EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence            3455778888999888765 334579999998854 334679999999743210      0                   


Q ss_pred             -C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           73 -P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        73 -~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                       . ...++.++.++|+|||.+++.....        ..+.+...+..+||.++..
T Consensus       214 ~~~~~~~~~~~~~~Lk~gG~l~~e~g~~--------~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        214 LDFYRRIIEQAPRYLKPGGWLLLEIGYD--------QGEAVRALLAAAGFADVET  260 (275)
T ss_pred             HHHHHHHHHHHHHhcccCCEEEEEECch--------HHHHHHHHHHhCCCceeEE
Confidence             0 1456778889999999999843211        1125666777899987654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.04  E-value=0.0029  Score=57.50  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccC-CCCCCCCCcccEEEeccccCCC---------C---hHHHHHHHHhcccC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHEL---------P---GDQLLEEISRVLKP   87 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~-~~Lp~~d~sfD~Vls~~~~~~~---------~---~~~~L~ei~RvLKP   87 (297)
                      .-|++..|+++|.++.  ..  -.++.+|+ +-+||..++||.++++.+++|+         |   ...++..++.+|++
T Consensus        77 GvDiSpsML~~a~~~e--~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r  152 (270)
T KOG1541|consen   77 GVDISPSMLEQAVERE--LE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR  152 (270)
T ss_pred             eecCCHHHHHHHHHhh--hh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence            3488999999998632  11  23444444 7899999999999999876663         1   13568889999999


Q ss_pred             CcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      |++.+++-....     ....+-+....+.+||--
T Consensus       153 g~raV~QfYpen-----~~q~d~i~~~a~~aGF~G  182 (270)
T KOG1541|consen  153 GARAVLQFYPEN-----EAQIDMIMQQAMKAGFGG  182 (270)
T ss_pred             CceeEEEecccc-----hHHHHHHHHHHHhhccCC
Confidence            999998865432     223446677889999974

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.04  E-value=0.0012  Score=58.78  Aligned_cols=83  Identities=12%  Similarity=0.101  Sum_probs=58.1

Q ss_pred             CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+||-|--|+.            ++..|+++.|++.|+++.....  .++.+..+++   +..+++||+|++...++|+
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~~  140 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLIHY  140 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhhcC
Confidence            456777755443            3345667899999988764432  4788998884   3446889999999888776


Q ss_pred             C---hHHHHHHHHhcccCCcEEE
Q 022411           73 P---GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        73 ~---~~~~L~ei~RvLKPGG~l~   92 (297)
                      +   ...+++++.+.+++++.+.
T Consensus       141 ~~~~~~~~l~~l~~~~~~~~~i~  163 (230)
T PRK07580        141 PQEDAARMLAHLASLTRGSLIFT  163 (230)
T ss_pred             CHHHHHHHHHHHHhhcCCeEEEE
Confidence            6   3567888888776555443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.03  E-value=0.0011  Score=64.63  Aligned_cols=78  Identities=17%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC----CCeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKP   87 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~----~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKP   87 (297)
                      .++..|.++.|++.|+++++...    .++.+..+++... ++..+||+|+++..+|...      ...++.+++|+|+|
T Consensus       254 ~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp  332 (378)
T PRK15001        254 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI  332 (378)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence            45566888899999988765432    3678888877532 3456899999998777542      25788999999999


Q ss_pred             CcEEEEEec
Q 022411           88 GGTILIYKK   96 (297)
Q Consensus        88 GG~l~i~~~   96 (297)
                      ||.|++...
T Consensus       333 GG~L~iV~n  341 (378)
T PRK15001        333 NGELYIVAN  341 (378)
T ss_pred             CCEEEEEEe
Confidence            999998853

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.99  E-value=0.002  Score=47.74  Aligned_cols=77  Identities=22%  Similarity=0.319  Sum_probs=56.4

Q ss_pred             ccChHHHHHHHHHHHHHHh-hhcCCCeEEEEccCCCCCC-CCCcccEEEeccccCC-CC-hHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~-~~~~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~-~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .+...|+.+.+...+++.. .....++.+..++...... ....||+|++...+++ .. ....+..+.+.|+|||.+++
T Consensus        23 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~  102 (107)
T cd02440          23 RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL  102 (107)
T ss_pred             EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence            3345556666666665322 2235678888888877653 5678999999988776 44 68899999999999999987


Q ss_pred             E
Q 022411           94 Y   94 (297)
Q Consensus        94 ~   94 (297)
                      .
T Consensus       103 ~  103 (107)
T cd02440         103 T  103 (107)
T ss_pred             E
Confidence            5

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.95  E-value=0.0026  Score=58.20  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCC--CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~--~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +...|+++.|++.|+++......  .+.+        +..+.+||+|+++...+.  ...++.++.++|||||++++...
T Consensus       145 v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~~~~~~fD~Vvani~~~~--~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        145 VLAVDIDPQAVEAARENAELNGVELNVYL--------PQGDLKADVIVANILANP--LLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCceEEE--------ccCCCCcCEEEEcCcHHH--HHHHHHHHHHhcCCCcEEEEEEC
Confidence            44668888999999887654322  2222        222237999998753221  35688999999999999998865


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ..       .....+...+...||..+..
T Consensus       215 ~~-------~~~~~v~~~l~~~Gf~~~~~  236 (250)
T PRK00517        215 LE-------EQADEVLEAYEEAGFTLDEV  236 (250)
T ss_pred             cH-------hhHHHHHHHHHHCCCEEEEE
Confidence            42       12336677888899986653

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.90  E-value=0.00094  Score=52.94  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=58.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHh
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISR   83 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~R   83 (297)
                      ..+...|+.+...+.++.+....  ..++.++++|+..++  +++++||+|+++..+....         ...++.++.+
T Consensus        24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~  103 (117)
T PF13659_consen   24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR  103 (117)
T ss_dssp             CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred             CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence            33445566677788888766543  457999999998775  7899999999987654321         2578999999


Q ss_pred             cccCCcEEEEEec
Q 022411           84 VLKPGGTILIYKK   96 (297)
Q Consensus        84 vLKPGG~l~i~~~   96 (297)
                      .|||||.+++..+
T Consensus       104 ~L~~gG~~~~~~~  116 (117)
T PF13659_consen  104 LLKPGGVLVFITP  116 (117)
T ss_dssp             HEEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEeC
Confidence            9999999988654

...

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.89  E-value=0.004  Score=55.24  Aligned_cols=87  Identities=13%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             ccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-+-.|+...            ..|..+.|++.++++.+.. ..++.++.+++.....+.+.||+|++....++
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~  156 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE  156 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh
Confidence            3466788876655432            2344577888888776554 44689999987654334578999999875554


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +     ..++++.|+|||++++...
T Consensus       157 ~-----~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        157 I-----PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             h-----hHHHHHhcCCCcEEEEEEc
Confidence            3     3567899999999987654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.88  E-value=0.0018  Score=55.81  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=56.3

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCC-CeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccCCcEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~-~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l   91 (297)
                      ++..|..+.+++.++++++.... ++.+..+|+.. ++++..||+|+++..++.-.      ...++.+..+.|||||.|
T Consensus        58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l  136 (170)
T PF05175_consen   58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL  136 (170)
T ss_dssp             EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence            44557788888988887765433 38888888754 23478999999998766443      367899999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++....
T Consensus       137 ~lv~~~  142 (170)
T PF05175_consen  137 FLVINS  142 (170)
T ss_dssp             EEEEET
T ss_pred             EEEeec
Confidence            766543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=96.87  E-value=0.0065  Score=59.08  Aligned_cols=115  Identities=14%  Similarity=0.151  Sum_probs=74.1

Q ss_pred             cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHH--h---h---hcCCCeEEEEccCCC-CCCCCCcccE
Q 022411            6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEA--V---E---QCDPQIITQASSLSQ-LPVESFSIDT   62 (297)
Q Consensus         6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~--~---~---~~~~~v~~~~~d~~~-Lp~~d~sfD~   62 (297)
                      +-.+||++--|...              +..++.++|++.|++.  .   .   ..++++.++.+|+.. ++-..+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            34467777655333              2336777899998851  1   1   126789999998875 4444678999


Q ss_pred             EEeccccC------CCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           63 VLSISSSH------ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        63 Vls~~~~~------~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      |++...-.      .+....+++.+.+.|+|||.|++......   ........+.+.+..+||...
T Consensus       230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~---~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA---DAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh---hhHHHHHHHHHHHHHhCCceE
Confidence            99875321      11246789999999999999987743221   111222346677888888654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.83  E-value=0.0026  Score=57.44  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=62.9

Q ss_pred             CceEEEeec------------CCccChHHHHHHHHHHHHHH--hh-----------hcCCCeEEEEccCCCCCCC-CCcc
Q 022411            7 QSAVLALSE------------DKILPVSAVLNAIRDLGDEA--VE-----------QCDPQIITQASSLSQLPVE-SFSI   60 (297)
Q Consensus         7 ~~~VLll~~------------~~~vt~~dlse~m~~~A~~~--~~-----------~~~~~v~~~~~d~~~Lp~~-d~sf   60 (297)
                      +.+||.+--            |..|+..|+++..++.+...  ..           ....+|.+.++|+..++.. ...|
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f  117 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV  117 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence            456776643            55666778888777765321  11           0135789999999888543 2589


Q ss_pred             cEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411           61 DTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        61 D~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~   94 (297)
                      |.|+-...++++++   ...++.+.++|+|||++++.
T Consensus       118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            99998888888872   68899999999999975543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.78  E-value=0.007  Score=56.65  Aligned_cols=95  Identities=15%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC-------------CCC---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP---------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~-------------~~~---------   73 (297)
                      .++..|+++.+++.|++++...  ..++.++.+|+.. +++..+||+|+++-...             +-+         
T Consensus       147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d  225 (284)
T TIGR03533       147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED  225 (284)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc
Confidence            3456678899999999887654  2468999999743 23466899999973211             111         


Q ss_pred             ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                          ...++.++.+.|+|||++++.....      .   ..+...+..+||.-
T Consensus       226 Gl~~~~~il~~a~~~L~~gG~l~~e~g~~------~---~~v~~~~~~~~~~~  269 (284)
T TIGR03533       226 GLDLVRRILAEAADHLNENGVLVVEVGNS------M---EALEEAYPDVPFTW  269 (284)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHHhCCCce
Confidence                1456888899999999998654321      1   24556666678764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.77  E-value=0.0072  Score=59.72  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCC-CCcccEEEeccccCCC----------------------C-
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHEL----------------------P-   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~----------------------~-   73 (297)
                      .++..|++++|++.|+++++....++.++.+|+....++ ..+||+|+++......                      . 
T Consensus       277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG  356 (423)
T PRK14966        277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG  356 (423)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence            344568889999999988766555899999998654332 4579999997642110                      0 


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                         ...++.++.+.|+|||.+++.....        ..+.+...+...||..++.
T Consensus       357 L~~yr~Ii~~a~~~LkpgG~lilEiG~~--------Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        357 LSCIRTLAQGAPDRLAEGGFLLLEHGFD--------QGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEECcc--------HHHHHHHHHHHCCCcEEEE
Confidence               1256667778999999987543221        1125666777789976543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.71  E-value=0.0021  Score=60.57  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             CCeEEEEccCCCCCCC-CCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411           41 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      ..|.|...++...+++ .+.||+|++.+++.++.   ...++..+++.|+|||.|++-
T Consensus       204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4678888898875544 67899999999888886   478999999999999998764

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.0086  Score=55.27  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=71.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CC-CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DP-QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~-~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .|+.-+.-++..+.|++|.+.. .. ++.+..+|+.+.-+++ .||+|+.-..-    +..++..+..+|||||.+.+..
T Consensus       121 ~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LDmp~----PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLDLPD----PWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEcCCC----hHHHHHHHHHHhCCCcEEEEEc
Confidence            3344466778889999887653 33 4888899998776665 89999875421    5689999999999999999988


Q ss_pred             cCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           96 KLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      +.-   ....    .....|...||++++.++
T Consensus       196 P~v---eQv~----kt~~~l~~~g~~~ie~~E  220 (256)
T COG2519         196 PTV---EQVE----KTVEALRERGFVDIEAVE  220 (256)
T ss_pred             CCH---HHHH----HHHHHHHhcCccchhhhe
Confidence            753   2222    333456667999988765

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.66  E-value=0.0049  Score=58.92  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=62.9

Q ss_pred             cccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         4 ~~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      ++.+.+||.+-.|+.               |...|.+++|++.|++++... ..++.++.+|+...+.....||+|++..
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~  157 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV  157 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence            345678888866543               334467789999998876543 3568999999877665667899999876


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ....+     ...+.+.|+|||++++..
T Consensus       158 g~~~i-----p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        158 GVDEV-----PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             chHHh-----HHHHHHhcCCCCEEEEEe
Confidence            54432     345788999999998754

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.66  E-value=0.0055  Score=58.41  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG   88 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPG   88 (297)
                      .|+..|+++.|++.|+++....      ..++.|..+|++.+   +++||+|++...++|++.   ..+++.+.+ +.+|
T Consensus       168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g  243 (315)
T PLN02585        168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK  243 (315)
T ss_pred             EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC
Confidence            4556688999999999876543      34678888888755   478999999988877763   234555554 4555


Q ss_pred             cEEE
Q 022411           89 GTIL   92 (297)
Q Consensus        89 G~l~   92 (297)
                      |.++
T Consensus       244 ~liI  247 (315)
T PLN02585        244 RLII  247 (315)
T ss_pred             EEEE
Confidence            5544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.59  E-value=0.014  Score=53.77  Aligned_cols=104  Identities=13%  Similarity=0.207  Sum_probs=73.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCC--CCCCcccEEEecccc-----------------CCCC--
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLP--VESFSIDTVLSISSS-----------------HELP--   73 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~-----------------~~~~--   73 (297)
                      +.+...++.++|.+.|+++++.  ...+|+++++|+.++.  ..-.+||+|+++-.+                 |...  
T Consensus        69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~  148 (248)
T COG4123          69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD  148 (248)
T ss_pred             CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC
Confidence            3344557788999999987755  3678999999998663  445579999998521                 1111  


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchhc
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL  128 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~  128 (297)
                      .+.+++-..++|||||++.+.-..        ....++...+...+|.-.....+
T Consensus       149 le~~i~~a~~~lk~~G~l~~V~r~--------erl~ei~~~l~~~~~~~k~i~~V  195 (248)
T COG4123         149 LEDLIRAAAKLLKPGGRLAFVHRP--------ERLAEIIELLKSYNLEPKRIQFV  195 (248)
T ss_pred             HHHHHHHHHHHccCCCEEEEEecH--------HHHHHHHHHHHhcCCCceEEEEe
Confidence            478889999999999999877542        23335666777778776544443

>PRK00811 spermidine synthase; Provisional

Probab=96.57  E-value=0.007  Score=56.64  Aligned_cols=90  Identities=14%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhh------cCCCeEEEEccCCCC-CCCCCcccEEE
Q 022411            6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQ------CDPQIITQASSLSQL-PVESFSIDTVL   64 (297)
Q Consensus         6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~------~~~~v~~~~~d~~~L-p~~d~sfD~Vl   64 (297)
                      +..+||.+-.|...              +..++.++|++.|++....      .++++.++.+|+... ....+.||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            34567777554332              3445677888888875432      257899999998643 33467899999


Q ss_pred             eccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411           65 SISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        65 s~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      +.....+.+     ...+++.+.+.|+|||.+++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            876433322     3678899999999999998753

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.56  E-value=0.0014  Score=59.12  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .|.+.+.++..++.|++..... .....+.+..++..-.+...||+|++.+.+.|+.   .-.+|+.....|+|+|.++|
T Consensus        80 ~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen   80 EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence            3445567778888887655443 3335566778887755567999999999988887   35788999999999999999


Q ss_pred             EecCCCCcc--------chHHHHHHHHHHHHHCCcccccc
Q 022411           94 YKKLTSDKG--------DVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        94 ~~~~~~~~g--------~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      .+.......        .+..+.+.+.+.+..||+.-+..
T Consensus       160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence            986533211        11223457888899999987654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.55  E-value=0.005  Score=57.63  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             ccCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.|.+||-+-.|+.             +...|+.+.|++.|++++...  ...+.+..++..  ++.++.||+|+++...
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~  235 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA  235 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence            44566776655443             334577788899888876543  234555555533  3446799999997643


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.  ...++.++.++|||||+|++....
T Consensus       236 ~~--l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       236 EV--IKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HH--HHHHHHHHHHHcCCCcEEEEEeCc
Confidence            22  357899999999999999987654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.52  E-value=0.0084  Score=53.87  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             cccCceEEEeecCCccC---hH------------HHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---~~------------dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      ++.|.+||-+-.|+.-.   +.            +..+.+.+.|+++.+.. ..++.++.+|....--....||.|++..
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~  149 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA  149 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence            46788999997764332   22            22367888888877654 4589999999865433567899999988


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ....+|     ..+.+.||+||+|++-..
T Consensus       150 a~~~ip-----~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  150 AVPEIP-----EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             BBSS-------HHHHHTEEEEEEEEEEES
T ss_pred             ccchHH-----HHHHHhcCCCcEEEEEEc
Confidence            766544     457788999999997543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.50  E-value=0.0036  Score=55.74  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411           41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .+|.|...++.+.+...+.||+|++.+++.++.   ...++..+++.|+|||.|++-.
T Consensus       118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            368899988888555678899999999999998   3789999999999999999753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK03612 spermidine synthase; Provisional

Probab=96.47  E-value=0.017  Score=58.65  Aligned_cols=116  Identities=18%  Similarity=0.215  Sum_probs=75.5

Q ss_pred             ccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHH--hhh------cCCCeEEEEccCCC-CCCCCCccc
Q 022411            5 KMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEA--VEQ------CDPQIITQASSLSQ-LPVESFSID   61 (297)
Q Consensus         5 ~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~--~~~------~~~~v~~~~~d~~~-Lp~~d~sfD   61 (297)
                      ++..+||.+-.|.-.              +..|+.++|++.++++  ...      .+++++++.+|+.. +...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            345567777554433              3445667888888872  111      24789999998865 233357899


Q ss_pred             EEEeccccCCCC------hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           62 TVLSISSSHELP------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        62 ~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      +|++.....+.+      ..++++.+.+.|||||.+++......  .. ......+.+.+...|| .+.
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~-~~~~~~i~~~l~~~gf-~v~  440 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FA-PKAFWSIEATLEAAGL-ATT  440 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc--cc-hHHHHHHHHHHHHcCC-EEE
Confidence            999986543322      35689999999999999987643221  11 2233467778888999 443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.47  E-value=0.01  Score=55.43  Aligned_cols=98  Identities=19%  Similarity=0.197  Sum_probs=63.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEecccc-------------CCCC----------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP----------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-------------~~~~----------   73 (297)
                      ++..|+++.+++.|++++....  .++.++.+|+.. +++...||+|+++..+             +|-|          
T Consensus       141 v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dg  219 (284)
T TIGR00536       141 VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDG  219 (284)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcH
Confidence            4455778889999998775442  349999998865 3445589999997321             1111          


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH-HCCcccccc
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQR  125 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~-laGFv~v~~  125 (297)
                         ...++.++.+.|+|||.+++......     ..   .+...+. ..||.+++.
T Consensus       220 l~~~~~ii~~a~~~L~~gG~l~~e~g~~q-----~~---~~~~~~~~~~~~~~~~~  267 (284)
T TIGR00536       220 LNILRQIIELAPDYLKPNGFLVCEIGNWQ-----QK---SLKELLRIKFTWYDVEN  267 (284)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEECccH-----HH---HHHHHHHhcCCCceeEE
Confidence               13578889999999999986543210     11   3344444 368876654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.46  E-value=0.0055  Score=59.54  Aligned_cols=55  Identities=25%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             eEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           43 IITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..++.+++-+.|+++++||.+.+.-+.+|.+ ...+++|++|+|||||.+...++.
T Consensus       162 ~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  162 CNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             cceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            3348889999999999999999999999998 899999999999999999988764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.45  E-value=0.0076  Score=59.55  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC--CCCCcccEEEeccc------------cCCCC-h---------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS------------SHELP-G---------   74 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~------------~~~~~-~---------   74 (297)
                      ++..|.++.|++.++++++....++.++.+|+..++  ++.++||.|++...            ..|.. .         
T Consensus       271 v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~  350 (427)
T PRK10901        271 VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAAL  350 (427)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHH
Confidence            445577788999998887665556788899988764  34678999996432            11211 1         


Q ss_pred             -HHHHHHHHhcccCCcEEEEEecC
Q 022411           75 -DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        75 -~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       ..++.++++.|||||+|++.+-.
T Consensus       351 q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        351 QSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCC
Confidence             36899999999999999987743

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.43  E-value=0.0049  Score=57.87  Aligned_cols=92  Identities=12%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      .+-|.+||-+--             +..|+..++++++.+.+++++...  ..+++++..|...+.   +.||.|+|.-.
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgm  146 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGM  146 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhh
Confidence            345667776622             455667788999999999877654  347888888887664   44999999988


Q ss_pred             cCCCC---hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           69 SHELP---GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++|+-   -...++.+.++|+|||++++.....
T Consensus       147 fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         147 FEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             HHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            88775   4789999999999999999887553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.39  E-value=0.0029  Score=55.36  Aligned_cols=61  Identities=15%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC-C-CCCCCcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP   87 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~-L-p~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP   87 (297)
                      ..|++++|++.++.      .++.++.+++.. + ++++++||+|+++.++||++ +..+++++.|++++
T Consensus        41 giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        41 GIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            34566677766643      246778888865 5 47788999999999999998 78899999998775

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.35  E-value=0.023  Score=51.28  Aligned_cols=55  Identities=22%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCC--cEEEEEecC
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPG--GTILIYKKL   97 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPG--G~l~i~~~~   97 (297)
                      ..+|.++.+|+. -|+|.  +|+|+....+|.++   ...+|+++++.|+||  |+|+|.+..
T Consensus       142 ~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  142 ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            568999999996 45555  99999999999887   367999999999999  999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.35  E-value=0.016  Score=50.48  Aligned_cols=94  Identities=16%  Similarity=0.076  Sum_probs=55.5

Q ss_pred             cccCceEEEeecCCccChHHHHHHHHHHHH----HHhhh-cCCCeEEEEccCCCCC--------CCCCcccEEEecccc-
Q 022411            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGD----EAVEQ-CDPQIITQASSLSQLP--------VESFSIDTVLSISSS-   69 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~----~~~~~-~~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~~-   69 (297)
                      ++.|.+||-+-.|+..-...+...+...++    ..... ...++.+..+++.+.+        ++.++||+|++.... 
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~  109 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN  109 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence            456788999877665422222221111000    00000 1236777888876543        457789999986432 


Q ss_pred             ---CC-CC-------hHHHHHHHHhcccCCcEEEEEecC
Q 022411           70 ---HE-LP-------GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        70 ---~~-~~-------~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         +| +.       ...++.+++++|+|||++++..+.
T Consensus       110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence               12 11       157899999999999999986544

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.31  E-value=0.0032  Score=58.93  Aligned_cols=71  Identities=28%  Similarity=0.383  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           23 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        23 dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      |+....+..++..    +. .....+|+.++|+.+.+||.+++..+.||+.    ...+++|+.|+|+|||...|+.+..
T Consensus        72 D~c~~l~~~ak~~----~~-~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen   72 DLCTGLLGGAKRS----GG-DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             chhhhhccccccC----CC-ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            5555555544321    11 1567889999999999999999999999986    3789999999999999999888753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.30  E-value=0.0092  Score=59.08  Aligned_cols=79  Identities=22%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC----CCCCcccEEEeccc------cCCCC--------------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP----VESFSIDTVLSISS------SHELP--------------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp----~~d~sfD~Vls~~~------~~~~~--------------   73 (297)
                      ++..|+.+.|++.++++++.. ..++.++.+|+..++    +..++||.|++...      ++..+              
T Consensus       280 v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l  359 (434)
T PRK14901        280 IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQEL  359 (434)
T ss_pred             EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHH
Confidence            334577889999998887655 346899999998776    45678999997421      11111              


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         ...+|.++++.|||||+|++.+-.
T Consensus       360 ~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        360 APLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence               146799999999999999877643

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.28  E-value=0.0065  Score=53.27  Aligned_cols=77  Identities=16%  Similarity=0.144  Sum_probs=53.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++..|.++.|++.++++++.. ..+++++.+++.. ++.-...+|.|+....   .....++.+++++|+|||++++..
T Consensus        66 ~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402         66 RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence            3444577788999998876543 3578899888754 3322234677655321   124688999999999999999887


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      ..
T Consensus       143 ~~  144 (196)
T PRK07402        143 SS  144 (196)
T ss_pred             ec
Confidence            54

>PHA03411 putative methyltransferase; Provisional

Probab=96.27  E-value=0.01  Score=55.61  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---------------------hHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---------------------GDQ   76 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---------------------~~~   76 (297)
                      .++..|+++.|++.++++    .+++.++.+|+..+.. ..+||+|+++..+++.+                     ...
T Consensus        90 ~V~gVDisp~al~~Ar~n----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~  164 (279)
T PHA03411         90 KIVCVELNPEFARIGKRL----LPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQ  164 (279)
T ss_pred             EEEEEECCHHHHHHHHHh----CcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHH
Confidence            444557778888888764    2478899999987753 46899999987666533                     134


Q ss_pred             HHHHHHhcccCCcEEEEEecCCCC-ccchHHHHHHHHHHHHHCCcccc
Q 022411           77 LLEEISRVLKPGGTILIYKKLTSD-KGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        77 ~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      .+....+.|+|+|.+++.-....- .+.+  ...++++.|..+||+--
T Consensus       165 ~l~~v~~~L~p~G~~~~~yss~~~y~~sl--~~~~y~~~l~~~g~~~~  210 (279)
T PHA03411        165 KFADVGYFIVPTGSAGFAYSGRPYYDGTM--KSNKYLKWSKQTGLVTY  210 (279)
T ss_pred             HHhhhHheecCCceEEEEEeccccccccC--CHHHHHHHHHhcCcEec
Confidence            567778999999988766332111 1111  13478889999999853

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.20  E-value=0.01  Score=56.34  Aligned_cols=96  Identities=14%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEecccc-------------CCCC---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP---------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-------------~~~~---------   73 (297)
                      .++..|+++.+++.|++++....  .++.++.+|+.. ++++.+||+|+++-.+             ++.|         
T Consensus       159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d  237 (307)
T PRK11805        159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD  237 (307)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence            45566888999999998876542  469999999753 2345689999997321             1111         


Q ss_pred             ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                          ...+++++.+.|+|||++++.....      .   ..+...+...||+-.
T Consensus       238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g~~------~---~~~~~~~~~~~~~~~  282 (307)
T PRK11805        238 GLDLVRRILAEAPDYLTEDGVLVVEVGNS------R---VHLEEAYPDVPFTWL  282 (307)
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHhhCCCEEE
Confidence                1467888999999999998753321      1   134445555676543

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.14  E-value=0.0014  Score=56.32  Aligned_cols=55  Identities=24%  Similarity=0.306  Sum_probs=43.4

Q ss_pred             eEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           43 IITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +..+.-.....+|.++|.|+|++-.++.|+.   ...++++.+|+|||||+|.|..+.
T Consensus        31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd   88 (185)
T COG4627          31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD   88 (185)
T ss_pred             cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence            4444434445689999999999987776665   468899999999999999998664

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.06  E-value=0.011  Score=54.60  Aligned_cols=80  Identities=11%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc---c-----------CCCC---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS---S-----------HELP---------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~---~-----------~~~~---------   73 (297)
                      .+..-|+++.+++.++++++.. ..++.+..+|+..++.....||+|++...   .           .+.+         
T Consensus        98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~  177 (264)
T TIGR00446        98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISAL  177 (264)
T ss_pred             EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHH
Confidence            3445678888999888877654 34688889998877666667999997431   1           0110         


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...+|.++.+.|||||+|+...-.
T Consensus       178 q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       178 QKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCC
Confidence            135889999999999999877543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.06  E-value=0.012  Score=58.43  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCC-CCCCcccEEEeccc---cCCCC-------------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLP-VESFSIDTVLSISS---SHELP-------------------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~---~~~~~-------------------   73 (297)
                      .++.-|+++.+++.++++++... .++.+..+|+..++ +..++||.|++...   +..+.                   
T Consensus       264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~  343 (431)
T PRK14903        264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE  343 (431)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHH
Confidence            34456888999999988876653 45889999988776 55678999997421   11111                   


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       ...+|.++++.|||||++++.+-.
T Consensus       344 ~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        344 IQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEECC
Confidence             145688999999999999887654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.026  Score=50.83  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             ccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.|++||=+-.|+-=.            ..+..+++.+.|+++.+.. +.||.++++|...-=-+...||.|+...+...
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~  150 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPE  150 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCC
Confidence            4567888886653222            2244457778888887766 55799999999754224578999999887776


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +|     ..+.+-|||||++++-..
T Consensus       151 vP-----~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         151 VP-----EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CC-----HHHHHhcccCCEEEEEEc
Confidence            66     346778999999997664

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.04  E-value=0.015  Score=57.41  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCe--EEEEccCCCCCC--CCCcccEEEecc-----c-cCCCC--------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQI--ITQASSLSQLPV--ESFSIDTVLSIS-----S-SHELP--------------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v--~~~~~d~~~Lp~--~d~sfD~Vls~~-----~-~~~~~--------------   73 (297)
                      .+...|.++.|++.++++++.....+  .+..++...+++  +.++||.|++..     . ++..+              
T Consensus       264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l  343 (426)
T TIGR00563       264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAEL  343 (426)
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHH
Confidence            34455778899999888876654333  335666665544  567899999642     1 22111              


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         ...+|.+++++|||||+|++.+-.
T Consensus       344 ~~lQ~~lL~~a~~~LkpgG~lvystcs  370 (426)
T TIGR00563       344 AELQSEILDAIWPLLKTGGTLVYATCS  370 (426)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence               146899999999999999988754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04457 spermidine synthase; Provisional

Probab=95.92  E-value=0.018  Score=53.35  Aligned_cols=78  Identities=10%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             ChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCC-CCCCCcccEEEeccc-cCC----CChHHHHHHHHhcccCCcEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQL-PVESFSIDTVLSISS-SHE----LPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~-~~~----~~~~~~L~ei~RvLKPGG~l   91 (297)
                      +..|+.++|++.|++....  ...++.++.+|+... .-...+||+|+.... ...    +....+++++.+.|+|||++
T Consensus        94 ~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvl  173 (262)
T PRK04457         94 TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIF  173 (262)
T ss_pred             EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEE
Confidence            3446668899998876432  246899999987532 222468999997531 111    12378999999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++..+.
T Consensus       174 vin~~~  179 (262)
T PRK04457        174 VVNLWS  179 (262)
T ss_pred             EEEcCC
Confidence            986554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.91  E-value=0.012  Score=53.50  Aligned_cols=83  Identities=11%  Similarity=-0.076  Sum_probs=62.6

Q ss_pred             cCCccChHHHHHHHHHHHHHHh-------------hhcCCCeEEEEccCCCCCCC---CCcccEEEeccccCCCCh---H
Q 022411           15 EDKILPVSAVLNAIRDLGDEAV-------------EQCDPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPG---D   75 (297)
Q Consensus        15 ~~~~vt~~dlse~m~~~A~~~~-------------~~~~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~~---~   75 (297)
                      .|..|+..|+++.-++.+.+..             ......|.++++|+-.++..   -+.||+|+-...++.+++   .
T Consensus        64 ~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~  143 (226)
T PRK13256         64 KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRT  143 (226)
T ss_pred             CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHH
Confidence            4666777788887777764411             01245799999999988642   257999998888888883   6


Q ss_pred             HHHHHHHhcccCCcEEEEEecC
Q 022411           76 QLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        76 ~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...+.+.++|+|||.+++....
T Consensus       144 ~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        144 NYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             HHHHHHHHHhCCCcEEEEEEEe
Confidence            8899999999999999877653

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.88  E-value=0.019  Score=57.06  Aligned_cols=79  Identities=14%  Similarity=0.078  Sum_probs=58.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEecc---c---------cCCCC-----------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSIS---S---------SHELP-----------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~---~---------~~~~~-----------   73 (297)
                      .++..|+++.|++.++++++... .++.++.+|+..++ ++++||+|+.-.   .         ..|..           
T Consensus       277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~  355 (445)
T PRK14904        277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGL  355 (445)
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHH
Confidence            35566888999999988776543 46899999998775 567899999631   1         01111           


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...+|.++++.|||||+|++.+-.
T Consensus       356 q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        356 QAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEeCC
Confidence            125899999999999999988754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.81  E-value=0.02  Score=56.84  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=54.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccC------------CCC----------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSH------------ELP----------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~------------~~~----------   73 (297)
                      ++..|+.+.+++.++++++.. ..++.++.+|+..++  ++ ++||+|++.....            |..          
T Consensus       278 v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~  356 (444)
T PRK14902        278 VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQE  356 (444)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHH
Confidence            334566788888888877654 346899999987763  33 7899999754210            100          


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEec
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                       ...++.++.++|||||+|++.+-
T Consensus       357 ~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        357 IQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEcC
Confidence             13578999999999999987653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.68  E-value=0.061  Score=49.64  Aligned_cols=94  Identities=16%  Similarity=0.247  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCC---CCcccEEEeccccCCCChHHHHHHHHhcc-cCCcEEEEEec
Q 022411           23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVL-KPGGTILIYKK   96 (297)
Q Consensus        23 dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~~~~~L~ei~RvL-KPGG~l~i~~~   96 (297)
                      ++.++..+.|+++.+..  ..++.+...|+..-.|+   +..||.|+.-..-    +..++..+.++| ||||++.+..+
T Consensus        72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fsP  147 (247)
T PF08704_consen   72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFSP  147 (247)
T ss_dssp             ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECC
Confidence            44567778888776553  45799999998654443   3679999886533    456789999999 99999998876


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .-      .+ .......|...||.+++..+
T Consensus       148 ~i------eQ-v~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  148 CI------EQ-VQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             SH------HH-HHHHHHHHHHTTEEEEEEEE
T ss_pred             CH------HH-HHHHHHHHHHCCCeeeEEEE
Confidence            42      21 22445678889999987654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.52  E-value=0.066  Score=49.20  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC-CCC-CCCcccEEEeccccCC------CC-----------------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSHE------LP-----------------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~-Lp~-~d~sfD~Vls~~~~~~------~~-----------------   73 (297)
                      ++..|+++.+++.|++++....  +.++.+|+.+ ++- ....||+|+++..+.-      ++                 
T Consensus       113 v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d  190 (251)
T TIGR03704       113 LHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD  190 (251)
T ss_pred             EEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc
Confidence            4455778899999988765432  4678888754 221 1357999999864220      00                 


Q ss_pred             ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                          ...++..+.+.|||||++++.....    .    ...+...+...||..
T Consensus       191 gl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~----~~~v~~~l~~~g~~~  235 (251)
T TIGR03704       191 GLDVLRRVAAGAPDWLAPGGHLLVETSER----Q----APLAVEAFARAGLIA  235 (251)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECcc----h----HHHHHHHHHHCCCCc
Confidence                1356677779999999999765422    1    125666777788863

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.52  E-value=0.071  Score=40.70  Aligned_cols=77  Identities=29%  Similarity=0.372  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhhhcCCC-eEEEEccCCC--CCCCC-CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           22 SAVLNAIRDLGDEAVEQCDPQ-IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~~~~-v~~~~~d~~~--Lp~~d-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      .+.+..|+..++......... +.+..++...  +++.. ..||++......++......+.++.++|+|+|.+++....
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500          78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            466666666644332221111 6777777765  78888 5999994444444444678999999999999999988766


Q ss_pred             C
Q 022411           98 T   98 (297)
Q Consensus        98 ~   98 (297)
                      .
T Consensus       158 ~  158 (257)
T COG0500         158 R  158 (257)
T ss_pred             C
Confidence            4

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.51  E-value=0.059  Score=54.59  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC--------------CCC----------
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH--------------ELP----------   73 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~--------------~~~----------   73 (297)
                      +..|+++.+++.|++++...  ..++.++.+|+.. +++..+||+|+++..+.              +-|          
T Consensus       166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dG  244 (506)
T PRK01544        166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDG  244 (506)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccH
Confidence            34467889999999876543  3468888888743 23466899999974211              101          


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                         ...++.++.+.|+|||.+++. .+...       .+.+...+...||..+.
T Consensus       245 l~~~~~il~~a~~~L~~gG~l~lE-ig~~q-------~~~v~~~~~~~g~~~~~  290 (506)
T PRK01544        245 LQAYFIIAENAKQFLKPNGKIILE-IGFKQ-------EEAVTQIFLDHGYNIES  290 (506)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEE-ECCch-------HHHHHHHHHhcCCCceE
Confidence               134567788999999999874 33211       12455566778997654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=95.41  E-value=0.15  Score=45.16  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ++..+-.+++++..++|+++. .+++..+.+++-.. + +-.+||.|+..=.   -..+.+|+.+...|||||++++.-.
T Consensus        61 v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242          61 VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEee
Confidence            334455567777777776554 78899999998644 3 2237999998764   2246889999999999999997654


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCcc
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      .-      + ....+...+...||.
T Consensus       137 tl------E-~~~~a~~~~~~~g~~  154 (187)
T COG2242         137 TL------E-TLAKALEALEQLGGR  154 (187)
T ss_pred             cH------H-HHHHHHHHHHHcCCc
Confidence            32      1 222444567777873

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.37  E-value=0.012  Score=59.09  Aligned_cols=48  Identities=31%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             CCCCCCCCCcccEEEeccc-cCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           50 LSQLPVESFSIDTVLSISS-SHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        50 ~~~Lp~~d~sfD~Vls~~~-~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...|||++++||.|.+.-. ..|.. ...+|-|+-|+|+|||+|++..+.
T Consensus       172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            4689999999999998654 34555 467889999999999999887654

; GO: 0008168 methyltransferase activity

>PLN02366 spermidine synthase

Probab=95.36  E-value=0.058  Score=51.30  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             ccCceEEEeecCCccCh--------------HHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCC--CCCCCcccEE
Q 022411            5 KMQSAVLALSEDKILPV--------------SAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTV   63 (297)
Q Consensus         5 ~~~~~VLll~~~~~vt~--------------~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~L--p~~d~sfD~V   63 (297)
                      .+..+||.|-.|...+.              .++-+.|++.+++....     .++++.++.+|+...  ..+.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            34567888866544332              23335678888765422     257899999986422  1235789999


Q ss_pred             EeccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411           64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        64 ls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++-....+.+     ...+++.+.+.|+|||.+++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            9876433322     3578999999999999997653

>TIGR00417 speE spermidine synthase

Probab=95.33  E-value=0.079  Score=49.06  Aligned_cols=89  Identities=15%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEe
Q 022411            6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls   65 (297)
                      +..+||.|-.|+..              +..++.++|++.+++....     ..+++.++.+|+.. +.-..+.||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            44578888554432              2335556777887765422     14567788777643 2222578999998


Q ss_pred             ccccCCCC-----hHHHHHHHHhcccCCcEEEEE
Q 022411           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .......+     ...+++.+.+.|+|||.+++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65422211     367889999999999999976

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.32  E-value=0.12  Score=46.51  Aligned_cols=42  Identities=31%  Similarity=0.583  Sum_probs=36.7

Q ss_pred             CCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           56 ESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        56 ~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...+||+|++.+.+|-.+   .+.+++...++|+|||.|+++-+-
T Consensus        99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen   99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            356999999999888777   478999999999999999999654

The function of this family is unknown.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.09  E-value=0.097  Score=50.49  Aligned_cols=98  Identities=20%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC-CCeEEEEc-cCCCCCCCCCcccEEEeccc------cCCC--C--hHHHHHHHHhc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD-PQIITQAS-SLSQLPVESFSIDTVLSISS------SHEL--P--GDQLLEEISRV   84 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~-d~~~Lp~~d~sfD~Vls~~~------~~~~--~--~~~~L~ei~Rv   84 (297)
                      ..+-..|+-+.|..-|+.|.++-. ....+... |+..+||++++||.|+.-..      ..-.  .  -..+|..+.++
T Consensus       220 ~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev  299 (347)
T COG1041         220 ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV  299 (347)
T ss_pred             ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH
Confidence            333455999999999998887653 44545544 99999999999999998642      1111  1  36789999999


Q ss_pred             ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ||+||++++..+..            ...++...||..++..
T Consensus       300 Lk~gG~~vf~~p~~------------~~~~~~~~~f~v~~~~  329 (347)
T COG1041         300 LKPGGRIVFAAPRD------------PRHELEELGFKVLGRF  329 (347)
T ss_pred             hhcCcEEEEecCCc------------chhhHhhcCceEEEEE
Confidence            99999999887632            2346788899876654

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.01  E-value=0.0087  Score=48.49  Aligned_cols=36  Identities=22%  Similarity=0.497  Sum_probs=29.3

Q ss_pred             cccEEEeccccCCCCh-------HHHHHHHHhcccCCcEEEEE
Q 022411           59 SIDTVLSISSSHELPG-------DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        59 sfD~Vls~~~~~~~~~-------~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .||+|++.++..|++.       ..+++.+++.|+|||.|++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            3899999998887762       46899999999999999864

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.92  E-value=0.05  Score=50.85  Aligned_cols=87  Identities=17%  Similarity=0.163  Sum_probs=58.8

Q ss_pred             CCCeEEEEccCCCCCCCC---CcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCcc--------chHHH
Q 022411           40 DPQIITQASSLSQLPVES---FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKG--------DVDKA  107 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d---~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--------~~~~~  107 (297)
                      ..++....||+..+..++   ++||+|+..+-+-.-+ .-..+..|.++|||||.++=.-|..-...        .+.-+
T Consensus       143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs  222 (270)
T PF07942_consen  143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELS  222 (270)
T ss_pred             CCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCC
Confidence            456888899998876555   7999999886333323 45789999999999996653322210001        12234


Q ss_pred             HHHHHHHHHHCCcccccch
Q 022411          108 ISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       108 ~~~l~~~L~laGFv~v~~~  126 (297)
                      ++++.......||..+...
T Consensus       223 ~eEi~~l~~~~GF~~~~~~  241 (270)
T PF07942_consen  223 LEEIKELIEKLGFEIEKEE  241 (270)
T ss_pred             HHHHHHHHHHCCCEEEEEE
Confidence            6788888899999986543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.90  E-value=0.048  Score=50.93  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411           41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|.|...++..-++..+.||+|+|.+++.++.   ...++..++..|+|||.|++-.
T Consensus       184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence            357777777765553556799999999999988   3789999999999999999743

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.57  E-value=0.077  Score=47.01  Aligned_cols=93  Identities=16%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhhh-cCCCeEEEEccCCC-CC--CCCCcccEEEeccccCCC---------ChHHHHHHHHhcccCCcE
Q 022411           24 VLNAIRDLGDEAVEQ-CDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGT   90 (297)
Q Consensus        24 lse~m~~~A~~~~~~-~~~~v~~~~~d~~~-Lp--~~d~sfD~Vls~~~~~~~---------~~~~~L~ei~RvLKPGG~   90 (297)
                      +....+..+..++.. ...|+.++.+++.. ++  ++++++|.|+.++.--|.         -...++.+++++|+|||.
T Consensus        49 ~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~  128 (195)
T PF02390_consen   49 IRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGE  128 (195)
T ss_dssp             S-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred             cchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence            333444444444433 46799999998876 32  567999999999852222         137899999999999999


Q ss_pred             EEEEecCCCCccchHHHHHHHHHHHHH--CCcccc
Q 022411           91 ILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDA  123 (297)
Q Consensus        91 l~i~~~~~~~~g~~~~~~~~l~~~L~l--aGFv~v  123 (297)
                      |.+.+-..       .-...+...+..  .+|..+
T Consensus       129 l~~~TD~~-------~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen  129 LYFATDVE-------EYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             EEEEES-H-------HHHHHHHHHHHHHSTTEEEE
T ss_pred             EEEEeCCH-------HHHHHHHHHHHhcCcCeEEc
Confidence            98876431       122244445555  377655

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.50  E-value=0.082  Score=47.86  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=59.6

Q ss_pred             EEEccCCCCCCC---CCcccEEEeccccCCCC-h---HHHHHHHHhcccCCcE-----EEEEecCCCCccchHHHHHHHH
Q 022411           45 TQASSLSQLPVE---SFSIDTVLSISSSHELP-G---DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALE  112 (297)
Q Consensus        45 ~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~-~---~~~L~ei~RvLKPGG~-----l~i~~~~~~~~g~~~~~~~~l~  112 (297)
                      ..+.|+-..|+|   ++.||+|.+..++.++| +   -..+..+++.|+|+|.     |+|..+.+--...---..+.+.
T Consensus        87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~  166 (219)
T PF11968_consen   87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLR  166 (219)
T ss_pred             ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHH
Confidence            446677777764   77999999999999998 3   4789999999999999     8888765311000000123677


Q ss_pred             HHHHHCCcccccchh
Q 022411          113 GKLLLAGFLDAQRIQ  127 (297)
Q Consensus       113 ~~L~laGFv~v~~~~  127 (297)
                      ..+..-||.-+....
T Consensus       167 ~im~~LGf~~~~~~~  181 (219)
T PF11968_consen  167 EIMESLGFTRVKYKK  181 (219)
T ss_pred             HHHHhCCcEEEEEEe
Confidence            788999999877543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=94.42  E-value=0.2  Score=44.59  Aligned_cols=99  Identities=19%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCC-eEEEEccCCCCCCCCCcccEEEecc-----ccCC-CC---hHHHHHHHHhcccC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQ-IITQASSLSQLPVESFSIDTVLSIS-----SSHE-LP---GDQLLEEISRVLKP   87 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~-v~~~~~d~~~Lp~~d~sfD~Vls~~-----~~~~-~~---~~~~L~ei~RvLKP   87 (297)
                      ++..|+++...++|++.++.. ..+ |.|.+.|+..-.+-.+.||+|+---     +++- -+   +...+..+-+.|+|
T Consensus        94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~  173 (227)
T KOG1271|consen   94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP  173 (227)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence            556788998889888766543 333 9999999988777788999997421     1221 11   24567889999999


Q ss_pred             CcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ||+|+|..=.-        +..++...+...||+-...
T Consensus       174 ~gifvItSCN~--------T~dELv~~f~~~~f~~~~t  203 (227)
T KOG1271|consen  174 GGIFVITSCNF--------TKDELVEEFENFNFEYLST  203 (227)
T ss_pred             CcEEEEEecCc--------cHHHHHHHHhcCCeEEEEe
Confidence            99999875321        2236777788788876543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.42  E-value=0.15  Score=47.31  Aligned_cols=66  Identities=27%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             cccEEEeccccCCC-C----hHHHHHHHHhcccCCcEEEEEecCCCCc---cc-----hHHHHHHHHHHHHHCCccccc
Q 022411           59 SIDTVLSISSSHEL-P----GDQLLEEISRVLKPGGTILIYKKLTSDK---GD-----VDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        59 sfD~Vls~~~~~~~-~----~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~-----~~~~~~~l~~~L~laGFv~v~  124 (297)
                      .||+|++.+.+... +    -..+++.+.+.|||||.|++......+.   |.     +.-..+.++..|..+||....
T Consensus       158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~  236 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED  236 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred             chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence            59999998854322 1    2689999999999999999887665431   11     111234677889999997544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=94.32  E-value=0.066  Score=45.79  Aligned_cols=75  Identities=5%  Similarity=-0.019  Sum_probs=52.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhc--ccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRV--LKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~Rv--LKPGG~l~i~~   95 (297)
                      .++..|+.+.|.+.++++... ..++.++.+|+..+++++..||.|+++..++..  ...+..+.+.  +.++|.|++..
T Consensus        37 ~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       37 RVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             eEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            344556777888888776543 468999999999999888889999998766542  3444555443  44777777653

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.26  E-value=0.059  Score=51.60  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=58.6

Q ss_pred             EeecCCccC---hHHHHHHHHHHHHHHhhhc---CC----CeEEEEccC------CCCCCCCCcccEEEeccccCCC-C-
Q 022411           12 ALSEDKILP---VSAVLNAIRDLGDEAVEQC---DP----QIITQASSL------SQLPVESFSIDTVLSISSSHEL-P-   73 (297)
Q Consensus        12 ll~~~~~vt---~~dlse~m~~~A~~~~~~~---~~----~v~~~~~d~------~~Lp~~d~sfD~Vls~~~~~~~-~-   73 (297)
                      +=|+-+...   ..|+.+.-+++|+++....   ..    .+.|+.+|-      ..+++++.+||+|-+-+++|+. . 
T Consensus       133 lKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet  212 (389)
T KOG1975|consen  133 LKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET  212 (389)
T ss_pred             hHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeecc
Confidence            346655544   5677777777777654332   11    356666643      2346677779999999998863 2 


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         ...+|..+.+.|||||.|+-+.+.
T Consensus       213 ee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  213 EESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence               367899999999999999955543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.24  E-value=0.053  Score=49.33  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=54.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-----CCCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-----~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      .++..|..+++.+.|+++.++.  ..++.++.+++... +     .+..+||+|+.-..-.  .....+.++.+.|+|||
T Consensus        95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~--~y~~~~~~~~~ll~~GG  172 (234)
T PLN02781         95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP--NYVHFHEQLLKLVKVGG  172 (234)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH--HHHHHHHHHHHhcCCCe
Confidence            4445567778888898877654  35799999988643 2     1246899999864321  12467899999999999


Q ss_pred             EEEEEec
Q 022411           90 TILIYKK   96 (297)
Q Consensus        90 ~l~i~~~   96 (297)
                      .+++-+.
T Consensus       173 ~ii~dn~  179 (234)
T PLN02781        173 IIAFDNT  179 (234)
T ss_pred             EEEEEcC
Confidence            9887653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.15  E-value=0.12  Score=48.90  Aligned_cols=79  Identities=23%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEeccccCCCC--h----HHHHHHHHhcccCCc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSHELP--G----DQLLEEISRVLKPGG   89 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~--~----~~~L~ei~RvLKPGG   89 (297)
                      ..+|+-|+...-++.|+.+++... .+..++.+++.. +..+ +||.|+++-.+|.=.  .    .+++.+..+.|++||
T Consensus       183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG  260 (300)
T COG2813         183 AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG  260 (300)
T ss_pred             CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence            345566778888888988775443 333455555432 3344 999999999887422  2    488999999999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      .|+|.-..
T Consensus       261 eL~iVan~  268 (300)
T COG2813         261 ELWIVANR  268 (300)
T ss_pred             EEEEEEcC
Confidence            99888653

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=93.96  E-value=0.11  Score=45.29  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC-CC--------hHHHHHHHHhcccCCc
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP--------GDQLLEEISRVLKPGG   89 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-~~--------~~~~L~ei~RvLKPGG   89 (297)
                      .-|..+.+++.|++++...  ...+.+.+.|+..+|+.++++|+|+++..+-. +.        -..+++++.|+|++ .
T Consensus        66 g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~  144 (179)
T PF01170_consen   66 GSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R  144 (179)
T ss_dssp             EEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C
T ss_pred             ecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C
Confidence            3456678888888877554  44688999999999988899999999875432 11        14678889999999 4


Q ss_pred             EEEEEe
Q 022411           90 TILIYK   95 (297)
Q Consensus        90 ~l~i~~   95 (297)
                      .+++..
T Consensus       145 ~v~l~~  150 (179)
T PF01170_consen  145 AVFLTT  150 (179)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.94  E-value=0.046  Score=50.13  Aligned_cols=115  Identities=15%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             eEEEeecCCccC------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC-CCC-CCCCcccEEEeccccCCCC-
Q 022411            9 AVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP-   73 (297)
Q Consensus         9 ~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~-~Lp-~~d~sfD~Vls~~~~~~~~-   73 (297)
                      ++|-|--|+.++            ..|+|+.|+++|.++-  .+..  ..++++. -++ ..+..||+|.+.-++.++- 
T Consensus       128 ~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg--~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~  203 (287)
T COG4976         128 RMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG--LYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGA  203 (287)
T ss_pred             eeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc--chHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence            466666666665            3488999999987642  1110  1122222 112 4578899999998888887 


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCCcc-----c---hHHHHHHHHHHHHHCCcccccchh
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKLTSDKG-----D---VDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g-----~---~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .+.++.-....|+|||.|.++.-.-...+     +   +.|.-+-++..+...||..++...
T Consensus       204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         204 LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence            78899999999999999988753322112     1   112334567788999998776543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=93.93  E-value=0.16  Score=45.92  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             CCccChHHHHHHHHHHHHHH-hh-h-----------cCCCeEEEEccCCCCCCCC-CcccEEEeccccCCCC---hHHHH
Q 022411           16 DKILPVSAVLNAIRDLGDEA-VE-Q-----------CDPQIITQASSLSQLPVES-FSIDTVLSISSSHELP---GDQLL   78 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~-~~-~-----------~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~---~~~~L   78 (297)
                      |-.|+..|+++.-++.+.+. .. .           ...+|.+.++|+-+++-.. +.||+|+=...++-++   .....
T Consensus        59 G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya  138 (218)
T PF05724_consen   59 GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYA  138 (218)
T ss_dssp             TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHH
T ss_pred             CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHH
Confidence            44556668888777776432 11 0           1236789999998886444 3799999887777777   37889


Q ss_pred             HHHHhcccCCcEE--EEEecCCCC-ccchHHH-HHHHHHHHHHCCccc
Q 022411           79 EEISRVLKPGGTI--LIYKKLTSD-KGDVDKA-ISALEGKLLLAGFLD  122 (297)
Q Consensus        79 ~ei~RvLKPGG~l--~i~~~~~~~-~g~~~~~-~~~l~~~L~laGFv~  122 (297)
                      +.+.++|+|||++  +..+..... .|++-.. .+++. .+.-.+|..
T Consensus       139 ~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~-~l~~~~f~i  185 (218)
T PF05724_consen  139 QQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVR-ELFGPGFEI  185 (218)
T ss_dssp             HHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHH-HHHTTTEEE
T ss_pred             HHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHH-HHhcCCcEE
Confidence            9999999999994  333333222 2443222 23444 344477754

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.74  E-value=0.34  Score=43.51  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=50.7

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCC-----CC---hHHHHHHHHhcccCCcEEEEEecCCCC-ccchHH----
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHE-----LP---GDQLLEEISRVLKPGGTILIYKKLTSD-KGDVDK----  106 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-----~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~----  106 (297)
                      ..|++.+-..+..++ +.+..|++......|-     ++   ...+..++++.|||||.+.+.++.... .+..+.    
T Consensus       104 ~aN~e~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~  182 (238)
T COG4798         104 YANVEVIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLH  182 (238)
T ss_pred             hhhhhhhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhc
Confidence            334444444555555 4455666655432221     22   478999999999999999999986321 111111    


Q ss_pred             --HHHHHHHHHHHCCccccc
Q 022411          107 --AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus       107 --~~~~l~~~L~laGFv~v~  124 (297)
                        ....+..+...+||.-..
T Consensus       183 ri~~a~V~a~veaaGFkl~a  202 (238)
T COG4798         183 RIDPAVVIAEVEAAGFKLEA  202 (238)
T ss_pred             ccChHHHHHHHHhhcceeee
Confidence              123567788999998544

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=93.70  E-value=0.62  Score=42.48  Aligned_cols=124  Identities=22%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             ccccCceEEEeecCCccC---hHHHHH----------------HHHHHHHHHhhhcCCCeEEEEccCCCC---CCCCCcc
Q 022411            3 TGKMQSAVLALSEDKILP---VSAVLN----------------AIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSI   60 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~vt---~~dlse----------------~m~~~A~~~~~~~~~~v~~~~~d~~~L---p~~d~sf   60 (297)
                      .++.|.+||+|--.+.+|   +.|++.                .+++.|     +.-+||..+.+|+..-   ..--+.+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-----~~R~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-----KKRPNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-----HHSTTEEEEES-TTSGGGGTTTS--E
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-----ccCCceeeeeccCCChHHhhcccccc
Confidence            356788999996544444   555544                333333     3346888888888632   1113378


Q ss_pred             cEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhccccC
Q 022411           61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVV  132 (297)
Q Consensus        61 D~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~  132 (297)
                      |+|++-.+ +.-..+.++.....-||+||.+++..-..+  ...++...+.+-...|...||...+..+..|..
T Consensus       145 DvI~~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~  217 (229)
T PF01269_consen  145 DVIFQDVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYE  217 (229)
T ss_dssp             EEEEEE-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTS
T ss_pred             cEEEecCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCC
Confidence            99998754 211146677788889999999988753211  112344455566677888899988777666653

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=93.70  E-value=0.06  Score=47.87  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             ccccCceEEEeecCCccChHHHHHHHH------HHHHHHhhhc-CCCeEEEEccCC-CC-CCCCCcccEEEeccccCCCC
Q 022411            3 TGKMQSAVLALSEDKILPVSAVLNAIR------DLGDEAVEQC-DPQIITQASSLS-QL-PVESFSIDTVLSISSSHELP   73 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~vt~~dlse~m~------~~A~~~~~~~-~~~v~~~~~d~~-~L-p~~d~sfD~Vls~~~~~~~~   73 (297)
                      .++.|.+||-|-=|...-..-+.++..      ++...++.++ ...+.++++|++ .| .|++.+||.|+.+.+++++.
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~   89 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR   89 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence            466788888885553332222222110      0111112221 345778888886 45 48999999999999998887


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       +..+|.|+.|+   |...+|.-++
T Consensus        90 ~P~~vL~EmlRV---gr~~IVsFPN  111 (193)
T PF07021_consen   90 RPDEVLEEMLRV---GRRAIVSFPN  111 (193)
T ss_pred             HHHHHHHHHHHh---cCeEEEEecC
Confidence             89999999888   4455655543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=93.28  E-value=0.098  Score=48.32  Aligned_cols=41  Identities=22%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             CCCCCcccEEEeccccCCCC-------hHHHHHHHHhcccCCcEEEEE
Q 022411           54 PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        54 p~~d~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .+....||+|++.....|++       ...+++.|++.|.|||+|++.
T Consensus       161 ~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  161 DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence            34577899999988766655       268999999999999999853

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=93.21  E-value=0.28  Score=46.52  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      ..||+|+++-.-.  +...+..++.+.|||||+++++-..       ..-.+.+...+..+||..+....
T Consensus       228 ~~~DvIVANILA~--vl~~La~~~~~~lkpgg~lIlSGIl-------~~q~~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         228 GPFDVIVANILAE--VLVELAPDIKRLLKPGGRLILSGIL-------EDQAESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             CcccEEEehhhHH--HHHHHHHHHHHHcCCCceEEEEeeh-------HhHHHHHHHHHHhCCCeEeEEEe
Confidence            5999999985211  1357889999999999999987533       22233566677789999766543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=92.92  E-value=0.12  Score=46.96  Aligned_cols=81  Identities=21%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEE-ccCC-CCC-CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQA-SSLS-QLP-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT   90 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~-~d~~-~Lp-~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~   90 (297)
                      ++.++-.+.-+++.+.|+++.++.  ...|+.+. ++.. .+. +..++||+||.-..-..  -...+..+.+.|+|||.
T Consensus        84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~--yp~~le~~~~lLr~GGl  161 (219)
T COG4122          84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKAD--YPEYLERALPLLRPGGL  161 (219)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhh--CHHHHHHHHHHhCCCcE
Confidence            344556678889999999887654  34477777 3543 222 45789999998653222  25789999999999999


Q ss_pred             EEEEecCC
Q 022411           91 ILIYKKLT   98 (297)
Q Consensus        91 l~i~~~~~   98 (297)
                      +++-+...
T Consensus       162 iv~DNvl~  169 (219)
T COG4122         162 IVADNVLF  169 (219)
T ss_pred             EEEeeccc
Confidence            99887553

>PLN02672 methionine S-methyltransferase

Probab=92.91  E-value=0.41  Score=52.74  Aligned_cols=104  Identities=14%  Similarity=0.035  Sum_probs=69.8

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc-----------------CCCeEEEEccCCCCCCCC--CcccEEEecccc--------
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC-----------------DPQIITQASSLSQLPVES--FSIDTVLSISSS--------   69 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~-----------------~~~v~~~~~d~~~Lp~~d--~sfD~Vls~~~~--------   69 (297)
                      ..++..|+++.+++.|++|+...                 ..++.++.+|+.... .+  ..||+|+++-.+        
T Consensus       143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~  221 (1082)
T PLN02672        143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEA  221 (1082)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhh
Confidence            34556688899999998877542                 136899999986543 22  269999998531        


Q ss_pred             -------C-----------CCC--h-----------HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHH-HHHHH
Q 022411           70 -------H-----------ELP--G-----------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALE-GKLLL  117 (297)
Q Consensus        70 -------~-----------~~~--~-----------~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~-~~L~l  117 (297)
                             +           +..  .           ..++.+..+.|+|||.+++.....     ..   +.+. +.+..
T Consensus       222 l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----q~---~~v~~~l~~~  293 (1082)
T PLN02672        222 MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----PG---QAVCERLFER  293 (1082)
T ss_pred             cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----HH---HHHHHHHHHH
Confidence                   0           011  0           467788888999999988654321     11   1455 46778


Q ss_pred             CCcccccchhcc
Q 022411          118 AGFLDAQRIQLK  129 (297)
Q Consensus       118 aGFv~v~~~~~k  129 (297)
                      .||..+..+..+
T Consensus       294 ~gf~~~~~~~~~  305 (1082)
T PLN02672        294 RGFRITKLWQTK  305 (1082)
T ss_pred             CCCCeeEEeeeh
Confidence            999988776654

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=92.50  E-value=0.21  Score=45.46  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC--CCCCCcccEEEecccc-CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSS-HELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~-~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +++...|++.+=.    ...+|..+.+..+..  .++|.+||-|+.-.-. ++-....+.+.+.|+|||+|++.+.+..
T Consensus       134 p~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  134 PDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             HHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            4666677665421    224566666644322  2569999999986532 2223567889999999999999877644

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.40  E-value=0.27  Score=49.27  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-----------hHHHHHHHHhcccCCcE
Q 022411           22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-----------GDQLLEEISRVLKPGGT   90 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-----------~~~~L~ei~RvLKPGG~   90 (297)
                      .|.+....+....+.....+.+.+...++..+.|++++||+|+---.++.+.           ....+.+++|+|+|||+
T Consensus        77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk  156 (482)
T KOG2352|consen   77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK  156 (482)
T ss_pred             ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence            3444444444333333556778999999999999999999999765433221           24567899999999999


Q ss_pred             EEEEec
Q 022411           91 ILIYKK   96 (297)
Q Consensus        91 l~i~~~   96 (297)
                      ++....
T Consensus       157 ~~svtl  162 (482)
T KOG2352|consen  157 YISVTL  162 (482)
T ss_pred             EEEEEe
Confidence            977665

>PRK13699 putative methylase; Provisional

Probab=92.39  E-value=0.27  Score=44.64  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=43.7

Q ss_pred             EEEccCCCC--CCCCCcccEEEeccccC----C-----C------C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHH
Q 022411           45 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L------P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK  106 (297)
Q Consensus        45 ~~~~d~~~L--p~~d~sfD~Vls~~~~~----~-----~------~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~  106 (297)
                      +..+|...+  .++++++|+|+.--.+.    .     +      . ....+.|++|+|||||.+++.....    ..  
T Consensus         4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~--   77 (227)
T PRK13699          4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RV--   77 (227)
T ss_pred             EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cH--
Confidence            334444332  46688888888763221    0     0      1 2478899999999999998643211    01  


Q ss_pred             HHHHHHHHHHHCCccccc
Q 022411          107 AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus       107 ~~~~l~~~L~laGFv~v~  124 (297)
                        ..+...+..+||.-.+
T Consensus        78 --~~~~~al~~~GF~l~~   93 (227)
T PRK13699         78 --DRFMAAWKNAGFSVVG   93 (227)
T ss_pred             --HHHHHHHHHCCCEEee
Confidence              1344567788998543

>PRK00536 speE spermidine synthase; Provisional

Probab=92.30  E-value=0.37  Score=44.86  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHh-----hhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCC
Q 022411           26 NAIRDLGDEAV-----EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD  100 (297)
Q Consensus        26 e~m~~~A~~~~-----~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~  100 (297)
                      +++++.+++-.     .-.++++..+.. +.+  ...++||+|+.-..    ++...++.+.|+|+|||.++.+..... 
T Consensus       104 ~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~-  175 (262)
T PRK00536        104 EKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLKEDGVFISVAKHPL-  175 (262)
T ss_pred             HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcCCCcEEEECCCCcc-
Confidence            34555555411     223778887752 211  12468999998742    346788999999999999997643221 


Q ss_pred             ccchHHHHHHHHHHHHHCCccccc
Q 022411          101 KGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus       101 ~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                       -. ......+.+.+.. .|..+.
T Consensus       176 -~~-~~~~~~i~~~l~~-~F~~v~  196 (262)
T PRK00536        176 -LE-HVSMQNALKNMGD-FFSIAM  196 (262)
T ss_pred             -cC-HHHHHHHHHHHHh-hCCceE
Confidence             01 1223345555554 676544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.96  E-value=0.54  Score=42.64  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHHHHHhhhc-----------CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           21 VSAVLNAIRDLGDEAVEQC-----------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-----------~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      ..+..+++.+.+.+++.+.           ..++.++.+|....--+.+.||.|++.....     ...+++...|+|||
T Consensus       113 GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~-----~~pq~l~dqL~~gG  187 (237)
T KOG1661|consen  113 GIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS-----ELPQELLDQLKPGG  187 (237)
T ss_pred             chhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCcc-----ccHHHHHHhhccCC
Confidence            3455556666665554321           3568888999988877888999999986544     45578899999999


Q ss_pred             EEEEEec
Q 022411           90 TILIYKK   96 (297)
Q Consensus        90 ~l~i~~~   96 (297)
                      +++|-..
T Consensus       188 rllip~~  194 (237)
T KOG1661|consen  188 RLLIPVG  194 (237)
T ss_pred             eEEEeec
Confidence            9997543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=91.83  E-value=0.15  Score=48.34  Aligned_cols=108  Identities=18%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             cccCceEEEeecCCccC-------------hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt-------------~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      .+.|.+||-+-.|+.+-             ..|+-+...+.|+++++..  ..++.+  ....  .+....||+|+++-.
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~--~~~~~~~dlvvANI~  234 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSE--DLVEGKFDLVVANIL  234 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTS--CTCCS-EEEEEEES-
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEec--ccccccCCEEEECCC
Confidence            34567888887666543             2234445566666665432  223333  2222  233589999999853


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ..-  ...++..+.+.|+|||+|+++-...       .....+...+. .||..++.
T Consensus       235 ~~v--L~~l~~~~~~~l~~~G~lIlSGIl~-------~~~~~v~~a~~-~g~~~~~~  281 (295)
T PF06325_consen  235 ADV--LLELAPDIASLLKPGGYLILSGILE-------EQEDEVIEAYK-QGFELVEE  281 (295)
T ss_dssp             HHH--HHHHHHHCHHHEEEEEEEEEEEEEG-------GGHHHHHHHHH-TTEEEEEE
T ss_pred             HHH--HHHHHHHHHHhhCCCCEEEEccccH-------HHHHHHHHHHH-CCCEEEEE
Confidence            221  3467888999999999999875432       12235555665 49986543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=91.78  E-value=0.22  Score=49.45  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC----CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~----Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      +...|.++.|++.|++++... ..++.++.+|+..    +++.+++||+|++.......  ...+..+.+ |+|++.+++
T Consensus       322 V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~--~~~~~~l~~-~~~~~ivyv  398 (443)
T PRK13168        322 VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA--AEVMQALAK-LGPKRIVYV  398 (443)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh--HHHHHHHHh-cCCCeEEEE
Confidence            335588899999999876543 3479999999864    34556789999987643332  345655555 799999988


Q ss_pred             EecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           94 YKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      .-..       .+..+++ ..|..+||.-..
T Consensus       399 SCnp-------~tlaRDl-~~L~~~gY~l~~  421 (443)
T PRK13168        399 SCNP-------ATLARDA-GVLVEAGYRLKR  421 (443)
T ss_pred             EeCh-------HHhhccH-HHHhhCCcEEEE
Confidence            7532       1111122 345568887544

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=91.65  E-value=0.48  Score=49.93  Aligned_cols=96  Identities=14%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--C-CCeEEEEccCCCC-CCCCCcccEEEeccccCC--------C---C-hHHHHHHHH
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQL-PVESFSIDTVLSISSSHE--------L---P-GDQLLEEIS   82 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~-~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~--------~---~-~~~~L~ei~   82 (297)
                      |+..|+++.+++.|+++++..  . .++.++.+|+... .-....||+|++.....-        +   . ...++..+.
T Consensus       564 V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~  643 (702)
T PRK11783        564 TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAK  643 (702)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHH
Confidence            567789999999999887543  2 3689999987542 111468999999753211        0   0 246788889


Q ss_pred             hcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        83 RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ++|+|||.|++......    +.    .....+..+||.-
T Consensus       644 ~lL~~gG~l~~~~~~~~----~~----~~~~~~~~~g~~~  675 (702)
T PRK11783        644 RLLRPGGTLYFSNNKRG----FK----MDEEGLAKLGLKA  675 (702)
T ss_pred             HHcCCCCEEEEEeCCcc----CC----hhHHHHHhCCCeE
Confidence            99999999987653321    11    1244566678764

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=91.59  E-value=0.4  Score=43.69  Aligned_cols=67  Identities=13%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             HHHHHHhhhcCC-CeEEEEccCCCC---CCCCCcccEEEeccccCCCC---------hHHHHHHHHhcccCCcEEEEEec
Q 022411           30 DLGDEAVEQCDP-QIITQASSLSQL---PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        30 ~~A~~~~~~~~~-~v~~~~~d~~~L---p~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ..+..++..... |+..+..|+..+   =+++++.|-|+.++.--|..         ...+++.+.++|||||.|.+.+-
T Consensus        86 ~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220          86 AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            333333444444 899998887644   23556999999998633321         37899999999999999998764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=91.50  E-value=0.38  Score=46.21  Aligned_cols=76  Identities=20%  Similarity=0.112  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHhhh-------c----CCCeEEEEccCCCC----CCCC--CcccEEEeccccCCC-C----hHHHHH
Q 022411           22 SAVLNAIRDLGDEAVEQ-------C----DPQIITQASSLSQL----PVES--FSIDTVLSISSSHEL-P----GDQLLE   79 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~-------~----~~~v~~~~~d~~~L----p~~d--~sfD~Vls~~~~~~~-~----~~~~L~   79 (297)
                      .|++.+-++.|+++..+       .    .-...++.+|.-.-    -+.+  ..||+|-+.+++|+. .    ...+|.
T Consensus        91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~  170 (331)
T PF03291_consen   91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLK  170 (331)
T ss_dssp             EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHH
Confidence            45566555666555411       1    12456677755322    1333  599999999999974 3    267899


Q ss_pred             HHHhcccCCcEEEEEecC
Q 022411           80 EISRVLKPGGTILIYKKL   97 (297)
Q Consensus        80 ei~RvLKPGG~l~i~~~~   97 (297)
                      .+.+.|||||+|+...+.
T Consensus       171 Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  171 NVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HHHHTEEEEEEEEEEEE-
T ss_pred             HHHHhcCCCCEEEEEecC
Confidence            999999999999988764

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=91.46  E-value=0.25  Score=46.01  Aligned_cols=39  Identities=26%  Similarity=0.461  Sum_probs=33.8

Q ss_pred             CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        57 d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      +..||+|.+.+.+-... |..+|++|++.|+|+|++++..
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            46799999998876555 8899999999999999998874

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.04  E-value=0.24  Score=43.10  Aligned_cols=70  Identities=21%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             CCcccEEEeccccCCCC------------hHHHHHHHHhcccCCcEEEEEecCCCCc--cchHHHHHHHHHHHHHCCccc
Q 022411           57 SFSIDTVLSISSSHELP------------GDQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        57 d~sfD~Vls~~~~~~~~------------~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~~~~~~~l~~~L~laGFv~  122 (297)
                      .++||.+.+..++.|+-            ....+.++.++|||||.|++..+.....  .+.-.....++-.+++.||.-
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~  140 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW  140 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence            46799988877654331            2578899999999999999998763210  001122345566789999997


Q ss_pred             ccch
Q 022411          123 AQRI  126 (297)
Q Consensus       123 v~~~  126 (297)
                      +...
T Consensus       141 i~tf  144 (177)
T PF03269_consen  141 IDTF  144 (177)
T ss_pred             Eeee
Confidence            7654

>PLN02823 spermine synthase

Probab=90.71  E-value=0.31  Score=46.98  Aligned_cols=87  Identities=14%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             ceEEEeecCCccC--------------hHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEecc
Q 022411            8 SAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLSIS   67 (297)
Q Consensus         8 ~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~   67 (297)
                      .+||++-.|...+              ..++-+++++.+++....     .++++.++.+|+.. +.-..+.||+|+.-.
T Consensus       105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~  184 (336)
T PLN02823        105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL  184 (336)
T ss_pred             CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence            4677775554332              335556788888764321     25789999988754 344467899999864


Q ss_pred             ccC-------CCChHHHHH-HHHhcccCCcEEEEE
Q 022411           68 SSH-------ELPGDQLLE-EISRVLKPGGTILIY   94 (297)
Q Consensus        68 ~~~-------~~~~~~~L~-ei~RvLKPGG~l~i~   94 (297)
                      .-.       .+....+++ .+.+.|+|||.+++.
T Consensus       185 ~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        185 ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            211       122467887 899999999998765

>PRK11524 putative methyltransferase; Provisional

Probab=90.66  E-value=0.23  Score=46.39  Aligned_cols=53  Identities=21%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             eEEEEccCCCC--CCCCCcccEEEeccccCC----------------CC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           43 IITQASSLSQL--PVESFSIDTVLSISSSHE----------------LP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        43 v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~----------------~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..+.++|...+  .+++++||+|++.-.+..                .. ....+.++.|+|||||.+++..
T Consensus         9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            34566666543  466889999998643210                01 2468899999999999999863

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=90.24  E-value=4  Score=37.39  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=58.5

Q ss_pred             cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhh-----hcCCCeEEEEccCCCC-CCCCC-cccEEE
Q 022411            6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVE-----QCDPQIITQASSLSQL-PVESF-SIDTVL   64 (297)
Q Consensus         6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~-----~~~~~v~~~~~d~~~L-p~~d~-sfD~Vl   64 (297)
                      +..+||+|-.|...              +.-++-+.+++.+++-..     ..++++..+.+|+... --... .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            34578887654433              333556677777776321     2367899999988432 11233 899999


Q ss_pred             eccccCC-----CChHHHHHHHHhcccCCcEEEEEec
Q 022411           65 SISSSHE-----LPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        65 s~~~~~~-----~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .-..-..     +-...+++.+.+.|+|||.+++...
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            8543211     2247899999999999999998763

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=89.85  E-value=1.1  Score=44.11  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--C-CCeEEEEccCCCCC--C--CCCcccEEEeccccCCCC----------hHHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQLP--V--ESFSIDTVLSISSSHELP----------GDQLLEE   80 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~-~~v~~~~~d~~~Lp--~--~d~sfD~Vls~~~~~~~~----------~~~~L~e   80 (297)
                      .|+..|+++.+++.|+++++..  . .++.++.+|+...-  +  ...+||+|++......-.          -..++..
T Consensus       245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~  324 (396)
T PRK15128        245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML  324 (396)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHH
Confidence            3455688889999999887543  2 36899999986531  1  245899999985432111          1234456


Q ss_pred             HHhcccCCcEEEEEe
Q 022411           81 ISRVLKPGGTILIYK   95 (297)
Q Consensus        81 i~RvLKPGG~l~i~~   95 (297)
                      ..++|+|||.|+...
T Consensus       325 a~~lLk~gG~lv~~s  339 (396)
T PRK15128        325 AIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHcCCCeEEEEEe
Confidence            789999999998754

>PHA03412 putative methyltransferase; Provisional

Probab=89.51  E-value=0.59  Score=43.02  Aligned_cols=68  Identities=13%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC------------C-hHHHHHHHHhc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL------------P-GDQLLEEISRV   84 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~------------~-~~~~L~ei~Rv   84 (297)
                      .++..|+.+.+.++|+++.    .++.++.+|+...++ +.+||+|+++-.++..            . ...++....|+
T Consensus        78 ~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L  152 (241)
T PHA03412         78 EIVCVELNHTYYKLGKRIV----PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI  152 (241)
T ss_pred             EEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH
Confidence            4555567777888887653    357888999987665 5689999999654311            1 24578888886


Q ss_pred             ccCCcE
Q 022411           85 LKPGGT   90 (297)
Q Consensus        85 LKPGG~   90 (297)
                      |+||+.
T Consensus       153 l~~G~~  158 (241)
T PHA03412        153 ARQGTF  158 (241)
T ss_pred             cCCCEE
Confidence            666664

>PLN02476 O-methyltransferase

Probab=88.98  E-value=0.4  Score=45.04  Aligned_cols=75  Identities=12%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-C----CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l   91 (297)
                      +..+..+++.++|+++.++.  ..+|.++.+++.. |+ +    ..++||+|+.-..-..  -...+..+.+.|+|||.+
T Consensus       147 ~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~--Y~~y~e~~l~lL~~GGvI  224 (278)
T PLN02476        147 VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRM--YQDYFELLLQLVRVGGVI  224 (278)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHH--HHHHHHHHHHhcCCCcEE
Confidence            33455667888888876554  3479999998753 32 1    1368999998764211  256788899999999999


Q ss_pred             EEEec
Q 022411           92 LIYKK   96 (297)
Q Consensus        92 ~i~~~   96 (297)
                      ++-+.
T Consensus       225 V~DNv  229 (278)
T PLN02476        225 VMDNV  229 (278)
T ss_pred             EEecC
Confidence            87654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=88.91  E-value=0.37  Score=48.60  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CCCCCCCCcccEEEeccccCC----CChHHHHHHHHhcccCCcEEEEEecC
Q 022411           51 SQLPVESFSIDTVLSISSSHE----LPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        51 ~~Lp~~d~sfD~Vls~~~~~~----~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.++.-+.+||+|.+...+..    +....++-|+-|+|+|||.++|.+..
T Consensus       419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            344555689999998754332    33578899999999999999998753

; GO: 0008168 methyltransferase activity

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=88.12  E-value=1.5  Score=43.16  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=57.6

Q ss_pred             CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC----CCCCCcccEEEecccc
Q 022411            7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL----PVESFSIDTVLSISSS   69 (297)
Q Consensus         7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L----p~~d~sfD~Vls~~~~   69 (297)
                      +.+||-+-.|+.            |...|.++.|++.|++++... ..+++++.+|+..+    ++.+.+||+|+....-
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr  372 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR  372 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence            456666655433            335578889999998876543 45799999998642    3445689999976542


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..+ ...++..+.+ |+|++.+++.-
T Consensus       373 ~G~-~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       373 KGC-AAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             CCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence            222 2456666554 89998887753

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=88.10  E-value=0.31  Score=40.24  Aligned_cols=71  Identities=25%  Similarity=0.356  Sum_probs=45.9

Q ss_pred             CeEEEEccCCC-CCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH
Q 022411           42 QIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL  116 (297)
Q Consensus        42 ~v~~~~~d~~~-Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~  116 (297)
                      .+....+|+.. ++--...||+|+.- ++-..-|   ...++++|+|+++|||++.-+...           ..+++.|.
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~L~  100 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRALQ  100 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHHHH
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHHHH
Confidence            45566788753 34224789999975 3222222   478999999999999999743321           26888999


Q ss_pred             HCCcccc
Q 022411          117 LAGFLDA  123 (297)
Q Consensus       117 laGFv~v  123 (297)
                      .+||...
T Consensus       101 ~aGF~v~  107 (124)
T PF05430_consen  101 QAGFEVE  107 (124)
T ss_dssp             HCTEEEE
T ss_pred             HcCCEEE
Confidence            9999854

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=87.59  E-value=1  Score=40.04  Aligned_cols=76  Identities=7%  Similarity=-0.045  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHh--cccCCcEEEEEecC
Q 022411           22 SAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILIYKKL   97 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~R--vLKPGG~l~i~~~~   97 (297)
                      .+..+...+.++++++.. ..++.++.+|+.. ++.....||+|++.-.++.-....++..+..  .|+|+|.+++....
T Consensus        82 vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909         82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            345566777777766544 2468899998864 3323457999999987543223455665555  37999988876543

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=87.29  E-value=4.5  Score=37.29  Aligned_cols=117  Identities=16%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CceEEEeecCCccC-------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC-CCCCC-CCcccEEEeccccCC
Q 022411            7 QSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVE-SFSIDTVLSISSSHE   71 (297)
Q Consensus         7 ~~~VLll~~~~~vt-------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~-~Lp~~-d~sfD~Vls~~~~~~   71 (297)
                      |.+||.|-++-.++             +-|+=+.+++..++.+++....|.....|+. .||-. .+.||+++.--...-
T Consensus        45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~  124 (243)
T PF01861_consen   45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP  124 (243)
T ss_dssp             T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSH
T ss_pred             CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCH
Confidence            45677776644433             4466677788777666666556888888886 34411 368999998753221


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      --...+++.-...||.-|...+.-....  ......|..+++.+...||+....
T Consensus       125 ~G~~LFlsRgi~~Lk~~g~~gy~~~~~~--~~s~~~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  125 EGLKLFLSRGIEALKGEGCAGYFGFTHK--EASPDKWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             HHHHHHHHHHHHTB-STT-EEEEEE-TT--T--HHHHHHHHHHHHTS--EEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEEecC--cCcHHHHHHHHHHHHHCCcCHHHH
Confidence            1146788888889998774433322221  112334668899999999986543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=86.92  E-value=0.45  Score=43.92  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-CC-----CCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-VE-----SFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~~-----d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      ++-.+..++..+.|++..++.  ..+|+++.+++.. |+ +.     .++||+|+.-..-..  -...+..+.+.|+|||
T Consensus       107 v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~--Y~~y~~~~l~ll~~GG  184 (247)
T PLN02589        107 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDN--YINYHKRLIDLVKVGG  184 (247)
T ss_pred             EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHH--hHHHHHHHHHhcCCCe
Confidence            333344467778888776554  4689999998753 23 11     268999998754221  2456778889999999


Q ss_pred             EEEEEec
Q 022411           90 TILIYKK   96 (297)
Q Consensus        90 ~l~i~~~   96 (297)
                      .+++-+.
T Consensus       185 viv~DNv  191 (247)
T PLN02589        185 VIGYDNT  191 (247)
T ss_pred             EEEEcCC
Confidence            9886543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=86.80  E-value=1.6  Score=43.04  Aligned_cols=113  Identities=16%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             CceEEEeec------------CC-ccChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCC-CCCC---CCcccEEEec
Q 022411            7 QSAVLALSE------------DK-ILPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQ-LPVE---SFSIDTVLSI   66 (297)
Q Consensus         7 ~~~VLll~~------------~~-~vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~-Lp~~---d~sfD~Vls~   66 (297)
                      |.+||=|..            |+ .||--|++..-+++|+++.+-.   ...+.|+++|+-. |...   ...||+|+.-
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            667776643            55 6778899999999999876432   3457899988743 2222   3489999985


Q ss_pred             cc------cCCCC----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           67 SS------SHELP----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        67 ~~------~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      -.      -..+.    -..++....++|+|||.+++......  -....-...+.+.+..+|..
T Consensus       298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~--~~~~~f~~~i~~a~~~~~~~  360 (393)
T COG1092         298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH--FSSDLFLEIIARAAAAAGRR  360 (393)
T ss_pred             CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc--cCHHHHHHHHHHHHHhcCCc
Confidence            42      11122    25788899999999999998765432  11222222444555555443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=86.36  E-value=1.7  Score=44.14  Aligned_cols=57  Identities=12%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC---------hHHHHHHHHhcccCCcEEEEEec
Q 022411           40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        40 ~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ..|+.++.+++..+  -|+++++|.|+.++.--|..         ...++.+++++|||||.+.+.+-
T Consensus       396 l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        396 ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            45777777776433  27789999999998633321         37899999999999999998754

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=86.21  E-value=9.1  Score=34.70  Aligned_cols=123  Identities=21%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             ccccCceEEEeec--CCccC-hHHHHH---------------HHHHHHHHHhhhcCCCeEEEEccCCCC---CCCCCccc
Q 022411            3 TGKMQSAVLALSE--DKILP-VSAVLN---------------AIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSID   61 (297)
Q Consensus         3 ~~~~~~~VLll~~--~~~vt-~~dlse---------------~m~~~A~~~~~~~~~~v~~~~~d~~~L---p~~d~sfD   61 (297)
                      .++.|.+||+|--  ||+++ +.|++.               +++..+.+     -.|+.-+.+|+..-   .+--+.+|
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhccccc
Confidence            3577899999954  55554 443332               33333332     35777777777531   11123478


Q ss_pred             EEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           62 TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        62 ~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      +|+.--+.. -..+-+......-||+||.+++..-..+  .-.++...+......|...||...+.....|.
T Consensus       148 viy~DVAQp-~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy  218 (231)
T COG1889         148 VIYQDVAQP-NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY  218 (231)
T ss_pred             EEEEecCCc-hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence            877654211 1135677788899999998876643211  11344455555667788899987776665554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=85.74  E-value=0.35  Score=43.27  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-C----CCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      .++..+..+++.+.|++..+..  ..+|+++.+++.. |+ +    +.+.||+|+.-..-..  -...+..+.+.|+|||
T Consensus        72 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~--y~~y~~~~~~ll~~gg  149 (205)
T PF01596_consen   72 KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRN--YLEYFEKALPLLRPGG  149 (205)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGG--HHHHHHHHHHHEEEEE
T ss_pred             eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccc--hhhHHHHHhhhccCCe
Confidence            3444455667788888766543  3579999998753 22 1    1357999998764221  2457888899999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      .+++-+..
T Consensus       150 vii~DN~l  157 (205)
T PF01596_consen  150 VIIADNVL  157 (205)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcccc
Confidence            99987643

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=85.29  E-value=3.8  Score=38.36  Aligned_cols=95  Identities=23%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCC-CCCCCCCcccEEEeccccC--C-----------CC---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLS-QLPVESFSIDTVLSISSSH--E-----------LP---------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~-~Lp~~d~sfD~Vls~~~~~--~-----------~~---------   73 (297)
                      .|+..|++..-++.|++++.... .++.++.+++- .++   ..||+|+++-.+.  .           -|         
T Consensus       136 ~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d  212 (280)
T COG2890         136 EVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD  212 (280)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence            55567889999999998876654 55666666543 332   3899999985311  0           00         


Q ss_pred             ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-cccc
Q 022411           74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDA  123 (297)
Q Consensus        74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v  123 (297)
                          ...++.++.+.|+|||.+++......        ...+...+...| |..+
T Consensus       213 Gl~~~~~i~~~a~~~l~~~g~l~le~g~~q--------~~~v~~~~~~~~~~~~v  259 (280)
T COG2890         213 GLEVYRRILGEAPDILKPGGVLILEIGLTQ--------GEAVKALFEDTGFFEIV  259 (280)
T ss_pred             HHHHHHHHHHhhHHHcCCCcEEEEEECCCc--------HHHHHHHHHhcCCceEE
Confidence                14677888999999888887654221        125667788889 4443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=85.22  E-value=0.96  Score=42.57  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHhhh----c-CCCeEEEEccCCCC-CCCCCcccEEEeccccC-----CCChHHHHHHHHhcccCCc
Q 022411           21 VSAVLNAIRDLGDEAVEQ----C-DPQIITQASSLSQL-PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~----~-~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~-----~~~~~~~L~ei~RvLKPGG   89 (297)
                      +-++-+++++.+++-...    . ++++..+.+|.... .-...+||+|+.-..-.     .+....+++.+.|.|+++|
T Consensus       105 ~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~G  184 (282)
T COG0421         105 MVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDG  184 (282)
T ss_pred             EEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence            446667888888875422    1 58899999888644 22233899999876432     1224789999999999999


Q ss_pred             EEEEE
Q 022411           90 TILIY   94 (297)
Q Consensus        90 ~l~i~   94 (297)
                      .++..
T Consensus       185 i~v~q  189 (282)
T COG0421         185 IFVAQ  189 (282)
T ss_pred             EEEEe
Confidence            99987

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.10  E-value=1.6  Score=38.20  Aligned_cols=63  Identities=17%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           55 VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        55 ~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      ....+||+|++.-.+..-. -..+..-|.+.|+|.|+.++..+..+      .+++.+..+....||...
T Consensus        99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~  162 (201)
T KOG3201|consen   99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC  162 (201)
T ss_pred             HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence            3457999999875322211 46789999999999999888877653      234467778888998754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=83.26  E-value=1.8  Score=40.60  Aligned_cols=72  Identities=13%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhh---hcCCCeEEEEccCCCCCCCCCcccEEEeccccC--CCChHHHHHHHHhcccCCcEEEEEe
Q 022411           24 VLNAIRDLGDEAVE---QCDPQIITQASSLSQLPVESFSIDTVLSISSSH--ELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        24 lse~m~~~A~~~~~---~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~--~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..++-.+.|++-+.   .....+.+..+++...+.+-..||+|+......  .-+...++.++.+.++||..+++..
T Consensus       154 ~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  154 IDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             SSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             CCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            34445555655333   236679999999987776667999988665222  2236889999999999999999884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=83.21  E-value=7.5  Score=37.01  Aligned_cols=105  Identities=11%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCe-EEEEccCCCC-CCC--CCcccEEEeccccCCCCh----HHHHHHHHhcccCCcEE
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQI-ITQASSLSQL-PVE--SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTI   91 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v-~~~~~d~~~L-p~~--d~sfD~Vls~~~~~~~~~----~~~L~ei~RvLKPGG~l   91 (297)
                      ..|+++.-++.+++.++.. ..++ .|.++|+-.. .+.  +-..++++.+-.+..|+.    ...++-+.++|.|||+|
T Consensus       166 LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~l  245 (311)
T PF12147_consen  166 LRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYL  245 (311)
T ss_pred             EEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEE
Confidence            5567777777777766543 4454 8888876432 122  234577766654555663    45678899999999999


Q ss_pred             EEEecC-CCCccchH----------------HHHHHHHHHHHHCCcccccc
Q 022411           92 LIYKKL-TSDKGDVD----------------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        92 ~i~~~~-~~~~g~~~----------------~~~~~l~~~L~laGFv~v~~  125 (297)
                      +..... ....+-+.                .+-.++......|||..++.
T Consensus       246 IyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q  296 (311)
T PF12147_consen  246 IYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQ  296 (311)
T ss_pred             EEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhh
Confidence            877521 11111011                11246777889999997653

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=82.48  E-value=1.5  Score=41.51  Aligned_cols=78  Identities=12%  Similarity=0.027  Sum_probs=52.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC-CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .|...|+++.|++.|+++++.. ..+++++++|+..+.. ..+.||+|+..-.-..+. ..++ ++...++|++.+++.-
T Consensus       197 ~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~-~~~~-~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        197 QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG-KELC-DYLSQMAPRFILYSSC  274 (315)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc-HHHH-HHHHHcCCCeEEEEEC
Confidence            4556688899999998876544 3479999999986542 245799999885422222 2333 4455578888888765


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      ..
T Consensus       275 ~p  276 (315)
T PRK03522        275 NA  276 (315)
T ss_pred             Cc
Confidence            43

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=82.12  E-value=1.7  Score=38.23  Aligned_cols=74  Identities=23%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  119 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG  119 (297)
                      ..|+.++.+.++. +....+||+|++.....   ...++.-..+.|++||++++.-...     ......+....+...|
T Consensus        97 L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~-----~~~El~~~~~~~~~~~  167 (184)
T PF02527_consen   97 LSNVEVINGRAEE-PEYRESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPD-----AEEELEEAKKAWKKLG  167 (184)
T ss_dssp             -SSEEEEES-HHH-TTTTT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS-------HHHHHTHHHHHHCCC
T ss_pred             CCCEEEEEeeecc-cccCCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCC-----hHHHHHHHHhHHHHhC
Confidence            4679999999988 55678999999987432   4678888999999999999876432     1122224445555555


Q ss_pred             ccc
Q 022411          120 FLD  122 (297)
Q Consensus       120 Fv~  122 (297)
                      ...
T Consensus       168 ~~~  170 (184)
T PF02527_consen  168 LKV  170 (184)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=81.37  E-value=2.7  Score=42.41  Aligned_cols=73  Identities=16%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-CCCCcccEEEeccc------c--------CCCC---------hHHH
Q 022411           23 AVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISS------S--------HELP---------GDQL   77 (297)
Q Consensus        23 dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~------~--------~~~~---------~~~~   77 (297)
                      |++..-++..+++++.. ..++.+...|...++ .-...||.|+.-..      +        .|.+         ...+
T Consensus       145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i  224 (470)
T PRK11933        145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL  224 (470)
T ss_pred             eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence            44445555555555554 356777777776552 23467999995431      1        1111         1567


Q ss_pred             HHHHHhcccCCcEEEEEe
Q 022411           78 LEEISRVLKPGGTILIYK   95 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~   95 (297)
                      |...++.|||||+|+.++
T Consensus       225 L~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        225 IESAFHALKPGGTLVYST  242 (470)
T ss_pred             HHHHHHHcCCCcEEEEEC
Confidence            888999999999997665

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=80.26  E-value=3.5  Score=39.64  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC----CCCcc-----chHHHHHHHHHHHHHCCcccccch
Q 022411           57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL----TSDKG-----DVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        57 d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~----~~~~g-----~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .++||+|+..+-.-.-+ --..+..|..+|||||.++=.-+.    ..+.+     .+.-+.+++.+....-||+.....
T Consensus       257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            34699998775222222 356889999999999998633221    11111     223345688888889999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
2ld4_A	176	Solution Structure Of The N-Terminal Domain Of Huma		4e-05
2yui_A	182	Solution Structure Of The N-Terminal Domain In Huma		1e-04

>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Anamorsin Length = 176

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 59  SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 114
           S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   
Sbjct: 63  SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 122
Query: 115 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGSS 153
           L L+G ++ + +Q + + P EV S                + GKKP +++GSS
Sbjct: 123 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175

>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human Cytokine-Induced Apoptosis Inhibitor Anamorsin Length = 182

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 59  SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 114
           S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  D     K  S L   
Sbjct: 66  SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 125
Query: 115 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGS 152
           L L+G ++ + +Q + + P EV S                + GKKP +++GS
Sbjct: 126 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGS 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	2e-14
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-08
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	9e-07
3f4k_A	257	Putative methyltransferase; structural genomics, P	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-05
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	4e-05
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	5e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-04
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	4e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	4e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-04
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-04
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	6e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	7e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	9e-04

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)

Query: 44  ITQASSLSQLPVESFSIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD- 100
           +     L Q   +  S D +LS  +  S  L   ++L EI+R+L+PGG + + + + +  
Sbjct: 48  VENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAV 107

Query: 101 -KGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAE--------------VVSFGVKGKK 145
                 K  S L   L L+G ++ + +Q + + P E              ++   + GKK
Sbjct: 108 DNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167

Query: 146 PTWKIGSS 153
           P +++GSS
Sbjct: 168 PNFEVGSS 175

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 30  DLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPG 88
           D+   A+++   +  +  +      +   S+D +L  +S H++     ++ E+ R+LK  
Sbjct: 46  DINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDD 105

Query: 89  GTILI--YKKLTSDKGD-VDKAISALEGKLLLAGF 120
           G ++I  ++K  +  G  +   +   +     + F
Sbjct: 106 GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNF 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 28  IRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLK 86
           +    ++  +     +    S  +++P+   ++D +    + HEL    + LEE+ RV K
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAK 134

Query: 87  PGGTILI--YKKLTSDKG-DVDKAISALEGKLLL--AGFLDAQ 124
           P   + I  +KK   DKG   ++  S  E  L+L  AG    +
Sbjct: 135 PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 33  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92
           D  V  CD         ++Q+P+E  S+D  +   S         LEE +RVLKPGG + 
Sbjct: 98  DPRVTVCD---------MAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLK 148

Query: 93  IYKKLTSDKGDVDKAISALEGKLLLAGF 120
           +  +++S   DV   + A+       GF
Sbjct: 149 VA-EVSSRFEDVRTFLRAVT----KLGF 171

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 30  DLGDEAVEQ---------CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEE 80
           DL  + +E          C  ++     S+  LP ++  +D + S  + + +  ++ + E
Sbjct: 76  DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNE 135

Query: 81  ISRVLKPGGTILIY 94
            S+ LK GG I + 
Sbjct: 136 WSKYLKKGGFIAVS 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 59/342 (17%), Positives = 102/342 (29%), Gaps = 115/342 (33%)

Query: 1   MD--TGKMQSAVLALSEDKILPVSAVLNA-IRDLGDEAV----------EQCDPQIITQA 47
           MD  TG+ Q          IL V    +A + +   + V          E+ D  II   
Sbjct: 7   MDFETGEHQ-----YQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSK 58

Query: 48  SSLSQLPVESFSIDTVLS---------ISSSHELPGDQLLEEISRVLK-PGGTILIY--- 94
            ++S          T+LS         +     +    L+  I    + P     +Y   
Sbjct: 59  DAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 95  -KKLTSD-----KGDV--DKAISALEGKLL-LAGFLDAQRIQL-------KSVVPAEVV- 137
             +L +D     K +V   +    L   LL L     A+ + +       K+ V  +V  
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCL 172

Query: 138 SFGVKGKKPT---W-KIGSSFAIKKAPKSLAKL--QVDDD----SDLIDEDTLLTEED-- 185
           S+ V+ K      W  + +  + +   + L KL  Q+D +    SD      L       
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 186 -----LKKPQLPS---VGDCEVGSTR--KA----CK-----------NCICGRAEAEEKV 220
                LK     +   V    V + +   A    CK           + +         +
Sbjct: 233 ELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 221 EKL--GLTMDQLKN-------------PQSACGMWTWRCFPL 247
           +     LT D++K+             P+           P 
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-----TNPR 328

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 34  EAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGT 90
               + + ++      + +LP +  S+  V S  +   +  +   + ++EI RVLKPGG 
Sbjct: 64  NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123

Query: 91  ILIY 94
             I 
Sbjct: 124 ACIN 127

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 40  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94
             ++     S+  LP  +  +D + S  + + +  ++ L E  + LK GG + + 
Sbjct: 95  QNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 94
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 96  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISR 83
           +     VE      P +     +++ L         +L+  S   +   +L   L  +  
Sbjct: 70  EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129

Query: 84  VLKPGGTILI 93
            ++ GG +L+
Sbjct: 130 AVEDGGGLLM 139

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 30  DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLK 86
           +      +Q    PQ+         L +   S+D V+SI + H     ++  +E+ R+++
Sbjct: 63  EPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 87  PGGTILIY 94
            G  +L+ 
Sbjct: 123 DGTIVLLT 130

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 108
              V + SIDT++S  + H L  D+    + + S++L  GG I+    + +D+   DK +
Sbjct: 100 SFEVPT-SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTV 158

Query: 109 SALEGK 114
            A + +
Sbjct: 159 EAAKQR 164

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 53  LPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
           +P+E    D ++S  S            EI R+LK GG   I 
Sbjct: 105 IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG 147

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP E+   + +++I+S        + L EI RVLK  G   I
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACI 151

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            LP++  S D  L +++   +   ++ L+E  R+LK GG +++
Sbjct: 95  NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 137

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 48  SSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94
             L    V+   ID + ++  +H    ++        L+  GTI I+
Sbjct: 102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW 148

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 52  QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAI 108
                  + D + S  +   L     ++L ++  + LKP GT+LI     ++K + D   
Sbjct: 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEF 172

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 33  DEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQL---LEEISRVLKPGG 89
            EA       +  +   L     +    D V        +P D+     E +   + PGG
Sbjct: 82  AEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG 140

Query: 90  TILI 93
            +  
Sbjct: 141 VVEF 144

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 40  DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIYKK 96
           + ++    +  S+   E    D V+S  S H L  +   +L +    +LK  G  +    
Sbjct: 91  NLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149

Query: 97  LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127
           +  +   ++     +  + +    L  + I 
Sbjct: 150 VHGETAFIENLNKTIWRQYVENSGLTEEEIA 180

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 33  DEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGT 90
            EA  +   P +  +  ++  + +E  + + VLS  + H +   D + +++   LK  G+
Sbjct: 81  TEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGS 140

Query: 91  ILI 93
            + 
Sbjct: 141 FIF 143

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 44  ITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
           I   ++     V   S+D V+S    +       L +EI RVL+ GG +   
Sbjct: 151 IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS 202

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILIY 94
            LP E  S D V ++ S H +P   + L E++RVL+PGGT+ I 
Sbjct: 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 35  AVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
             +     +    +++  LP E  S D +        L   ++ L+ + +VLKPGGTI +
Sbjct: 81  TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 21  VSAV---LNAIRDLGDEAVEQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGD- 75
           V A      +I ++      +    + T+   L+ L     +  D +LS      L    
Sbjct: 57  VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY--DFILSTVVLMFLEAKT 114

Query: 76  --QLLEEISRVLKPGGTILIYKKL 97
              L+  + R  KPGG  LI   +
Sbjct: 115 IPGLIANMQRCTKPGGYNLIVAAM 138

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLK 86
           D+   A++      PQ+    +S  +LP    S+D ++ I +          EE++RV+K
Sbjct: 116 DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA------PCKAEELARVVK 169

Query: 87  PGGTILI 93
           PGG ++ 
Sbjct: 170 PGGWVIT 176

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 30  DLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSS-HELPGDQL---LEEIS 82
           DL    ++      P+       LS   +     D ++S  +    L  D     L  I 
Sbjct: 75  DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIH 134

Query: 83  RVLKPGGTILI 93
           R L   G  +I
Sbjct: 135 RALGADGRAVI 145

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 52  QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
            +P+   S+  V+ +   H +P   ++L E  RVLKPGG +L 
Sbjct: 97  AIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.72
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.2
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.03
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.99
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.98
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.96
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.92
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.9
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.9
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.89
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.89
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	98.89
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.89
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.87
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.86
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.85
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.83
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.83
3ocj_A	305	Putative exported protein; structural genomics, PS	98.83
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.81
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.81
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.8
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.8
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.79
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.78
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.77
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.76
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.75
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.74
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.74
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.73
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.72
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.71
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.7
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.7
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.7
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.69
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.69
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.68
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.66
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.64
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.62
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.61
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.59
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.59
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.57
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.56
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.56
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.55
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.55
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.54
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.54
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.53
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.49
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.49
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.48
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.47
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.46
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.45
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.44
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.43
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.42
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.41
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.39
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.39
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.38
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.37
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.37
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.36
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.36
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.36
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.36
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.34
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.34
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.32
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.32
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.28
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.28
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.27
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.25
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.25
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.24
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.22
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.2
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.2
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.2
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.2
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.19
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.18
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.16
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.15
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.14
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.12
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.1
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.09
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.06
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.05
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.05
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.03
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.02
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.02
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.01
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.01
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.0
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.99
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.97
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.97
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.97
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.96
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.94
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.94
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.93
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.93
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.9
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.9
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.87
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.87
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.85
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.85
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.84
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.82
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.82
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.81
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.8
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.79
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.79
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.78
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.77
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.76
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.75
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.75
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.74
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.72
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.72
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.71
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.68
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.66
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.66
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.66
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.65
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.63
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.61
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.61
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.6
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.6
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.58
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.58
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.58
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.56
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.55
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.55
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.52
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.52
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.5
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.5
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.5
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.49
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.48
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.48
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.47
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.44
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.42
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.42
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.42
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.39
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.35
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.34
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.28
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.27
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.27
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.22
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.21
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.18
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.17
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.17
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.16
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.16
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.12
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.11
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.1
2o07_A	304	Spermidine synthase; structural genomics, structur	97.1
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.07
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.06
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.05
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.03
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.99
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.95
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.94
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.92
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.87
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.85
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.84
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.83
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.83
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.82
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.81
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.81
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.8
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.79
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.7
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.65
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.65
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.65
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.61
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.6
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.53
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.52
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.51
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.48
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	96.38
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.38
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.36
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.33
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.33
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.31
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.3
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.28
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.17
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.04
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.04
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.0
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.97
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.87
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	95.87
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	95.83
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.81
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	95.8
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.7
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.63
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.58
3k6r_A	278	Putative transferase PH0793; structural genomics,	95.57
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.4
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.33
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.29
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.84
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	94.83
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	94.64
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	94.46
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	94.41
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	94.35
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	94.01
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	93.12
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	92.79
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.72
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	91.97
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	91.72
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	90.71
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	90.63
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	90.29
3cvo_A	202	Methyltransferase-like protein of unknown functio;	90.14
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	89.53
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	89.11
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	88.2
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	87.99
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	86.95
3khk_A	544	Type I restriction-modification system methylation	86.65
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	86.3
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	86.21
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	85.82
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	84.7

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.72  E-value=4.3e-17  Score=137.87  Aligned_cols=146  Identities=22%  Similarity=0.319  Sum_probs=109.5

Q ss_pred             cccCceEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCC---CCCcccEEEeccccCCC-C-hHHHH
Q 022411            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV---ESFSIDTVLSISSSHEL-P-GDQLL   78 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~---~d~sfD~Vls~~~~~~~-~-~~~~L   78 (297)
                      ++.|++||.|+.+.+.  .|+++.|++.|+++...   ++.+++++++.+++   ++++||+|++..++||+ + ...++
T Consensus        10 ~~~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l   84 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSP--VEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEIL   84 (176)
T ss_dssp             CCTTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHH
T ss_pred             CCCCCEEEEecCCcee--eeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHH
Confidence            4678999999998865  99999999999876532   48999999999988   89999999999999998 5 78999


Q ss_pred             HHHHhcccCCcEEEEEecCCCCcc--chHHHHHHHHHHHHHCCcccccchhccccCc--------------cceeEeeee
Q 022411           79 EEISRVLKPGGTILIYKKLTSDKG--DVDKAISALEGKLLLAGFLDAQRIQLKSVVP--------------AEVVSFGVK  142 (297)
Q Consensus        79 ~ei~RvLKPGG~l~i~~~~~~~~g--~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~--------------~~~~~~~i~  142 (297)
                      ++++|+|||||+|++..+.....+  ......+++...|..+||+++.....-|..+              +.+..+.+.
T Consensus        85 ~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGfi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  164 (176)
T 2ld4_A           85 AEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQIT  164 (176)
T ss_dssp             HHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTCEEEEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEE
T ss_pred             HHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCCcEeecCcccCCCHHHHHHHHHHhcccCCceEEEEEe
Confidence            999999999999999765321111  0111234788899999995433221111111              122356789


Q ss_pred             ecCCCCCCCCcc
Q 022411          143 GKKPTWKIGSSF  154 (297)
Q Consensus       143 akKP~~~~gs~~  154 (297)
                      ++||+|++|||+
T Consensus       165 a~Kp~~~~gs~~  176 (176)
T 2ld4_A          165 GKKPNFEVGSSR  176 (176)
T ss_dssp             EECCCSSCCSCC
T ss_pred             ccCCcccccCCC
Confidence            999999999984

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.20  E-value=5.2e-11  Score=108.27  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=75.6

Q ss_pred             cccCceEEEeecCCc----------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKI----------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~----------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls   65 (297)
                      ++.|.+||-|--|+.                ++..|+++.|++.|+++++..  ..+++++++|+..+|++  .||+|++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~  145 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL  145 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--cccccee
Confidence            456778888755443                445688999999999887553  45799999999998865  5999999


Q ss_pred             ccccCCCCh---HHHHHHHHhcccCCcEEEEEecCC
Q 022411           66 ISSSHELPG---DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        66 ~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++++|++++   ..+|++++|+|||||+|++.+...
T Consensus       146 ~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          146 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            999999983   468999999999999999988653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.03  E-value=3.1e-10  Score=101.14  Aligned_cols=119  Identities=20%  Similarity=0.235  Sum_probs=87.9

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-|--|+            .++..|+++.|++.|+++.... ..++.++.+|++.+|+++++||+|++..++||+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~  116 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhHhc
Confidence            456777775544            2345577899999998876543 457999999999999999999999999999999


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHH-----------------HHHHHHHHHHHCCccccc
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK-----------------AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~-----------------~~~~l~~~L~laGFv~v~  124 (297)
                      + +..++.+++|+|||||+|++.++..........                 ....+...|..+||..+.
T Consensus       117 ~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  186 (260)
T 1vl5_A          117 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE  186 (260)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEE
Confidence            8 789999999999999999998654221110000                 123566677888887654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.99  E-value=8.5e-10  Score=95.34  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=91.5

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ++..|+++.|++.++++.... ..++.+..+++..+++++++||+|++...+++++ ...++++++|+|||||++++.++
T Consensus        65 v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A           65 VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            445567788999998876543 3579999999999999999999999999999887 78999999999999999999986


Q ss_pred             CCCCc--cc-hH--HHHHHHHHHHHHCCcccccchhccccCccceeEeeeeecCCC
Q 022411           97 LTSDK--GD-VD--KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPT  147 (297)
Q Consensus        97 ~~~~~--g~-~~--~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~akKP~  147 (297)
                      .....  +. ..  ...+++...+..+||..+......+.      .+.+.++||.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~------~~~~~~~k~~  194 (219)
T 3dh0_A          145 KKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY------CFGVYAMIVK  194 (219)
T ss_dssp             CSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT------EEEEEEECC-
T ss_pred             cccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc------eEEEEEEecc
Confidence            53321  11 00  12357888899999998765442221      3455666653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.98  E-value=1.4e-09  Score=93.12  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|+++.|++.|++++...  ..++.++.+++..+|+++++||+|++..+++|++ ...++++++|+|||||++++.+
T Consensus        69 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A           69 IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            345577788999998876543  3579999999999999999999999999999887 7899999999999999999986


Q ss_pred             cCCCCc-------------cch---------HHHHHHHHHHHHHCCcccccch
Q 022411           96 KLTSDK-------------GDV---------DKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        96 ~~~~~~-------------g~~---------~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ......             ..+         ....+.+...|..+||..++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  201 (219)
T 3dlc_A          149 GFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII  201 (219)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred             ccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence            542210             000         0123567788999999887654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.96  E-value=1.3e-09  Score=95.21  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH--HHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD--QLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~--~~L~ei~RvLKPGG~l~i~   94 (297)
                      .++..|+++.|++.|+++..... ++.++.+++..++++ ++||+|++..++++++ ..  .++++++|+|||||+|++.
T Consensus        70 ~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  147 (234)
T 3dtn_A           70 TFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA  147 (234)
T ss_dssp             EEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            44456778899999987754433 899999999999988 8999999999999998 33  5899999999999999999


Q ss_pred             ecCC
Q 022411           95 KKLT   98 (297)
Q Consensus        95 ~~~~   98 (297)
                      ++..
T Consensus       148 ~~~~  151 (234)
T 3dtn_A          148 DLVH  151 (234)
T ss_dssp             EECB
T ss_pred             EecC
Confidence            8653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.92  E-value=6.1e-10  Score=101.08  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=65.3

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      |+..|+++.|++.|+     ..+++.+++++++++|+++++||+|++..++||++...+++|++|+|||||+|.+.....
T Consensus        64 v~gvD~s~~ml~~a~-----~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           64 VHAVDPGEAQIRQAL-----RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             EEEEESCHHHHHTCC-----CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEEeCcHHhhhhhh-----hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            344577888887653     256899999999999999999999999999999998889999999999999999887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.90  E-value=1.7e-09  Score=95.65  Aligned_cols=120  Identities=13%  Similarity=0.096  Sum_probs=89.0

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-|--|+             .++..|+++.|++.|++++...  ..++.++.+++..+++ +++||+|++..++
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~  113 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGAT  113 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCCh
Confidence            3456777775443             3445577889999998876543  3579999999999988 8899999999988


Q ss_pred             CCCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchH--------------HHHHHHHHHHHHCCcccccc
Q 022411           70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVD--------------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~--------------~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++++ ...++++++|+|||||+|++.++.........              .....+...|..+||..+..
T Consensus       114 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  184 (256)
T 1nkv_A          114 WIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM  184 (256)
T ss_dssp             GGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred             HhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence            8887 78999999999999999999875321110000              01246778889999987653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.90  E-value=3.7e-09  Score=93.45  Aligned_cols=121  Identities=16%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-|--|+             .++..|+++.|++.|+++....  ..++.++.+|+..+|+++++||+|++..++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI  124 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence            4456777775543             4445577888999998876543  345999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecC--CC-CccchHH----------HHHHHHHHHHHCCcccccc
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKL--TS-DKGDVDK----------AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~--~~-~~g~~~~----------~~~~l~~~L~laGFv~v~~  125 (297)
                      +++....+++++.|+|||||++++.++.  .. .......          ....+...|..+||..+..
T Consensus       125 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (257)
T 3f4k_A          125 YNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH  193 (257)
T ss_dssp             CCCCHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred             hhcCHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            9888888999999999999999999753  11 1111111          1246677889999988764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.89  E-value=1.3e-09  Score=96.51  Aligned_cols=121  Identities=20%  Similarity=0.251  Sum_probs=91.4

Q ss_pred             ccCceEEEeecC-------------CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSED-------------KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~-------------~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-|--|             ..++..|+++.|++.|+++.... .++.++.+|+..+|+++++||+|++..+++|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  132 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILA  132 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEEEEEEESCGGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEEEEeHHHHHHh
Confidence            345677776544             34455677889999988765443 7899999999999999999999999999999


Q ss_pred             C--C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHH--------------HHHHHHHHHHHCCcccccch
Q 022411           72 L--P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--------------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        72 ~--~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~--------------~~~~l~~~L~laGFv~v~~~  126 (297)
                      +  . ...++++++|+|||||++++.++.......+..              ..+.+...+..+||..+...
T Consensus       133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  204 (266)
T 3ujc_A          133 LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK  204 (266)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence            9  4 688999999999999999999865332111110              13467788899999876543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.89  E-value=4.9e-09  Score=92.51  Aligned_cols=121  Identities=14%  Similarity=0.196  Sum_probs=89.6

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-+--|+            .++..|+++.|++.++++.... ..++.++.++++.+|+++++||+|++...++|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~   99 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHH   99 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhh
Confidence            3456777775544            3345577889999988876543 45799999999999999999999999998988


Q ss_pred             CC-hHHHHHHHHhcccCCcEEEEEecCCCCccchH-----------------HHHHHHHHHHHHCCcccccc
Q 022411           72 LP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVD-----------------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~-----------------~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++ ...++.+++|+|||||++++.+..........                 ....++...|..+||..+..
T Consensus       100 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~  171 (239)
T 1xxl_A          100 FSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI  171 (239)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence            87 78999999999999999999876432111110                 01245667778888886543

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.6e-10  Score=93.36  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=73.7

Q ss_pred             CCccccCceEEEeecCCccChHHHHHHHHHHHHHH-hhhcCCCeEEE-EccCCCCCCCCCcccEEEeccccC-C-CC-hH
Q 022411            1 MDTGKMQSAVLALSEDKILPVSAVLNAIRDLGDEA-VEQCDPQIITQ-ASSLSQLPVESFSIDTVLSISSSH-E-LP-GD   75 (297)
Q Consensus         1 m~~~~~~~~VLll~~~~~vt~~dlse~m~~~A~~~-~~~~~~~v~~~-~~d~~~Lp~~d~sfD~Vls~~~~~-~-~~-~~   75 (297)
                      |+..+   ++|||.||+++|.++.++.++....+. .......+..+ .....+||  +++||.|+.....- . .. +.
T Consensus         4 ~~~~~---~~LLL~~Psv~t~pe~le~~k~~~~~~~~~~~d~qmlDRLa~G~VsLp--~stYD~V~~lt~~~~~~~~l~r   78 (136)
T 2km1_A            4 MSQYK---TGLLLIHPAVTTTPELVENTKAQAASKKVKFVDQFLINKLNDGSITLE--NAKYETVHYLTPEAQTDIKFPK   78 (136)
T ss_dssp             ---CE---EEEEEECHHHHTSHHHHHHHHHHHHHTTEEEEEEEEHHHHHHTCCCCC--SSSCCSEEEECCCSSCSCCCCH
T ss_pred             cccCC---CeEEecCCcccCCHHHHHHHHHhhhccccchhhHHHHHHHhcCcccCC--cccccEEEEecCCccchhhcCH
Confidence            55555   899999999999999999999876652 00111122222 23445554  99999999887432 2 22 58


Q ss_pred             HHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      .+++.|++.|||||+|.-          +..   ....++.++||+.++
T Consensus        79 ~li~~l~~aLkpgG~L~g----------l~~---~~~~EailaGfvv~~  114 (136)
T 2km1_A           79 KLISVLADSLKPNGSLIG----------LSD---IYKVDALINGFEIIN  114 (136)
T ss_dssp             HHHHHHHTTCCTTCCEEC----------CCH---HHHHHHHHHTEEEEC
T ss_pred             HHHHHHHHHhCCCCEEEe----------cCc---chhhHHHhhccEecc
Confidence            999999999999999984          111   456789999999655

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.89  E-value=5.9e-09  Score=93.27  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-|--|+             .++..|+++.|++.|+++....  ..++.++.+|+..+|+++++||+|++...+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI  124 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence            4566777775543             4456688899999998876544  356999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCCC---CccchHH----------HHHHHHHHHHHCCcccccc
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLTS---DKGDVDK----------AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~---~~g~~~~----------~~~~l~~~L~laGFv~v~~  125 (297)
                      +++....+++++.|+|||||++++.+..-.   .......          ....+...+..+||..+..
T Consensus       125 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  193 (267)
T 3kkz_A          125 YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT  193 (267)
T ss_dssp             GGTCHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred             eecCHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            888888899999999999999999875411   1111111          1246777889999998754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.87  E-value=1.7e-09  Score=95.71  Aligned_cols=77  Identities=13%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.|+++..  ..++.++.+++..+|+++++||+|++..++++++ ...++++++|+|||||+|++..+
T Consensus        69 ~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A           69 KVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             EEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            45566788899999887654  5689999999999999999999999999999987 78999999999999999999743

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.86  E-value=2.4e-09  Score=97.10  Aligned_cols=121  Identities=19%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-+--|+             .++..|+++.|++.|+++....  ..++.++.+++..+|+++++||+|++..++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            4566777775433             3445577788999998776443  357999999999999999999999999999


Q ss_pred             CCCC-hHHHHHHHHhcccCCcEEEEEecCCCCc---cchHH-----------HHHHHHHHHHHCCcccccc
Q 022411           70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSDK---GDVDK-----------AISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~~~~-----------~~~~l~~~L~laGFv~v~~  125 (297)
                      +|++ ...++++++|+|||||+|++.++.....   ..+..           ....+...|..+||..+..
T Consensus       161 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  231 (297)
T 2o57_A          161 LHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  231 (297)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            9888 7899999999999999999997643211   11111           1345677889999987654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.85  E-value=5.9e-09  Score=90.03  Aligned_cols=103  Identities=19%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHH--HHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQ--LLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~--~L~ei~RvLKPGG~l~i~   94 (297)
                      .++..|+++.|++.++++..   .++.++.+++..+|++ ++||+|++..++++++ ...  +++++.|+|||||++++.
T Consensus        69 ~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A           69 TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            34566778889998887643   5799999999999988 9999999999999998 544  999999999999999999


Q ss_pred             ecCCCCccchH---------------H--------HHHHHHHHHHHCCccccc
Q 022411           95 KKLTSDKGDVD---------------K--------AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        95 ~~~~~~~g~~~---------------~--------~~~~l~~~L~laGFv~v~  124 (297)
                      ++.........               .        ..+.+...|..+||..+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~  197 (220)
T 3hnr_A          145 DTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF  197 (220)
T ss_dssp             EECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred             eccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence            86532211110               0        124677788889996544

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.83  E-value=4.4e-09  Score=100.06  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=92.1

Q ss_pred             ccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc---------CCCeEEEEccCCCC------C
Q 022411            5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC---------DPQIITQASSLSQL------P   54 (297)
Q Consensus         5 ~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~---------~~~v~~~~~d~~~L------p   54 (297)
                      ..|.+||-|--|+.               ++..|+++.|++.|+++++..         ..++.++.+++..+      |
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            45667887755443               345567788999998875432         26899999999988      9


Q ss_pred             CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCc-c-chH-------------HHHHHHHHHHHHC
Q 022411           55 VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDK-G-DVD-------------KAISALEGKLLLA  118 (297)
Q Consensus        55 ~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~-g-~~~-------------~~~~~l~~~L~la  118 (297)
                      +++++||+|+++.++++++ ...++++++|+|||||+|++.++..... . ...             ...+++...|..+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a  241 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA  241 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence            9999999999999999988 7899999999999999999987543211 0 000             0125788889999


Q ss_pred             Ccccccch
Q 022411          119 GFLDAQRI  126 (297)
Q Consensus       119 GFv~v~~~  126 (297)
                      ||..+...
T Consensus       242 GF~~v~~~  249 (383)
T 4fsd_A          242 GFRDVRLV  249 (383)
T ss_dssp             TCCCEEEE
T ss_pred             CCceEEEE
Confidence            99876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.83  E-value=3.4e-09  Score=94.68  Aligned_cols=120  Identities=21%  Similarity=0.285  Sum_probs=89.5

Q ss_pred             cCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .+.+||-+--|+             .++..|+++.|++.++++....  ..++.++.+++..+|+++++||+|++...++
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  140 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLH  140 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhh
Confidence            456777775443             3344566788999988876543  3479999999999999999999999999999


Q ss_pred             CCC-hHHHHHHHHhcccCCcEEEEEecCCCC-ccch-----H-----------HHHHHHHHHHHHCCcccccc
Q 022411           71 ELP-GDQLLEEISRVLKPGGTILIYKKLTSD-KGDV-----D-----------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~-----~-----------~~~~~l~~~L~laGFv~v~~  125 (297)
                      |++ ...+++++.|+|||||++++.++.... ....     .           ...+.+...+..+||..+..
T Consensus       141 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  213 (273)
T 3bus_A          141 HMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTST  213 (273)
T ss_dssp             TSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             hCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence            997 789999999999999999998865321 1110     0           01246677788899987654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.83  E-value=4.4e-09  Score=96.38  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH---HHHHHHHhcccCCcEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD---QLLEEISRVLKPGGTI   91 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~---~~L~ei~RvLKPGG~l   91 (297)
                      .++..|+++.|++.|+++....  ..++.++.+|+..+|++ ++||+|+++..++|++ +.   .++++++|+|||||+|
T Consensus       145 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  223 (305)
T 3ocj_A          145 QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGAL  223 (305)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEE
Confidence            4456688899999999876544  23599999999999988 9999999999899886 43   3799999999999999


Q ss_pred             EEEecCCCCc----c-----chH----------------------HHHHHHHHHHHHCCcccccch
Q 022411           92 LIYKKLTSDK----G-----DVD----------------------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        92 ~i~~~~~~~~----g-----~~~----------------------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++.++.....    .     ...                      ...+++...|..+||..+...
T Consensus       224 ~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~  289 (305)
T 3ocj_A          224 VTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFE  289 (305)
T ss_dssp             EEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEE
Confidence            9988543210    0     000                      124577888999999987654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.81  E-value=4.7e-09  Score=87.19  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=90.7

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~   73 (297)
                      .+.+||-+--|+            .++..|+++.|++.++++    ..++.+..++   +++++++||+|++...+++++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~   89 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK----FDSVITLSDP---KEIPDNSVDFILFANSFHDMD   89 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH----CTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence            345666664443            234556778888888765    5689999888   788899999999999999987


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecCCCCc--cch-H--HHHHHHHHHHHHCCcccccchhccccCccceeEeeeeecCCC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKLTSDK--GDV-D--KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPT  147 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~-~--~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~akKP~  147 (297)
                       ...+++++.|+|||||++++.++.....  +.. .  ...+++...+.  ||..++.....+.      .+.+.++++.
T Consensus        90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~------~~~l~~~~~~  161 (170)
T 3i9f_A           90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPY------HFGLVLKRKT  161 (170)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTT------EEEEEEEECC
T ss_pred             CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCc------eEEEEEecCC
Confidence             7899999999999999999998754321  111 0  11235665565  9998776543321      3455555554


Q ss_pred             CCCCC
Q 022411          148 WKIGS  152 (297)
Q Consensus       148 ~~~gs  152 (297)
                      -..++
T Consensus       162 ~~~~~  166 (170)
T 3i9f_A          162 SEGHH  166 (170)
T ss_dssp             CCSCC
T ss_pred             CCccc
Confidence            44443

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.81  E-value=3.5e-09  Score=90.52  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .++..|+++.|++.++++    ..++.++.+++..+|+++++||+|++..++++++   ...+++++.|+|||||++++.
T Consensus        65 ~v~gvD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~  140 (203)
T 3h2b_A           65 QIEGLEPATRLVELARQT----HPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMS  140 (203)
T ss_dssp             CEEEECCCHHHHHHHHHH----CTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEeCCHHHHHHHHHh----CCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            455667788899988765    4579999999999999999999999999998884   578999999999999999999


Q ss_pred             ecCCCCccch--------HHHHHHHHHHHHHCCcccccchh
Q 022411           95 KKLTSDKGDV--------DKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        95 ~~~~~~~g~~--------~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .+.......+        ....+.+...|..+||..+....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          141 FFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             EECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            8664321111        01235788889999999876544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.80  E-value=4.6e-09  Score=91.87  Aligned_cols=120  Identities=23%  Similarity=0.183  Sum_probs=91.4

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-|--|+            .++..|+++.|++.++++.  ...++.++.+++..+|+++++||+|++...++|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            3456777775544            3456677888999887653  3468999999999999999999999999999998


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecCCCCccc---hH-----------HHHHHHHHHHHHCCcccccch
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKLTSDKGD---VD-----------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~---~~-----------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      + +..++++++|+|||||++++..+.......   ..           .....+...+..+||..++..
T Consensus       130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            8 789999999999999999999865432110   00           112467888999999987643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.80  E-value=5.8e-09  Score=92.23  Aligned_cols=90  Identities=21%  Similarity=0.264  Sum_probs=75.2

Q ss_pred             ccCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-+--|+.            ++..|+++.|++.++++......++.++.+++..+|+++++||+|++...+||+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence            45667887755443            334577789999998876444678999999999999999999999999999999


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEE
Q 022411           73 P-GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      + ...++.+++|+|||||++++.
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          118 PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCcEEEEE
Confidence            7 788999999999999999887

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.79  E-value=8e-09  Score=89.96  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=87.3

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~   73 (297)
                      .+.+||-|--|+            .++..|+++.|++.|+++...   ++.++.++++.+ +++++||+|++..+++|++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~  117 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-QLPRRYDNIVLTHVLEHID  117 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence            345666664433            345668889999999876433   799999999988 5788999999999999997


Q ss_pred             -hHHHHHHHH-hcccCCcEEEEEecCCCCccc--------------h-----H------HHHHHHHHHHHHCCcccccc
Q 022411           74 -GDQLLEEIS-RVLKPGGTILIYKKLTSDKGD--------------V-----D------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        74 -~~~~L~ei~-RvLKPGG~l~i~~~~~~~~g~--------------~-----~------~~~~~l~~~L~laGFv~v~~  125 (297)
                       +..++++++ |+|||||+|++..+.......              +     .      ...+++...|..+||..++.
T Consensus       118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  196 (250)
T 2p7i_A          118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR  196 (250)
T ss_dssp             SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence             789999999 999999999999865431100              0     0      02346778889999987654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.78  E-value=7.2e-09  Score=95.25  Aligned_cols=122  Identities=11%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-+--|+             .++..|+++.|++.|++++...  ..++.++.+|+..+|+++++||+|++...+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            4466777765443             3445577889999998876554  357999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCCCCcc-ch----H---H-------HHHHHHHHHHHCCcccccch
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKG-DV----D---K-------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g-~~----~---~-------~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++++...+++++.|+|||||+|++.++...... ..    .   .       ..+++...+..+||..+...
T Consensus       196 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~  267 (312)
T 3vc1_A          196 MYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV  267 (312)
T ss_dssp             GGSCHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred             hhCCHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            988888999999999999999999876432211 10    0   0       13467778889999876543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.77  E-value=1.1e-08  Score=88.69  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcC------CCeEEEEccCCCCCCCCCcccEEEec
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCD------PQIITQASSLSQLPVESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~------~~v~~~~~d~~~Lp~~d~sfD~Vls~   66 (297)
                      +.+.+||-+--|+            .++..|+++.|++.++++.....      .++.+..+++..+++++++||+|++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            4556777775543            34455778899999988664432      26899999999999999999999999


Q ss_pred             cccCCCC-hH---HHHHHHHhcccCCcEEEEEecCC
Q 022411           67 SSSHELP-GD---QLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        67 ~~~~~~~-~~---~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ..+++++ +.   .+++++.|+|||||++++.++..
T Consensus       109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            9999887 55   89999999999999999987654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.76  E-value=1.1e-08  Score=92.77  Aligned_cols=80  Identities=9%  Similarity=0.080  Sum_probs=69.5

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..++..|+++.|++.|+++......++.++++|+..+|++ ++||+|++...+++++ ...++++++|+|||||+|++.+
T Consensus        48 ~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           48 SKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            3455668889999999987766556899999999999985 6999999999999988 7899999999999999999988


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      +.
T Consensus       127 ~~  128 (284)
T 3gu3_A          127 PH  128 (284)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.75  E-value=1.2e-08  Score=91.38  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=68.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++..|+++.|++.++++.... ..++.++.+++..+|+++++||+|++...+++++ +..+++++.|+|||||.+++.+
T Consensus        63 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A           63 EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            3445577888999988876544 3579999999999999999999999999999988 7899999999999999999987


Q ss_pred             cC
Q 022411           96 KL   97 (297)
Q Consensus        96 ~~   97 (297)
                      +.
T Consensus       143 ~~  144 (276)
T 3mgg_A          143 GD  144 (276)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.74  E-value=3.1e-09  Score=93.68  Aligned_cols=120  Identities=9%  Similarity=0.056  Sum_probs=89.1

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-|--|+.             ++..|+++.|++.|+++.... .++.++.+++..+|+++++||+|++...++|+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence            3556777654432             445567888999988765443 67999999999999999999999999999998


Q ss_pred             C---hHHHHHHHHhcccCCcEEEEEecCCCCc--------cchHHHHHHHHHHHHHCCcccccch
Q 022411           73 P---GDQLLEEISRVLKPGGTILIYKKLTSDK--------GDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        73 ~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~--------g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      +   ...++++++|+|||||+|++.++.....        .......+.+...|..+||..++..
T Consensus       172 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  236 (254)
T 1xtp_A          172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence            5   4789999999999999999988532110        0001123477888999999987643

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.74  E-value=9.5e-09  Score=89.59  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCC-
Q 022411            7 QSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHEL-   72 (297)
Q Consensus         7 ~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~-   72 (297)
                      +.+||-|--|+            .++..|+++.|++.++++......++.++.+++..++++ ++||+|++.. +++|+ 
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~  116 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYII  116 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCC
T ss_pred             CCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccccC
Confidence            45677775443            334557788999999887655444899999999999887 8999999998 88888 


Q ss_pred             --C-hHHHHHHHHhcccCCcEEEEEec
Q 022411           73 --P-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        73 --~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                        . ...++++++|+|||||+|++..+
T Consensus       117 ~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          117 DSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence              3 57899999999999999998543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=1.2e-08  Score=91.96  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=72.5

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~   73 (297)
                      .+.+||-|--|+            .++..|+++.|++.++++.    .++.++.+++..+|+ +++||+|++..+++|++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~  131 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK  131 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence            455777775443            3445577889999887653    678999999999997 57999999999999987


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecCCC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKLTS   99 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~~~   99 (297)
                       +..++++++|+|||||+|++..+...
T Consensus       132 d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          132 EPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence             78999999999999999999877643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.72  E-value=6e-09  Score=91.02  Aligned_cols=77  Identities=17%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.++++...  .++.++.+++..+++++++||+|++..++++++ ...++++++|+|||||++++..+
T Consensus        68 ~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A           68 YVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            455667788999988875433  479999999999999899999999999999887 78999999999999999998764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.71  E-value=5.2e-09  Score=90.73  Aligned_cols=79  Identities=9%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             CCccChHHHHHHHHHHHHHHhhh-------------cCCCeEEEEccCCCCCCCC-CcccEEEeccccCCCCh---HHHH
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQ-------------CDPQIITQASSLSQLPVES-FSIDTVLSISSSHELPG---DQLL   78 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~-------------~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~~---~~~L   78 (297)
                      +..|+..|+++.|++.|+++...             ...++.++++|+.++|+++ ++||+|++...+++++.   ..++
T Consensus        44 g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l  123 (203)
T 1pjz_A           44 GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYV  123 (203)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHH
Confidence            34456678899999999876532             2468999999999999876 89999999888888872   4689


Q ss_pred             HHHHhcccCCcEEEEE
Q 022411           79 EEISRVLKPGGTILIY   94 (297)
Q Consensus        79 ~ei~RvLKPGG~l~i~   94 (297)
                      ++++|+|||||++++.
T Consensus       124 ~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A          124 QHLEALMPQACSGLLI  139 (203)
T ss_dssp             HHHHHHSCSEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEE
Confidence            9999999999994444

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.70  E-value=7.6e-09  Score=91.16  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=83.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.|+++.... ..++.++.+++..+++++++||+|++...+++++ .  ..+++++.|+|||||+|++
T Consensus       104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          104 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            3446678899999998876543 4568899999999999888999999999999988 3  3799999999999999999


Q ss_pred             EecCCCC-------ccchHHHHHHHHHHHHHCCcccccch
Q 022411           94 YKKLTSD-------KGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        94 ~~~~~~~-------~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .++....       ........+++...+..+||..+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          184 KDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             EEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             EEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            8753221       00111123478888999999877643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.70  E-value=1.2e-08  Score=89.88  Aligned_cols=116  Identities=15%  Similarity=0.007  Sum_probs=85.5

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC--CCCCCcccEEEeccccC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSSH   70 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~   70 (297)
                      +.+.+||-|--|+            .++..|+++.|++.++++       +.++.+++..+  |+++++||+|++..+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~  112 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHFVE  112 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESCGG
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCchh
Confidence            4566787775544            344556677777776653       78888888775  88899999999999999


Q ss_pred             CCC-h--HHHHHHHHhcccCCcEEEEEecCCCCccchH-----------HHHHHHHHHHHHCCcccccchh
Q 022411           71 ELP-G--DQLLEEISRVLKPGGTILIYKKLTSDKGDVD-----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        71 ~~~-~--~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~-----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      |++ +  ..+++++.|+|||||++++..+.......+.           ...+.+...+..+||..+....
T Consensus       113 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  183 (240)
T 3dli_A          113 HLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF  183 (240)
T ss_dssp             GSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             hCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence            987 4  7899999999999999999987654311100           0125777888999999776543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.70  E-value=1.4e-08  Score=91.40  Aligned_cols=121  Identities=17%  Similarity=0.185  Sum_probs=82.6

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhcC------------------------------CC
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQCD------------------------------PQ   42 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~~------------------------------~~   42 (297)
                      .|.+||-|--|+.             |+..|+++.|++.|+++++...                              .+
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            4556776655442             4456888999999887543211                              12


Q ss_pred             eE-EEEccCCC-CCCC---CCcccEEEeccccCCCC-----hHHHHHHHHhcccCCcEEEEEecCCCCc---cc--h---
Q 022411           43 II-TQASSLSQ-LPVE---SFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKLTSDK---GD--V---  104 (297)
Q Consensus        43 v~-~~~~d~~~-Lp~~---d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~--~---  104 (297)
                      +. ++.+|+.. .|++   ..+||+|++++.+|++.     ...++++++|+|||||+|++........   +.  +   
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~  214 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCV  214 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECC
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeecc
Confidence            33 78889887 3543   67999999999988752     3589999999999999999997543211   10  0   


Q ss_pred             HHHHHHHHHHHHHCCcccccch
Q 022411          105 DKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       105 ~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .-..+.+...|..+||..++..
T Consensus       215 ~~~~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          215 ALEKGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCHHHHHHHHHHCCCEEEEEe
Confidence            0123478888999999876543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.69  E-value=8.4e-09  Score=93.96  Aligned_cols=103  Identities=17%  Similarity=-0.008  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeE--EEEccCCCCC------CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCC
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQII--TQASSLSQLP------VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPG   88 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~--~~~~d~~~Lp------~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPG   88 (297)
                      +..|.+++|++.|+++++..  ..++.  +..++++.++      +++++||+|++..++||++ +..+|++++|+||||
T Consensus        86 ~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  165 (292)
T 2aot_A           86 EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  165 (292)
T ss_dssp             EEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC
Confidence            55677889999998876542  23444  4455665543      5689999999999999998 889999999999999


Q ss_pred             cEEEEEecCCCCccchHH------------------HHHHHHHHHHHCCccccc
Q 022411           89 GTILIYKKLTSDKGDVDK------------------AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        89 G~l~i~~~~~~~~g~~~~------------------~~~~l~~~L~laGFv~v~  124 (297)
                      |+|++.......  .+..                  ...++...|..+||..+.
T Consensus       166 G~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  217 (292)
T 2aot_A          166 AKMLIIVVSGSS--GWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC  217 (292)
T ss_dssp             EEEEEEEECTTS--HHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEE
T ss_pred             cEEEEEEecCCc--cHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCCCceEE
Confidence            999988654321  1110                  123566778888886543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.69  E-value=1.1e-08  Score=92.26  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCC-CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.|+++.....  .++.++.+++..++ +.+++||+|++...++|++ +..+++++.|+|||||++++
T Consensus        92 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  171 (285)
T 4htf_A           92 QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSL  171 (285)
T ss_dssp             EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEE
Confidence            44566788999999988765432  57999999999988 8889999999999999988 78999999999999999999


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      ..+.
T Consensus       172 ~~~~  175 (285)
T 4htf_A          172 MFYN  175 (285)
T ss_dssp             EEEB
T ss_pred             EEeC
Confidence            8753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.68  E-value=2.1e-08  Score=86.14  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             cCceEEEeecCC----------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h
Q 022411            6 MQSAVLALSEDK----------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G   74 (297)
Q Consensus         6 ~~~~VLll~~~~----------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~   74 (297)
                      .+.+||-+--|+          .++..|+++.|++.++++.    .++.++.+++..+|+++++||+|++..+++|++ +
T Consensus        36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  111 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV  111 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred             CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence            345666664433          5567788899999988764    678999999999999999999999999999987 7


Q ss_pred             HHHHHHHHhcccCCcEEEEEecCC
Q 022411           75 DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        75 ~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ..+++++.|+|||||++++..+..
T Consensus       112 ~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          112 ERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCC
Confidence            899999999999999999998764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.66  E-value=2.7e-08  Score=85.53  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP   73 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~   73 (297)
                      .+.+||-|--|+            .++..|+++.|++.++++.     ++.+..+++..++ .+++||+|++..++++++
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  116 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP  116 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSCEEEEEECSCGGGSC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCcEEEEEecCchhhcC
Confidence            455666664433            3445577888999888764     5677889999998 789999999999999886


Q ss_pred             ---hHHHHHHHHhcccCCcEEEEEecCCCCccc--h-----HHHHHHHHHHHHHCC-cccccchh
Q 022411           74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGD--V-----DKAISALEGKLLLAG-FLDAQRIQ  127 (297)
Q Consensus        74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~--~-----~~~~~~l~~~L~laG-Fv~v~~~~  127 (297)
                         ...++++++|+|||||+|++..+.......  .     ....+.+...+..+| |..+....
T Consensus       117 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          117 RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence               368999999999999999998765321100  0     012357888899999 99876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.64  E-value=1.7e-08  Score=86.31  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..|+++.|++.++++......++.++.+++..+|+++++||+|++..+++|++   ...++++++|+|||||++++.++.
T Consensus        51 ~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           51 GIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             EEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            44677899999988766555789999999999999999999999998888884   578999999999999999998764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.62  E-value=3.8e-08  Score=84.57  Aligned_cols=104  Identities=17%  Similarity=0.066  Sum_probs=76.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC---CCCCC-cccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL---PVESF-SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L---p~~d~-sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.++++     .++.+..+++..+   ++... +||+|++...+++-....++++++|+|||||+|++
T Consensus        76 ~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~  150 (227)
T 3e8s_A           76 EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVI  150 (227)
T ss_dssp             EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEE
Confidence            455667888999988765     4677777777766   55555 49999999988833378999999999999999999


Q ss_pred             EecCCCCccc------------------------hHHHHHHHHHHHHHCCcccccch
Q 022411           94 YKKLTSDKGD------------------------VDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        94 ~~~~~~~~g~------------------------~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .++.......                        .....+++...|..+||..++..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  207 (227)
T 3e8s_A          151 QTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ  207 (227)
T ss_dssp             EECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             EecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence            8864321100                        00134588889999999987643

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.61  E-value=9.1e-08  Score=87.10  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC----CCeEEEEccCCCCCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCC
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPG   88 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~----~~v~~~~~d~~~Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPG   88 (297)
                      ..++..|+++.|++.|+++.....    .++.++++|+..+|+ +++||+|++. ..+++++   ...+|++++|+||||
T Consensus       105 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  183 (299)
T 3g2m_A          105 WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPG  183 (299)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCC
Confidence            345566888999999998765543    689999999999998 6899988854 5577776   378999999999999


Q ss_pred             cEEEEEecCC
Q 022411           89 GTILIYKKLT   98 (297)
Q Consensus        89 G~l~i~~~~~   98 (297)
                      |+|++..+..
T Consensus       184 G~l~~~~~~~  193 (299)
T 3g2m_A          184 GKFLLSLAMS  193 (299)
T ss_dssp             EEEEEEEECC
T ss_pred             cEEEEEeecC
Confidence            9999987653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.59  E-value=3.3e-07  Score=79.49  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             CceEEEeecCCccC--------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHH
Q 022411            7 QSAVLALSEDKILP--------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQL   77 (297)
Q Consensus         7 ~~~VLll~~~~~vt--------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~   77 (297)
                      +.+||-|--|+...        ..|+++.|++.++++      ++.++.+++..+|+++++||+|++..++++++ +..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERA  121 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHH
Confidence            56788876655443        335668888888764      68899999999999999999999999999887 7899


Q ss_pred             HHHHHhcccCCcEEEEEecCCCCcc-ch-----------H----HHHHHHHHHHHHCCcccccc
Q 022411           78 LEEISRVLKPGGTILIYKKLTSDKG-DV-----------D----KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~~~~~~g-~~-----------~----~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++++.++|+|||.+++..+...... ..           .    ...+++...|..+||..++.
T Consensus       122 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~  185 (219)
T 1vlm_A          122 LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  185 (219)
T ss_dssp             HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence            9999999999999999876542110 00           0    02356778888999987654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.59  E-value=4.6e-08  Score=85.36  Aligned_cols=89  Identities=12%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             ccCceEEEeecCC-----------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCC
Q 022411            5 KMQSAVLALSEDK-----------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~-----------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~   72 (297)
                      +.+.+||-|--|+           .++..|+++.|++.|+++......++.++.+++..++++ ++||+|++.. +++|+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~  110 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYL  110 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGC
T ss_pred             CCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhc
Confidence            3456777775544           344567789999999887665556899999999998876 7899999986 77777


Q ss_pred             C----hHHHHHHHHhcccCCcEEEEE
Q 022411           73 P----GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        73 ~----~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .    ...+++++.|+|||||++++.
T Consensus       111 ~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          111 QTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             CSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            3    467899999999999999884

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.57  E-value=4.6e-08  Score=89.09  Aligned_cols=81  Identities=15%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCCCCCCC------CcccEEEeccccCCCChHHHHHHHHhccc
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQLPVES------FSIDTVLSISSSHELPGDQLLEEISRVLK   86 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~Lp~~d------~sfD~Vls~~~~~~~~~~~~L~ei~RvLK   86 (297)
                      +..++..|+++.|++.|+++....   ..++.+++++++.+++++      ++||+|++..++||+....+++++.|+||
T Consensus        61 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lk  140 (299)
T 3g5t_A           61 FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLR  140 (299)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcC
Confidence            344456677899999999877654   678999999999999888      89999999999999887899999999999


Q ss_pred             CCcEEEEEec
Q 022411           87 PGGTILIYKK   96 (297)
Q Consensus        87 PGG~l~i~~~   96 (297)
                      |||.|++...
T Consensus       141 pgG~l~i~~~  150 (299)
T 3g5t_A          141 KDGTIAIWGY  150 (299)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999998543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.56  E-value=3.4e-08  Score=86.49  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=82.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|+++.|++.|+++...  ...++.++.+|+..++ ++.+||+|++...+++++   ...+++++.|+|||||+|+
T Consensus        90 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  168 (235)
T 3lcc_A           90 FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELI  168 (235)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEE
Confidence            445668889999999887654  3457999999999987 456999999999999886   4789999999999999999


Q ss_pred             EEecCCCCc--cc-hHHHHHHHHHHHHHCCcccccch
Q 022411           93 IYKKLTSDK--GD-VDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        93 i~~~~~~~~--g~-~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      +........  +. .....+.+...|..+||..+...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          169 TLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             EEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             EEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            887653211  11 11123477888899999876543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=1.8e-08  Score=90.09  Aligned_cols=114  Identities=16%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-|--|+            .++..|+++.|++.++++     .++.++.++++.+|+++++||+|++..++||+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  107 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-----PQVEWFTGYAENLALPDKSVDGVISILAIHHF  107 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-----TTEEEECCCTTSCCSCTTCBSEEEEESCGGGC
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-----cCCEEEECchhhCCCCCCCEeEEEEcchHhhc
Confidence            3456777775543            344556777777765432     28999999999999999999999999999988


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecCCCCcc-----c-hH----------HHHHHHHHHHHHCCcccccc
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKLTSDKG-----D-VD----------KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g-----~-~~----------~~~~~l~~~L~laGFv~v~~  125 (297)
                      + ...++++++|+|| ||++++.++......     . +.          .....+. .|..+||.++..
T Consensus       108 ~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~  175 (261)
T 3ege_A          108 SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEA  175 (261)
T ss_dssp             SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEE
T ss_pred             cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeE
Confidence            8 7899999999999 999988876532110     0 00          0124566 889999987754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.56  E-value=2e-08  Score=89.14  Aligned_cols=119  Identities=15%  Similarity=0.111  Sum_probs=81.7

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC--CCCCCcccEEEec----
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSI----   66 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls~----   66 (297)
                      .|.+||-|--|+.             ++..|+++.|++.|+++......++.++.++++.+  ++++++||.|+.-    
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~  139 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence            4567776654433             44568889999999988777777888888887643  6789999999753    


Q ss_pred             -cccCCCC-hHHHHHHHHhcccCCcEEEEEecCC------CCccchHHH-HHHHHHHHHHCCccccc
Q 022411           67 -SSSHELP-GDQLLEEISRVLKPGGTILIYKKLT------SDKGDVDKA-ISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        67 -~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~------~~~g~~~~~-~~~l~~~L~laGFv~v~  124 (297)
                       ...++++ ...++.|++|+|||||+|++.+...      ......... .+.+...|..+||....
T Consensus       140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~  206 (236)
T 3orh_A          140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  206 (236)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred             ccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence             2344444 6789999999999999998865321      111111111 23455678889998654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.55  E-value=9.7e-08  Score=86.04  Aligned_cols=91  Identities=12%  Similarity=0.079  Sum_probs=71.5

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.|.+||-|--|.             .++..|+++.|++.|+++....  ..++.++.+++..+|   ++||+|++...+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l  139 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAF  139 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCch
Confidence            3456777775443             3344567789999998876543  357999999998776   889999999999


Q ss_pred             CCC--C-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           70 HEL--P-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        70 ~~~--~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +|+  . ...+++++.|+|||||++++.++..
T Consensus       140 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          140 EHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             GGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             hhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            988  3 5789999999999999999987653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.55  E-value=9e-08  Score=81.95  Aligned_cols=90  Identities=12%  Similarity=0.151  Sum_probs=71.5

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-|--|+            .++..|+++.|++.+++   ....++.++.+++..+ +++++||+|++..++|++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~---~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~  120 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR---HGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHV  120 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG---GCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh---cCCCCeEEEecccccC-CCCCceeEEEEechhhcC
Confidence            3455777775544            34455677888888765   2236799999999988 788999999999999999


Q ss_pred             Ch---HHHHHHHHhcccCCcEEEEEecCC
Q 022411           73 PG---DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        73 ~~---~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +.   ..++++++|+|||||++++.++..
T Consensus       121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          121 PDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            83   789999999999999999997643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.54  E-value=4.2e-08  Score=87.35  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCCC----hHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELP----GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~~----~~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|+++.|++.|+++.    .++.++.+|+..+++ +++||+|++.. +++|++    ...++++++|+|||||+|+
T Consensus        74 ~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~  148 (263)
T 3pfg_A           74 TVEGLELSADMLAIARRRN----PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV  148 (263)
T ss_dssp             EEEEEESCHHHHHHHHHHC----TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHhhC----CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            3456688899999988754    378999999999988 78999999997 888885    3578999999999999999


Q ss_pred             EEe
Q 022411           93 IYK   95 (297)
Q Consensus        93 i~~   95 (297)
                      +..
T Consensus       149 i~~  151 (263)
T 3pfg_A          149 VEP  151 (263)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            863

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.54  E-value=5.9e-08  Score=87.53  Aligned_cols=80  Identities=11%  Similarity=-0.008  Sum_probs=64.8

Q ss_pred             CCccChHHHHHHHHHHHHHHhhh------------------cCCCeEEEEccCCCCCCCC-CcccEEEeccccCCCC---
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQ------------------CDPQIITQASSLSQLPVES-FSIDTVLSISSSHELP---   73 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~------------------~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~---   73 (297)
                      +..|+..|+++.|++.|+++...                  ...++.++++|+..+++++ ++||+|++..++++++   
T Consensus        90 G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~  169 (252)
T 2gb4_A           90 GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGD  169 (252)
T ss_dssp             TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGG
T ss_pred             CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHH
Confidence            34556679999999999765431                  2368999999999999875 8999999988888887   


Q ss_pred             hHHHHHHHHhcccCCcEEEEEe
Q 022411           74 GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ...+++++.|+|||||+|++..
T Consensus       170 ~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          170 HDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEE
Confidence            2568999999999999997543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.53  E-value=9.7e-08  Score=84.37  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC------------------------------CCe-EEEEccCCCCC-CCC---CcccEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD------------------------------PQI-ITQASSLSQLP-VES---FSIDTV   63 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~------------------------------~~v-~~~~~d~~~Lp-~~d---~sfD~V   63 (297)
                      ++..|+++.|++.++++.....                              .++ .+..+++..++ +++   ++||+|
T Consensus        82 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v  161 (265)
T 2i62_A           82 IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCL  161 (265)
T ss_dssp             EEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEE
T ss_pred             EEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEE
Confidence            3455788899999887654321                              027 88999998764 356   899999


Q ss_pred             EeccccC----CCC-hHHHHHHHHhcccCCcEEEEEecCCCCc---cc-----hHHHHHHHHHHHHHCCcccccch
Q 022411           64 LSISSSH----ELP-GDQLLEEISRVLKPGGTILIYKKLTSDK---GD-----VDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        64 ls~~~~~----~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~-----~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++..++|    +++ ...++++++|+|||||+|++........   +.     .....+.+...|..+||..+...
T Consensus       162 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          162 LSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             EEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEE
Confidence            9999888    444 5789999999999999999987543211   00     00113477788999999876543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.53  E-value=2.3e-07  Score=87.38  Aligned_cols=107  Identities=10%  Similarity=0.063  Sum_probs=78.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTI   91 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l   91 (297)
                      ++..|+ +.|++.|++++...  ..++.++.+|+...  |++ ++||+|++...+|+++ .  ..+|++++|+|||||+|
T Consensus       206 ~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l  283 (363)
T 3dp7_A          206 VTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKV  283 (363)
T ss_dssp             EEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEE
T ss_pred             EEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence            334455 78889988876543  25799999999875  566 7899999999999887 3  47899999999999999


Q ss_pred             EEEecCCCCccchH----------------------HHHHHHHHHHHHCCcccccchh
Q 022411           92 LIYKKLTSDKGDVD----------------------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        92 ~i~~~~~~~~g~~~----------------------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      +|.+..........                      .+.+++...|..+||..++...
T Consensus       284 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~  341 (363)
T 3dp7_A          284 YIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQD  341 (363)
T ss_dssp             EEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCC
T ss_pred             EEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEe
Confidence            99886532211110                      0235677788889998876543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.51  E-value=8.4e-08  Score=84.63  Aligned_cols=88  Identities=10%  Similarity=0.069  Sum_probs=71.6

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-|--|+              .++..|+++.|++.++++    ..++.++.+++..++ ++++||+|++...+||
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~  107 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK-PAQKADLLYANAVFQW  107 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC-CSSCEEEEEEESCGGG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC-ccCCcCEEEEeCchhh
Confidence            455677765443              344556778888888765    467999999999998 7889999999999999


Q ss_pred             CC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           72 LP-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        72 ~~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++ ...++.+++|+|||||+|++..+..
T Consensus       108 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A          108 VPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             STTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            97 7899999999999999999988643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.49  E-value=1.2e-07  Score=85.12  Aligned_cols=93  Identities=18%  Similarity=0.089  Sum_probs=73.0

Q ss_pred             ccCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCC-CCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPV-ESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~   68 (297)
                      +.+.+||-+--|+.             ++..|+++.|++.|+++.....  .++.++.+++..+|+ ++++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            45667887755443             3355777899999988765432  468999999999988 6889999999988


Q ss_pred             cCC--CC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHE--LP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~--~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +|+  .+   ...+++++.|+|||||+|++..+.
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            877  33   478999999999999999988754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.49  E-value=4.9e-08  Score=85.89  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC--CCCCCcccEEEe-cccc--CCCC---hHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLS-ISSS--HELP---GDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls-~~~~--~~~~---~~~~L~ei~RvLKPGG   89 (297)
                      .++..|+++.|++.|+++......++.++.+++..+  |+++++||+|++ .+.+  +..+   ...++++++|+|||||
T Consensus        85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG  164 (236)
T 1zx0_A           85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGG  164 (236)
T ss_dssp             EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCe
Confidence            344668889999999987766567899999999988  899999999999 4442  2222   2467999999999999


Q ss_pred             EEEEEecCCC------CccchHHHH-HHHHHHHHHCCcccc
Q 022411           90 TILIYKKLTS------DKGDVDKAI-SALEGKLLLAGFLDA  123 (297)
Q Consensus        90 ~l~i~~~~~~------~~g~~~~~~-~~l~~~L~laGFv~v  123 (297)
                      +|++.+....      ........+ +.....|..+||...
T Consensus       165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~  205 (236)
T 1zx0_A          165 VLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE  205 (236)
T ss_dssp             EEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGG
T ss_pred             EEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCC
Confidence            9998764311      111111111 234457889999853

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.48  E-value=5.7e-08  Score=88.02  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-----------------C--------------CCeEEEEccCCC-CCCC-----CCcc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-----------------D--------------PQIITQASSLSQ-LPVE-----SFSI   60 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-----------------~--------------~~v~~~~~d~~~-Lp~~-----d~sf   60 (297)
                      .|+..|+++.|++.|++++...                 .              ..+.++.+|+.. +|++     +++|
T Consensus        96 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f  175 (289)
T 2g72_A           96 DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA  175 (289)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSE
T ss_pred             eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCC
Confidence            4455688899999888754321                 0              014567778887 6643     4679


Q ss_pred             cEEEeccccCC----CC-hHHHHHHHHhcccCCcEEEEEecCCCCc---c-----chHHHHHHHHHHHHHCCcccccch
Q 022411           61 DTVLSISSSHE----LP-GDQLLEEISRVLKPGGTILIYKKLTSDK---G-----DVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        61 D~Vls~~~~~~----~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g-----~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      |+|+++++++|    ++ ...++++++|+|||||+|++........   +     ......+.+...|..+||..+...
T Consensus       176 D~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          176 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             CEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence            99999999988    44 5789999999999999999875332210   0     000123478888999999876543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.47  E-value=9.8e-07  Score=76.71  Aligned_cols=113  Identities=17%  Similarity=0.232  Sum_probs=81.6

Q ss_pred             cccCceEEEeecC--------------CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSED--------------KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~--------------~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~   68 (297)
                      .+.|.+||-+--|              ..++..|+++.|++.|++++.....++.++.+|+..+ ++++++||+|+++..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            3456677777666              2344567788999999988766545899999997533 566789999999866


Q ss_pred             cCCCC--------------------hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           69 SHELP--------------------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        69 ~~~~~--------------------~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      +++..                    ...++.++.++|||||++++..+..      ......+...+..+||..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~~~~~~~l~~~g~~~  200 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK------EKLLNVIKERGIKLGYSV  200 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC------HHHHHHHHHHHHHTTCEE
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc------HhHHHHHHHHHHHcCCce
Confidence            55432                    2678999999999999999875432      122346777889999953

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.47  E-value=1.6e-07  Score=81.09  Aligned_cols=91  Identities=22%  Similarity=0.258  Sum_probs=72.0

Q ss_pred             CceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc--CCC
Q 022411            7 QSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS--HEL   72 (297)
Q Consensus         7 ~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~--~~~   72 (297)
                      +.+||-|--|+            .++..|+++.|++.|+++......++.++.+|+..+++++++||+|++...+  ++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~  118 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEP  118 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCH
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCH
Confidence            45677765544            3345567789999998876555578999999999999888999999999874  443


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      . ...+++++.++|||||++++.++.
T Consensus       119 ~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          119 LELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            3 578999999999999999988764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.46  E-value=2.3e-07  Score=85.04  Aligned_cols=118  Identities=8%  Similarity=0.086  Sum_probs=86.5

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.|.+||-+--|+             .++..|+++.|++.|+++....  ..++.++.+++..+|   ++||+|++..++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l  165 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAF  165 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChH
Confidence            3466777775443             3445577789999998876543  356999999998875   789999999999


Q ss_pred             CCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccch---------------H------------HHHHHHHHHHHHCC
Q 022411           70 HELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDV---------------D------------KAISALEGKLLLAG  119 (297)
Q Consensus        70 ~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~---------------~------------~~~~~l~~~L~laG  119 (297)
                      ++++   ...+++++.|+|||||++++.++........               .            ...+++...+..+|
T Consensus       166 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG  245 (318)
T 2fk8_A          166 EHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAG  245 (318)
T ss_dssp             GGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCC
Confidence            9884   5789999999999999999988764321100               0            01346677788899


Q ss_pred             cccccc
Q 022411          120 FLDAQR  125 (297)
Q Consensus       120 Fv~v~~  125 (297)
                      |..+..
T Consensus       246 f~~~~~  251 (318)
T 2fk8_A          246 FTVPEP  251 (318)
T ss_dssp             CBCCCC
T ss_pred             CEEEEE
Confidence            987654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.45  E-value=3.1e-07  Score=84.99  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+ +.|++.|+++....  ..++.++.+|+. .|++. .||+|++...+|+++.   ..++++++++|||||+|+|.+
T Consensus       198 ~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  274 (332)
T 3i53_A          198 VLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE  274 (332)
T ss_dssp             EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3466 78888888766543  467999999996 45555 8999999999999883   789999999999999999998


Q ss_pred             cCCCCccc---hH-----------HHHHHHHHHHHHCCcccccchh
Q 022411           96 KLTSDKGD---VD-----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        96 ~~~~~~g~---~~-----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      ........   .+           .+.+++...|..+||..++...
T Consensus       275 ~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  320 (332)
T 3i53_A          275 AVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP  320 (332)
T ss_dssp             CCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            65322111   00           1135678889999999876543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.44  E-value=3.6e-07  Score=83.19  Aligned_cols=91  Identities=8%  Similarity=0.124  Sum_probs=72.4

Q ss_pred             ccCceEEEeecC-------------CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSED-------------KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~-------------~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.|.+||-|--|             ..++..|+++.|++.|+++....  ..++.++.+|+..+   +++||+|++...+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~  147 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAF  147 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchH
Confidence            456677776443             34455677889999998876553  34799999999876   7899999999999


Q ss_pred             CCCC-h---------HHHHHHHHhcccCCcEEEEEecCC
Q 022411           70 HELP-G---------DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        70 ~~~~-~---------~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++++ +         ..+++++.|+|||||++++.+...
T Consensus       148 ~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          148 EHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             GGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             HhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence            9985 3         689999999999999999988754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.43  E-value=4.8e-07  Score=81.19  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=87.1

Q ss_pred             cccCceEEEeecCCccC---------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC---CCCCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKILP---------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS---QLPVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~---~Lp~~d~sfD~Vls   65 (297)
                      +|.|++||.|--|+..+               ..|++++|++.+++++++ ..++..+.++..   ..++..++||+|++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-~~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-RRNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-CTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-hcCeeEEEEeccCccccccccceEEEEEE
Confidence            57899999997766544               225668899988876543 468888887764   45677889999987


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEEecCCCC--ccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD--KGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~--~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      ....++ ....++.+++|+|||||+++|.......  ..+......+..+.|..+||..++.....|.
T Consensus       154 d~~~~~-~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf  220 (233)
T 4df3_A          154 DVAQPE-QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPF  220 (233)
T ss_dssp             CCCCTT-HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTT
T ss_pred             eccCCh-hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence            653322 2568899999999999999987543211  0112233445567788999988776555443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.42  E-value=2.4e-07  Score=78.87  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC-C-hHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL-P-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~-~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++..|+++.|++.|+++......++.++.+++..+++++++||+|++.+ .|+. . ...++.++.++|||||++++..
T Consensus        53 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A           53 EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF-CHLPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC-CCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh-hcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            34456778899999988766555589999999999999999999999864 2331 2 5789999999999999999998


Q ss_pred             cCCCCc----cch-----HHHHHHHHHHHHHCCcccccc
Q 022411           96 KLTSDK----GDV-----DKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        96 ~~~~~~----g~~-----~~~~~~l~~~L~laGFv~v~~  125 (297)
                      +.....    +..     ....+++...+.  ||..+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~  168 (202)
T 2kw5_A          132 FAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA  168 (202)
T ss_dssp             ECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred             eccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence            654321    000     012345655555  9987654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.41  E-value=2.1e-07  Score=80.12  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=65.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h---HHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G---DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~---~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.++++... ..++.++.+++..++ ++++||+|++..++||++ +   ..++.++.|+|||||.|++
T Consensus        75 ~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~  152 (216)
T 3ofk_A           75 RLTVIDVMPRAIGRACQRTKR-WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF  152 (216)
T ss_dssp             EEEEEESCHHHHHHHHHHTTT-CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhccc-CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            344567889999999887544 448999999999998 688999999999999988 4   4679999999999999999


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      ..+.
T Consensus       153 ~~~~  156 (216)
T 3ofk_A          153 GSAR  156 (216)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.39  E-value=5e-07  Score=77.74  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=64.9

Q ss_pred             CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           42 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ++.+..+++..+|+++++||+|++..++|+.....++.+++|+|+|||++++.++.... .    ..+.+...+..+||.
T Consensus        98 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~----~~~~~~~~l~~~Gf~  172 (215)
T 2zfu_A           98 DPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRF-E----DVRTFLRAVTKLGFK  172 (215)
T ss_dssp             STTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGC-S----CHHHHHHHHHHTTEE
T ss_pred             CceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCC-C----CHHHHHHHHHHCCCE
Confidence            57788999999999999999999999888644789999999999999999998765311 1    223677889999998


Q ss_pred             cccc
Q 022411          122 DAQR  125 (297)
Q Consensus       122 ~v~~  125 (297)
                      .+..
T Consensus       173 ~~~~  176 (215)
T 2zfu_A          173 IVSK  176 (215)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.39  E-value=2.5e-07  Score=78.02  Aligned_cols=91  Identities=19%  Similarity=0.096  Sum_probs=71.6

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-+--|+            .++..|+++.|++.++++.... ..++.++.+++..+++ +++||+|++...++++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~  110 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMFL  110 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGGS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhhC
Confidence            345677664443            3445577788999988776543 3479999999999988 8899999999988888


Q ss_pred             C---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 P---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +   ...++.++.|+|||||++++.++.
T Consensus       111 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (199)
T 2xvm_A          111 EAKTIPGLIANMQRCTKPGGYNLIVAAM  138 (199)
T ss_dssp             CGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence            6   478999999999999998877643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.39  E-value=2.4e-07  Score=79.62  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=81.5

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC--CCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ--LPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~--Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-+-.|+            .++..|+++.|++.++++.      ..+..+++..  +|+++++||+|++...++|
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~  105 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEH  105 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEEEEEEESCGGG
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCCccCEEEECChhhh
Confidence            455677664443            3445567778888776543      2677888876  6788899999999999988


Q ss_pred             CC-hHHHHHHHHhcccCCcEEEEEecCCCCcc----------------c------hHHHHHHHHHHHHHCCcccccc
Q 022411           72 LP-GDQLLEEISRVLKPGGTILIYKKLTSDKG----------------D------VDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g----------------~------~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++ +..++.++.++|||||.+++..+......                .      .....+++...+..+||..+..
T Consensus       106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  182 (230)
T 3cc8_A          106 LFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKV  182 (230)
T ss_dssp             SSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEE
Confidence            87 78999999999999999999876432100                0      0012346777888899987654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.38  E-value=1.6e-07  Score=86.89  Aligned_cols=80  Identities=13%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCC-------CeEEEEccC------CCC--CCCCCcccEEEeccccCCC----ChHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDP-------QIITQASSL------SQL--PVESFSIDTVLSISSSHEL----PGDQLL   78 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~-------~v~~~~~d~------~~L--p~~d~sfD~Vls~~~~~~~----~~~~~L   78 (297)
                      .|+..|+++.|++.|+++......       ++.+.++++      +.+  ++++++||+|++.+++|++    +...++
T Consensus        73 ~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l  152 (302)
T 2vdw_A           73 LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVM  152 (302)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHH
Confidence            345668999999999987654332       267778777      433  3567899999999988874    247899


Q ss_pred             HHHHhcccCCcEEEEEecC
Q 022411           79 EEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        79 ~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++++|+|||||+|++..+.
T Consensus       153 ~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          153 NNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             HHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCCEEEEEeCC
Confidence            9999999999999988764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.37  E-value=9e-07  Score=73.90  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=82.9

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEec-cccCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~-~~~~~   71 (297)
                      +.+.+||-+-.|+            .++..|+++.|++.++++.    .++.++.+++..+++++++||+|++. ..+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  120 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQISETDFDLIVSAGNVMGF  120 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence            3456777775443            3445566778888877653    45889999999999888999999998 56777


Q ss_pred             CC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           72 LP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++   ...++.++.++|+|||++++..+.....     ....+...+..+||..+..
T Consensus       121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~-----~~~~~~~~l~~~Gf~~~~~  172 (195)
T 3cgg_A          121 LAEDGREPALANIHRALGADGRAVIGFGAGRGW-----VFGDFLEVAERVGLELENA  172 (195)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC-----CHHHHHHHHHHHTEEEEEE
T ss_pred             cChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc-----CHHHHHHHHHHcCCEEeee
Confidence            65   3789999999999999999887653211     1236777888999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.37  E-value=3.5e-07  Score=77.92  Aligned_cols=93  Identities=24%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-+--|+             .++..|+++.|++.++++... ..++.++.+++..+++++++||+|++...+++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-VPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-CTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-CCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            4456777774443             344567788999998876543 46899999999999999999999998765543


Q ss_pred             CC----------------hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           72 LP----------------GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        72 ~~----------------~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +.                ...++.++.|+|||||++++.++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            21                3789999999999999999998754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.36  E-value=5.5e-07  Score=82.82  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=78.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i   93 (297)
                      ++..|++ .|++.|+++....  ..++.++.+|+...+++.. ||+|++...+|+++ .  ..++++++++|||||++++
T Consensus       192 ~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i  269 (335)
T 2r3s_A          192 IFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIV  269 (335)
T ss_dssp             EEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            3455667 8888888776443  3469999999988887765 99999999999886 2  6899999999999999999


Q ss_pred             EecCCCCc--cchH-----------------HHHHHHHHHHHHCCcccccch
Q 022411           94 YKKLTSDK--GDVD-----------------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        94 ~~~~~~~~--g~~~-----------------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .++.....  ....                 ...+++...+..+||..++..
T Consensus       270 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~  321 (335)
T 2r3s_A          270 FDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH  321 (335)
T ss_dssp             EECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred             EeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence            98764321  1110                 013467778889999877654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.36  E-value=7.5e-07  Score=84.04  Aligned_cols=103  Identities=14%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh-H--HHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG-D--QLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~-~--~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+ +.|++.|+++....  ..++.++.+|+. .|++. .||+|++...+|+++. .  .+|++++++|||||+|+|.+
T Consensus       231 ~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          231 LLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            4466 77888888766443  467999999997 56666 8999999999999883 2  69999999999999999988


Q ss_pred             cCCCCccchH----------------HHHHHHHHHHHHCCcccccch
Q 022411           96 KLTSDKGDVD----------------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        96 ~~~~~~g~~~----------------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ..........                .+.+++...|..+||..++..
T Consensus       308 ~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  354 (369)
T 3gwz_A          308 NLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSL  354 (369)
T ss_dssp             EBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred             eccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEE
Confidence            6533211110                013567778888999887654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.36  E-value=5.2e-07  Score=77.89  Aligned_cols=79  Identities=10%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC------CCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD------PQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPG   88 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~------~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPG   88 (297)
                      .++..|+++.|++.|++++....      .++.++.+++..+++++++||+|++..++++++ +  ..+++++.|+||||
T Consensus        55 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A           55 QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            55567888999999988764321      279999999998888889999999999999998 4  68999999999999


Q ss_pred             cEEEEEec
Q 022411           89 GTILIYKK   96 (297)
Q Consensus        89 G~l~i~~~   96 (297)
                      |.+++...
T Consensus       135 G~li~~~~  142 (217)
T 3jwh_A          135 IVIVTTPN  142 (217)
T ss_dssp             EEEEEEEB
T ss_pred             EEEEEccC
Confidence            97776643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.36  E-value=1.1e-06  Score=75.24  Aligned_cols=111  Identities=9%  Similarity=0.032  Sum_probs=80.8

Q ss_pred             ccCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            5 KMQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+.+||-+--|+              .++..|+++.|++.|++++... ..++.++.+++........+||+|++....
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  118 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG  118 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC
Confidence            3456677665443              3445577889999998876543 367999999996554444789999998765


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      +  ....++.++.++|||||++++.....       .....+...+..+|| +++.
T Consensus       119 ~--~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~l~~~g~-~~~~  164 (204)
T 3e05_A          119 G--MLEEIIDAVDRRLKSEGVIVLNAVTL-------DTLTKAVEFLEDHGY-MVEV  164 (204)
T ss_dssp             T--CHHHHHHHHHHHCCTTCEEEEEECBH-------HHHHHHHHHHHHTTC-EEEE
T ss_pred             c--CHHHHHHHHHHhcCCCeEEEEEeccc-------ccHHHHHHHHHHCCC-ceeE
Confidence            4  45789999999999999999976542       233467778899999 5443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.34  E-value=5.5e-07  Score=77.72  Aligned_cols=80  Identities=13%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc-C-----CCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccC
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC-D-----PQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKP   87 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~-~-----~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKP   87 (297)
                      ..++..|+++.|++.|+++.... .     .++.++.+++..+++++++||+|++..++++++ +  ..+++++.|+|||
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp  133 (219)
T 3jwg_A           54 EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP  133 (219)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC
Confidence            35556788899999998875432 1     289999999999998889999999999999998 3  5899999999999


Q ss_pred             CcEEEEEec
Q 022411           88 GGTILIYKK   96 (297)
Q Consensus        88 GG~l~i~~~   96 (297)
                      ||.+++...
T Consensus       134 gG~~i~~~~  142 (219)
T 3jwg_A          134 QTVIVSTPN  142 (219)
T ss_dssp             SEEEEEEEB
T ss_pred             CEEEEEccc
Confidence            997765543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.34  E-value=9.2e-07  Score=76.79  Aligned_cols=86  Identities=13%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             cCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCC
Q 022411            6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~   72 (297)
                      .+.+||-+--|+.            ++..|+++.|++.|+++.    .++.++.+++..+++ +++||+|++.. +++|+
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~  114 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL----PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL  114 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC----TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred             CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC----CCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence            4567777755543            344566788888887653    568999999999887 77999999544 77777


Q ss_pred             C----hHHHHHHHHhcccCCcEEEEEec
Q 022411           73 P----GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        73 ~----~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +    ...++++++++|||||++++.++
T Consensus       115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          115 KTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             CSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            4    36899999999999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.32  E-value=1.4e-06  Score=75.39  Aligned_cols=99  Identities=15%  Similarity=0.019  Sum_probs=74.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHhccc
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLK   86 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLK   86 (297)
                      ++..|+++.|++.|++++... ..++.++.+++..++  +++++||+|++++...|..         ...++.++.++||
T Consensus        68 v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk  147 (214)
T 1yzh_A           68 YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP  147 (214)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSC
T ss_pred             EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcC
Confidence            345577889999998876544 368999999999887  7889999999987655432         1579999999999


Q ss_pred             CCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           87 PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        87 PGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      |||.|++.....       .....+...+..+||..+.
T Consensus       148 pgG~l~~~~~~~-------~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          148 ENGEIHFKTDNR-------GLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             TTCEEEEEESCH-------HHHHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEeCCH-------HHHHHHHHHHHHCCCeeee
Confidence            999999875321       1123555667778997654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.32  E-value=9e-07  Score=82.20  Aligned_cols=89  Identities=9%  Similarity=0.109  Sum_probs=70.9

Q ss_pred             cccCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|.+||.|-.|+              .|+..|++++|++.|+++++.. ..++.++++++..+|  +++||+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence            46678888887664              2334578899999999887543 368999999998876  789999997653


Q ss_pred             cCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         .+ ...++++++|+|||||+|++.+..
T Consensus       198 ---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          198 ---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence               34 678999999999999999998753

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.28  E-value=9e-07  Score=82.31  Aligned_cols=117  Identities=16%  Similarity=0.207  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC-CCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411           22 SAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .|+ +.|++.|+++....  ..++.++.+|+...+ +....||+|++...+|+++.   ..++++++++|||||+|+|.+
T Consensus       209 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          209 WDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            344 55777777765443  346999999998775 23456999999999998883   689999999999999999988


Q ss_pred             cCCCCc--cchH-----------------HHHHHHHHHHHHCCcccccchhccccCccceeEeeeeecCCC
Q 022411           96 KLTSDK--GDVD-----------------KAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPT  147 (297)
Q Consensus        96 ~~~~~~--g~~~-----------------~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~akKP~  147 (297)
                      ......  .+..                 .+.+++...|..+||..++...      ..  ...+.++||+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~------g~--~~l~~a~kp~  350 (352)
T 3mcz_A          288 MTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSI------GR--YTLLIGQRSS  350 (352)
T ss_dssp             ECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEEE------TT--EEEEEEECCC
T ss_pred             eccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeecc------Cc--eEEEEEecCC
Confidence            642211  1100                 1134677889999999876321      11  2246677874

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.28  E-value=6.6e-07  Score=80.60  Aligned_cols=80  Identities=14%  Similarity=0.065  Sum_probs=66.7

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i   93 (297)
                      ..++..|+++.|++.+++++.....++.++.+|+..+++ +++||+|++..++||++ .  ..+++++.++|||||.+++
T Consensus       143 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  221 (286)
T 3m70_A          143 YDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLI  221 (286)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            345566888999999988776554589999999999887 78999999999999886 2  5899999999999999877


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      ....
T Consensus       222 ~~~~  225 (286)
T 3m70_A          222 VAAM  225 (286)
T ss_dssp             EEEB
T ss_pred             EEec
Confidence            6543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.27  E-value=5.3e-07  Score=77.18  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=86.8

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      +.+.+||-+--|+             .++..|+++.|++.|+++.... ..++.+..+|+...  .+++||+|++...++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILAE  136 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcHH
Confidence            3455676664443             3446678889999998876544 33499999999764  368999999987665


Q ss_pred             CCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchhccccCccceeEeeeeecCCCCCC
Q 022411           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKI  150 (297)
Q Consensus        71 ~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~akKP~~~~  150 (297)
                      +  ...+++++.++|||||++++......       ....+...+..+||..+.....     ... ...++.++|..+.
T Consensus       137 ~--~~~~l~~~~~~L~~gG~l~~~~~~~~-------~~~~~~~~~~~~Gf~~~~~~~~-----~~w-~~~~~~~~~~~~~  201 (205)
T 3grz_A          137 I--LLDLIPQLDSHLNEDGQVIFSGIDYL-------QLPKIEQALAENSFQIDLKMRA-----GRW-IGLAISRKHEGHH  201 (205)
T ss_dssp             H--HHHHGGGSGGGEEEEEEEEEEEEEGG-------GHHHHHHHHHHTTEEEEEEEEE-----TTE-EEEEEEECC----
T ss_pred             H--HHHHHHHHHHhcCCCCEEEEEecCcc-------cHHHHHHHHHHcCCceEEeecc-----CCE-EEEEEeccccccc
Confidence            4  36789999999999999999765431       1236777888999987654321     222 2235556776665


Q ss_pred             CCc
Q 022411          151 GSS  153 (297)
Q Consensus       151 gs~  153 (297)
                      +++
T Consensus       202 ~~~  204 (205)
T 3grz_A          202 HHH  204 (205)
T ss_dssp             ---
T ss_pred             ccC
Confidence            543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.25  E-value=2.4e-06  Score=74.82  Aligned_cols=116  Identities=19%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             ccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC----CCCCCCcccEEEec
Q 022411            5 KMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ----LPVESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~----Lp~~d~sfD~Vls~   66 (297)
                      +.+.+||-|--|+..              +..|+++.|++.+++++... .++.++.+++..    +++. .+||+|+. 
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~-  149 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIV-EKVDVIYE-  149 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEE-
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEE-
Confidence            346677877655433              34466788888888775443 789999999988    7777 78999993 


Q ss_pred             cccCCCC-h---HHHHHHHHhcccCCcEEEEEecC-CCCcc-chHHH-HHHHHHHHHHCCcccccchhc
Q 022411           67 SSSHELP-G---DQLLEEISRVLKPGGTILIYKKL-TSDKG-DVDKA-ISALEGKLLLAGFLDAQRIQL  128 (297)
Q Consensus        67 ~~~~~~~-~---~~~L~ei~RvLKPGG~l~i~~~~-~~~~g-~~~~~-~~~l~~~L~laGFv~v~~~~~  128 (297)
                          +++ +   ..++.++.|+|||||++++.... ..... ..... .+++. .|..+||..++....
T Consensus       150 ----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          150 ----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI  213 (230)
T ss_dssp             ----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred             ----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence                333 3   67799999999999999986211 11111 11111 13555 778889987665443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.25  E-value=1.3e-06  Score=76.02  Aligned_cols=99  Identities=12%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHhcc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVL   85 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvL   85 (297)
                      .++..|+++.|++.|+++++.. ..++.++.+|+..++  +++++||.|++++...|..         ...++.++.|+|
T Consensus        64 ~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~L  143 (213)
T 2fca_A           64 NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVM  143 (213)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHH
T ss_pred             CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHc
Confidence            3445678889999998877554 467999999998876  7789999999877544432         257899999999


Q ss_pred             cCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           86 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        86 KPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      ||||.|++.....       .....+...+..+||...
T Consensus       144 kpgG~l~~~td~~-------~~~~~~~~~~~~~g~~~~  174 (213)
T 2fca_A          144 GKGGSIHFKTDNR-------GLFEYSLKSFSEYGLLLT  174 (213)
T ss_dssp             TTSCEEEEEESCH-------HHHHHHHHHHHHHTCEEE
T ss_pred             CCCCEEEEEeCCH-------HHHHHHHHHHHHCCCccc
Confidence            9999999876321       112244455667788654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.24  E-value=9.6e-06  Score=72.14  Aligned_cols=71  Identities=7%  Similarity=-0.049  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhhcC--CCeEEEEcc---CCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           28 IRDLGDEAVEQCD--PQIITQASS---LSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        28 m~~~A~~~~~~~~--~~v~~~~~d---~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      |++.|+++.....  .++.++.++   ...+|+++++||+|++...+++++ +..+++.+.++++|||++++.++..
T Consensus        86 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A           86 TLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             CHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             HHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            7888887665432  579999998   567788899999999999999988 5566666666666699999987653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.22  E-value=1.3e-06  Score=79.42  Aligned_cols=79  Identities=11%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC-----------CCCCcccEEEeccccCCCC---hHHHHHHHHhc
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-----------VESFSIDTVLSISSSHELP---GDQLLEEISRV   84 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp-----------~~d~sfD~Vls~~~~~~~~---~~~~L~ei~Rv   84 (297)
                      |+..|+++.|+++|++++.. ..++.++.+|+...+           ++..+||+|++..++||++   ...++++++|+
T Consensus       107 v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~  185 (274)
T 2qe6_A          107 VVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDA  185 (274)
T ss_dssp             EEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHH
T ss_pred             EEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHh
Confidence            34557789999999987633 467999999997531           3345899999999999987   47899999999


Q ss_pred             ccCCcEEEEEecCC
Q 022411           85 LKPGGTILIYKKLT   98 (297)
Q Consensus        85 LKPGG~l~i~~~~~   98 (297)
                      |||||+|++.+...
T Consensus       186 L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          186 LAPGSYLFMTSLVD  199 (274)
T ss_dssp             SCTTCEEEEEEEBC
T ss_pred             CCCCcEEEEEEecC
Confidence            99999999998765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.20  E-value=1.4e-06  Score=76.86  Aligned_cols=112  Identities=12%  Similarity=0.003  Sum_probs=81.1

Q ss_pred             cCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCC---CCcccEEEecc
Q 022411            6 MQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVE---SFSIDTVLSIS   67 (297)
Q Consensus         6 ~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~   67 (297)
                      .+.+||-|-.|+.              ++..|+++.|++.|++++... ..++.++.++++.+++.   +++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            4556777655543              334477789999998876554 34799999999888764   67999999876


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      .   .....++.++.++|||||+|++.....     .......+...+..+||.....
T Consensus       150 ~---~~~~~~l~~~~~~LkpgG~l~~~~g~~-----~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          150 V---ARLSVLSELCLPLVKKNGLFVALKAAS-----AEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             C---SCHHHHHHHHGGGEEEEEEEEEEECC------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             c---CCHHHHHHHHHHhcCCCCEEEEEeCCC-----chHHHHHHHHHHHHcCCeEeEE
Confidence            2   236789999999999999999875321     1223345667788899976543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.20  E-value=3.6e-06  Score=78.68  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +..|+ +.|++.|+++....  ..++.++.+|+...|+++.  |+|++...+|+++   ...++++++++|||||+|+|.
T Consensus       218 ~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          218 TILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             EEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            34466 77888888776543  3459999999998887654  9999999999887   377899999999999999998


Q ss_pred             ecCCCCc-cc-h--------------H----HHHHHHHHHHHHCCcccccchh
Q 022411           95 KKLTSDK-GD-V--------------D----KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        95 ~~~~~~~-g~-~--------------~----~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      +...... .. .              .    ...+++...+..+||..++...
T Consensus       295 e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~  347 (359)
T 1x19_A          295 DMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVR  347 (359)
T ss_dssp             EECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEE
T ss_pred             ecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEe
Confidence            8542110 00 0              0    1223667778888998766543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.20  E-value=1.7e-06  Score=79.84  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH--HHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD--QLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~--~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+ +.|++.|+++...  ...++.++.+|+.. +++ ..||+|++...+|+++ ..  .++++++++|||||+|+|.+
T Consensus       196 ~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          196 MLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             EEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4455 6677888776543  24679999999977 666 6799999999999877 33  89999999999999999998


Q ss_pred             cCCCCcc-chH----------------HHHHHHHHHHHHCCcccccch
Q 022411           96 KLTSDKG-DVD----------------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        96 ~~~~~~g-~~~----------------~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ......+ ...                .+.+++...+..+||..++..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  320 (334)
T 2ip2_A          273 RTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV  320 (334)
T ss_dssp             CCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             eccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence            6522111 110                013466777888888876654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.20  E-value=2.3e-06  Score=80.10  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+ +.|++.|+++....  ..++.++.+|+.. +++. .||+|++...+|+++ .  ..++++++++|||||+|+|.+
T Consensus       211 ~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (374)
T 1qzz_A          211 LVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  287 (374)
T ss_dssp             EEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            4466 78899988876543  3479999999865 4444 399999999999888 3  389999999999999999988


Q ss_pred             c--CC-CCccc-hH---------------HHHHHHHHHHHHCCcccccchh
Q 022411           96 K--LT-SDKGD-VD---------------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        96 ~--~~-~~~g~-~~---------------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .  .. ..... ..               ...+++...|..+||..++...
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~  338 (374)
T 1qzz_A          288 RADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT  338 (374)
T ss_dssp             CCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             chhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            7  32 11000 00               0234667788889998776544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.19  E-value=1e-06  Score=74.03  Aligned_cols=93  Identities=13%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-CCCCcccEEEeccccC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISSSH   70 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~   70 (297)
                      +.|.+||-+--|+            .|+..|+++.|++.|++++... ..++.++.++...++ +.+++||+|+++..+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~  100 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL  100 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence            4566777665443            4556688999999999877543 368999998887754 5578999998874322


Q ss_pred             CC--------C--hHHHHHHHHhcccCCcEEEEEecC
Q 022411           71 EL--------P--GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        71 ~~--------~--~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.        +  ...++.+++|+|||||++++..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A          101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            21        1  357889999999999999988764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.18  E-value=1.2e-05  Score=75.40  Aligned_cols=115  Identities=23%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhhh-cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCC-
Q 022411           26 NAIRDLGDEAVEQ-CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSD-  100 (297)
Q Consensus        26 e~m~~~A~~~~~~-~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~-  100 (297)
                      +.+++.|++..+. ...+|+++.+|+...|++  .+|+|+....+|.++.   ..+|++++++|+|||+|+|.+..-.. 
T Consensus       212 p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~  289 (353)
T 4a6d_A          212 PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED  289 (353)
T ss_dssp             HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT
T ss_pred             HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC
Confidence            4567777765433 356899999999766654  4799999999998883   47899999999999999999865221 


Q ss_pred             -ccchHH----------------HHHHHHHHHHHCCcccccchhccccCccceeEeeeeecCCCC
Q 022411          101 -KGDVDK----------------AISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTW  148 (297)
Q Consensus       101 -~g~~~~----------------~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~akKP~~  148 (297)
                       .++...                +.+++...|..+||..++......    .. + .|.|+|.+.
T Consensus       290 ~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~----~~-~-~i~ArKgt~  348 (353)
T 4a6d_A          290 RRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGA----IY-D-AILARKGTH  348 (353)
T ss_dssp             SCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSS----SC-E-EEEEECCCC
T ss_pred             CCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCC----ce-E-EEEEEecCc
Confidence             111111                235778889999999887654221    11 1 366777654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.16  E-value=1.2e-06  Score=80.20  Aligned_cols=92  Identities=16%  Similarity=0.086  Sum_probs=70.0

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhh--------cCCCeEEEEccCCCCC----CC--CC
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQ--------CDPQIITQASSLSQLP----VE--SF   58 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~--------~~~~v~~~~~d~~~Lp----~~--d~   58 (297)
                      .+.+||-|--|+.             ++..|+++.|++.|+++...        ...++.++++|+..++    ++  ++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            4556777754432             33446778999998876543        2347899999999886    64  45


Q ss_pred             cccEEEeccccCCC--C---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           59 SIDTVLSISSSHEL--P---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        59 sfD~Vls~~~~~~~--~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +||+|++..++||+  +   ...++.++.|+|||||.|++..+.
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            99999999999997  2   368999999999999999998764

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.15  E-value=1.6e-06  Score=75.79  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=76.2

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccC-CCCCCC-CCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVE-SFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~-~~Lp~~-d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-+--|+            .++..|+++.|++.++++    ..++.++++++ +.+|++ +++||+|++..    
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----  119 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----APHADVYEWNGKGELPAGLGAPFGLIVSRR----  119 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----CCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence            455666664443            445668888999998875    56799999999 688998 89999999872    


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                       ....++++++|+|||||+|+......    ..    ..+...+..+||..+..
T Consensus       120 -~~~~~l~~~~~~LkpgG~l~~~~~~~----~~----~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          120 -GPTSVILRLPELAAPDAHFLYVGPRL----NV----PEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             -CCSGGGGGHHHHEEEEEEEEEEESSS----CC----THHHHHHHHTTCEEEEE
T ss_pred             -CHHHHHHHHHHHcCCCcEEEEeCCcC----CH----HHHHHHHHHCCCeEEEE
Confidence             24568899999999999999332211    11    15677889999987654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.14  E-value=1e-06  Score=79.36  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCCC---CCCCcccEEEec-cccCCCC--------hHHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQLP---VESFSIDTVLSI-SSSHELP--------GDQLLEE   80 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~Lp---~~d~sfD~Vls~-~~~~~~~--------~~~~L~e   80 (297)
                      .++..|+++.|++.|+++...     ...++.+..+++..+|   +++++||+|++. .+++|++        ...++++
T Consensus        81 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~  160 (293)
T 3thr_A           81 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN  160 (293)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHH
Confidence            455668889999999876422     1357888999999888   889999999997 7777765        4789999


Q ss_pred             HHhcccCCcEEEEEecC
Q 022411           81 ISRVLKPGGTILIYKKL   97 (297)
Q Consensus        81 i~RvLKPGG~l~i~~~~   97 (297)
                      ++|+|||||+|++..+.
T Consensus       161 ~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          161 IASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             HHHTEEEEEEEEEEEEC
T ss_pred             HHHHcCCCeEEEEEeCC
Confidence            99999999999988653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.14  E-value=7.3e-07  Score=81.38  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             CCeEEEEccCCCCC-----CCCCcccEEEeccccCCCC-------hHHHHHHHHhcccCCcEEEEEe
Q 022411           41 PQIITQASSLSQLP-----VESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp-----~~d~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++.++.+|+...+     +.+++||+|++..+++|++       ...++++++|+|||||+|++..
T Consensus       154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            47999999997654     6789999999999887762       4689999999999999999864

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.12  E-value=2.2e-06  Score=75.19  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=71.6

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCC-----CcccEEEecc
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLSIS   67 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d-----~sfD~Vls~~   67 (297)
                      +.+.+||-|.-|+            .++..|+++.|++.++++.  ...++.++++|+..+++..     ..||+|++..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN--TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS--CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--cccCceEEECcccccccccccccccCccEEEEcc
Confidence            4456777775554            3345577889999998765  2347999999999876543     3499999999


Q ss_pred             ccCCCC---hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           68 SSHELP---GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        68 ~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      .+|+++   ...++++++|+|||||+|++.++..
T Consensus       133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999987   3689999999999999999998764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.10  E-value=6.9e-06  Score=68.35  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCC--eEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQ--IITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~--v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .+.+||-+--|+            .++..|+++.|++.++++.... ..+  +.+..+++.. ++++++||+|++...+|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  130 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIR  130 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCST
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcc
Confidence            455677665443            3445577788999988876543 334  9999999877 45578999999988777


Q ss_pred             CC-C-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           71 EL-P-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        71 ~~-~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +. . ...+++++.++|+|||++++..+..
T Consensus       131 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          131 AGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            63 3 5789999999999999999988764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.09  E-value=2.5e-07  Score=88.25  Aligned_cols=119  Identities=9%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             cCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-+--|+.            ++..|+++.|++.|+++  ... ....+..+++..+|+++++||+|++..+++|+
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~  184 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI  184 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence            4557777755433            33447778888888764  111 11123345666778889999999999999999


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecCCCC------ccch------HHHHHHHHHHHHHCCcccccch
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKLTSD------KGDV------DKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~------~g~~------~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      + +..++++++|+|||||+|++..+....      ...+      -...+.+...+..+||..+...
T Consensus       185 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~  251 (416)
T 4e2x_A          185 PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ  251 (416)
T ss_dssp             TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence            8 889999999999999999998654110      0000      0123478888999999876543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.07  E-value=5e-06  Score=77.44  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEEEec
Q 022411           22 SAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .|+ +.|++.|+++....  ..++.++.+|+.. +++. .||+|++...+|+++ .  ..++++++++|||||+|+|.+.
T Consensus       213 ~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          213 LEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  289 (360)
T ss_dssp             EEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            345 67888888766543  3479999999865 4444 499999999999888 3  4799999999999999999986


Q ss_pred             C-CCCcc--chH---------------HHHHHHHHHHHHCCcccccchh
Q 022411           97 L-TSDKG--DVD---------------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        97 ~-~~~~g--~~~---------------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      . .....  .+.               ...+++...|..+||..++...
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  338 (360)
T 1tw3_A          290 DDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ  338 (360)
T ss_dssp             CBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             eccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence            5 21111  110               0134677788899998776544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.06  E-value=1.8e-06  Score=76.90  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc-CCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-~~~   72 (297)
                      .+.+||-|--|+            .++..|+++.|++.++++..   .+  ++.+++..+|+++++||+|++...+ |+.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~---~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  128 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV---KN--VVEAKAEDLPFPSGAFEAVLALGDVLSYV  128 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC---SC--EEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC---CC--EEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence            345677664433            34566788899999887643   12  7889999999999999999997654 444


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      + ...+++++.|+|||||+|++..+.
T Consensus       129 ~~~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          129 ENKDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            5 789999999999999999998764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.06  E-value=9.3e-06  Score=75.73  Aligned_cols=85  Identities=14%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEEEecCCCCc-cc-hH---------
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILIYKKLTSDK-GD-VD---------  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i~~~~~~~~-g~-~~---------  105 (297)
                      ..++.++.+|+. .+++  +||+|++...+|+++ .  ..+|++++|+|||||+|+|.+...... .. ..         
T Consensus       231 ~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~  307 (348)
T 3lst_A          231 AGRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLA  307 (348)
T ss_dssp             TTSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhh
Confidence            457999999995 3455  899999999999888 4  589999999999999999988642211 11 00         


Q ss_pred             ------HHHHHHHHHHHHCCcccccchh
Q 022411          106 ------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus       106 ------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                            .+.+++...|..+||..++...
T Consensus       308 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          308 ARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             TTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence                  1235677888999998876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.05  E-value=2.8e-06  Score=74.80  Aligned_cols=112  Identities=13%  Similarity=0.054  Sum_probs=81.2

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      +.|.+||-+--|+               .++..|+++.+++.|+++.+..  ..++.+..+|+..+++++++||+|++..
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~  174 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL  174 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence            4466777775443               2334456788888888776543  4679999999998888889999999842


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .    .+..++.++.++|||||++++..+..       .....+...+..+||..++...
T Consensus       175 ~----~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          175 M----EPWKVLEKAALALKPDRFLVAYLPNI-------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             S----CGGGGHHHHHHHEEEEEEEEEEESCH-------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             c----CHHHHHHHHHHhCCCCCEEEEEeCCH-------HHHHHHHHHHHHCCCceEEEEE
Confidence            1    24578999999999999999988642       1233555667779998776543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.05  E-value=5e-06  Score=74.56  Aligned_cols=113  Identities=17%  Similarity=0.061  Sum_probs=81.1

Q ss_pred             cCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCC---CCcccEEEecc
Q 022411            6 MQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVE---SFSIDTVLSIS   67 (297)
Q Consensus         6 ~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~   67 (297)
                      .+.+||-|-.|+.              |+..|.++.|++.|+++++.. ..++.++.++++.++..   +++||+|++..
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA  159 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence            4556776655443              345577889999999887654 34699999999988754   47999999975


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ..   +...++.++.++|||||+|++.....     .......+...+...||......
T Consensus       160 ~~---~~~~ll~~~~~~LkpgG~l~~~~g~~-----~~~e~~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          160 VA---PLCVLSELLLPFLEVGGAAVAMKGPR-----VEEELAPLPPALERLGGRLGEVL  210 (249)
T ss_dssp             SC---CHHHHHHHHGGGEEEEEEEEEEECSC-----CHHHHTTHHHHHHHHTEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHcCCCeEEEEEeCCC-----cHHHHHHHHHHHHHcCCeEEEEE
Confidence            32   24688999999999999999876432     12223356667778899866543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.04  E-value=3.3e-06  Score=77.33  Aligned_cols=77  Identities=10%  Similarity=0.120  Sum_probs=63.1

Q ss_pred             ccChHHHHHHHHHHHHHHhhh-----------------------c---------CCCeEEEEccCCCCCCC-CCcccEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ-----------------------C---------DPQIITQASSLSQLPVE-SFSIDTVL   64 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~-----------------------~---------~~~v~~~~~d~~~Lp~~-d~sfD~Vl   64 (297)
                      .++..|+++.|++.|++++-.                       .         ..+|.|.++++...|++ .+.||+|+
T Consensus       139 ~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~  218 (274)
T 1af7_A          139 KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIF  218 (274)
T ss_dssp             EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEE
T ss_pred             EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEE
Confidence            456778999999999986410                       0         03699999999887776 57899999


Q ss_pred             eccccCCCC-h--HHHHHHHHhcccCCcEEEEE
Q 022411           65 SISSSHELP-G--DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        65 s~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +.++++|++ .  ..++.+++++|+|||.|++-
T Consensus       219 crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          219 CRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             ECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            999999998 3  68999999999999999873

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.03  E-value=4.3e-06  Score=73.46  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccc-cCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISS-SHELP---GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~-~~~~~---~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.|+++......++.++++++..++++ ++||+|++... .++++   ...+++++.++|||||.+++
T Consensus        65 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~  143 (252)
T 1wzn_A           65 EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (252)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            445668889999999987766556899999999998876 68999998643 44444   46899999999999999987


Q ss_pred             Eec
Q 022411           94 YKK   96 (297)
Q Consensus        94 ~~~   96 (297)
                      ..+
T Consensus       144 ~~~  146 (252)
T 1wzn_A          144 DFP  146 (252)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.02  E-value=6.1e-06  Score=76.10  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=81.7

Q ss_pred             ccCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCCCC--CCCcccEE
Q 022411            5 KMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQLPV--ESFSIDTV   63 (297)
Q Consensus         5 ~~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~Lp~--~d~sfD~V   63 (297)
                      +++.+||.|--|..              ++..|+.+.|++.|+++...     ..+++.++.+|+..++.  ++++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            34567887755433              33556778899998876521     25789999999987654  47899999


Q ss_pred             EeccccCCCC-----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        64 ls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ++....++.+     ...+++++.|+|||||+|++.......  . ......+.+.+..+||..+...
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~-~~~~~~~~~~l~~~GF~~v~~~  238 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--D-LELIEKMSRFIRETGFASVQYA  238 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT--C-HHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--c-hHHHHHHHHHHHhCCCCcEEEE
Confidence            9976554433     168899999999999999987543211  1 1234467778889999876544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.02  E-value=8e-06  Score=72.86  Aligned_cols=102  Identities=11%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC--CCCCcccEEEeccccCCC--------------------C
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSSHEL--------------------P   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~--------------------~   73 (297)
                      .++..|+.+.|++.|++++...  ..++.++.+|+..++  +++++||+|+++..++..                    .
T Consensus        74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~  153 (259)
T 3lpm_A           74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMC  153 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------H
T ss_pred             cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccC
Confidence            4556688889999998876543  346999999998875  567899999997554322                    0


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                       ...++.++.++|||||+|++.....    .    ..++...+...||.......
T Consensus       154 ~~~~~l~~~~~~LkpgG~l~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          154 TLEDTIRVAASLLKQGGKANFVHRPE----R----LLDIIDIMRKYRLEPKRIQF  200 (259)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEECTT----T----HHHHHHHHHHTTEEEEEEEE
T ss_pred             CHHHHHHHHHHHccCCcEEEEEEcHH----H----HHHHHHHHHHCCCceEEEEE
Confidence             2568999999999999999865432    1    22566677888997655433

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.01  E-value=4.1e-06  Score=77.02  Aligned_cols=82  Identities=7%  Similarity=0.018  Sum_probs=64.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC------CCCCccc-----EEEeccccCCCCh----HHHHHH
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP------VESFSID-----TVLSISSSHELPG----DQLLEE   80 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp------~~d~sfD-----~Vls~~~~~~~~~----~~~L~e   80 (297)
                      ..|+..|.++.|+++|++++... ..++.|+++|+..++      ....+||     .|+++.++||++.    ..++++
T Consensus       106 arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~  185 (277)
T 3giw_A          106 SRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRR  185 (277)
T ss_dssp             CEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHH
T ss_pred             CEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHH
Confidence            34445688899999999876543 246999999998762      1146677     5888889999983    479999


Q ss_pred             HHhcccCCcEEEEEecCC
Q 022411           81 ISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        81 i~RvLKPGG~l~i~~~~~   98 (297)
                      +++.|+|||+|++.....
T Consensus       186 l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          186 LLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             HHTTSCTTCEEEEEEECC
T ss_pred             HHHhCCCCcEEEEEeccC
Confidence            999999999999998764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.01  E-value=9.4e-06  Score=67.40  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             ccCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCC-CcccEEEecccc
Q 022411            5 KMQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVES-FSIDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~   69 (297)
                      +.+.+||-+-.|+.            ++..|+++.+++.++++.....  .++.+..+++.. ++++ .+||+|++...+
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCch
Confidence            34567777755542            3345667888998887765432  579999998876 3344 589999988765


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ++  ...++.++.++|+|||++++.....       .....+...+...|| +++.
T Consensus       111 ~~--~~~~l~~~~~~l~~gG~l~~~~~~~-------~~~~~~~~~l~~~g~-~~~~  156 (192)
T 1l3i_A          111 GE--LQEILRIIKDKLKPGGRIIVTAILL-------ETKFEAMECLRDLGF-DVNI  156 (192)
T ss_dssp             TC--HHHHHHHHHHTEEEEEEEEEEECBH-------HHHHHHHHHHHHTTC-CCEE
T ss_pred             HH--HHHHHHHHHHhcCCCcEEEEEecCc-------chHHHHHHHHHHCCC-ceEE
Confidence            43  4688999999999999999887542       223466677888999 5443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.00  E-value=5e-06  Score=79.42  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC--
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE--   71 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~--   71 (297)
                      .+.+||-+--|+            .++..|+++.|++.|++++......+.++.+|+..++.++++||+|+++..+|+  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            345677664443            344557788999999988766555699999999998877789999999988887  


Q ss_pred             ---CC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           72 ---LP-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        72 ---~~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                         .. ...++.++.++|||||++++.....
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence               22 4689999999999999999986543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.99  E-value=2.3e-06  Score=75.21  Aligned_cols=78  Identities=9%  Similarity=-0.026  Sum_probs=61.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC-C--CCCCcccEEEeccccCCCCh---------HHHHHHHHhcc
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-P--VESFSIDTVLSISSSHELPG---------DQLLEEISRVL   85 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L-p--~~d~sfD~Vls~~~~~~~~~---------~~~L~ei~RvL   85 (297)
                      +...|+++.|++.|++++... ..++.++.+|+..+ +  +++++||.|++++...|...         ..++.+++|+|
T Consensus        61 v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~L  140 (218)
T 3dxy_A           61 FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKL  140 (218)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHE
T ss_pred             EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHc
Confidence            445588889999998876554 46799999998874 4  78999999999876555431         25999999999


Q ss_pred             cCCcEEEEEec
Q 022411           86 KPGGTILIYKK   96 (297)
Q Consensus        86 KPGG~l~i~~~   96 (297)
                      ||||+|++...
T Consensus       141 kpGG~l~i~td  151 (218)
T 3dxy_A          141 QLGGVFHMATD  151 (218)
T ss_dssp             EEEEEEEEEES
T ss_pred             CCCcEEEEEeC
Confidence            99999998764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.97  E-value=4.1e-06  Score=70.86  Aligned_cols=80  Identities=10%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCC-C-hHHHHHHHHh--cccCCcEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHEL-P-GDQLLEEISR--VLKPGGTI   91 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~-~-~~~~L~ei~R--vLKPGG~l   91 (297)
                      ++..|+++.|++.|+++++.. ..++.++++|+..++  +++++||+|++...+++. . ...++.++.+  +|||||+|
T Consensus        70 v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l  149 (189)
T 3p9n_A           70 VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVA  149 (189)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEE
Confidence            456678889999999877554 358999999998764  457899999999887775 3 5789999999  99999999


Q ss_pred             EEEecCC
Q 022411           92 LIYKKLT   98 (297)
Q Consensus        92 ~i~~~~~   98 (297)
                      ++.....
T Consensus       150 ~~~~~~~  156 (189)
T 3p9n_A          150 VVERATT  156 (189)
T ss_dssp             EEEEETT
T ss_pred             EEEecCC
Confidence            9987653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.97  E-value=5.2e-06  Score=74.85  Aligned_cols=109  Identities=14%  Similarity=0.147  Sum_probs=79.0

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      +.+.+||-+--|+               .++..|+++.+++.|+++....  ..++.+..+|+.. ++++++||+|++. 
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC-
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc-
Confidence            3456777764433               3344566788899988876543  3579999999987 6778899999983 


Q ss_pred             ccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           68 SSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        68 ~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                          .+ +..++.++.++|||||++++..+..       .....+...+..+||..++..
T Consensus       187 ----~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          187 ----IPDPWNHVQKIASMMKPGSVATFYLPNF-------DQSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             ----CSCGGGSHHHHHHTEEEEEEEEEEESSH-------HHHHHHHHHSGGGTEEEEEEE
T ss_pred             ----CcCHHHHHHHHHHHcCCCCEEEEEeCCH-------HHHHHHHHHHHHCCCeEEEEE
Confidence                33 5688999999999999999987642       123355566777899876554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.97  E-value=1e-05  Score=66.90  Aligned_cols=93  Identities=9%  Similarity=-0.074  Sum_probs=65.8

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CC-CeEEEEccCC-CCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DP-QIITQASSLS-QLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~-~v~~~~~d~~-~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|+++.|++.|++++... .. ++ ++.+++. .++..+++||+|++...+++   ..++++++++|||||++++..
T Consensus        52 v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           52 AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEEe
Confidence            445678889999998876554 23 67 7778774 44433389999999888776   568999999999999999887


Q ss_pred             cCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           96 KLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ...       .....+...+...|+.-
T Consensus       128 ~~~-------~~~~~~~~~~~~~~~~~  147 (178)
T 3hm2_A          128 VTV-------ESEQMLWALRKQFGGTI  147 (178)
T ss_dssp             CSH-------HHHHHHHHHHHHHCCEE
T ss_pred             ecc-------ccHHHHHHHHHHcCCee
Confidence            542       12224555666667543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.96  E-value=2e-05  Score=68.17  Aligned_cols=107  Identities=7%  Similarity=-0.051  Sum_probs=75.9

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CC-CeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DP-QIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~-~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-|--|+            .|+..|+++.|++.|+++++.. .. ++.++.+++.........||+|++....  
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~--  132 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG--  132 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence            455666664443            3445678889999999876554 34 7999999998743344689999987633  


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                       ... ++.+++++|||||+|++.....       .....+...+...||...
T Consensus       133 -~~~-~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          133 -SQA-LYDRLWEWLAPGTRIVANAVTL-------ESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             -CHH-HHHHHHHHSCTTCEEEEEECSH-------HHHHHHHHHHHHHCSEEE
T ss_pred             -cHH-HHHHHHHhcCCCcEEEEEecCc-------ccHHHHHHHHHhCCCcEE
Confidence             445 9999999999999999887542       223356667777786543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.94  E-value=5.3e-06  Score=73.74  Aligned_cols=99  Identities=13%  Similarity=0.129  Sum_probs=68.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhh-------cCCCeEEEEccCCC-CC--CCCCcccEEEeccccCCCC---------hHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQ-------CDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHELP---------GDQLL   78 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~-------~~~~v~~~~~d~~~-Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L   78 (297)
                      .+...|+++.|++.|++++..       ...++.++.+|+.. +|  +++++||.|++.+...|..         ...++
T Consensus        72 ~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l  151 (235)
T 3ckk_A           72 LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLL  151 (235)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHH
Confidence            344568888999998876532       24689999999986 77  8899999999877544432         14799


Q ss_pred             HHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-cccc
Q 022411           79 EEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDA  123 (297)
Q Consensus        79 ~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v  123 (297)
                      ++++|+|||||.|++.....       .....+...+...| |..+
T Consensus       152 ~~~~~~LkpGG~l~~~td~~-------~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          152 AEYAYVLRVGGLVYTITDVL-------ELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             HHHHHHEEEEEEEEEEESCH-------HHHHHHHHHHHTSTTEEEE
T ss_pred             HHHHHHCCCCCEEEEEeCCH-------HHHHHHHHHHHHCCCcccc
Confidence            99999999999999875421       11123444555555 6654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.94  E-value=1.1e-05  Score=70.59  Aligned_cols=122  Identities=11%  Similarity=0.076  Sum_probs=74.5

Q ss_pred             ccCceEEEeecCCcc---------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC---CCCCCCcccEEEec
Q 022411            5 KMQSAVLALSEDKIL---------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~~v---------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~---Lp~~d~sfD~Vls~   66 (297)
                      +.|.+||-|--|+..               +..|+++.|++.+.+++.. ..++.++.+++..   +|+.+++||+|++.
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-RTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-CTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-cCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            346677777555432               2334555554544443332 3689999999987   56677899999996


Q ss_pred             cccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhcc
Q 022411           67 SSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLK  129 (297)
Q Consensus        67 ~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~k  129 (297)
                      ..  ... ...++.++.++|||||++++......  ...............|..+||..++.....
T Consensus       155 ~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  218 (233)
T 2ipx_A          155 VA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE  218 (233)
T ss_dssp             CC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECT
T ss_pred             CC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecC
Confidence            54  222 34568899999999999998643210  001112212222456778899877644433

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.93  E-value=5.7e-06  Score=78.09  Aligned_cols=85  Identities=12%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCCc--cch--------H-
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--GDV--------D-  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~--------~-  105 (297)
                      ..++.++.+|+.. |++..  |+|++...+|+++.   ..+|++++|+|||||+|+|.+......  ...        + 
T Consensus       245 ~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~  321 (368)
T 3reo_A          245 FSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDA  321 (368)
T ss_dssp             CTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHH
T ss_pred             cCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhH
Confidence            4689999999986 77754  99999999998873   478999999999999999998652211  100        0 


Q ss_pred             -----------HHHHHHHHHHHHCCcccccchh
Q 022411          106 -----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus       106 -----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                                 .+.+++...|..+||..++...
T Consensus       322 ~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  354 (368)
T 3reo_A          322 LMLAYNPGGKERTEKEFQALAMASGFRGFKVAS  354 (368)
T ss_dssp             HHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence                       0134677888999999876543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.93  E-value=9.5e-06  Score=72.60  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEe
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLS   65 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls   65 (297)
                      +.|.+||-+-.|+               .++..|+++.+++.|+++.+..    ..++.+..+|+..+++++++||+|++
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence            4466777775443               2334456688888888876543    46899999999988888899999998


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHH-CCcccccch
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLL-AGFLDAQRI  126 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~l-aGFv~v~~~  126 (297)
                      ...    .+..++.++.++|+|||++++..+..       .....+...+.. .||..++..
T Consensus       178 ~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~-------~~~~~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          178 DML----APWEVLDAVSRLLVAGGVLMVYVATV-------TQLSRIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             ESS----CGGGGHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHHSSBCCCEEE
T ss_pred             CCc----CHHHHHHHHHHhCCCCCEEEEEeCCH-------HHHHHHHHHHHhcCCcCCcEEE
Confidence            432    24578999999999999999987642       112234444544 789876554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.90  E-value=1.2e-05  Score=72.32  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCC------------------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL------------------------   72 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~------------------------   72 (297)
                      .++..|+++.|++.|++++... ..++.++.+|+... +++++||+|+++..++..                        
T Consensus       135 ~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g  213 (276)
T 2b3t_A          135 EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSG  213 (276)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcH
Confidence            3445577889999999877554 34799999998763 456799999998543322                        


Q ss_pred             -C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           73 -P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        73 -~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                       . ...++.++.++|||||++++.....    .    .+.+...+..+||..+..
T Consensus       214 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~----~----~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          214 MADIVHIIEQSRNALVSGGFLLLEHGWQ----Q----GEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEECCSS----C----HHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECch----H----HHHHHHHHHHCCCcEEEE
Confidence             1 2578899999999999999865332    1    125666788899987653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.90  E-value=1.5e-05  Score=70.37  Aligned_cols=111  Identities=16%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             ccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         5 ~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      +.|.+||-+--|+.               ++..|+++.+++.|+++.+..  ..++.+..+|+... +++.+||+|++..
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~  170 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL  170 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC
Confidence            34667777755432               334466688899988876543  23499999999854 7788999999843


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC--cccccchh
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG--FLDAQRIQ  127 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG--Fv~v~~~~  127 (297)
                      .    .+..++.++.++|||||++++..+..       ...+.+...+..+|  |.+++...
T Consensus       171 ~----~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          171 P----QPERVVEHAAKALKPGGFFVAYTPCS-------NQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             S----CGGGGHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             C----CHHHHHHHHHHHcCCCCEEEEEECCH-------HHHHHHHHHHHHcCCCccccEEEE
Confidence            2    24578999999999999999887542       22346667888999  98876544

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.87  E-value=1e-05  Score=72.02  Aligned_cols=83  Identities=24%  Similarity=0.290  Sum_probs=64.6

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-+.-|+              .++..|+++.|++.|+++.    .++.+..+++..+|+++++||+|++....  
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~--  158 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLPFSDTSMDAIIRIYAP--  158 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCSBCTTCEEEEEEESCC--
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCCCCCCceeEEEEeCCh--
Confidence            456777775443              3445567788888886643    56889999999999999999999987642  


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCC
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                          ..+.++.|+|||||+|++..+..
T Consensus       159 ----~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          159 ----CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence                24899999999999999998765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.87  E-value=1.2e-05  Score=68.82  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-+-.|+            .++..|+++.|++.|+++.... ..++.++.+|+...+.++++||+|++...+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~  155 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPE  155 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCSS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchhh
Confidence            3466777775554            3445577889999998876553 45799999999887777889999999988888


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecC
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++.     ++.++|||||+|++....
T Consensus       156 ~~~-----~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          156 IPT-----ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CCT-----HHHHTEEEEEEEEEEECS
T ss_pred             hhH-----HHHHhcccCcEEEEEEcC
Confidence            773     689999999999988764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.85  E-value=6.6e-05  Score=64.51  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             cChHHHHHHHHHHHHH----Hhhh-cCCCeEEEEccCCCCCCCCCcccEEEeccc---c--CCCC-hHHHHHHHHhcccC
Q 022411           19 LPVSAVLNAIRDLGDE----AVEQ-CDPQIITQASSLSQLPVESFSIDTVLSISS---S--HELP-GDQLLEEISRVLKP   87 (297)
Q Consensus        19 vt~~dlse~m~~~A~~----~~~~-~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~---~--~~~~-~~~~L~ei~RvLKP   87 (297)
                      ++..|+++.|++.+.+    +... ...++.++++|+.++|+++++ |.|+..+.   .  |+++ +..++++++|+|||
T Consensus        54 v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  132 (218)
T 3mq2_A           54 VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRP  132 (218)
T ss_dssp             EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCC
Confidence            3444666776665322    2212 245899999999999998887 88775442   2  2444 57899999999999


Q ss_pred             CcEEEEEecCCCC---------c--cchHHHHHHHHHHHHHCCccccc
Q 022411           88 GGTILIYKKLTSD---------K--GDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        88 GG~l~i~~~~~~~---------~--g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ||+|++.......         .  .......+.+...+..+||....
T Consensus       133 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          133 GASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             CcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            9999986432110         0  01111223477788999998654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.85  E-value=6.4e-06  Score=76.89  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             CCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH--HHHHHHHhcccC---CcEEEEEecCCCCccch------H---
Q 022411           41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD--QLLEEISRVLKP---GGTILIYKKLTSDKGDV------D---  105 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~--~~L~ei~RvLKP---GG~l~i~~~~~~~~g~~------~---  105 (297)
                      .++.++.+|+.. +++.  ||+|++...+|+++ ..  .+|++++|+|||   ||+|+|.+.........      .   
T Consensus       231 ~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~  307 (352)
T 1fp2_A          231 NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLM  307 (352)
T ss_dssp             TTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHH
T ss_pred             CCcEEEeccccC-CCCC--ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhc
Confidence            469999999965 6653  99999999999888 44  899999999999   99999998642211110      0   


Q ss_pred             -----------HHHHHHHHHHHHCCcccccch
Q 022411          106 -----------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       106 -----------~~~~~l~~~L~laGFv~v~~~  126 (297)
                                 .+.+++...+..+||..++..
T Consensus       308 d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  339 (352)
T 1fp2_A          308 DVNMACLNGKERNEEEWKKLFIEAGFQHYKIS  339 (352)
T ss_dssp             HHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             cHHHHhccCCCCCHHHHHHHHHHCCCCeeEEE
Confidence                       012467777888999876644

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.84  E-value=1.7e-05  Score=74.36  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             cCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .+.+||-|--|+             .|+..|++ +|++.|++++...  ..++.++.++++.+++++++||+|++....+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~  144 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  144 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence            345666665544             34445666 4888888876543  3459999999999999999999999976433


Q ss_pred             ---CCC-hHHHHHHHHhcccCCcEEEE
Q 022411           71 ---ELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        71 ---~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                         +.. ...++.++.|+|||||+++.
T Consensus       145 ~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          145 CLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence               333 67899999999999999873

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.82  E-value=4e-06  Score=81.30  Aligned_cols=79  Identities=10%  Similarity=0.002  Sum_probs=59.6

Q ss_pred             cChHHHHHHHHHHHHHHhh-------h--c-CCCeEEEEccCCCCCCCC--CcccEEEeccccCCCChHHHHHHHHhccc
Q 022411           19 LPVSAVLNAIRDLGDEAVE-------Q--C-DPQIITQASSLSQLPVES--FSIDTVLSISSSHELPGDQLLEEISRVLK   86 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~-------~--~-~~~v~~~~~d~~~Lp~~d--~sfD~Vls~~~~~~~~~~~~L~ei~RvLK   86 (297)
                      +...|+++.|+++|+++++       .  . ..+|.++++|+.++|+.+  ..||+|+++..+++-.....|.+++|+||
T Consensus       200 VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLK  279 (438)
T 3uwp_A          200 HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK  279 (438)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSC
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCC
Confidence            3344567778888776432       1  1 257999999999999865  57999999876543236788999999999


Q ss_pred             CCcEEEEEecC
Q 022411           87 PGGTILIYKKL   97 (297)
Q Consensus        87 PGG~l~i~~~~   97 (297)
                      |||+|++.+..
T Consensus       280 PGGrIVssE~f  290 (438)
T 3uwp_A          280 EGGRIVSSKPF  290 (438)
T ss_dssp             TTCEEEESSCS
T ss_pred             CCcEEEEeecc
Confidence            99999988754

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.82  E-value=9.4e-06  Score=68.69  Aligned_cols=93  Identities=10%  Similarity=0.021  Sum_probs=68.1

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC-CCCCcccEEEec
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp-~~d~sfD~Vls~   66 (297)
                      +.|.+||-+--|+               .++..|+++.|++.|+++....  ..++.++.+|+..++ +.+++||+|++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            4456677664443               3345566788999998876554  357999999998876 667899999987


Q ss_pred             cccC-----CC-C----hHHHHHHHHhcccCCcEEEEEecC
Q 022411           67 SSSH-----EL-P----GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        67 ~~~~-----~~-~----~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..+.     ++ .    ...+++++.++|||||++++..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            6441     11 1    247999999999999999988754

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.81  E-value=2.3e-05  Score=74.10  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=68.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCC-CCC-CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQ-LPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~-Lp~-~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|+++.|++.|+++++... .++.++.+|+.. +|. .+++||+|+++..++......++.+++++|||||++++..
T Consensus       198 v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          198 IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            3345778899999998876542 389999999988 774 4578999999876543335788999999999999653333


Q ss_pred             cCCCCccchHHHHHHHHHHHH-HCCccc
Q 022411           96 KLTSDKGDVDKAISALEGKLL-LAGFLD  122 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~-laGFv~  122 (297)
                      .... .+.. ..+..+...+. ..||..
T Consensus       278 ~~~~-~~~~-~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          278 ITRR-ESSL-DKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             ECTT-TCCH-HHHHHHHHHHHHTSCCEE
T ss_pred             EecC-cCCH-HHHHHHHHHHHHhcCcch
Confidence            3220 0111 11224555555 678754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.80  E-value=3.7e-05  Score=66.92  Aligned_cols=122  Identities=15%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             ccCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC----CCCCCcccEEEec
Q 022411            5 KMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L----p~~d~sfD~Vls~   66 (297)
                      +.|.+||-|--|+.              |+..|+++.|++...+.+.. ..++.++.+|+...    ++. ++||+|++.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence            45677887755443              33445566665544433322 34788888888763    555 789999997


Q ss_pred             cccCCCChHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhccc
Q 022411           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKS  130 (297)
Q Consensus        67 ~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp  130 (297)
                      .. +......++.+++|+|||||+|++......  ....+..........+..+ |..++.....|
T Consensus       134 ~~-~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p  197 (210)
T 1nt2_A          134 IA-QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMP  197 (210)
T ss_dssp             CC-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTT
T ss_pred             cc-ChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCC
Confidence            42 221134568999999999999998842210  0011222111122336667 88776554433

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.79  E-value=2.6e-05  Score=81.27  Aligned_cols=80  Identities=5%  Similarity=0.012  Sum_probs=66.7

Q ss_pred             CccChHHHHHHHHHHHHHHhhh-------cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhccc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQ-------CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLK   86 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~-------~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLK   86 (297)
                      ..++..|+++.|++.|++++..       ...++.++++|+..+|+.+++||+|++..+++|++.   ..++.+++|+||
T Consensus       747 a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLK  826 (950)
T 3htx_A          747 QTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH  826 (950)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcC
Confidence            3566779999999999875432       235799999999999999999999999999999983   358999999999


Q ss_pred             CCcEEEEEecC
Q 022411           87 PGGTILIYKKL   97 (297)
Q Consensus        87 PGG~l~i~~~~   97 (297)
                      || .++|..+.
T Consensus       827 PG-~LIISTPN  836 (950)
T 3htx_A          827 PK-LLIVSTPN  836 (950)
T ss_dssp             CS-EEEEEECB
T ss_pred             CC-EEEEEecC
Confidence            99 77777654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.79  E-value=2.3e-05  Score=65.62  Aligned_cols=103  Identities=10%  Similarity=0.010  Sum_probs=74.4

Q ss_pred             CceEEEeecCCc-----------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h
Q 022411            7 QSAVLALSEDKI-----------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G   74 (297)
Q Consensus         7 ~~~VLll~~~~~-----------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~   74 (297)
                      +.+||-+--|+.           ++..|+++.|++.        ..++.++++|+.. ++++++||+|+++..+++.+ .
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES--------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT--------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc--------ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence            456666655443           3344566666664        4578999999987 67779999999998887644 2


Q ss_pred             ---------HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           75 ---------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        75 ---------~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                               ..++.++.+.| |||++++..+...       ..+.+...+..+||..+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-------~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN-------RPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-------CHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC-------CHHHHHHHHHHCCCcEEEEE
Confidence                     57889999999 9999999875431       12267778889999876543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.78  E-value=2.4e-05  Score=70.32  Aligned_cols=109  Identities=10%  Similarity=0.094  Sum_probs=78.1

Q ss_pred             cCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            6 MQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         6 ~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      .|.+||-+-.|+               .++..|+++.+++.|+++.+...  .++.+..+|+... +++++||+|++...
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~~  190 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDVP  190 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECCc
Confidence            466777775443               23344567888888888765433  4799999999876 67789999998431


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                          .+..++.++.++|+|||+|++..+..       .....+...|..+||..++..
T Consensus       191 ----~~~~~l~~~~~~L~pgG~l~~~~~~~-------~~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          191 ----DPWNYIDKCWEALKGGGRFATVCPTT-------NQVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             ----CGGGTHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHSSEEEEEEE
T ss_pred             ----CHHHHHHHHHHHcCCCCEEEEEeCCH-------HHHHHHHHHHHHCCCceeEEE
Confidence                14578999999999999999987542       122355566777999877654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.77  E-value=2.7e-05  Score=72.81  Aligned_cols=86  Identities=13%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             cCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecc---
Q 022411            6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSIS---   67 (297)
Q Consensus         6 ~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~---   67 (297)
                      .+.+||-|--|+             .++..|+++ |++.|+++++..  ..++.++.+++..+++++++||+|++..   
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~  142 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY  142 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence            455677765444             233445664 888888766543  3689999999999999989999999876   


Q ss_pred             ccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           68 SSHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        68 ~~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      .+++.. ...++.++.|+|||||+++
T Consensus       143 ~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          143 FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            233344 5779999999999999997

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.76  E-value=3.3e-05  Score=72.65  Aligned_cols=84  Identities=17%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH--HHHHHHHhcccCCcEEEEEecCCCCc--cch----H-----
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD--QLLEEISRVLKPGGTILIYKKLTSDK--GDV----D-----  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~--~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~----~-----  105 (297)
                      ..++.++.+|+.. |++.  ||+|++...+|+++ ..  .+|++++|+|||||+|+|.+......  ...    .     
T Consensus       251 ~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~  327 (372)
T 1fp1_D          251 LSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDN  327 (372)
T ss_dssp             CTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHH
T ss_pred             cCCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhH
Confidence            3579999999977 7665  99999999999988 44  89999999999999999987532111  110    0     


Q ss_pred             ----------HHHHHHHHHHHHCCcccccch
Q 022411          106 ----------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       106 ----------~~~~~l~~~L~laGFv~v~~~  126 (297)
                                ...+++...|..+||..++..
T Consensus       328 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  358 (372)
T 1fp1_D          328 LMFITVGGRERTEKQYEKLSKLSGFSKFQVA  358 (372)
T ss_dssp             HHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence                      012456677888888876543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.75  E-value=5.5e-05  Score=71.23  Aligned_cols=85  Identities=18%  Similarity=0.198  Sum_probs=63.3

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCCc--cc-h-------H-
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDK--GD-V-------D-  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~-~-------~-  105 (297)
                      ..++.++.+|+.. |++..  |+|++...+|+++.   ..+|++++|+|||||+|+|.+......  .. .       + 
T Consensus       243 ~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~  319 (364)
T 3p9c_A          243 FPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDM  319 (364)
T ss_dssp             CTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHH
T ss_pred             cCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHH
Confidence            4689999999987 77765  99999999998872   578999999999999999998652211  00 0       0 


Q ss_pred             -----------HHHHHHHHHHHHCCcccccchh
Q 022411          106 -----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus       106 -----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                                 .+.+++...|..+||..++...
T Consensus       320 ~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  352 (364)
T 3p9c_A          320 IMLAHNPGGRERYEREFQALARGAGFTGVKSTY  352 (364)
T ss_dssp             HHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence                       0124577788889998876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.75  E-value=4e-05  Score=66.40  Aligned_cols=87  Identities=13%  Similarity=0.073  Sum_probs=66.2

Q ss_pred             ccCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-+-.|+.            ++..|+++.|++.++++..... ++.++.+++......+++||+|++...++++
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHHH
Confidence            34667888766543            3445667889999887765444 8999999998733356899999999988887


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 PGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +     .++.++|||||++++....
T Consensus       148 ~-----~~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          148 L-----CKPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             C-----HHHHHTEEEEEEEEEEECS
T ss_pred             H-----HHHHHHcCCCcEEEEEEcC
Confidence            6     3689999999999988754

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.74  E-value=1.1e-05  Score=69.40  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=62.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC---CCeEEEEccCCCCCC--CCCc-ccEEEeccccCCCChHHHHHHH--HhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD---PQIITQASSLSQLPV--ESFS-IDTVLSISSSHELPGDQLLEEI--SRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~---~~v~~~~~d~~~Lp~--~d~s-fD~Vls~~~~~~~~~~~~L~ei--~RvLKPGG   89 (297)
                      .|+..|+++.|++.|++++....   .++.++.+|+..+..  ++++ ||+|++...++.-....++.++  .|+|||||
T Consensus        78 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG  157 (201)
T 2ift_A           78 KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNA  157 (201)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCc
Confidence            45566888999999998876543   589999999876532  3678 9999998775522257788888  77899999


Q ss_pred             EEEEEecCC
Q 022411           90 TILIYKKLT   98 (297)
Q Consensus        90 ~l~i~~~~~   98 (297)
                      .|++.....
T Consensus       158 ~l~i~~~~~  166 (201)
T 2ift_A          158 LIYVETEKD  166 (201)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEECCC
Confidence            999876543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.72  E-value=1.7e-05  Score=70.96  Aligned_cols=111  Identities=14%  Similarity=0.094  Sum_probs=78.5

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      +.+.+||-+--|+            .++..|+++.+++.|++++......+.+..+++... +++.+||+|+++...++ 
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~-  196 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL-  196 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH-
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH-
Confidence            3466777775544            334456667888888887654433388888888752 55789999998764433 


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           73 PGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        73 ~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                       ...++.++.++|||||++++......       ....+...+..+||..+..
T Consensus       197 -~~~~l~~~~~~LkpgG~lils~~~~~-------~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          197 -HAALAPRYREALVPGGRALLTGILKD-------RAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEEEEEGG-------GHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHHHHHcCCCCEEEEEeeccC-------CHHHHHHHHHHCCCEEEEE
Confidence             45789999999999999999765431       1236777888899987654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.72  E-value=1.3e-06  Score=74.18  Aligned_cols=99  Identities=6%  Similarity=-0.065  Sum_probs=53.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCC-----CcccEEEeccccCCCC-h------------------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-----FSIDTVLSISSSHELP-G------------------   74 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d-----~sfD~Vls~~~~~~~~-~------------------   74 (297)
                      ++..|+++.|++.|+++......++.++++|+.. ++++     ++||+|+++..+++.. .                  
T Consensus        57 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~  135 (215)
T 4dzr_A           57 VTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDG  135 (215)
T ss_dssp             EEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC----------------------
T ss_pred             EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccC
Confidence            3345667788888887654433378888888877 6666     8999999975443221 0                  


Q ss_pred             --------HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH--HCCcccccc
Q 022411           75 --------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL--LAGFLDAQR  125 (297)
Q Consensus        75 --------~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~--laGFv~v~~  125 (297)
                              ..+++++.++|||||++++......   ..    +.+...+.  .+||..+..
T Consensus       136 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~----~~~~~~l~~~~~gf~~~~~  189 (215)
T 4dzr_A          136 GEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN---QA----DEVARLFAPWRERGFRVRK  189 (215)
T ss_dssp             --CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS---CH----HHHHHHTGGGGGGTEECCE
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc---cH----HHHHHHHHHhhcCCceEEE
Confidence                    6788899999999999555554321   11    24555666  789977654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.71  E-value=2e-05  Score=67.76  Aligned_cols=80  Identities=8%  Similarity=-0.045  Sum_probs=62.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHh--cccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~R--vLKPGG~l~i   93 (297)
                      .|+..|+++.|++.|+++++... .++.++++|+.. ++..+++||+|++...++.-....++.++.+  +|+|||+|++
T Consensus        79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i  158 (202)
T 2fpo_A           79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYV  158 (202)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEE
Confidence            45566888999999998775543 589999999876 5666789999999877554335678888865  5999999998


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      ....
T Consensus       159 ~~~~  162 (202)
T 2fpo_A          159 ESEV  162 (202)
T ss_dssp             EEEG
T ss_pred             EECC
Confidence            7654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.68  E-value=0.0001  Score=64.27  Aligned_cols=110  Identities=8%  Similarity=0.046  Sum_probs=76.3

Q ss_pred             ccCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            5 KMQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         5 ~~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      +.|.+||.+-.|+.            ++..|+++.+++.|+++.+..  ..++.+..+++....+++..||+|++...  
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR--  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS--
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc--
Confidence            45678888866542            334567788999988876543  36799999999875446788999998432  


Q ss_pred             CCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        71 ~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                        .+..++.++.++|+|||++++..+..       .....+...+... |.+++..
T Consensus       168 --~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~~-f~~~~~~  213 (248)
T 2yvl_A          168 --EPWHYLEKVHKSLMEGAPVGFLLPTA-------NQVIKLLESIENY-FGNLEVV  213 (248)
T ss_dssp             --CGGGGHHHHHHHBCTTCEEEEEESSH-------HHHHHHHHHSTTT-EEEEEEE
T ss_pred             --CHHHHHHHHHHHcCCCCEEEEEeCCH-------HHHHHHHHHHHhh-CCcceEE
Confidence              24578999999999999999987642       1122344444445 7766543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.66  E-value=3e-05  Score=70.49  Aligned_cols=86  Identities=16%  Similarity=0.072  Sum_probs=61.1

Q ss_pred             cCceEEEeecC------------CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCC-----CCCcccEEEeccc
Q 022411            6 MQSAVLALSED------------KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV-----ESFSIDTVLSISS   68 (297)
Q Consensus         6 ~~~~VLll~~~------------~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~-----~d~sfD~Vls~~~   68 (297)
                      .|.+||-|--|            ..|+..|+++.|++.|++++....     +..++..++.     .+++||+|++...
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~~~~~~fD~Vv~~~~  119 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEIPKELAGHFDFVLNDRL  119 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCCCGGGTTCCSEEEEESC
T ss_pred             CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeecccccccccCCCccEEEEhhh
Confidence            45566665443            345567889999999998764432     2223333322     2578999999998


Q ss_pred             cCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +||+.   ...++.++.++| |||+|++....
T Consensus       120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          120 INRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             hHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            88876   357899999999 99999988654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.66  E-value=3.4e-05  Score=71.94  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=62.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC-----C-hHHHHHHHHhcccCCcEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL-----P-GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~-----~-~~~~L~ei~RvLKPGG~l   91 (297)
                      .++..|+++.|++.++++.......+.+..+++...+  +++||+|+++..+|+.     . ...++.+++|+|||||.|
T Consensus       222 ~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l  299 (343)
T 2pjd_A          222 RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGEL  299 (343)
T ss_dssp             BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEE
Confidence            5667788899999999887665555777888886543  7799999999888752     2 478999999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++....
T Consensus       300 ~i~~~~  305 (343)
T 2pjd_A          300 RIVANA  305 (343)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            998764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.66  E-value=7e-05  Score=64.10  Aligned_cols=88  Identities=15%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      +.+.+||-+-.|+               .++..|.++.|++.++++.... ..++.+..+++......+.+||+|++...
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence            3466788775543               3444566788888888766543 35699999988543223678999999998


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +++++     .++.++|||||++++....
T Consensus       156 ~~~~~-----~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          156 GPKIP-----EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             BSSCC-----HHHHHTEEEEEEEEEEESS
T ss_pred             hHHHH-----HHHHHHcCCCcEEEEEECC
Confidence            88876     4889999999999988754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.65  E-value=8.4e-05  Score=61.18  Aligned_cols=103  Identities=5%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-+--|+            .++..|+++.|++.++++.... ..++.++.+++.. ++++++||+|++...   .
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~---~  110 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT---K  110 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC---S
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc---c
Confidence            345666664443            3445577889999998876544 3579999999987 777889999999876   2


Q ss_pred             ChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           73 PGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        73 ~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ....++.++.++  |||.+++..+..       .....+...+..+||.
T Consensus       111 ~~~~~l~~~~~~--~gG~l~~~~~~~-------~~~~~~~~~l~~~g~~  150 (183)
T 2yxd_A          111 NIEKIIEILDKK--KINHIVANTIVL-------ENAAKIINEFESRGYN  150 (183)
T ss_dssp             CHHHHHHHHHHT--TCCEEEEEESCH-------HHHHHHHHHHHHTTCE
T ss_pred             cHHHHHHHHhhC--CCCEEEEEeccc-------ccHHHHHHHHHHcCCe
Confidence            357889999999  999999987542       2234667788889975

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.63  E-value=7e-05  Score=60.84  Aligned_cols=93  Identities=17%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             cccCceEEEeecCCccChHHHHHHHHHHHHHHhhh-------cCCCeEEEEccCCCCC--------CCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQ-------CDPQIITQASSLSQLP--------VESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~~~~~~-------~~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~   68 (297)
                      .+.+.+||-+-.|+......+...+-  ....+-.       ...++.+..+++..++        +++++||+|++...
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~   97 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIG--GKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA   97 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHC--TTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhC--CCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCC
Confidence            35567888886666443333322210  0000000       1256889999998877        78889999999887


Q ss_pred             cCCCC-h-----------HHHHHHHHhcccCCcEEEEEecCC
Q 022411           69 SHELP-G-----------DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        69 ~~~~~-~-----------~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      +++.. .           ..++.++.++|+|||.+++..+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            77765 3           588999999999999999987754

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.63  E-value=1.8e-05  Score=65.85  Aligned_cols=81  Identities=14%  Similarity=0.006  Sum_probs=61.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCC----CCCCCcccEEEeccccCCCChHHHHHHH--HhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQL----PVESFSIDTVLSISSSHELPGDQLLEEI--SRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~L----p~~d~sfD~Vls~~~~~~~~~~~~L~ei--~RvLKPGG   89 (297)
                      .++..|+++.|++.|++++....  .++.++.+|+...    ++.+++||+|++...++.......+..+  .|+|||||
T Consensus        69 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG  148 (187)
T 2fhp_A           69 KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEA  148 (187)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCC
Confidence            34556788899999988765443  4799999998763    2236899999998775544456777888  99999999


Q ss_pred             EEEEEecCC
Q 022411           90 TILIYKKLT   98 (297)
Q Consensus        90 ~l~i~~~~~   98 (297)
                      .+++.....
T Consensus       149 ~l~~~~~~~  157 (187)
T 2fhp_A          149 VIVCETDKT  157 (187)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEeCCc
Confidence            999887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.61  E-value=1.3e-05  Score=70.61  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             cChHHHH-HHHHHHH---HHHhhhc-CCCeEEEEccCCCCCCC-CCcccEEEeccccCC-----C-ChHHHHHHHHhccc
Q 022411           19 LPVSAVL-NAIRDLG---DEAVEQC-DPQIITQASSLSQLPVE-SFSIDTVLSISSSHE-----L-PGDQLLEEISRVLK   86 (297)
Q Consensus        19 vt~~dls-e~m~~~A---~~~~~~~-~~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~-----~-~~~~~L~ei~RvLK   86 (297)
                      |+..|++ +.|+++|   ++++... ..++.++.++++.+|.. ...||.|++++...+     . ....++.+++|+||
T Consensus        51 v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~Lk  130 (225)
T 3p2e_A           51 YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAK  130 (225)
T ss_dssp             EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcC
Confidence            4455777 7888776   5554433 46899999999988632 134455554432111     1 13568999999999


Q ss_pred             CCcEEEEEecCCCCccc----------hHHH--H-HHHHHHHHHCCccccc
Q 022411           87 PGGTILIYKKLTSDKGD----------VDKA--I-SALEGKLLLAGFLDAQ  124 (297)
Q Consensus        87 PGG~l~i~~~~~~~~g~----------~~~~--~-~~l~~~L~laGFv~v~  124 (297)
                      |||+|++..........          +...  . .++...+..+||....
T Consensus       131 pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~  181 (225)
T 3p2e_A          131 KEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD  181 (225)
T ss_dssp             EEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence            99999983322111000          0011  1 1377788889998554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.61  E-value=6.5e-05  Score=68.10  Aligned_cols=99  Identities=8%  Similarity=-0.011  Sum_probs=72.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      |+..|+++.|++.|+++++..  ..++.++.+|+..++. +.+||+|++.....   ...++.+++++|||||.|++.+.
T Consensus       151 V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~~---~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          151 VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR---THEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCSS---GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCchh---HHHHHHHHHHHCCCCeEEEEEEe
Confidence            556688889999999876543  3359999999998876 78999999865422   35789999999999999999876


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCccc
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ..... ......+.+...+..+||..
T Consensus       227 ~~~~~-~~~~~~~~i~~~~~~~G~~~  251 (278)
T 2frn_A          227 VPEKL-MPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             EEGGG-TTTTTHHHHHHHHHHTTCEE
T ss_pred             ecccc-ccccHHHHHHHHHHHcCCee
Confidence            53110 00112336677788899964

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.60  E-value=8.1e-05  Score=66.72  Aligned_cols=77  Identities=8%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             ChHHHHHHHHHHHHHHhhh---cC--CCeEEEEccCCCC-------CCCCCcccEEEeccccCCC---------------
Q 022411           20 PVSAVLNAIRDLGDEAVEQ---CD--PQIITQASSLSQL-------PVESFSIDTVLSISSSHEL---------------   72 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~---~~--~~v~~~~~d~~~L-------p~~d~sfD~Vls~~~~~~~---------------   72 (297)
                      +..|+.+.|++.|++++..   ..  .++.++.+|+..+       ++++++||+|+++..++..               
T Consensus        64 ~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~  143 (260)
T 2ozv_A           64 TLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHA  143 (260)
T ss_dssp             EEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC------------------
T ss_pred             EEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhh
Confidence            3456778999999887654   32  2599999999877       3668899999998543322               


Q ss_pred             ----ChHHHHHHHHhcccCCcEEEEEec
Q 022411           73 ----PGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        73 ----~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                          ....++.++.++|||||+|++...
T Consensus       144 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          144 MTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             ---CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                146789999999999999988654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.60  E-value=8.2e-05  Score=69.49  Aligned_cols=80  Identities=16%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---------hHHHHHHHHhcccC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKP   87 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKP   87 (297)
                      .+...|+.+.|++.|+++++... .++.+.++|+..++.+...||+|+++..+.+..         ...++.++.++|||
T Consensus       230 ~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp  309 (354)
T 3tma_A          230 PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP  309 (354)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC
Confidence            34455677889999998876543 379999999999988888899999986654322         15788999999999


Q ss_pred             CcEEEEEecC
Q 022411           88 GGTILIYKKL   97 (297)
Q Consensus        88 GG~l~i~~~~   97 (297)
                      ||++++..+.
T Consensus       310 gG~l~i~t~~  319 (354)
T 3tma_A          310 GGRVALLTLR  319 (354)
T ss_dssp             TCEEEEEESC
T ss_pred             CcEEEEEeCC
Confidence            9999998764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.58  E-value=7.9e-05  Score=64.76  Aligned_cols=73  Identities=8%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCCCCC-CcccEEEeccccCCCChHHHHHHHHhcccCCcEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l   91 (297)
                      ++..|+++.|++.|+++....      ..++.+..+++.. ++++ ++||+|++....++++     .++.+.|||||+|
T Consensus       117 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~l  190 (227)
T 1r18_A          117 IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-----TELINQLASGGRL  190 (227)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC-----HHHHHTEEEEEEE
T ss_pred             EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHHH-----HHHHHHhcCCCEE
Confidence            344456678888888765442      4579999999886 4555 7899999998887765     6889999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++....
T Consensus       191 vi~~~~  196 (227)
T 1r18_A          191 IVPVGP  196 (227)
T ss_dssp             EEEESC
T ss_pred             EEEEec
Confidence            987654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.58  E-value=1.7e-06  Score=75.82  Aligned_cols=77  Identities=12%  Similarity=0.034  Sum_probs=62.6

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ..++..|+++.|++.|++++....  .++.++++|+..++ ++.+||+|++...+++.. ....+.+++++|+|||.+++
T Consensus       101 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          101 MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence            345566888999999998876554  48999999998887 678999999998888876 44577889999999999764


Q ss_pred             E
Q 022411           94 Y   94 (297)
Q Consensus        94 ~   94 (297)
                      .
T Consensus       180 ~  180 (241)
T 3gdh_A          180 R  180 (241)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.58  E-value=0.0001  Score=63.73  Aligned_cols=89  Identities=12%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             cccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCCCCCCcccE
Q 022411            4 GKMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDT   62 (297)
Q Consensus         4 ~~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp~~d~sfD~   62 (297)
                      .+.+.+||-+-.|+               .++..|+++.|++.++++....      ..++.+..+++...+..+++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            44567788775443               3445566788888888776542      35799999999877666789999


Q ss_pred             EEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           63 VLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        63 Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      |++....+++.     .+++++|||||+|++....
T Consensus       155 i~~~~~~~~~~-----~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP-----QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC-----HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH-----HHHHHhcCCCcEEEEEEec
Confidence            99988776543     6889999999999988654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.56  E-value=5.3e-05  Score=69.82  Aligned_cols=87  Identities=17%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             ccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      +.|.+||-+--|+.               |+..|++++|++.|+++.... ..++.++.+|+...+..+++||+|++...
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~  153 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence            34667777754432               444566788899988876543 35699999999886656789999999998


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +++++     .++.++|||||++++...
T Consensus       154 ~~~~~-----~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          154 VDEVP-----ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             BSCCC-----HHHHHHEEEEEEEEEEBC
T ss_pred             HHHHH-----HHHHHhcCCCcEEEEEEC
Confidence            88876     578999999999998754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.55  E-value=6.4e-05  Score=71.25  Aligned_cols=88  Identities=17%  Similarity=0.171  Sum_probs=66.3

Q ss_pred             cCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .+.+||-|--|+             .|+..|++ .|++.|++++...  ..++.++.++++.++++ ++||+|++....+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGY  140 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBT
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhh
Confidence            456777775554             34455667 8888888776543  34599999999999887 8999999966444


Q ss_pred             CC---C-hHHHHHHHHhcccCCcEEEEEe
Q 022411           71 EL---P-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        71 ~~---~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .+   . ...++.++.|+|||||.|++..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            43   2 5678999999999999997653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.55  E-value=7.2e-05  Score=64.70  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=66.9

Q ss_pred             cccCceEEEeecCC-------------------ccChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCC----
Q 022411            4 GKMQSAVLALSEDK-------------------ILPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLP----   54 (297)
Q Consensus         4 ~~~~~~VLll~~~~-------------------~vt~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp----   54 (297)
                      .+.+.+||-+-.|+                   .++..|+++.|++.|+++....      ..++.++.+|+...+    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            34566777775443                   3445566788888888776543      357999999998765    


Q ss_pred             CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           55 VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        55 ~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +..++||+|++....+++.     .++.+.|||||++++..+.
T Consensus       158 ~~~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASELP-----EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSCC-----HHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHH-----HHHHHhcCCCcEEEEEEcc
Confidence            6678999999988777653     7889999999999988653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.52  E-value=0.00013  Score=63.71  Aligned_cols=88  Identities=13%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCc-ccEEEecccc
Q 022411            5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFS-IDTVLSISSS   69 (297)
Q Consensus         5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~s-fD~Vls~~~~   69 (297)
                      +.+.+||-+-.|+             .++..|+++.+++.|+++.... ..++.+..+++ ..++++.. ||+|++...+
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBB
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcH
Confidence            3466788776553             3344456778888888876543 35699999987 44555554 9999999888


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCC
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      ++++     .++.++|||||++++.....
T Consensus       169 ~~~~-----~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          169 PKIP-----EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             SSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred             HHHH-----HHHHHhcCCCcEEEEEEecC
Confidence            8766     37899999999999887643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.52  E-value=0.00026  Score=63.11  Aligned_cols=125  Identities=16%  Similarity=0.054  Sum_probs=72.5

Q ss_pred             cccCceEEEeecCCccC---------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCC---CCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKILP---------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPV---ESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~---~d~sfD~Vls   65 (297)
                      ++.|.+||-|--++...               ..|+++.|++...+.+.. ..++.++.+|+.....   ..++||+|++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEcccccchhhhccccceEEEEe
Confidence            45678888886554332               224455554333222222 3689999999876431   2468999999


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEEecCCC---CccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS---DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~---~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      ..+... ....++..+.+.|||||+|++......   +.. +..........|..+||...+.....|.
T Consensus       153 d~a~~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~-~~e~~~~~~~~L~~~gf~~~~~~~l~p~  219 (232)
T 3id6_C          153 DIAQPD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKD-PKEIYKTEVEKLENSNFETIQIINLDPY  219 (232)
T ss_dssp             CCCCTT-HHHHHHHHHHHHEEEEEEEEEEEC-------CC-SSSSTTHHHHHHHHTTEEEEEEEECTTT
T ss_pred             cCCChh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCC-HHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            865311 123345556669999999998742211   100 0001124556777889998776665554

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.50  E-value=0.00016  Score=66.89  Aligned_cols=101  Identities=18%  Similarity=0.073  Sum_probs=67.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc------cCCCC-----------------h
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS------SHELP-----------------G   74 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~------~~~~~-----------------~   74 (297)
                      ++..|+++.|++.++++++.. ..++.++.+|+..++..+++||+|++...      ++..+                 .
T Consensus       146 v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q  225 (315)
T 1ixk_A          146 IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQ  225 (315)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHH
Confidence            445577788999998877654 34799999999988765678999998532      11111                 0


Q ss_pred             HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           75 DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        75 ~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      ..+|.+++++|||||+|++.+..-...+. ..   .+...+...||..+
T Consensus       226 ~~~L~~~~~~LkpGG~lv~stcs~~~~En-e~---~v~~~l~~~~~~~~  270 (315)
T 1ixk_A          226 MRLLEKGLEVLKPGGILVYSTCSLEPEEN-EF---VIQWALDNFDVELL  270 (315)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEESCCCGGGT-HH---HHHHHHHHSSEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCChHHh-HH---HHHHHHhcCCCEEe
Confidence            47899999999999999987654321111 11   23344555777644

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.50  E-value=0.0004  Score=60.05  Aligned_cols=88  Identities=16%  Similarity=0.049  Sum_probs=61.1

Q ss_pred             ccCceEEEeecCCcc---------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC---CCCCcccEEEec
Q 022411            5 KMQSAVLALSEDKIL---------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP---VESFSIDTVLSI   66 (297)
Q Consensus         5 ~~~~~VLll~~~~~v---------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp---~~d~sfD~Vls~   66 (297)
                      +.|.+||-+.-|+..               +..|+++.|++.+++++... .++.++.+++....   ....+||+|++.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            456678877655432               23355677877777765443 78999999998632   123589999986


Q ss_pred             cccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           67 SSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        67 ~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..  ... ...++.+++++|||||+|++..
T Consensus       151 ~~--~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          151 VA--QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC--CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            54  112 2355999999999999998873

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.50  E-value=2.9e-05  Score=74.98  Aligned_cols=57  Identities=18%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             CCCeEEEEccCCCCCCC------CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           40 DPQIITQASSLSQLPVE------SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~------d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..++.++++|+.++|+.      +++||+|++.. .|++. ...+|++++|+|||||+|++.+..
T Consensus       263 ~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          263 ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            46899999999999988      78999999875 45554 678999999999999999998764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.49  E-value=0.00012  Score=67.89  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC---CCC-hHHHHHHHHhcccCCcEEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH---ELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~---~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      +..|++ .|++.|+++++..  ..++.++.+++..+++++++||+|++....+   +.. ...++.++.|+|||||+++
T Consensus        65 ~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1           65 IGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            344555 5788888766443  3569999999999998889999999875322   223 5788999999999999997

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.48  E-value=9.7e-05  Score=62.72  Aligned_cols=86  Identities=12%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             CceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            7 QSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         7 ~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.+||-+-.|+..              +..|+++.|++.+++++... ..++.+..+++..++ +.++||+|++...   
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc---
Confidence            4567766544433              34456788999988876554 345999999998876 5678999997542   


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .+...++.++.++|+|||.+++...
T Consensus       142 ~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            2257899999999999999998754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.48  E-value=0.00024  Score=66.22  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hH--HHHHHHHhcccC---CcEEEEEecCCCCccc------hHH-
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GD--QLLEEISRVLKP---GGTILIYKKLTSDKGD------VDK-  106 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~--~~L~ei~RvLKP---GG~l~i~~~~~~~~g~------~~~-  106 (297)
                      ..++.++.+|+.. |++  .||+|++...+|+++ ..  .+|++++|+|||   ||+|+|.+........      ... 
T Consensus       235 ~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~  311 (358)
T 1zg3_A          235 NENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLD  311 (358)
T ss_dssp             CSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHH
T ss_pred             CCCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHh
Confidence            3569999999987 766  499999999999888 45  899999999999   9999998764221111      000 


Q ss_pred             --------------HHHHHHHHHHHCCcccccch
Q 022411          107 --------------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       107 --------------~~~~l~~~L~laGFv~v~~~  126 (297)
                                    ..+++...|..+||..++..
T Consensus       312 ~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~  345 (358)
T 1zg3_A          312 YDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT  345 (358)
T ss_dssp             HHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             hCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence                          12456677888888876543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.47  E-value=2.4e-05  Score=64.97  Aligned_cols=81  Identities=6%  Similarity=-0.035  Sum_probs=60.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHH--hcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~--RvLKPGG~l~   92 (297)
                      .++..|+++.|++.|++++....  .++.++.+|+.. ++..++.||+|++...++.......+..+.  ++|||||.++
T Consensus        56 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~  135 (177)
T 2esr_A           56 AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVV  135 (177)
T ss_dssp             EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEE
Confidence            34455788899999988765542  469999999876 454557799999986654322456777777  9999999999


Q ss_pred             EEecCC
Q 022411           93 IYKKLT   98 (297)
Q Consensus        93 i~~~~~   98 (297)
                      +.....
T Consensus       136 ~~~~~~  141 (177)
T 2esr_A          136 CETDKT  141 (177)
T ss_dssp             EEEETT
T ss_pred             EEECCc
Confidence            887654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.45  E-value=0.0001  Score=70.00  Aligned_cols=80  Identities=16%  Similarity=0.100  Sum_probs=60.8

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC----CCeEEEEccCCCCCCCCCcccEEEeccccCCC---C---hHHHHHHHHhccc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLSISSSHEL---P---GDQLLEEISRVLK   86 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~----~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~---~---~~~~L~ei~RvLK   86 (297)
                      ..++..|+++.|++.|++++....    .++.+..+|+.. ++++++||+|+++..+|+.   .   ...++.++.++||
T Consensus       247 ~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk  325 (375)
T 4dcm_A          247 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK  325 (375)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEE
T ss_pred             CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC
Confidence            345566788899999988765432    358889999987 5678899999999887752   2   2468999999999


Q ss_pred             CCcEEEEEecC
Q 022411           87 PGGTILIYKKL   97 (297)
Q Consensus        87 PGG~l~i~~~~   97 (297)
                      |||+|++....
T Consensus       326 pgG~l~iv~n~  336 (375)
T 4dcm_A          326 INGELYIVANR  336 (375)
T ss_dssp             EEEEEEEEEET
T ss_pred             CCcEEEEEEEC
Confidence            99999987654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.44  E-value=0.00012  Score=64.53  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             cChHHHHHHHHHHHHHHhhh---------cCCCeEEEEccCCC-CC--CCCCcccEEEeccccCCCC---------hHHH
Q 022411           19 LPVSAVLNAIRDLGDEAVEQ---------CDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHELP---------GDQL   77 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~---------~~~~v~~~~~d~~~-Lp--~~d~sfD~Vls~~~~~~~~---------~~~~   77 (297)
                      ++..|+++.|++.+++++..         ...++.++.+|+.. ++  +++++||.|+..+.-.|..         ...+
T Consensus        76 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~  155 (246)
T 2vdv_E           76 ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTL  155 (246)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHH
T ss_pred             EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHH
Confidence            44557788888888876543         23589999999986 67  7889999999776433321         1479


Q ss_pred             HHHHHhcccCCcEEEEEe
Q 022411           78 LEEISRVLKPGGTILIYK   95 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~   95 (297)
                      +.++.++|||||.|++..
T Consensus       156 l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          156 LSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCCEEEEEe
Confidence            999999999999999864

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.42  E-value=4.2e-05  Score=67.19  Aligned_cols=78  Identities=12%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--C-CCeEEEEccCCCC-C-CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQL-P-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~-~~v~~~~~d~~~L-p-~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l   91 (297)
                      ..++..|++++|++.|+++.+..  . .++.++.+++..+ + +++++||+|++......  ...++.+++|+|||||.|
T Consensus        82 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~--~~~~l~~~~~~LkpGG~l  159 (221)
T 3dr5_A           82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMD--LKALVDAAWPLLRRGGAL  159 (221)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTT--HHHHHHHHHHHEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHH--HHHHHHHHHHHcCCCcEE
Confidence            45566788899999999877654  2 4799999988654 2 44789999998653221  356899999999999999


Q ss_pred             EEEec
Q 022411           92 LIYKK   96 (297)
Q Consensus        92 ~i~~~   96 (297)
                      ++.+.
T Consensus       160 v~dn~  164 (221)
T 3dr5_A          160 VLADA  164 (221)
T ss_dssp             EETTT
T ss_pred             EEeCC
Confidence            98654

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.42  E-value=5.5e-05  Score=65.57  Aligned_cols=80  Identities=13%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CCCCC-----CcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVES-----FSIDTVLSISSSHELP-GDQLLEEISRVLKP   87 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp~~d-----~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP   87 (297)
                      ..++..|+++.|++.|+++++..  ..++.++.+++.. ++...     ++||+|++....++.. ...++.++ ++|||
T Consensus        84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkp  162 (221)
T 3u81_A           84 ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRK  162 (221)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCT
T ss_pred             CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCC
Confidence            34556688899999999876554  2469999999754 33222     7899999987666554 44567667 99999


Q ss_pred             CcEEEEEecC
Q 022411           88 GGTILIYKKL   97 (297)
Q Consensus        88 GG~l~i~~~~   97 (297)
                      ||+|++.+..
T Consensus       163 gG~lv~~~~~  172 (221)
T 3u81_A          163 GTVLLADNVI  172 (221)
T ss_dssp             TCEEEESCCC
T ss_pred             CeEEEEeCCC
Confidence            9999987655

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.39  E-value=0.00011  Score=68.79  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC--CCCCCcccEEEeccccCCC-----ChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHEL-----PGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~-----~~~~~L~ei~RvLKPGG   89 (297)
                      .++..++.++|++.|+++.... ..++.++.+|+..+  .+++++||+|++....++.     ....++++++|+|+|||
T Consensus       115 ~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgG  194 (317)
T 3gjy_A          115 RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGG  194 (317)
T ss_dssp             EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEE
T ss_pred             EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCc
Confidence            3455677789999998865432 56899999998654  3457899999987543322     13789999999999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      +|++....
T Consensus       195 vlv~~~~~  202 (317)
T 3gjy_A          195 LYVANCGD  202 (317)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecC
Confidence            99988754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.35  E-value=3.1e-05  Score=63.33  Aligned_cols=79  Identities=11%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC-C-CC--CCcccEEEeccccCCCChHHHHHHHH--hcccCCcEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-P-VE--SFSIDTVLSISSSHELPGDQLLEEIS--RVLKPGGTIL   92 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L-p-~~--d~sfD~Vls~~~~~~~~~~~~L~ei~--RvLKPGG~l~   92 (297)
                      ++..|+++.|++.|+++......++.++.+++... + ++  ..+||+|++...++ ......+..+.  ++|||||.++
T Consensus        66 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~  144 (171)
T 1ws6_A           66 AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYV  144 (171)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEE
Confidence            44557778999999887655433899999988763 3 11  24899999987665 23456777777  9999999999


Q ss_pred             EEecCC
Q 022411           93 IYKKLT   98 (297)
Q Consensus        93 i~~~~~   98 (297)
                      +.....
T Consensus       145 ~~~~~~  150 (171)
T 1ws6_A          145 LQHPKD  150 (171)
T ss_dssp             EEEETT
T ss_pred             EEeCCc
Confidence            887654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.34  E-value=7.2e-05  Score=65.58  Aligned_cols=79  Identities=10%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCC-C-CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQL-P-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~L-p-~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~   92 (297)
                      ..++..|+++.|++.|+++.+...  .++.++.+++... + ..+++||+|++.....  ....++.++.++|||||+|+
T Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~--~~~~~l~~~~~~LkpgG~lv  173 (232)
T 3ntv_A           96 IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKA--QSKKFFEIYTPLLKHQGLVI  173 (232)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETTSS--SHHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCcHH--HHHHHHHHHHHhcCCCeEEE
Confidence            344566788899999998775543  4799999999754 4 3478999999764322  24678999999999999998


Q ss_pred             EEecC
Q 022411           93 IYKKL   97 (297)
Q Consensus        93 i~~~~   97 (297)
                      +.+..
T Consensus       174 ~d~~~  178 (232)
T 3ntv_A          174 TDNVL  178 (232)
T ss_dssp             EECTT
T ss_pred             EeeCC
Confidence            86543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.32  E-value=0.00012  Score=67.62  Aligned_cols=89  Identities=17%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc------------CCCeEEEEccCCCC--CC
Q 022411            5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC------------DPQIITQASSLSQL--PV   55 (297)
Q Consensus         5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~------------~~~v~~~~~d~~~L--p~   55 (297)
                      +.|.+||-+-.|+               .+...|+++.+++.|+++....            ..++.+..+|+..+  ++
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            4466777765443               2334466788888888876531            35799999999876  56


Q ss_pred             CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           56 ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        56 ~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++++||+|++.....    ..++.+++++|||||+|++..+.
T Consensus       184 ~~~~fD~V~~~~~~~----~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          184 KSLTFDAVALDMLNP----HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             ----EEEEEECSSST----TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             CCCCeeEEEECCCCH----HHHHHHHHHhcCCCcEEEEEeCC
Confidence            778999999865322    34789999999999999988764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.29  E-value=0.00026  Score=65.70  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-----CCCeEEEEccCCC-CCCCCCcccEEEe
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-----DPQIITQASSLSQ-LPVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-----~~~v~~~~~d~~~-Lp~~d~sfD~Vls   65 (297)
                      +..+||.|-.|+              .++..|+.+.|++.|+++....     .+++.++.+|+.. ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            345677775443              3345577789999999876432     5689999999865 4445688999998


Q ss_pred             ccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ....++-+     ...+++++.++|+|||.|++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            76433222     1688999999999999999875

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.28  E-value=0.00011  Score=65.17  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=58.4

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CCCC--CCcccEEEeccccCCCChHHHHHHHHhcccCCcEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp~~--d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l   91 (297)
                      ..++..|+++.|++.|+++.+..  ..++.++.+++.. ++..  .++||+|++.....  ....++.++.++|||||+|
T Consensus        89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG~l  166 (248)
T 3tfw_A           89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKP--NNPHYLRWALRYSRPGTLI  166 (248)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH--HHHHHHHHHHHhcCCCeEE
Confidence            34556677889999999877543  3479999999865 4432  34899999865321  1457899999999999999


Q ss_pred             EEEecC
Q 022411           92 LIYKKL   97 (297)
Q Consensus        92 ~i~~~~   97 (297)
                      ++.+..
T Consensus       167 v~~~~~  172 (248)
T 3tfw_A          167 IGDNVV  172 (248)
T ss_dssp             EEECCS
T ss_pred             EEeCCC
Confidence            987654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.27  E-value=0.00023  Score=65.62  Aligned_cols=78  Identities=14%  Similarity=-0.046  Sum_probs=56.4

Q ss_pred             CCeEE-EEccCCCCCCCCCcccEEEeccccCC-----------CC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHH
Q 022411           41 PQIIT-QASSLSQLPVESFSIDTVLSISSSHE-----------LP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKA  107 (297)
Q Consensus        41 ~~v~~-~~~d~~~Lp~~d~sfD~Vls~~~~~~-----------~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~  107 (297)
                      .++.+ +++|+..++++ ++||+|+++...++           .. ...+++++.|+|||||+|++..+....   ..  
T Consensus       105 ~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~---~~--  178 (290)
T 2xyq_A          105 SDADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW---NA--  178 (290)
T ss_dssp             CSSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC---CH--
T ss_pred             CCCEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC---HH--
Confidence            36888 99999988765 68999999753222           11 247899999999999999997765421   11  


Q ss_pred             HHHHHHHHHHCCcccccch
Q 022411          108 ISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       108 ~~~l~~~L~laGFv~v~~~  126 (297)
                        ++...+...||..+...
T Consensus       179 --~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          179 --DLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             --HHHHHHTTEEEEEEEEE
T ss_pred             --HHHHHHHHcCCcEEEEE
Confidence              45566777889776544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.27  E-value=0.00022  Score=64.72  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=67.7

Q ss_pred             cChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEeccccCCCC-----hHHHHHHHHhcccC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKP   87 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKP   87 (297)
                      ++..|+.+.|++.|+++...     ..+++.++.+|+.. ++..+++||+|++....++.+     ...+++++.|+|||
T Consensus       102 v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~p  181 (275)
T 1iy9_A          102 ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE  181 (275)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred             EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence            33456778899999876532     25689999999865 444467899999976544322     36899999999999


Q ss_pred             CcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ||.+++.......  . ......+.+.+... |..+..
T Consensus       182 gG~lv~~~~~~~~--~-~~~~~~~~~~l~~~-F~~v~~  215 (275)
T 1iy9_A          182 DGIFVAQTDNPWF--T-PELITNVQRDVKEI-FPITKL  215 (275)
T ss_dssp             EEEEEEECCCTTT--C-HHHHHHHHHHHHTT-CSEEEE
T ss_pred             CcEEEEEcCCccc--c-HHHHHHHHHHHHHh-CCCeEE
Confidence            9999987532210  1 12223444444443 665543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.22  E-value=0.00036  Score=58.84  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             cccCceEEEeecCCccChHHHHHHHHHHHHHHh---h----hcCCCeEEEEccCCCCC----------------------
Q 022411            4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDEAV---E----QCDPQIITQASSLSQLP----------------------   54 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~~~~---~----~~~~~v~~~~~d~~~Lp----------------------   54 (297)
                      .+.+.+||-|--|+..-...+...+-.. ...+   .    ....++.++++|+..++                      
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~   98 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNY-KNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL   98 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTS-CEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCC-CceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHH
Confidence            3556778888666554333332221100 0001   0    01246889999998877                      


Q ss_pred             ---CCCCcccEEEeccccCCCC-----h-------HHHHHHHHhcccCCcEEEEEecC
Q 022411           55 ---VESFSIDTVLSISSSHELP-----G-------DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        55 ---~~d~sfD~Vls~~~~~~~~-----~-------~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                         +++.+||+|++....++..     .       ..++.+++|+|||||.|++..+.
T Consensus        99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence               6778999999987766631     1       13788999999999999987654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.21  E-value=0.00026  Score=66.20  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .+.+||-|--|+.             |+..|+++ |.+.|+++++..  ..++.++.+++..++++ ++||+|++....+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY  127 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence            4556777655442             33334553 777777765443  36799999999998876 5799999987655


Q ss_pred             CCC---hHHHHHHHHhcccCCcEEEEE
Q 022411           71 ELP---GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        71 ~~~---~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      ++.   ....+.++.|+|||||.+++.
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            443   357788999999999999854

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.18  E-value=0.00012  Score=67.64  Aligned_cols=90  Identities=13%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhh-----c-CCCeEEEEccCCC-CCCCCCcccEEE
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQ-----C-DPQIITQASSLSQ-LPVESFSIDTVL   64 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~-----~-~~~v~~~~~d~~~-Lp~~d~sfD~Vl   64 (297)
                      ++.+||.|--|+              .++..|+.+.|++.|+++...     . .+++.++.+|+.. ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            345677775443              234557778899999876543     2 5789999999876 454578999999


Q ss_pred             eccccCC---CC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411           65 SISSSHE---LP-----GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        65 s~~~~~~---~~-----~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      +....++   -+     ...+++++.|+|||||.|++..
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9876554   21     3688999999999999999874

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.17  E-value=0.00019  Score=62.39  Aligned_cols=78  Identities=15%  Similarity=0.101  Sum_probs=58.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-CCC--CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p~~--d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|+++.+++.|+++....  ..++.++.+++... +..  +++||+|++....+  ....++.++.++|||||+++
T Consensus        80 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv  157 (233)
T 2gpy_A           80 TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVRPGGLIL  157 (233)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcCCCeEEE
Confidence            3445567788899988876543  24699999998764 433  57899999876543  24678999999999999999


Q ss_pred             EEecC
Q 022411           93 IYKKL   97 (297)
Q Consensus        93 i~~~~   97 (297)
                      +.+..
T Consensus       158 ~~~~~  162 (233)
T 2gpy_A          158 SDNVL  162 (233)
T ss_dssp             EETTT
T ss_pred             EEcCC
Confidence            87643

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.17  E-value=0.00015  Score=62.16  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=57.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ..++..|+++.|++.|+++.+..  ..++.++.+++..+ +..++ ||+|++...  ......++.++.++|||||+|++
T Consensus        82 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~--~~~~~~~l~~~~~~LkpgG~lv~  158 (210)
T 3c3p_A           82 SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD--VFNGADVLERMNRCLAKNALLIA  158 (210)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT--TSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC--hhhhHHHHHHHHHhcCCCeEEEE
Confidence            34556677889999998876543  34699999988643 54456 999998742  12256889999999999999998


Q ss_pred             Eec
Q 022411           94 YKK   96 (297)
Q Consensus        94 ~~~   96 (297)
                      .+.
T Consensus       159 ~~~  161 (210)
T 3c3p_A          159 VNA  161 (210)
T ss_dssp             ESS
T ss_pred             ECc
Confidence            654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.16  E-value=0.00056  Score=62.18  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-----CCCeEEEEccCCCC-CCCCCcccEEEe
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-----DPQIITQASSLSQL-PVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-----~~~v~~~~~d~~~L-p~~d~sfD~Vls   65 (297)
                      ++.+||.|--|.              .++..|+.+.|++.|+++....     .+++.++.+|+... +..+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            455788775543              3345567788999998865432     57899999998653 333678999998


Q ss_pred             ccccCCCC-----hHHHHHHHHhcccCCcEEEEEec
Q 022411           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ....++.+     ...+++++.|+|+|||.+++...
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            65433322     16899999999999999998753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.16  E-value=0.00017  Score=63.66  Aligned_cols=52  Identities=15%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             EEEccCCCCCC-----CCCcccEEEeccccCCCC----------hHHHHHHHHhcccCCcEEEEEec
Q 022411           45 TQASSLSQLPV-----ESFSIDTVLSISSSHELP----------GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        45 ~~~~d~~~Lp~-----~d~sfD~Vls~~~~~~~~----------~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +..+|+.....     ...+||+|+++..++...          ...++.+++++|||||+|++...
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            88999876321     345899999986544332          24899999999999999998544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.12  E-value=7.3e-05  Score=65.42  Aligned_cols=79  Identities=10%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .+.+..-|+.+.|++.++++++.......+..++.... .+...||+|++...+|++. .+..+..+++.|||||.|+-.
T Consensus        73 ~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A           73 KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe
Confidence            33444668999999999998766544323333555433 4578899999999999986 456677999999999999877


Q ss_pred             e
Q 022411           95 K   95 (297)
Q Consensus        95 ~   95 (297)
                      .
T Consensus       152 p  152 (200)
T 3fzg_A          152 P  152 (200)
T ss_dssp             E
T ss_pred             C
Confidence            6

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.11  E-value=0.00038  Score=63.82  Aligned_cols=90  Identities=12%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             CceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhh----c-CCCeEEEEccCCC-CCCCCCcccEEEec
Q 022411            7 QSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQ----C-DPQIITQASSLSQ-LPVESFSIDTVLSI   66 (297)
Q Consensus         7 ~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~----~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~   66 (297)
                      +.+||.|--|+              .++..|+.+.|++.|+++...    . .+++.++.+|+.. ++..+++||+|++.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            45677775543              234557778899998876532    2 5789999999765 44456789999986


Q ss_pred             cccCCCC------hHHHHHHHHhcccCCcEEEEEec
Q 022411           67 SSSHELP------GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        67 ~~~~~~~------~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ...+++.      ...+++++.++|||||.|++...
T Consensus       171 ~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          171 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             C----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            5433221      26889999999999999998743

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.10  E-value=0.00022  Score=66.78  Aligned_cols=76  Identities=18%  Similarity=0.283  Sum_probs=57.2

Q ss_pred             cChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-----hHHHHHHHHhccc
Q 022411           19 LPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLK   86 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLK   86 (297)
                      ++..|+++.|++.|+++...     ...++.++.+|+...  .+++++||+|++.....+.+     ...+++++.|+|+
T Consensus       147 V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lk  226 (334)
T 1xj5_A          147 IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALR  226 (334)
T ss_dssp             EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEE
T ss_pred             EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcC
Confidence            44567888999999887543     256899999998653  23467999999865422211     3689999999999


Q ss_pred             CCcEEEEE
Q 022411           87 PGGTILIY   94 (297)
Q Consensus        87 PGG~l~i~   94 (297)
                      |||.|++.
T Consensus       227 pgG~lv~~  234 (334)
T 1xj5_A          227 PGGVVCTQ  234 (334)
T ss_dssp             EEEEEEEE
T ss_pred             CCcEEEEe
Confidence            99999986

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.10  E-value=0.00016  Score=66.76  Aligned_cols=91  Identities=10%  Similarity=0.129  Sum_probs=64.5

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEe
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls   65 (297)
                      ++.+||.|--|+              .++..|+.+.|++.|+++...     ...++.++.+|+.. ++..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            455777775543              334557778999999886543     25789999999865 4545789999998


Q ss_pred             ccccCCCC-----hHHHHHHHHhcccCCcEEEEEec
Q 022411           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ....++.+     ...+++++.|+|+|||.|++...
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            76543322     25689999999999999998763

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.07  E-value=0.00038  Score=64.68  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhh----c-CCCeEEEEccCCC-CCCCCCcccEEEe
Q 022411            6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQ----C-DPQIITQASSLSQ-LPVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~----~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls   65 (297)
                      ++.+||.|-.|+              .++..|+.+.|++.|+++...    . .+++.++.+|+.. ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            345677775543              344557788999999887543    1 5689999999865 3334678999998


Q ss_pred             ccccCCCC-----hHHHHHHHHhcccCCcEEEEEec
Q 022411           66 ISSSHELP-----GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ....++-+     ...+++++.++|||||.+++...
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            75322211     26899999999999999998754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.06  E-value=0.00038  Score=62.83  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=59.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      |+..|+++.+++.|+++++.. ..++.++.+|+..++. ..+||+|++....   ....++.++.+.|||||.+++....
T Consensus       146 V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~---~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          146 VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH---KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc---cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            445567788999998876543 3578999999988754 6789999988653   3456889999999999999988765


Q ss_pred             C
Q 022411           98 T   98 (297)
Q Consensus        98 ~   98 (297)
                      .
T Consensus       222 ~  222 (272)
T 3a27_A          222 A  222 (272)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.05  E-value=8.8e-05  Score=65.66  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             CCCeEEEEccCCCC---CCCC-CcccEEEeccccCCCChHHHHHHHHh-cccCCcEEEEEec
Q 022411           40 DPQIITQASSLSQL---PVES-FSIDTVLSISSSHELPGDQLLEEISR-VLKPGGTILIYKK   96 (297)
Q Consensus        40 ~~~v~~~~~d~~~L---p~~d-~sfD~Vls~~~~~~~~~~~~L~ei~R-vLKPGG~l~i~~~   96 (297)
                      ..++.++++|+..+   ++.. .+||+|++... | .....++.+++| +|||||+|++.+.
T Consensus       129 ~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          129 MENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCceEEEECcchhHHHHHhhccCCCCEEEECCc-h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            35799999999874   6544 47999998664 3 345678999998 9999999998764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.03  E-value=0.0009  Score=65.02  Aligned_cols=70  Identities=14%  Similarity=-0.019  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhhc---CCCeEEEEccCCCC--CC--CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           28 IRDLGDEAVEQC---DPQIITQASSLSQL--PV--ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        28 m~~~A~~~~~~~---~~~v~~~~~d~~~L--p~--~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      |++.+++++...   ..++.++.++....  ++  ..++||+|+++..++.-....+|.+++|+|||||+|++.+..
T Consensus       285 Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f  361 (433)
T 1u2z_A          285 QYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSL  361 (433)
T ss_dssp             HHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             hHHHHHHHHHHcCCCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence            444447766543   26899988754322  22  357899999875543222567889999999999999987543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.99  E-value=0.0012  Score=59.76  Aligned_cols=106  Identities=10%  Similarity=0.030  Sum_probs=66.4

Q ss_pred             ccChHHH-HHHHHHHHHHHh-----hhcC------CCeEEEEccCCCC--CC----CCCcccEEEeccccCCCC-hHHHH
Q 022411           18 ILPVSAV-LNAIRDLGDEAV-----EQCD------PQIITQASSLSQL--PV----ESFSIDTVLSISSSHELP-GDQLL   78 (297)
Q Consensus        18 ~vt~~dl-se~m~~~A~~~~-----~~~~------~~v~~~~~d~~~L--p~----~d~sfD~Vls~~~~~~~~-~~~~L   78 (297)
                      .|+..|+ ++.|++.|++++     ....      .++.+...+....  .+    ++.+||+|++...+++.+ ...++
T Consensus       104 ~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll  183 (281)
T 3bzb_A          104 QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALL  183 (281)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHH
Confidence            4556677 789999988876     2221      3677775443321  11    367899999977777766 68899


Q ss_pred             HHHHhccc---C--CcEEEEEecCCCCccchHHHHHHHHHHHHHCC-cccccc
Q 022411           79 EEISRVLK---P--GGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQR  125 (297)
Q Consensus        79 ~ei~RvLK---P--GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v~~  125 (297)
                      +++.++|+   |  ||++++.-....  .........+...+..+| |.....
T Consensus       184 ~~l~~~Lk~~~p~~gG~l~v~~~~~~--~~~~~~~~~~~~~l~~~G~f~v~~~  234 (281)
T 3bzb_A          184 RSVKMLLALPANDPTAVALVTFTHHR--PHLAERDLAFFRLVNADGALIAEPW  234 (281)
T ss_dssp             HHHHHHBCCTTTCTTCEEEEEECC----------CTHHHHHHHHSTTEEEEEE
T ss_pred             HHHHHHhcccCCCCCCEEEEEEEeee--cccchhHHHHHHHHHhcCCEEEEEe
Confidence            99999999   9  999876533211  000111124555678899 876543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.95  E-value=0.0017  Score=62.87  Aligned_cols=81  Identities=20%  Similarity=0.161  Sum_probs=59.3

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEecc------ccCCCC-h-------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSIS------SSHELP-G-------------   74 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~------~~~~~~-~-------------   74 (297)
                      .++..|+++.+++.++++++.. ..++.++.+|+..++  +++++||+|++..      .++..+ .             
T Consensus       286 ~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~  365 (450)
T 2yxl_A          286 KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMS  365 (450)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHH
Confidence            3445567788888888877654 347999999998876  6668899999732      122222 1             


Q ss_pred             ---HHHHHHHHhcccCCcEEEEEecCC
Q 022411           75 ---DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        75 ---~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                         ..++.++.++|||||+|++.+...
T Consensus       366 ~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          366 QLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence               468999999999999999887543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.94  E-value=0.00015  Score=62.49  Aligned_cols=78  Identities=21%  Similarity=0.192  Sum_probs=57.6

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-CCC----CcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-VES----FSIDTVLSISSSHELP-GDQLLEEISRVLKP   87 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-~~d----~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP   87 (297)
                      ..++..|+++.|++.|+++.+..  ..++.++.+++... + +..    ++||+|++...   .. ...++.+++++|||
T Consensus        90 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~p  166 (225)
T 3tr6_A           90 GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLRE  166 (225)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCC
Confidence            34556677889999998876544  34599999988543 2 221    78999996543   22 46789999999999


Q ss_pred             CcEEEEEecC
Q 022411           88 GGTILIYKKL   97 (297)
Q Consensus        88 GG~l~i~~~~   97 (297)
                      ||+|++.+..
T Consensus       167 gG~lv~~~~~  176 (225)
T 3tr6_A          167 GGLIAVDNVL  176 (225)
T ss_dssp             EEEEEEECSS
T ss_pred             CcEEEEeCCC
Confidence            9999987654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.92  E-value=0.00014  Score=64.22  Aligned_cols=118  Identities=13%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             CceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC---CCC---CCcccEEE
Q 022411            7 QSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL---PVE---SFSIDTVL   64 (297)
Q Consensus         7 ~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L---p~~---d~sfD~Vl   64 (297)
                      +.+||-|-.|+.              ++..|+++.|++.|++++...  ..++.++.+|+...   +++   +++||+|+
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~  145 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  145 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence            457777765543              233466789999999877554  23599999997652   455   36899999


Q ss_pred             eccccCCCC----------------hHHHHHHHHhcccCCcEEEEEecC---------C-CC----ccchHHHHHHHHHH
Q 022411           65 SISSSHELP----------------GDQLLEEISRVLKPGGTILIYKKL---------T-SD----KGDVDKAISALEGK  114 (297)
Q Consensus        65 s~~~~~~~~----------------~~~~L~ei~RvLKPGG~l~i~~~~---------~-~~----~g~~~~~~~~l~~~  114 (297)
                      ++..+++..                ...++.+++|+|||||.+.+....         . +.    .+. ......+...
T Consensus       146 ~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~  224 (254)
T 2h00_A          146 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGK-KCSLAPLKEE  224 (254)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESS-TTSHHHHHHH
T ss_pred             ECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCC-hhHHHHHHHH
Confidence            986544321                124567788888888877544210         0 00    000 0112356667


Q ss_pred             HHHCCcccccc
Q 022411          115 LLLAGFLDAQR  125 (297)
Q Consensus       115 L~laGFv~v~~  125 (297)
                      +..+||.+++.
T Consensus       225 l~~~Gf~~v~~  235 (254)
T 2h00_A          225 LRIQGVPKVTY  235 (254)
T ss_dssp             HHHTTCSEEEE
T ss_pred             HHHcCCCceEE
Confidence            88889987654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.87  E-value=0.00034  Score=60.17  Aligned_cols=79  Identities=10%  Similarity=0.129  Sum_probs=57.3

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-CC---CCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-VE---SFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-~~---d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      ..++..|+.+.|++.|+++....  ..++.++.+++... + ++   ..+||+|++.....+  ...++.++.++|||||
T Consensus        84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~--~~~~l~~~~~~L~pgG  161 (223)
T 3duw_A           84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN--NPAYFEWALKLSRPGT  161 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG--HHHHHHHHHHTCCTTC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH--HHHHHHHHHHhcCCCc
Confidence            34556678889999998876543  34699999988643 2 21   167999998654221  3578999999999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      .+++.+..
T Consensus       162 ~lv~~~~~  169 (223)
T 3duw_A          162 VIIGDNVV  169 (223)
T ss_dssp             EEEEESCS
T ss_pred             EEEEeCCC
Confidence            99887654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.85  E-value=0.00043  Score=62.42  Aligned_cols=80  Identities=9%  Similarity=0.059  Sum_probs=59.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC----CCCcccEEEeccccCC------------------CC-
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV----ESFSIDTVLSISSSHE------------------LP-   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~----~d~sfD~Vls~~~~~~------------------~~-   73 (297)
                      .++..|+++.+++.++++++.. ..++.++.+|+..++.    ..++||+|++......                  .. 
T Consensus       110 ~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~  189 (274)
T 3ajd_A          110 TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLR  189 (274)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHH
Confidence            4455677788889888877654 3489999999987765    2678999998732211                  02 


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...++.+++++|||||+|++....
T Consensus       190 ~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          190 QKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEECC
Confidence            367899999999999999987654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.84  E-value=0.00037  Score=64.33  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=62.2

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEE-EccCCCCC---CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQ-ASSLSQLP---VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~-~~d~~~Lp---~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .|+..|+++.|++++.++    ++++... ..++..++   ++..+||+|++..+++++  ..+|.+++|+|||||+|++
T Consensus       110 ~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl--~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          110 LVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL--NLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             EEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEE
T ss_pred             EEEEEECCHHHHHHHHHh----CcccceecccCceecchhhCCCCCCCEEEEEeeHhhH--HHHHHHHHHHcCcCCEEEE
Confidence            344557777777775332    2233322 22333332   345579999998777654  5789999999999999988


Q ss_pred             Ee---cCCC--C---ccc---hH---HHHHHHHHHHHHCCccccc
Q 022411           94 YK---KLTS--D---KGD---VD---KAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        94 ~~---~~~~--~---~g~---~~---~~~~~l~~~L~laGFv~v~  124 (297)
                      ..   +..+  .   .|.   +.   ...+++...+..+||....
T Consensus       184 lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~  228 (291)
T 3hp7_A          184 LVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG  228 (291)
T ss_dssp             EECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            72   2111  0   111   11   2345677788999998654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.83  E-value=0.00074  Score=63.07  Aligned_cols=103  Identities=10%  Similarity=0.015  Sum_probs=66.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC-C--CeEEEEccCCCCCCC----CCcccEEEecccc----------CCCC-hHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD-P--QIITQASSLSQLPVE----SFSIDTVLSISSS----------HELP-GDQLLE   79 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~-~--~v~~~~~d~~~Lp~~----d~sfD~Vls~~~~----------~~~~-~~~~L~   79 (297)
                      .|+..|+++.|++.|+++++... .  ++.++++|+..+...    ..+||+|++....          ++.. ...++.
T Consensus       177 ~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~  256 (332)
T 2igt_A          177 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  256 (332)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence            45566888999999998765432 2  489999998765321    5689999995431          1122 357899


Q ss_pred             HHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           80 EISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        80 ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ++.++|||||.|++........ ........+...+..+|+.
T Consensus       257 ~~~~~LkpgG~lli~~~~~~~~-~~~~~~~~l~~a~~~~g~~  297 (332)
T 2igt_A          257 ICREILSPKALGLVLTAYSIRA-SFYSMHELMRETMRGAGGV  297 (332)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTS-CHHHHHHHHHHHTTTSCSE
T ss_pred             HHHHhcCcCcEEEEEECCCCCC-CHHHHHHHHHHHHHHcCCe
Confidence            9999999999988776543221 1111112333345567775

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.83  E-value=0.0014  Score=61.77  Aligned_cols=96  Identities=14%  Similarity=-0.013  Sum_probs=69.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---------hHHHHHHHHhccc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP---------GDQLLEEISRVLK   86 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLK   86 (297)
                      .++..|+++.|++.|++++....  .++.+.++|+..+|+++++||+|+++..+....         ...++.++.|+| 
T Consensus       243 ~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-  321 (373)
T 3tm4_A          243 EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-  321 (373)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-
T ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-
Confidence            45566888999999998876543  479999999999998889999999986544211         156788889988 


Q ss_pred             CCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           87 PGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        87 PGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                       +|.+++.....          ..+.+.+...||.....
T Consensus       322 -~g~~~~i~~~~----------~~~~~~~~~~G~~~~~~  349 (373)
T 3tm4_A          322 -EKRGVFITTEK----------KAIEEAIAENGFEIIHH  349 (373)
T ss_dssp             -EEEEEEEESCH----------HHHHHHHHHTTEEEEEE
T ss_pred             -CCeEEEEECCH----------HHHHHHHHHcCCEEEEE
Confidence             56655554321          14556777889986553

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.82  E-value=0.0025  Score=60.38  Aligned_cols=78  Identities=12%  Similarity=0.122  Sum_probs=54.4

Q ss_pred             ccCCCCCCCCCcccEEEeccccCCCC--hH--------------------------------HHHHHHHhcccCCcEEEE
Q 022411           48 SSLSQLPVESFSIDTVLSISSSHELP--GD--------------------------------QLLEEISRVLKPGGTILI   93 (297)
Q Consensus        48 ~d~~~Lp~~d~sfD~Vls~~~~~~~~--~~--------------------------------~~L~ei~RvLKPGG~l~i   93 (297)
                      ++...-.|++++||+|+|++++||+.  +.                                .+|+-.++.|+|||++++
T Consensus       128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            45555679999999999999999986  21                                127788999999999999


Q ss_pred             EecCCCCccc-------hHHHHHHHHHHHHHCCcccccc
Q 022411           94 YKKLTSDKGD-------VDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        94 ~~~~~~~~g~-------~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ...+.++...       +-..+...-+.+..-|.++.+.
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek  246 (359)
T 1m6e_X          208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEK  246 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCST
T ss_pred             EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhh
Confidence            9876544321       1122233334567778876543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.81  E-value=0.00096  Score=63.62  Aligned_cols=53  Identities=21%  Similarity=0.192  Sum_probs=42.4

Q ss_pred             ccCCCCCCCCCcccEEEeccccCCCC--hH-------------------------------------HHHHHHHhcccCC
Q 022411           48 SSLSQLPVESFSIDTVLSISSSHELP--GD-------------------------------------QLLEEISRVLKPG   88 (297)
Q Consensus        48 ~d~~~Lp~~d~sfD~Vls~~~~~~~~--~~-------------------------------------~~L~ei~RvLKPG   88 (297)
                      ++...-.||+++||+|+|++++||+.  +.                                     .+|+..+|.|+||
T Consensus       139 gSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pG  218 (374)
T 3b5i_A          139 GSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRG  218 (374)
T ss_dssp             SCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34444568899999999999999986  32                                     2477889999999


Q ss_pred             cEEEEEecCCCC
Q 022411           89 GTILIYKKLTSD  100 (297)
Q Consensus        89 G~l~i~~~~~~~  100 (297)
                      |++++...+..+
T Consensus       219 G~mvl~~~gr~~  230 (374)
T 3b5i_A          219 GAMFLVCLGRTS  230 (374)
T ss_dssp             EEEEEEEEECCC
T ss_pred             CEEEEEEecCCC
Confidence            999999876543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.81  E-value=0.00049  Score=67.52  Aligned_cols=73  Identities=12%  Similarity=0.172  Sum_probs=55.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCC-C--hHHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHEL-P--GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~-~--~~~~L~ei~RvLKPGG~l~i   93 (297)
                      |+..|+++ |++.|++++...  ..++.++.+++..++++ +.||+|++....+++ .  ....+.++.|+|||||++++
T Consensus       184 V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          184 IYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            44557777 888888776543  35799999999988776 589999998654433 2  34567788999999999985

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.80  E-value=0.00042  Score=61.66  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-C-----CCCcccEEEeccccCCCChHHHHHHHHhcccC
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPGDQLLEEISRVLKP   87 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-~-----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKP   87 (297)
                      ..++..|+++.|++.|+++.+..  ..++.++.+++..+ + +     ++++||+|++.....  ....++.+++++|||
T Consensus       105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~Lkp  182 (247)
T 1sui_A          105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLIDLVKV  182 (247)
T ss_dssp             CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHHHBCT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHHhCCC
Confidence            34455567788999998876554  34799999988643 3 2     267899999865321  246789999999999


Q ss_pred             CcEEEEEec
Q 022411           88 GGTILIYKK   96 (297)
Q Consensus        88 GG~l~i~~~   96 (297)
                      ||.|++.+.
T Consensus       183 GG~lv~d~~  191 (247)
T 1sui_A          183 GGVIGYDNT  191 (247)
T ss_dssp             TCCEEEECT
T ss_pred             CeEEEEecC
Confidence            999998763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.79  E-value=0.00088  Score=64.14  Aligned_cols=76  Identities=18%  Similarity=0.145  Sum_probs=50.5

Q ss_pred             cCCCCCCCCCcccEEEeccccCCCC--hHH-----------------------H---------------HHHHHhcccCC
Q 022411           49 SLSQLPVESFSIDTVLSISSSHELP--GDQ-----------------------L---------------LEEISRVLKPG   88 (297)
Q Consensus        49 d~~~Lp~~d~sfD~Vls~~~~~~~~--~~~-----------------------~---------------L~ei~RvLKPG   88 (297)
                      +...-.|++++||+|+|++++||+.  +..                       +               |+-.+|.|+||
T Consensus       139 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pG  218 (384)
T 2efj_A          139 SFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISR  218 (384)
T ss_dssp             CTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4444578999999999999999986  211                       2               44448999999


Q ss_pred             cEEEEEecCCCCc--cchH-HHHHHHHHHHHHCCccccc
Q 022411           89 GTILIYKKLTSDK--GDVD-KAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        89 G~l~i~~~~~~~~--g~~~-~~~~~l~~~L~laGFv~v~  124 (297)
                      |++++...+.++.  .... .......+.+..-|.++.+
T Consensus       219 G~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~e  257 (384)
T 2efj_A          219 GRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEE  257 (384)
T ss_dssp             EEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHH
T ss_pred             CeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchh
Confidence            9999998876554  2110 0222333455556766544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.70  E-value=0.0018  Score=54.18  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=42.9

Q ss_pred             CCeEEE-EccCCCCC--------CCCCcccEEEeccccCC----CC-h-------HHHHHHHHhcccCCcEEEEEecCC
Q 022411           41 PQIITQ-ASSLSQLP--------VESFSIDTVLSISSSHE----LP-G-------DQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        41 ~~v~~~-~~d~~~Lp--------~~d~sfD~Vls~~~~~~----~~-~-------~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      .++.++ .+++...+        +++++||+|++....++    .. .       ..++.+++|+|||||+|++..+..
T Consensus        70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           70 EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            457888 88876653        34678999999664432    12 1       378999999999999999987653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.65  E-value=0.0026  Score=59.07  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h------------------HHHHHHH
Q 022411           21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G------------------DQLLEEI   81 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~------------------~~~L~ei   81 (297)
                      ..|+.+.+.+.|+.++.....++.+..+|.... .....||+|+++..+++++ .                  ..++.++
T Consensus       164 GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~  242 (344)
T 2f8l_A          164 GVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQG  242 (344)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHH
Confidence            445567788888876654444688889887653 3467899999997765543 1                  1579999


Q ss_pred             HhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           82 SRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        82 ~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      .+.|||||++++..+..--.+.   ....+++.+...|++.
T Consensus       243 ~~~Lk~gG~~~~v~p~~~~~~~---~~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          243 MRYTKPGGYLFFLVPDAMFGTS---DFAKVDKFIKKNGHIE  280 (344)
T ss_dssp             HHTEEEEEEEEEEEEGGGGGST---THHHHHHHHHHHEEEE
T ss_pred             HHHhCCCCEEEEEECchhcCCc---hHHHHHHHHHhCCeEE
Confidence            9999999999888754210011   1236677777778764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.65  E-value=0.00072  Score=59.21  Aligned_cols=78  Identities=12%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC----CCCCC--CcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ----LPVES--FSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~----Lp~~d--~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      .++..|+++.+++.|+++.+..  ..++.++.+++..    ++..+  ++||+|++.....  ....++.++.++|+|||
T Consensus        99 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpgG  176 (232)
T 3cbg_A           99 QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR--NYPRYYEIGLNLLRRGG  176 (232)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG--GHHHHHHHHHHTEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH--HHHHHHHHHHHHcCCCe
Confidence            3445677788999988776443  2469999998643    33334  7899999865321  14678999999999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      .|++.+..
T Consensus       177 ~lv~~~~~  184 (232)
T 3cbg_A          177 LMVIDNVL  184 (232)
T ss_dssp             EEEEECTT
T ss_pred             EEEEeCCC
Confidence            99987654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.65  E-value=0.00063  Score=61.74  Aligned_cols=89  Identities=8%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             cCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhh----h-------cCCCeEEEEccCCCC-CCCCCcc
Q 022411            6 MQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVE----Q-------CDPQIITQASSLSQL-PVESFSI   60 (297)
Q Consensus         6 ~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~----~-------~~~~v~~~~~d~~~L-p~~d~sf   60 (297)
                      ++.+||.|--|+             .++..|+.+.|++.|+++..    .       ..+++.++.+|+... +. +++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence            345777775543             34455777889999987651    1       246799999987642 33 6789


Q ss_pred             cEEEeccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411           61 DTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        61 D~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      |+|++....++.+     ...+++++.++|+|||.+++..
T Consensus       154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999876543221     2678999999999999999874

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.61  E-value=0.0008  Score=60.73  Aligned_cols=84  Identities=14%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.+||.+-.|+            .++..|+.+.|++.|+++...     ..+++.++.+|+....   ++||+|++...
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~~  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQE  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESSC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECCC
Confidence            345677776553            344556778899988765422     2568999999988764   78999998742


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                          .+..+++++.|+|||||.|++...
T Consensus       149 ----dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          149 ----PDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             ----CCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ----ChHHHHHHHHHhcCCCcEEEEEcC
Confidence                234589999999999999998743

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.60  E-value=9.5e-05  Score=65.71  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-CCC-----CCcccEEEeccccCCCChHHHHHHHHhcccCCcE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVE-----SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT   90 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p~~-----d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~   90 (297)
                      ++..|+++.|++.|+++.+..  ..++.++.+++..+ +..     +++||+|++.....  ....++.+++++|||||.
T Consensus        88 v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG~  165 (242)
T 3r3h_A           88 VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT--NYLNYYELALKLVTPKGL  165 (242)
T ss_dssp             EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG--GHHHHHHHHHHHEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH--HhHHHHHHHHHhcCCCeE
Confidence            334455667777777766543  35799999998654 321     57899999875311  145789999999999999


Q ss_pred             EEEEecC
Q 022411           91 ILIYKKL   97 (297)
Q Consensus        91 l~i~~~~   97 (297)
                      |++.+..
T Consensus       166 lv~d~~~  172 (242)
T 3r3h_A          166 IAIDNIF  172 (242)
T ss_dssp             EEEECSS
T ss_pred             EEEECCc
Confidence            9997654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.53  E-value=0.0022  Score=61.08  Aligned_cols=85  Identities=16%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc--
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS--   68 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~--   68 (297)
                      .|.+||-|--|+.             |...+.+ .|.+.|++.++..  ..+|.++.++++.+.++ ..||+|++-..  
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~  160 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY  160 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence            3667888866553             2222333 3677777655432  45799999999998877 67999998542  


Q ss_pred             -cCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           69 -SHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        69 -~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                       +.+-. ...++....|.|||||.++
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchhhhHHHHHHhhCCCCceEC
Confidence             33332 5788888999999999986

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.52  E-value=0.00014  Score=64.49  Aligned_cols=100  Identities=16%  Similarity=0.098  Sum_probs=57.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc----CCCeEEEE-ccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC----DPQIITQA-SSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~----~~~v~~~~-~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~   92 (297)
                      .|+..|+++.|++.|+++....    ..++.+.. .++...+++..+||++++..       ..++.+++|+|||||+|+
T Consensus        62 ~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv  134 (232)
T 3opn_A           62 LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL-------DLILPPLYEILEKNGEVA  134 (232)
T ss_dssp             EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEE
T ss_pred             EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEE
Confidence            4455677777888776543221    12333333 33332223445666665442       578999999999999998


Q ss_pred             EEecC---CCC-----cc---chH---HHHHHHHHHHHHCCccccc
Q 022411           93 IYKKL---TSD-----KG---DVD---KAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        93 i~~~~---~~~-----~g---~~~---~~~~~l~~~L~laGFv~v~  124 (297)
                      +....   ...     .+   ...   ...+++...+..+||....
T Consensus       135 ~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~  180 (232)
T 3opn_A          135 ALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG  180 (232)
T ss_dssp             EEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred             EEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence            86311   100     00   011   2345777888999998654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.51  E-value=0.0032  Score=57.26  Aligned_cols=76  Identities=14%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcc---cEEEeccccC-----------CCCh-------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSI---DTVLSISSSH-----------ELPG-------   74 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sf---D~Vls~~~~~-----------~~~~-------   74 (297)
                      .++..|+++.+++.|++++....  .++.++++|+.. +++ ++|   |+|+++..+.           |.+.       
T Consensus       148 ~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~  225 (284)
T 1nv8_A          148 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGE  225 (284)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCC
Confidence            44566888999999998876542  259999999976 233 579   9999984221           2221       


Q ss_pred             --HHHHHHHH-hcccCCcEEEEEe
Q 022411           75 --DQLLEEIS-RVLKPGGTILIYK   95 (297)
Q Consensus        75 --~~~L~ei~-RvLKPGG~l~i~~   95 (297)
                        ..+++++. +.|+|||.|++..
T Consensus       226 dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          226 DGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             TSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cHHHHHHHHHHhcCCCCCEEEEEE
Confidence              26899999 9999999999753

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.48  E-value=0.0031  Score=61.84  Aligned_cols=80  Identities=11%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC-CCCcccEEEeccc------cCC-------CC---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISS------SHE-------LP---------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~------~~~-------~~---------   73 (297)
                      .|+..|+++.|++.++++++.. ..++.++.+|+..++. .+++||+|++...      ++.       +.         
T Consensus       144 ~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~  223 (479)
T 2frx_A          144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAA  223 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHH
Confidence            3445577889999998887654 3479999999988764 5678999998321      111       11         


Q ss_pred             -hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 -GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 -~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       ...+|.+++++|||||+|++.+-.
T Consensus       224 ~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          224 TQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccc
Confidence             136789999999999999987654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.40  E-value=0.00078  Score=58.05  Aligned_cols=78  Identities=15%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC--CCCC----CcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL--PVES----FSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L--p~~d----~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      .++..|+++.|++.|+++.+..  ..++.++.+++...  .+.+    ++||+|++.....  ....++.++.++|+|||
T Consensus        96 ~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~--~~~~~l~~~~~~L~pgG  173 (229)
T 2avd_A           96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKE--NCSAYYERCLQLLRPGG  173 (229)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST--THHHHHHHHHHHEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH--HHHHHHHHHHHHcCCCe
Confidence            3445566788888888876543  35799999987543  1222    7899999865311  24678999999999999


Q ss_pred             EEEEEecC
Q 022411           90 TILIYKKL   97 (297)
Q Consensus        90 ~l~i~~~~   97 (297)
                      .+++.+..
T Consensus       174 ~lv~~~~~  181 (229)
T 2avd_A          174 ILAVLRVL  181 (229)
T ss_dssp             EEEEECCS
T ss_pred             EEEEECCC
Confidence            99987643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=96.38  E-value=0.0081  Score=53.46  Aligned_cols=114  Identities=14%  Similarity=0.012  Sum_probs=80.0

Q ss_pred             ccccCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEec
Q 022411            3 TGKMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSI   66 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~   66 (297)
                      .++.|.+||-+-.|+.              |..-|+.+.+++.|+++++..  ..++.++.+|+.....++..||+|+..
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence            4556667777644332              234588889999999887654  346999999998776555589998753


Q ss_pred             cccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        67 ~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      -..-. ....++.+..+.|+++|+|++.....         ...+++.|..+||.-++..
T Consensus        98 GmGg~-lI~~IL~~~~~~l~~~~~lIlqp~~~---------~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           98 GMGGR-LIADILNNDIDKLQHVKTLVLQPNNR---------EDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             EECHH-HHHHHHHHTGGGGTTCCEEEEEESSC---------HHHHHHHHHHTTEEEEEEE
T ss_pred             CCchH-HHHHHHHHHHHHhCcCCEEEEECCCC---------hHHHHHHHHHCCCEEEEEE
Confidence            21110 12467888899999999999876432         2367888999999977654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.38  E-value=0.0015  Score=62.74  Aligned_cols=79  Identities=13%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC--CCCCcccEEEeccc------cCCCCh----------------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS------SHELPG----------------   74 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~------~~~~~~----------------   74 (297)
                      ++..|+++.+++.+++++.....++.++.+|+..++  +++++||+|++...      ++..+.                
T Consensus       273 v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~  352 (429)
T 1sqg_A          273 VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL  352 (429)
T ss_dssp             EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHH
Confidence            334455667788888776655556889999998876  66789999997421      122221                


Q ss_pred             -HHHHHHHHhcccCCcEEEEEecC
Q 022411           75 -DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        75 -~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                       ..++.++++.|||||+|++.+-.
T Consensus       353 q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          353 QSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECC
Confidence             37899999999999999988743

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.36  E-value=0.007  Score=54.62  Aligned_cols=53  Identities=13%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             CeEEE--EccCCCCCCCCCcccEEEeccccCCCC-h----H---HHHHHHHhcccCCc--EEEEEecC
Q 022411           42 QIITQ--ASSLSQLPVESFSIDTVLSISSSHELP-G----D---QLLEEISRVLKPGG--TILIYKKL   97 (297)
Q Consensus        42 ~v~~~--~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~----~---~~L~ei~RvLKPGG--~l~i~~~~   97 (297)
                      ++.++  ++|+..+|  +++||+|++... ++.. .    .   .+|.++.|+|||||  .|++..+.
T Consensus       123 ~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          123 NIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             GGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            68888  88998876  789999999876 3322 1    1   37899999999999  99987765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.33  E-value=0.0066  Score=55.15  Aligned_cols=53  Identities=25%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             CeEEE--EccCCCCCCCCCcccEEEeccccCCCC-h----H---HHHHHHHhcccCCc--EEEEEecC
Q 022411           42 QIITQ--ASSLSQLPVESFSIDTVLSISSSHELP-G----D---QLLEEISRVLKPGG--TILIYKKL   97 (297)
Q Consensus        42 ~v~~~--~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~----~---~~L~ei~RvLKPGG--~l~i~~~~   97 (297)
                      ++.++  ++|+..+|  +++||+|++... ++.. .    .   .+|.++.|+|||||  .|++..+.
T Consensus       131 ~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          131 NLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             GGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            68889  89998876  789999999876 3322 1    1   37899999999999  99987765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.33  E-value=0.00047  Score=68.82  Aligned_cols=83  Identities=10%  Similarity=0.033  Sum_probs=67.6

Q ss_pred             cCCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCC
Q 022411           15 EDKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPG   88 (297)
Q Consensus        15 ~~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPG   88 (297)
                      .|+.|+..|+++.+++.|+..+.+. ..+|.|++++++.+  ++.+++||+|++.-.++|++ +  -..+..+++.|+++
T Consensus        87 ~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~  166 (569)
T 4azs_A           87 KGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADV  166 (569)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccc
Confidence            3777888899999999999876554 36899999999988  56788999999999999987 3  23456788889999


Q ss_pred             cEEEEEecC
Q 022411           89 GTILIYKKL   97 (297)
Q Consensus        89 G~l~i~~~~   97 (297)
                      |+.++....
T Consensus       167 ~~~~~~~~~  175 (569)
T 4azs_A          167 TQAVILELA  175 (569)
T ss_dssp             SSEEEEECC
T ss_pred             cceeeEEec
Confidence            998877654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.31  E-value=0.016  Score=48.90  Aligned_cols=92  Identities=11%  Similarity=0.002  Sum_probs=64.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++..|+++.|++.++++......++.++.+|+..+|   .+||+|+++..+++..   ...++.++.++|  ||.+ +..
T Consensus        75 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~-~~~  148 (207)
T 1wy7_A           75 VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVY-SIH  148 (207)
T ss_dssp             EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEE-EEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEE-EEE
Confidence            455677889999998876554448999999999875   4899999998877654   367899999999  5544 433


Q ss_pred             cCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           96 KLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ...      ....+.+.+.+...||.-
T Consensus       149 ~~~------~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          149 LAK------PEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             ECC------HHHHHHHHHHHHHTTEEE
T ss_pred             eCC------cCCHHHHHHHHHHCCCeE
Confidence            211      112234556677889864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.30  E-value=0.0011  Score=57.86  Aligned_cols=76  Identities=17%  Similarity=0.197  Sum_probs=54.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC--------------CCC--CcccEEEeccccCCCChHHHHH
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP--------------VES--FSIDTVLSISSSHELPGDQLLE   79 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp--------------~~d--~sfD~Vls~~~~~~~~~~~~L~   79 (297)
                      ++..|.++.+++.|+++....  ..++.++.+++.. ++              |++  ++||+|++......  ...++.
T Consensus        88 v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~~l~  165 (239)
T 2hnk_A           88 ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPNYYP  165 (239)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHHHHH
Confidence            344566688888888776543  2348999988754 22              222  78999998753222  357899


Q ss_pred             HHHhcccCCcEEEEEec
Q 022411           80 EISRVLKPGGTILIYKK   96 (297)
Q Consensus        80 ei~RvLKPGG~l~i~~~   96 (297)
                      ++.++|||||+|++.+.
T Consensus       166 ~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          166 LILKLLKPGGLLIADNV  182 (239)
T ss_dssp             HHHHHEEEEEEEEEECS
T ss_pred             HHHHHcCCCeEEEEEcc
Confidence            99999999999998763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.28  E-value=0.0012  Score=58.04  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=55.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-C-----CCCcccEEEeccccCCCChHHHHHHHHhcccCC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-V-----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPG   88 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-~-----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG   88 (297)
                      .++..|+.+.+++.|+++.+..  ..++.++.+++..+ + +     ++++||+|++.....  .....+.++.++||||
T Consensus        97 ~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~~L~pG  174 (237)
T 3c3y_A           97 KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMKLVKVG  174 (237)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHHHEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHHhcCCC
Confidence            3344466788999998876544  23699999988643 3 2     257899999864211  1467899999999999


Q ss_pred             cEEEEEec
Q 022411           89 GTILIYKK   96 (297)
Q Consensus        89 G~l~i~~~   96 (297)
                      |.+++.+.
T Consensus       175 G~lv~d~~  182 (237)
T 3c3y_A          175 GIVAYDNT  182 (237)
T ss_dssp             EEEEEECT
T ss_pred             eEEEEecC
Confidence            99988764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.17  E-value=0.0038  Score=52.69  Aligned_cols=66  Identities=6%  Similarity=-0.036  Sum_probs=48.9

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ++..|+++.|++.|+++..    ++.++.+|+..+|   ++||+|+++..+|++.   ...+++++.++|  |+.+++
T Consensus        77 v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~  145 (200)
T 1ne2_A           77 VTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSI  145 (200)
T ss_dssp             EEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEE
T ss_pred             EEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEE
Confidence            4456778889998887654    7899999998875   6899999999888875   357899999999  443333

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.07  E-value=0.0056  Score=58.00  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=66.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCC---CeEEEEccCCCCCC----CCCcccEEEeccccC---------CCC-hHHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDP---QIITQASSLSQLPV----ESFSIDTVLSISSSH---------ELP-GDQLLEE   80 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~---~v~~~~~d~~~Lp~----~d~sfD~Vls~~~~~---------~~~-~~~~L~e   80 (297)
                      .|+..|+++.+++.|+++++....   ++.++.+|+..+..    ....||+|++.....         ... ...++.+
T Consensus       245 ~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~  324 (396)
T 3c0k_A          245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML  324 (396)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHH
Confidence            344567888999999887754432   79999999876521    146899999975321         112 3678899


Q ss_pred             HHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022411           81 ISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (297)
Q Consensus        81 i~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF  120 (297)
                      +.+.|+|||.+++.......  ..+.-...+...+..+|+
T Consensus       325 ~~~~LkpgG~l~~~~~~~~~--~~~~~~~~i~~~~~~~g~  362 (396)
T 3c0k_A          325 AIQLLNEGGILLTFSCSGLM--TSDLFQKIIADAAIDAGR  362 (396)
T ss_dssp             HHHTEEEEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCCcEEEEEeCCCcC--CHHHHHHHHHHHHHHcCC
Confidence            99999999999988754321  111112234445666664

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.04  E-value=0.0051  Score=58.22  Aligned_cols=81  Identities=9%  Similarity=-0.102  Sum_probs=58.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCC----CCCcccEEEeccccCCC---------C-hHHHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPV----ESFSIDTVLSISSSHEL---------P-GDQLLEEI   81 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~----~d~sfD~Vls~~~~~~~---------~-~~~~L~ei   81 (297)
                      .|+..|+++.+++.|++++....  .++.++.+|+..+..    ...+||+|++.......         . ...++.++
T Consensus       242 ~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~  321 (396)
T 2as0_A          242 EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAG  321 (396)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            35566788899999988765432  279999999876532    25789999996533211         1 35688999


Q ss_pred             HhcccCCcEEEEEecCC
Q 022411           82 SRVLKPGGTILIYKKLT   98 (297)
Q Consensus        82 ~RvLKPGG~l~i~~~~~   98 (297)
                      .++|+|||.|++.....
T Consensus       322 ~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          322 LNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             HTTEEEEEEEEEEECCT
T ss_pred             HHhcCCCcEEEEEECCC
Confidence            99999999998887543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.04  E-value=0.0017  Score=63.50  Aligned_cols=80  Identities=20%  Similarity=0.138  Sum_probs=58.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC-CCCCcccEEEeccc------cCCCC-----------------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISS------SHELP-----------------   73 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~------~~~~~-----------------   73 (297)
                      .|+..|+++.|++.++++++.....+.++.+|+..++ +.+++||+|++...      ++..+                 
T Consensus       128 ~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~  207 (464)
T 3m6w_A          128 LLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEV  207 (464)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHH
Confidence            3445578889999999887665333889999988776 34689999996321      11111                 


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...+|.+++++|||||+|++.+-.
T Consensus       208 Q~~iL~~a~~~LkpGG~LvysTCs  231 (464)
T 3m6w_A          208 QKALLAQASRLLGPGGVLVYSTCT  231 (464)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEecc
Confidence            156899999999999999987643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.00  E-value=0.0049  Score=60.15  Aligned_cols=100  Identities=11%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-CCCCcccEEEeccc---cCCC-----------C---------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISS---SHEL-----------P---------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~---~~~~-----------~---------   73 (297)
                      |+..|+++.+++.++++++.. ..++.++.+|+..++ +.+++||+|++...   ...+           +         
T Consensus       133 V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~  212 (456)
T 3m4x_A          133 LVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKR  212 (456)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHH
Confidence            345577888899988887654 457899999988765 34679999998542   1111           0         


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ...+|.++.++|||||+|++.+-.-...++ ..   .+...+...||.-
T Consensus       213 Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn-e~---vv~~~l~~~~~~l  257 (456)
T 3m4x_A          213 QQEILSSAIKMLKNKGQLIYSTCTFAPEEN-EE---IISWLVENYPVTI  257 (456)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEESCCCGGGT-HH---HHHHHHHHSSEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEeecccccC-HH---HHHHHHHhCCCEE
Confidence            126799999999999999887643221111 11   3444556667543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.97  E-value=0.0069  Score=57.14  Aligned_cols=80  Identities=11%  Similarity=-0.005  Sum_probs=57.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC----CCCcccEEEeccccCCC---------C-hHHHHHHHHh
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV----ESFSIDTVLSISSSHEL---------P-GDQLLEEISR   83 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~----~d~sfD~Vls~~~~~~~---------~-~~~~L~ei~R   83 (297)
                      |+..|+++.+++.|+++++.. ..++.++.+|+..+..    ...+||+|++.......         . ...++.++.+
T Consensus       234 v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~  313 (382)
T 1wxx_A          234 VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIK  313 (382)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            345577889999998876543 3459999999876532    15789999986532211         1 2568889999


Q ss_pred             cccCCcEEEEEecCC
Q 022411           84 VLKPGGTILIYKKLT   98 (297)
Q Consensus        84 vLKPGG~l~i~~~~~   98 (297)
                      +|+|||.|++.....
T Consensus       314 ~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          314 LLKEGGILATASCSH  328 (382)
T ss_dssp             TEEEEEEEEEEECCT
T ss_pred             hcCCCCEEEEEECCC
Confidence            999999999887653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.94  E-value=0.0022  Score=58.22  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             cCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.+||-+--|+.            ++..|+.+.|++.++++....  ..++.++.+|+..++++  +||+|+++..+++
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~  105 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLPYQI  105 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECCGGG
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecCccc
Confidence            4566776655433            334467788999988776433  25799999999988766  7999999877665


Q ss_pred             CCh--HHHH--------------HHH--HhcccCCcEEE
Q 022411           72 LPG--DQLL--------------EEI--SRVLKPGGTIL   92 (297)
Q Consensus        72 ~~~--~~~L--------------~ei--~RvLKPGG~l~   92 (297)
                      ..+  ..++              +|+  .++|+|||+++
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A          106 SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            431  2222              233  36999999986

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.87  E-value=0.0087  Score=55.11  Aligned_cols=56  Identities=13%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             CCeEEEEc-cCCCCCCCCCcccEEEeccccC---CCC-hH---HHHHHHHhcccCCcEEEEEecCC
Q 022411           41 PQIITQAS-SLSQLPVESFSIDTVLSISSSH---ELP-GD---QLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        41 ~~v~~~~~-d~~~Lp~~d~sfD~Vls~~~~~---~~~-~~---~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      .++.++++ |+..+|  ..+||+|++....+   +.. ..   .+|.++.|+|||||.|++..+..
T Consensus       131 ~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          131 NLVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             GGEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46888888 887765  67999999976543   221 11   47889999999999999876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=95.87  E-value=0.017  Score=51.87  Aligned_cols=114  Identities=12%  Similarity=0.043  Sum_probs=78.8

Q ss_pred             ccccCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEec
Q 022411            3 TGKMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSI   66 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~   66 (297)
                      .++.|.+||-+-.|+.              |..-|+.+.+++.|+++++..  ..+|.++.+|+.....++..||+|++.
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence            4556667777644332              234588889999999887654  346999999988765554569998764


Q ss_pred             cccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        67 ~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      -..-. ....++.+..+.|+++|+|++.-...         ...+++.|..+||.-++..
T Consensus        98 gmGg~-lI~~IL~~~~~~L~~~~~lIlq~~~~---------~~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           98 GMGGT-LIRTILEEGAAKLAGVTKLILQPNIA---------AWQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             EECHH-HHHHHHHHTGGGGTTCCEEEEEESSC---------HHHHHHHHHHHTEEEEEEE
T ss_pred             CCchH-HHHHHHHHHHHHhCCCCEEEEEcCCC---------hHHHHHHHHHCCCEEEEEE
Confidence            21110 02467888899999999999876431         1267788999999976544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=95.83  E-value=0.0035  Score=59.47  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--C-CeEEEEccCCC-CCC---CCCcccEEEecccc-----CCCC-h----HHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--P-QIITQASSLSQ-LPV---ESFSIDTVLSISSS-----HELP-G----DQLLEE   80 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~-~v~~~~~d~~~-Lp~---~d~sfD~Vls~~~~-----~~~~-~----~~~L~e   80 (297)
                      .|+..|+++.|++.|+++++...  . ++.++.+|+.. ++.   ...+||+|++....     .... .    ..++.+
T Consensus       237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~  316 (385)
T 2b78_A          237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQ  316 (385)
T ss_dssp             EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHH
Confidence            34566788899999998875432  2 79999999865 331   24589999986543     1222 2    346778


Q ss_pred             HHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           81 ISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        81 i~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      +.++|+|||.|++.......  ..+.-...+...+..+|+.
T Consensus       317 ~~~~L~pgG~l~~~~~~~~~--~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          317 GLEILSENGLIIASTNAANM--TVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             HHHTEEEEEEEEEEECCTTS--CHHHHHHHHHHHHTTCCCE
T ss_pred             HHHhcCCCcEEEEEeCCCcC--CHHHHHHHHHHHHHHcCCc
Confidence            89999999999988754321  1222223444556666665

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.81  E-value=0.0029  Score=64.95  Aligned_cols=95  Identities=13%  Similarity=0.134  Sum_probs=67.0

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC---CCeEEEEccCCC-CCCCCCcccEEEeccccC-----------CCC-hHHHHHHHH
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD---PQIITQASSLSQ-LPVESFSIDTVLSISSSH-----------ELP-GDQLLEEIS   82 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~---~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~-----------~~~-~~~~L~ei~   82 (297)
                      |+..|+++.+++.|+++++...   .++.++++|+.. ++....+||+|++.....           ... ...++.++.
T Consensus       565 V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~  644 (703)
T 3v97_A          565 TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLK  644 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHH
Confidence            5567889999999998875432   479999999875 455568999999865321           111 256788999


Q ss_pred             hcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        83 RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ++|+|||.|++......-.  ..      ...+...||.
T Consensus       645 ~~LkpgG~L~~s~~~~~~~--~~------~~~l~~~g~~  675 (703)
T 3v97_A          645 RLLRAGGTIMFSNNKRGFR--MD------LDGLAKLGLK  675 (703)
T ss_dssp             HHEEEEEEEEEEECCTTCC--CC------HHHHHHTTEE
T ss_pred             HhcCCCcEEEEEECCcccc--cC------HHHHHHcCCc
Confidence            9999999999877542211  11      2345667887

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=95.80  E-value=0.0058  Score=56.76  Aligned_cols=75  Identities=12%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .|+..|+++.+++.|+++++..  ..++.++.+|+..+.   .+||+|++.....   ...++.++.++|+|||.+++..
T Consensus       218 ~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~~---~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          218 KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPKF---AHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTTT---GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcHh---HHHHHHHHHHHcCCCCEEEEEE
Confidence            3556788889999998876544  247999999998775   7899999864322   2468899999999999999887


Q ss_pred             cCC
Q 022411           96 KLT   98 (297)
Q Consensus        96 ~~~   98 (297)
                      ...
T Consensus       292 ~~~  294 (336)
T 2yx1_A          292 IGK  294 (336)
T ss_dssp             EES
T ss_pred             eec
Confidence            654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.70  E-value=0.0093  Score=56.96  Aligned_cols=92  Identities=12%  Similarity=-0.076  Sum_probs=61.9

Q ss_pred             cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC-CCCCCcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~   72 (297)
                      .|.+||-+..++            .|+..|+++.|++.|+++++.......+.++|+..+ +...+.||+|++.......
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            366777665443            355668889999999988765443345668887653 2213349999987543111


Q ss_pred             ---------C-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 ---------P-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ---------~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                               . ...++.++.++|||||.|++....
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence                     1 147888899999999999877654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.63  E-value=0.011  Score=50.39  Aligned_cols=58  Identities=17%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             CCeEEEEccCCCCCCCC-----------CcccEEEeccccCCC-----C-------hHHHHHHHHhcccCCcEEEEEecC
Q 022411           41 PQIITQASSLSQLPVES-----------FSIDTVLSISSSHEL-----P-------GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~d-----------~sfD~Vls~~~~~~~-----~-------~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      .++.++++|+...+...           ++||+|++.......     .       ...++.++.++|||||.|++..+.
T Consensus        62 ~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~  141 (191)
T 3dou_A           62 AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ  141 (191)
T ss_dssp             TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence            47899999998765211           489999997532211     0       146788899999999999988765


Q ss_pred             C
Q 022411           98 T   98 (297)
Q Consensus        98 ~   98 (297)
                      .
T Consensus       142 ~  142 (191)
T 3dou_A          142 G  142 (191)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.58  E-value=0.0097  Score=53.72  Aligned_cols=77  Identities=9%  Similarity=0.011  Sum_probs=62.0

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ..+..-|+...|++.+++.+.....+..+.++|...-|++. +||+|+++-++|++.   ....+ .++..|+++|.++-
T Consensus       127 ~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          127 ASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             SEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEE
Confidence            34446688999999999887666788899999998887665 899999998888875   23444 89999999988876


Q ss_pred             Ee
Q 022411           94 YK   95 (297)
Q Consensus        94 ~~   95 (297)
                      ..
T Consensus       205 fP  206 (253)
T 3frh_A          205 FP  206 (253)
T ss_dssp             EE
T ss_pred             cC
Confidence            65

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=95.57  E-value=0.022  Score=51.98  Aligned_cols=113  Identities=9%  Similarity=0.005  Sum_probs=74.0

Q ss_pred             cccCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|.+||-+..|+.             |...|+.+...+.++++++..  ..++.+..+|+..++ ....||.|+.+..
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC
Confidence            456777777655433             233466677788888776543  456999999998875 4578999998753


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ..   ...++....++|||||.++++....... ......+.+.+.+...||.
T Consensus       202 ~~---~~~~l~~a~~~lk~gG~ih~~~~~~e~~-~~~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          202 VR---THEFIPKALSIAKDGAIIHYHNTVPEKL-MPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGG-TTTTTHHHHHHHHHHTTCE
T ss_pred             Cc---HHHHHHHHHHHcCCCCEEEEEeeecccc-cchhHHHHHHHHHHHcCCc
Confidence            22   3467888899999999998876543210 0011123455667778875

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.40  E-value=0.024  Score=50.22  Aligned_cols=113  Identities=12%  Similarity=0.008  Sum_probs=76.5

Q ss_pred             ccccCceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCC-CCCCCCCcccEEEe
Q 022411            3 TGKMQSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLS-QLPVESFSIDTVLS   65 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~-~Lp~~d~sfD~Vls   65 (297)
                      .++.|.+||-+-.|+.              |..-|+.+.+++.|+++++..  ..++.++.+|+. .++.. ..||+|+.
T Consensus        12 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~Ivi   90 (225)
T 3kr9_A           12 FVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITI   90 (225)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEE
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEE
Confidence            3455666776644332              234588889999999887654  336999999984 55422 26998886


Q ss_pred             ccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      .-.-.. ....++.+..+.|+|+|+|++.-...         ...+++.|..+||..++..
T Consensus        91 aG~Gg~-~i~~Il~~~~~~L~~~~~lVlq~~~~---------~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           91 AGMGGR-LIARILEEGLGKLANVERLILQPNNR---------EDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             EEECHH-HHHHHHHHTGGGCTTCCEEEEEESSC---------HHHHHHHHHHTTEEEEEEE
T ss_pred             cCCChH-HHHHHHHHHHHHhCCCCEEEEECCCC---------HHHHHHHHHHCCCEEEEEE
Confidence            432111 03568888999999999998865421         1267788999999977654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.33  E-value=0.042  Score=52.77  Aligned_cols=107  Identities=17%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC----CCCCCCcccEEEecccc
Q 022411            7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ----LPVESFSIDTVLSISSS   69 (297)
Q Consensus         7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~----Lp~~d~sfD~Vls~~~~   69 (297)
                      +.+||-|--|+.            |+..|+++.|++.|+++++.. ..++.++.+|+..    +|+.+++||+|++....
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr  366 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR  366 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred             CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCC
Confidence            456666654433            335578889999999887544 3489999999976    45677899999997644


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ...  ..++..+. .++|++.+++...       +.. +..-...|...||.-..
T Consensus       367 ~g~--~~~~~~l~-~~~p~~ivyvsc~-------p~t-lard~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          367 AGA--AGVMQQII-KLEPIRIVYVSCN-------PAT-LARDSEALLKAGYTIAR  410 (433)
T ss_dssp             TCC--HHHHHHHH-HHCCSEEEEEESC-------HHH-HHHHHHHHHHTTCEEEE
T ss_pred             ccH--HHHHHHHH-hcCCCeEEEEECC-------hHH-HHhhHHHHHHCCcEEEE
Confidence            332  24555554 4899999887642       221 21223456668987544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.29  E-value=0.0089  Score=53.85  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=49.8

Q ss_pred             CCeEEEEccCCC-CCCCCC----cccEEEec-cccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHH
Q 022411           41 PQIITQASSLSQ-LPVESF----SIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISAL  111 (297)
Q Consensus        41 ~~v~~~~~d~~~-Lp~~d~----sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l  111 (297)
                      .++.++.+|+.. +|.-+.    .||+|+.- ++....|   ...++.+++|.|+|||+|+.+...           ..+
T Consensus       150 ~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa-----------~~v  218 (257)
T 2qy6_A          150 VTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA-----------GFV  218 (257)
T ss_dssp             EEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB-----------HHH
T ss_pred             eEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC-----------HHH
Confidence            457788999865 453222    79999984 3221111   367999999999999999853321           156


Q ss_pred             HHHHHHCCcccc
Q 022411          112 EGKLLLAGFLDA  123 (297)
Q Consensus       112 ~~~L~laGFv~v  123 (297)
                      ++.|..+||...
T Consensus       219 rr~L~~aGF~v~  230 (257)
T 2qy6_A          219 RRGLQEAGFTMQ  230 (257)
T ss_dssp             HHHHHHHTEEEE
T ss_pred             HHHHHHCCCEEE
Confidence            788999999854

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.84  E-value=0.033  Score=53.54  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHhhhcCC---CeEEEEccCCCCCCCCCcccEEEeccccCCCC---h---------------HHHHH
Q 022411           21 VSAVLNAIRDLGDEAVEQCDP---QIITQASSLSQLPVESFSIDTVLSISSSHELP---G---------------DQLLE   79 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~~~---~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~---------------~~~L~   79 (297)
                      ..|+.+.+.++|+.+......   ++.+.++|....+.. ..||+|+++..++...   .               ..+++
T Consensus       213 G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~  291 (445)
T 2okc_A          213 GVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQ  291 (445)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHH
Confidence            445556778888766543222   677888888776644 3899999986554321   1               37899


Q ss_pred             HHHhcccCCcEEEEEecC
Q 022411           80 EISRVLKPGGTILIYKKL   97 (297)
Q Consensus        80 ei~RvLKPGG~l~i~~~~   97 (297)
                      ++++.|||||++.+..+.
T Consensus       292 ~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          292 HMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHhccCCEEEEEECC
Confidence            999999999999887753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=94.83  E-value=0.041  Score=52.97  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .|+..|+++.|++.|++++......+.++.+|+..+.. . +||+|++........ ..++..+ +.|+|+|.+++..
T Consensus       314 ~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~g~~-~~~~~~l-~~l~p~givyvsc  387 (425)
T 2jjq_A          314 NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRAGLH-PRLVKRL-NREKPGVIVYVSC  387 (425)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTTCSC-HHHHHHH-HHHCCSEEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCccchH-HHHHHHH-HhcCCCcEEEEEC
Confidence            34455788899999988775433239999999988752 2 899999976433222 3456555 4599999999864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=94.64  E-value=0.064  Score=50.97  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC-CC----hHHHHHHHHhcccC--C
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP----GDQLLEEISRVLKP--G   88 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-~~----~~~~L~ei~RvLKP--G   88 (297)
                      .+...|+.+.|++.|+++++..  ...+.+.++|+..++.+. +||+|+++..+.. +.    ...++.++.+.||+  |
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g  336 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT  336 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence            3556788899999999887654  346999999999988664 8999999976542 21    35677778888887  9


Q ss_pred             cEEEEEecC
Q 022411           89 GTILIYKKL   97 (297)
Q Consensus        89 G~l~i~~~~   97 (297)
                      |++++....
T Consensus       337 ~~~~iit~~  345 (384)
T 3ldg_A          337 WSQFILTND  345 (384)
T ss_dssp             SEEEEEESC
T ss_pred             cEEEEEECC
Confidence            999988764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=94.46  E-value=0.052  Score=51.67  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC-CC----hHHHHHHHHhcccC--C
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP----GDQLLEEISRVLKP--G   88 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-~~----~~~~L~ei~RvLKP--G   88 (297)
                      .+...|+.+.|++.|++++...  ..++.+.++|+..++.+ .+||+|+++..+.. +.    ...++.++.++||+  |
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence            4567788899999999887654  34699999999998865 48999999965532 11    24567777777776  9


Q ss_pred             cEEEEEecC
Q 022411           89 GTILIYKKL   97 (297)
Q Consensus        89 G~l~i~~~~   97 (297)
                      |.+++....
T Consensus       344 ~~~~iit~~  352 (393)
T 3k0b_A          344 WSVYVLTSY  352 (393)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEEEECC
Confidence            999988764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=94.35  E-value=0.075  Score=48.54  Aligned_cols=101  Identities=12%  Similarity=0.090  Sum_probs=71.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~   94 (297)
                      .+..-|+.+.|++.+++++........+.+.|...-+ +...||+|+++-++|++..   ...+ +++..|+|+|.++-.
T Consensus       158 ~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          158 VYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence            4446689999999999988776777888888887554 4678999999999888862   3566 999999999999876


Q ss_pred             ec--CCCCccchHHHH-HHHHHHHHHCCc
Q 022411           95 KK--LTSDKGDVDKAI-SALEGKLLLAGF  120 (297)
Q Consensus        95 ~~--~~~~~g~~~~~~-~~l~~~L~laGF  120 (297)
                      +.  ..+....+.... ..++..+...|.
T Consensus       236 p~ksl~Grs~gm~~~Y~~~~e~~~~~~g~  264 (281)
T 3lcv_B          236 PTKSLGQRSKGMFQNYSQSFESQARERSC  264 (281)
T ss_dssp             ECC-------CHHHHHHHHHHHHHHHHTC
T ss_pred             cchhhcCCCcchhhHHHHHHHHHHHhcCC
Confidence            65  222111223222 345555666776

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=94.01  E-value=0.068  Score=50.69  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCC-----hHHHHHHHHhcccC--
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKP--   87 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKP--   87 (297)
                      ..+...|+.+.|++.|++++....  .++.+.++|+..++.+ .+||+|+++-.+..-.     ...+++++.++||+  
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            345677888999999998876543  3699999999988765 5899999987654321     25677778888887  


Q ss_pred             CcEEEEEecC
Q 022411           88 GGTILIYKKL   97 (297)
Q Consensus        88 GG~l~i~~~~   97 (297)
                      ||.+++....
T Consensus       337 g~~~~iit~~  346 (385)
T 3ldu_A          337 NWSYYLITSY  346 (385)
T ss_dssp             SCEEEEEESC
T ss_pred             CCEEEEEECC
Confidence            9999888764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=93.12  E-value=0.16  Score=46.71  Aligned_cols=89  Identities=16%  Similarity=0.184  Sum_probs=60.0

Q ss_pred             ceEEEeecCCccC--------------hHHHHHHHHHHHHHHh------hhcCCCeEEEEccCCC-CCCCCCcccEEEec
Q 022411            8 SAVLALSEDKILP--------------VSAVLNAIRDLGDEAV------EQCDPQIITQASSLSQ-LPVESFSIDTVLSI   66 (297)
Q Consensus         8 ~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~------~~~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~   66 (297)
                      .+||++--|...+              +-++-+++++.+++-.      ...++++..+.+|+.. +.-..++||+|+.-
T Consensus        85 k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D  164 (294)
T 3o4f_A           85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISD  164 (294)
T ss_dssp             CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEES
T ss_pred             CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEe
Confidence            4677775544433              3344456777776532      1236899999998864 34456789999976


Q ss_pred             cccC-----CCChHHHHHHHHhcccCCcEEEEEec
Q 022411           67 SSSH-----ELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        67 ~~~~-----~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ..-.     .+-...+++.+.|+|+|||.++.+..
T Consensus       165 ~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          165 CTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             CCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            5311     12246899999999999999998753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=92.79  E-value=0.057  Score=49.19  Aligned_cols=53  Identities=2%  Similarity=-0.191  Sum_probs=36.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHEL   72 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~   72 (297)
                      .++..|+.+.|++.++++.... ..++.++.+|+..++++  +||+|+++..+++.
T Consensus        66 ~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           66 KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIPYKIS  119 (299)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECCGGGH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCCcccc
Confidence            3445577889999998876433 36899999999988764  89999998766653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.72  E-value=0.047  Score=49.59  Aligned_cols=85  Identities=19%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CCCeEEEEccCCC-CC-CCCCcccEEEeccccCCC--------------------C-hHHHHHHHHhcccCCcEEEEEec
Q 022411           40 DPQIITQASSLSQ-LP-VESFSIDTVLSISSSHEL--------------------P-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        40 ~~~v~~~~~d~~~-Lp-~~d~sfD~Vls~~~~~~~--------------------~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      ...+.++++|... ++ +++++||+|++.-.+...                    . ...++.++.|+|||||.+++...
T Consensus        19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            3467888998765 32 568899999998654311                    0 13567899999999999987754


Q ss_pred             CCC----Cccc--hHHHHHHHHHHHHHCCccccc
Q 022411           97 LTS----DKGD--VDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        97 ~~~----~~g~--~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ...    ..+.  .-.....+...+..+||....
T Consensus        99 d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A           99 DVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             CEEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred             CCccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence            210    0010  000112455667789997544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=91.97  E-value=0.39  Score=44.83  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             CCeEEEEccCCCCCCCCCcccEEEeccccCC----------CCh--------------------HHHHHHHHhcccCCcE
Q 022411           41 PQIITQASSLSQLPVESFSIDTVLSISSSHE----------LPG--------------------DQLLEEISRVLKPGGT   90 (297)
Q Consensus        41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~----------~~~--------------------~~~L~ei~RvLKPGG~   90 (297)
                      .++.++++|+...+ +...||+|+++-.+..          +..                    ..++.++.++|+|||+
T Consensus        81 ~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~  159 (421)
T 2ih2_A           81 PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV  159 (421)
T ss_dssp             TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred             CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCE
Confidence            36888899988765 3468999999743221          211                    1568899999999999


Q ss_pred             EEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411           91 ILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus        91 l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v  123 (297)
                      +.+..+...-...   ....+++.+...|+..+
T Consensus       160 ~~~i~p~~~l~~~---~~~~lr~~l~~~~~~~i  189 (421)
T 2ih2_A          160 LVFVVPATWLVLE---DFALLREFLAREGKTSV  189 (421)
T ss_dssp             EEEEEEGGGGTCG---GGHHHHHHHHHHSEEEE
T ss_pred             EEEEEChHHhcCc---cHHHHHHHHHhcCCeEE
Confidence            9888764211011   12256666777777433

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=91.72  E-value=0.4  Score=43.69  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=41.9

Q ss_pred             CeEEEEccCCCCCCCCCcccEEEeccccC----CCC-h--HHHHHHHHhcccCC-cEEEEEecC
Q 022411           42 QIITQASSLSQLPVESFSIDTVLSISSSH----ELP-G--DQLLEEISRVLKPG-GTILIYKKL   97 (297)
Q Consensus        42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~----~~~-~--~~~L~ei~RvLKPG-G~l~i~~~~   97 (297)
                      ++.+...+++...++...||+|++..+.+    +.. .  -.+|..+.++|||| |.|++..+.
T Consensus       123 ~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          123 NIITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             GGEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CeEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            55666676666678889999999987555    332 1  23568889999999 999997765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=90.71  E-value=0.0036  Score=55.20  Aligned_cols=88  Identities=14%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             ccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCC-CcccEEEeccccCC
Q 022411            5 KMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSHE   71 (297)
Q Consensus         5 ~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~   71 (297)
                      +.+.+||-+--|+..-            ..|+++.|++.++++.. ...++.++.+|+..+++++ ++| .|+++..++.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~  105 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHL  105 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSS
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCcccCCCc-EEEEeCCccc
Confidence            3456777776554433            22334445444443322 2357899999999998874 689 6777654332


Q ss_pred             CC------------hHHHH----HHHHhcccCCcEEEEE
Q 022411           72 LP------------GDQLL----EEISRVLKPGGTILIY   94 (297)
Q Consensus        72 ~~------------~~~~L----~ei~RvLKPGG~l~i~   94 (297)
                      ..            ....+    ..+.|+|+|||+|++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A          106 STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            11            12223    5577888888776543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=90.63  E-value=0.32  Score=49.72  Aligned_cols=79  Identities=19%  Similarity=0.102  Sum_probs=54.7

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCC--CCCCCcccEEEeccccCC-CC----hHHH---HHHHHhcc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQL--PVESFSIDTVLSISSSHE-LP----GDQL---LEEISRVL   85 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~-~~----~~~~---L~ei~RvL   85 (297)
                      .+...|+.+.|++.|+.++....  ..+.+.++|+..+  |...+.||+|+++-.+.. +.    ...+   +.++++.+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~  337 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ  337 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence            34466788899999998876543  3489999999887  444458999999965432 11    2333   44455556


Q ss_pred             cCCcEEEEEec
Q 022411           86 KPGGTILIYKK   96 (297)
Q Consensus        86 KPGG~l~i~~~   96 (297)
                      .|||++++...
T Consensus       338 ~~g~~~~ilt~  348 (703)
T 3v97_A          338 FGGWNLSLFSA  348 (703)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCeEEEEeC
Confidence            68999998755

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=90.29  E-value=0.2  Score=49.65  Aligned_cols=100  Identities=11%  Similarity=-0.041  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHHHhhhcC-CC-----eEEEEccCCCCC-CCCCcccEEEeccccCCCC---------------hHHH
Q 022411           20 PVSAVLNAIRDLGDEAVEQCD-PQ-----IITQASSLSQLP-VESFSIDTVLSISSSHELP---------------GDQL   77 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~~-~~-----v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~---------------~~~~   77 (297)
                      ...++.+.+.++|+.++.... ..     +.+..+|....+ .....||+|+++..+....               ...+
T Consensus       215 ~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~F  294 (541)
T 2ar0_A          215 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCF  294 (541)
T ss_dssp             EEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHH
Confidence            344566777788876543222 22     667788776543 4467899999986543211               1368


Q ss_pred             HHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           78 LEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      +.++.+.|||||++.+..+...-...  .....+++.|...+.+
T Consensus       295 l~~~l~~Lk~gGr~a~V~p~~~L~~~--~~~~~iR~~L~~~~~l  336 (541)
T 2ar0_A          295 MQHIIETLHPGGRAAVVVPDNVLFEG--GKGTDIRRDLMDKCHL  336 (541)
T ss_dssp             HHHHHHHEEEEEEEEEEEEHHHHHCC--THHHHHHHHHHHHEEE
T ss_pred             HHHHHHHhCCCCEEEEEecCcceecC--cHHHHHHHHHhhcCCE
Confidence            99999999999999887653200000  0123566666655543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=90.14  E-value=0.42  Score=41.43  Aligned_cols=74  Identities=9%  Similarity=-0.063  Sum_probs=47.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc----CCCeEEEEccCCC---------------CC--------C-CCCcccEEEecccc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQ---------------LP--------V-ESFSIDTVLSISSS   69 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~---------------Lp--------~-~d~sfD~Vls~~~~   69 (297)
                      .++..+.-+++.+.|+++.++.    ..+|.++.+++..               ++        + ..++||+|+.-...
T Consensus        53 ~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k  132 (202)
T 3cvo_A           53 HVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF  132 (202)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC
Confidence            3333344456677777665543    3478899998643               22        2 23689999987632


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .    ...+..+.+.|+|||++++-+
T Consensus       133 ~----~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          133 R----VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             H----HHHHHHHHHHCSSCEEEEETT
T ss_pred             c----hhHHHHHHHhcCCCeEEEEeC
Confidence            2    355666789999999997544

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=89.53  E-value=0.25  Score=45.41  Aligned_cols=83  Identities=17%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             CCeEEEEccCCC-CC-CCCCcccEEEeccccCCC--------------C-hHHHHHHHHhcccCCcEEEEEecCCCCccc
Q 022411           41 PQIITQASSLSQ-LP-VESFSIDTVLSISSSHEL--------------P-GDQLLEEISRVLKPGGTILIYKKLTSDKGD  103 (297)
Q Consensus        41 ~~v~~~~~d~~~-Lp-~~d~sfD~Vls~~~~~~~--------------~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~  103 (297)
                      ....++.+|... |. +++++||+|++.-.+...              . ....+.++.|+|||||.+++........+.
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~   92 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   92 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence            456777887643 43 568899999987543211              1 367889999999999999887543200010


Q ss_pred             ---hHHHHHHHHHHHHHCCcccc
Q 022411          104 ---VDKAISALEGKLLLAGFLDA  123 (297)
Q Consensus       104 ---~~~~~~~l~~~L~laGFv~v  123 (297)
                         ....+..+...+...||.-.
T Consensus        93 ~~~~~~~~~~i~~~~~~~Gf~~~  115 (323)
T 1boo_A           93 PARSIYNFRVLIRMIDEVGFFLA  115 (323)
T ss_dssp             EEECCHHHHHHHHHHHTTCCEEE
T ss_pred             cccccchHHHHHHHHHhCCCEEE
Confidence               00112233345677898654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=89.11  E-value=0.14  Score=48.47  Aligned_cols=74  Identities=11%  Similarity=0.015  Sum_probs=52.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhc---------------C-CCeEEEEccCCCCCC-CCCcccEEEeccccCCCChHHHHHHH
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC---------------D-PQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEI   81 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~---------------~-~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~~~~~~~L~ei   81 (297)
                      |+.-|+.+.+++.++++++..               . .++.+..+|+..+.. ....||+|+..- .  .....++..+
T Consensus        74 V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lDP-~--~~~~~~l~~a  150 (378)
T 2dul_A           74 VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP-F--GSPMEFLDTA  150 (378)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC-S--SCCHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhccCCCCEEEeCC-C--CCHHHHHHHH
Confidence            445567778888888876543               2 238889999865531 135799999643 1  1236789999


Q ss_pred             HhcccCCcEEEEEe
Q 022411           82 SRVLKPGGTILIYK   95 (297)
Q Consensus        82 ~RvLKPGG~l~i~~   95 (297)
                      .+.|||||.+++.-
T Consensus       151 ~~~lk~gG~l~vt~  164 (378)
T 2dul_A          151 LRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHhcCCCCEEEEEe
Confidence            99999999888764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=88.20  E-value=0.69  Score=42.39  Aligned_cols=78  Identities=5%  Similarity=-0.121  Sum_probs=51.5

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCC---CcccEEEeccc------cC------C----CC--h-
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVES---FSIDTVLSISS------SH------E----LP--G-   74 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d---~sfD~Vls~~~------~~------~----~~--~-   74 (297)
                      .|...|+.+.+++.++++++.. ..++.++.+|+..++...   .+||.|++...      +.      |    -+  . 
T Consensus       129 ~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~  208 (309)
T 2b9e_A          129 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLH  208 (309)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHH
Confidence            3445577788889888887654 357999999998775432   57999997321      10      1    00  0 


Q ss_pred             ------HHHHHHHHhcccCCcEEEEEec
Q 022411           75 ------DQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        75 ------~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                            ..+|...++.|+ ||+|++..-
T Consensus       209 ~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          209 ALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             HHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence                  245777777787 998887653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=87.99  E-value=0.39  Score=43.92  Aligned_cols=65  Identities=11%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             cCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+++||-+-.|+.            |+..|+.+.|++.++++.. ...++.++.+|+..+++++.+||+|+++..+++
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQI  126 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSCGGGSCCSEEEEECCGGG
T ss_pred             CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCCcccCCccEEEEeCcccc
Confidence            4566776655433            3344666788888877654 456899999999999999989999999876654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=86.95  E-value=0.51  Score=43.64  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             CeEEEEccCC-CCC-CCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHH
Q 022411           42 QIITQASSLS-QLP-VESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL  115 (297)
Q Consensus        42 ~v~~~~~d~~-~Lp-~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L  115 (297)
                      .+.+..+|+. .++ +++..||+|+.- ++...-|   ...++++|+|.++|||+|.-+...           ..+++.|
T Consensus       167 ~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa-----------g~VRR~L  235 (308)
T 3vyw_A          167 SLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS-----------LSVRKSL  235 (308)
T ss_dssp             EEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC-----------HHHHHHH
T ss_pred             EEEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc-----------HHHHHHH
Confidence            3556678874 344 345689999974 3222222   378999999999999999733221           1678899


Q ss_pred             HHCCccccc
Q 022411          116 LLAGFLDAQ  124 (297)
Q Consensus       116 ~laGFv~v~  124 (297)
                      ..+||....
T Consensus       236 ~~aGF~V~k  244 (308)
T 3vyw_A          236 LTLGFKVGS  244 (308)
T ss_dssp             HHTTCEEEE
T ss_pred             HHCCCEEEe
Confidence            999998543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=86.65  E-value=0.64  Score=46.09  Aligned_cols=100  Identities=10%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC-CCCCcccEEEeccccCC-------------------------CC
Q 022411           22 SAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSISSSHE-------------------------LP   73 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~-------------------------~~   73 (297)
                      .++...+..+|+.++...  ..++.+..+|....+ +....||+|+++-.+..                         ++
T Consensus       289 ~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~  368 (544)
T 3khk_A          289 QESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTP  368 (544)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCC
T ss_pred             EeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccC
Confidence            344556666666554322  223333666654433 55679999999864431                         22


Q ss_pred             h-----HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           74 G-----DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        74 ~-----~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      +     -.++.++.+.|||||++.+..+...-... ......+++.|...+.+.
T Consensus       369 ~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~-~~~~~~iRk~Lle~~~l~  421 (544)
T 3khk_A          369 PTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN-TNNEGEIRKTLVEQDLVE  421 (544)
T ss_dssp             CTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC-GGGHHHHHHHHHHTTCEE
T ss_pred             CCcchhHHHHHHHHHHhccCceEEEEecchhhhcC-cchHHHHHHHHHhCCcHh
Confidence            1     25899999999999999887654210000 012236777888888764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=86.30  E-value=0.28  Score=43.11  Aligned_cols=82  Identities=5%  Similarity=0.037  Sum_probs=51.3

Q ss_pred             cCceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCC-CcccEEEeccccCCC
Q 022411            6 MQSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVES-FSIDTVLSISSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~   72 (297)
                      .+.+||-+--|+.            ++..|+.+.|++.++++... ..++.++.+|+..+++++ ..| .|+++..+++ 
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~~~~~~~~-~vv~nlPy~~-  106 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQFKFPKNQSY-KIFGNIPYNI-  106 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGCCCCSSCCC-EEEEECCGGG-
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHhCCcccCCCe-EEEEeCCccc-
Confidence            4566777755543            33457778899988876543 468999999999998875 456 5666665543 


Q ss_pred             ChHHHHHHHHhcccCCcEE
Q 022411           73 PGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        73 ~~~~~L~ei~RvLKPGG~l   91 (297)
                       ....+..+.+....++.+
T Consensus       107 -~~~~l~~~l~~~~~~~~~  124 (244)
T 1qam_A          107 -STDIIRKIVFDSIADEIY  124 (244)
T ss_dssp             -HHHHHHHHHHSCCCSEEE
T ss_pred             -CHHHHHHHHhcCCCCeEE
Confidence             223444444443333333

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=86.21  E-value=0.46  Score=44.31  Aligned_cols=74  Identities=7%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCC--------------CcccEEEeccccCCCChHHHHHH
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VES--------------FSIDTVLSISSSHELPGDQLLEE   80 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d--------------~sfD~Vls~~~~~~~~~~~~L~e   80 (297)
                      .|+..|+++.|++.|+++++.. ..++.++.+|+..+.  +..              .+||+|+......     .+..+
T Consensus       237 ~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-----g~~~~  311 (369)
T 3bt7_A          237 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-----GLDSE  311 (369)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-----CCCHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc-----ccHHH
Confidence            3456688899999999877543 358999999987542  222              3799999764322     13456


Q ss_pred             HHhcccCCcEEEEEec
Q 022411           81 ISRVLKPGGTILIYKK   96 (297)
Q Consensus        81 i~RvLKPGG~l~i~~~   96 (297)
                      +.+.|+|+|++++..-
T Consensus       312 ~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          312 TEKMVQAYPRILYISC  327 (369)
T ss_dssp             HHHHHTTSSEEEEEES
T ss_pred             HHHHHhCCCEEEEEEC
Confidence            7788889999987654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=85.82  E-value=0.37  Score=45.95  Aligned_cols=73  Identities=12%  Similarity=0.092  Sum_probs=50.9

Q ss_pred             ChHHHHHHHHHHHHHHhhhcC-C-C-eEEEEccCCCCC--CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQCD-P-Q-IITQASSLSQLP--VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~~-~-~-v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +..|+.+...+.++++++... . + +.++.+|+..+-  .-...||+|+... +  -....++..+.+.|+|||.|++.
T Consensus        81 ~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP-~--g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A           81 YANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP-F--GTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC-S--SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC-C--cCHHHHHHHHHHHhCCCCEEEEE
Confidence            344556777888888765432 2 3 899999885431  1145799999875 1  11356899999999999988876


Q ss_pred             e
Q 022411           95 K   95 (297)
Q Consensus        95 ~   95 (297)
                      -
T Consensus       158 ~  158 (392)
T 3axs_A          158 A  158 (392)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=84.70  E-value=1.7  Score=38.29  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             CCCcccEEEeccccCCC--------------C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022411           56 ESFSIDTVLSISSSHEL--------------P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF  120 (297)
Q Consensus        56 ~d~sfD~Vls~~~~~~~--------------~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF  120 (297)
                      ++++||+|+.--.+..-              . ....+.++.|+|+|+|.+++...      ..  ....+...+...||
T Consensus        20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~------d~--~~~~~~~~~~~~gf   91 (260)
T 1g60_A           20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT------PF--NCAFICQYLVSKGM   91 (260)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC------HH--HHHHHHHHHHHTTC
T ss_pred             cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC------cH--HHHHHHHHHHhhcc
Confidence            46678888876433211              1 35678899999999999988641      11  11234445667888


Q ss_pred             ccc
Q 022411          121 LDA  123 (297)
Q Consensus       121 v~v  123 (297)
                      .-.
T Consensus        92 ~~~   94 (260)
T 1g60_A           92 IFQ   94 (260)
T ss_dssp             EEE
T ss_pred             cee
Confidence            643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	0.001
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.004

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 8   SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS 67
           S    L E K          +R    + V   D   + Q   L          D ++S  
Sbjct: 110 SQHACLIEGKGECWQDKERQLRARV-KRVLPID---VHQPQPLGAGSPAPLPADALVSAF 165

Query: 68  SSHELPGD-----QLLEEISRVLKPGGTILIYKKLTSDKGDVD 105
               +  D     + L+ I+ +L+PGG +L+   L        
Sbjct: 166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG 208

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 3/105 (2%)

Query: 58  FSIDTVLSISSSHELPGDQL---LEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGK 114
              D +LS      L    +   +  + R  KPGG  LI   + +              +
Sbjct: 94  GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKE 153

Query: 115 LLLAGFLDAQRIQLKSVVPAEVVSFGVKGKKPTWKIGSSFAIKKA 159
             L  + +   +   +    E+      G +   +  +  A K A
Sbjct: 154 GELRRYYEGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA 198

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 52  QLPVESFSIDTVLSISSSHELPGD---QLLEEISRVLKPGGTILIY 94
           +L  E  + D V+ I S          Q+ +E+ RVLKP G  ++Y
Sbjct: 95  KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.3
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.21
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.08
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.0
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.99
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.95
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.94
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.86
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.75
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.74
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.66
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.63
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.59
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.56
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.46
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.45
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.44
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.41
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.38
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.26
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.26
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.2
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.16
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.13
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.11
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.09
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.08
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.07
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.04
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.0
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.0
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.98
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.97
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.88
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.82
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.8
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.76
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.68
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.52
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.43
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.4
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.34
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.13
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.04
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.98
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.91
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.74
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	96.64
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.6
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	95.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.73
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.22
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.04
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.79
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.12
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	93.71
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.49
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	93.17
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	90.94
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.91
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	90.46
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.05
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	89.4
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	89.2
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	89.15
d2h00a1	250	Methyltransferase 10 domain containing protein MET	88.91
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.59
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.67
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	87.27
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	85.83
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	85.08
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	84.86
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.24
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	83.92
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	83.91
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	83.57
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	80.41

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.30  E-value=1.4e-12  Score=112.15  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=90.8

Q ss_pred             cccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            4 GKMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         4 ~~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      ++.|.+||-|--|+            .++..|+++.|++.|++++... .+++.+++++++.+||++++||+|++..++|
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~   92 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH   92 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence            34556666664433            3445688999999998876543 6789999999999999999999999999999


Q ss_pred             CCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHH-----------------HHHHHHHHHHHCCccccc
Q 022411           71 ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK-----------------AISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~-----------------~~~~l~~~L~laGFv~v~  124 (297)
                      |++ +..++++++|+|||||+|++.++.......+..                 ..+++.+.|..+||..++
T Consensus        93 ~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  164 (231)
T d1vl5a_          93 HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE  164 (231)
T ss_dssp             GCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred             ccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEE
Confidence            997 889999999999999999998764322111111                 014566778888997654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.21  E-value=3.9e-11  Score=103.93  Aligned_cols=95  Identities=16%  Similarity=0.215  Sum_probs=80.4

Q ss_pred             cccCceEEEeecCCcc------------ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            4 GKMQSAVLALSEDKIL------------PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         4 ~~~~~~VLll~~~~~v------------t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      +|-|++||-|--|+..            +..|+++.|++.|++++... ..++.+++++++++||++++||+|++..++|
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~   93 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH   93 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceee
Confidence            4567788887665543            34477999999999876544 5689999999999999999999999999999


Q ss_pred             CCC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           71 ELP-GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      |++ +..++++++|+|||||++++.++..
T Consensus        94 ~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          94 HFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             GCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             cccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            998 8999999999999999999987653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.08  E-value=4.9e-11  Score=106.40  Aligned_cols=110  Identities=19%  Similarity=0.269  Sum_probs=85.1

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ..|+..|+++.|++.|+++....  ..++.++.+++.++|+++++||+|++..+++|++ +..++++++|+|||||+|++
T Consensus        91 ~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~  170 (282)
T d2o57a1          91 VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI  170 (282)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEE
Confidence            34455688889999998876543  4689999999999999999999999999999988 88999999999999999999


Q ss_pred             EecCCCC---ccchHH-----------HHHHHHHHHHHCCcccccch
Q 022411           94 YKKLTSD---KGDVDK-----------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        94 ~~~~~~~---~g~~~~-----------~~~~l~~~L~laGFv~v~~~  126 (297)
                      .++....   ...+..           ..+.+...+..+||.++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         171 TDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             EEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             EEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            8764221   111111           12456677889999876543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=1.4e-10  Score=98.35  Aligned_cols=94  Identities=21%  Similarity=0.241  Sum_probs=77.8

Q ss_pred             cccCceEEEeecC------------CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            4 GKMQSAVLALSED------------KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         4 ~~~~~~VLll~~~------------~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      ++.+.+||-|--|            ..++..|+++.|++.|+++.......+.++.+++..+|+++++||+|++..+++|
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            3445567666443            3445678999999999988777677889999999999999999999999999999


Q ss_pred             CC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           72 LP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        72 ~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++   ...+|++++|+|||||+|+|..+.
T Consensus       115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         115 FEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            87   357899999999999999987653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=3.9e-10  Score=95.36  Aligned_cols=113  Identities=14%  Similarity=0.139  Sum_probs=87.0

Q ss_pred             CceEEEeecCCcc--------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHH
Q 022411            7 QSAVLALSEDKIL--------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQL   77 (297)
Q Consensus         7 ~~~VLll~~~~~v--------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~   77 (297)
                      +.+||-|--|+.-        +..|+++.|++.|+++      ++.+.+++++++|+++++||+|++..+++|++ +..+
T Consensus        37 ~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~  110 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERA  110 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred             CCeEEEECCCCcccccccceEEEEeCChhhccccccc------ccccccccccccccccccccccccccccccccccccc
Confidence            4467777554422        2447788999988763      58899999999999999999999999999998 8899


Q ss_pred             HHHHHhcccCCcEEEEEecCCCCccc------------hH----HHHHHHHHHHHHCCcccccc
Q 022411           78 LEEISRVLKPGGTILIYKKLTSDKGD------------VD----KAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~~~~~~g~------------~~----~~~~~l~~~L~laGFv~v~~  125 (297)
                      +++++|+|||||++++..+.......            ..    .+..++...|..+||.+++.
T Consensus       111 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_         111 LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             hhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            99999999999999999875432100            00    01346788899999987654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-10  Score=99.19  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=85.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i   93 (297)
                      .++..|+++.|++.|++++... ..++.+.+++++.+++++++||+|++..++||++ +  ..++++++|+|||||.+++
T Consensus        85 ~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i  164 (222)
T d2ex4a1          85 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI  164 (222)
T ss_dssp             EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEE
Confidence            3456689999999999876544 5678999999999999999999999999999998 3  4799999999999999999


Q ss_pred             EecCCCCccc-------hHHHHHHHHHHHHHCCcccccc
Q 022411           94 YKKLTSDKGD-------VDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        94 ~~~~~~~~g~-------~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      .++.......       .......+...+..+||..++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~  203 (222)
T d2ex4a1         165 KDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  203 (222)
T ss_dssp             EEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             EEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence            8765332110       1112457788899999987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=5.6e-10  Score=96.01  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=71.2

Q ss_pred             cccCceEEEeecCC----------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDK----------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~----------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls   65 (297)
                      .+.|.+||-|--|+                .++..|+++.|++.|+++++..  ..++.+..+++..+|  ...||+|++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEE
Confidence            34566777664433                3456799999999999887654  445666777776554  668999999


Q ss_pred             ccccCCCC---hHHHHHHHHhcccCCcEEEEEecCC
Q 022411           66 ISSSHELP---GDQLLEEISRVLKPGGTILIYKKLT   98 (297)
Q Consensus        66 ~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~   98 (297)
                      .+.+||++   ...+|++++|+|||||.|++.+...
T Consensus       115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             eeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            99999986   4689999999999999999987653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.4e-09  Score=94.72  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=81.9

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~   92 (297)
                      +..++..|+++.|+++|++++...  ..+++++.+|+.++ +++++||+|++..+++|++ ...++++++|+|||||+++
T Consensus        56 ~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~  134 (245)
T d1nkva_          56 GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML  134 (245)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred             CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence            344556689999999999876554  45699999999998 4789999999999999987 7899999999999999999


Q ss_pred             EEecCCCCccc---hH-----------HHHHHHHHHHHHCCccccc
Q 022411           93 IYKKLTSDKGD---VD-----------KAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        93 i~~~~~~~~g~---~~-----------~~~~~l~~~L~laGFv~v~  124 (297)
                      +.++.......   ..           .....+...+..+||..+.
T Consensus       135 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~  180 (245)
T d1nkva_         135 IGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE  180 (245)
T ss_dssp             EEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCE
T ss_pred             EEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEE
Confidence            98764221110   00           0123566778888886553

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.75  E-value=2.2e-09  Score=94.83  Aligned_cols=106  Identities=8%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      |+..|+++.|++.|+++... ..++.+.+++++.+++++++||+|++..++||++ .  ..+|++++++|||||+|+|.+
T Consensus       119 v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         119 TDLLEPVKHMLEEAKRELAG-MPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEESCHHHHHHHHHHTTT-SSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCHHHHHhhhccccc-cccceeEEccccccccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            44557889999999876533 4468899999999999999999999999999998 3  478999999999999999987


Q ss_pred             cCCCCccc--------hHHHHHHHHHHHHHCCcccccc
Q 022411           96 KLTSDKGD--------VDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        96 ~~~~~~g~--------~~~~~~~l~~~L~laGFv~v~~  125 (297)
                      ........        ...+.+.+...+..+||..++.
T Consensus       198 ~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~  235 (254)
T d1xtpa_         198 NCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             EBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             cCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence            65321111        1112346778899999987654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.74  E-value=3.1e-09  Score=94.92  Aligned_cols=79  Identities=9%  Similarity=0.102  Sum_probs=69.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .++..|+++.|++.|+++......++.++++|+..+|+++ +||+|++..++||++ +..++++++|+|||||.+++.++
T Consensus        54 ~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~-~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          54 KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSS-CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEEEecchhHhhhhhcccccccccccccccccccccccC-CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            3556789999999999887766668999999999999864 799999999999998 88999999999999999999885


Q ss_pred             C
Q 022411           97 L   97 (297)
Q Consensus        97 ~   97 (297)
                      .
T Consensus       133 ~  133 (281)
T d2gh1a1         133 H  133 (281)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=4.1e-09  Score=90.19  Aligned_cols=87  Identities=20%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             cCceEEEeecC------------CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEec-cccCCC
Q 022411            6 MQSAVLALSED------------KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHEL   72 (297)
Q Consensus         6 ~~~~VLll~~~------------~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~-~~~~~~   72 (297)
                      ++.+||-+--|            ..|+..|+++.|++.|+++..     ..++.++++.+|+++++||+|++. .++||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc-----cccccccccccccccccccceeeecchhhhh
Confidence            45567655443            344566888999999987531     125678999999999999999986 467888


Q ss_pred             C-hHHHHHHHHhcccCCcEEEEEecC
Q 022411           73 P-GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        73 ~-~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      + +..+|++++|+|||||.+++..+.
T Consensus       117 ~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         117 ENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             hhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            7 788999999999999999988753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=9.1e-09  Score=88.80  Aligned_cols=80  Identities=11%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCCC---hHHHHHHHHhcccCCcEE
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELP---GDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~~---~~~~L~ei~RvLKPGG~l   91 (297)
                      +..++..|+++.|++.|+++......++.+.++++++++++ +.||+|++.. +++|++   ...+|++++|+|||||+|
T Consensus        63 ~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~l  141 (251)
T d1wzna1          63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF  141 (251)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ceEEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEE
Confidence            34456668999999999998777777899999999999988 4899999874 556665   358999999999999999


Q ss_pred             EEEec
Q 022411           92 LIYKK   96 (297)
Q Consensus        92 ~i~~~   96 (297)
                      ++..+
T Consensus       142 ii~~~  146 (251)
T d1wzna1         142 ITDFP  146 (251)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            98654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.63  E-value=8.5e-08  Score=83.61  Aligned_cols=127  Identities=16%  Similarity=0.094  Sum_probs=93.8

Q ss_pred             cccCceEEEeecCCccC--------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC-CCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-PVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~   68 (297)
                      ++.|.+||.|--|+..+              ..|+++.|++.+++++.. ..++..+.++.... ++.+..||++++...
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-RENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-CTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-hcccceEEEeeccCcccccccceeEEeecc
Confidence            56788999986655543              337778999998886544 56777887777644 467788898888777


Q ss_pred             cCCCC-hHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           69 SHELP-GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        69 ~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      +++.. ...++.++.|.|||||++++......  ..+++....++....|..+||..++.....|.
T Consensus       151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py  216 (230)
T d1g8sa_         151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPF  216 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred             ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence            77777 78889999999999999988864422  22344555667788899999988776655554

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.5e-08  Score=89.86  Aligned_cols=70  Identities=24%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC
Q 022411           20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS   99 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~   99 (297)
                      ...|+++.|++.|+++    .+++.++++++.++|+++++||+|++.++.++      ++|++|+|||||+|++..+...
T Consensus       112 ~giD~s~~~~~~a~~~----~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         112 FGLDVSKVAIKAAAKR----YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EEEESCHHHHHHHHHH----CTTSEEEECCTTSCSBCTTCEEEEEEESCCCC------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEecchHhhhhhhhcc----cccccceeeehhhccCCCCCEEEEeecCCHHH------HHHHHHHhCCCcEEEEEeeCCc
Confidence            3458888999887654    46799999999999999999999999887665      6899999999999999998754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.56  E-value=4.9e-08  Score=83.75  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHH-hcccCCcEEEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEIS-RVLKPGGTILIY   94 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~-RvLKPGG~l~i~   94 (297)
                      ..|+..|++++|++.|+++.   ..++.++.++++.+++ +++||+|++..+++|++ +..++.++. |+|||||.+++.
T Consensus        43 ~~v~giD~s~~~i~~a~~~~---~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          43 NDITCVEASEEAISHAQGRL---KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             SCEEEEESCHHHHHHHHHHS---CSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CeEEEEeCcHHHhhhhhccc---cccccccccccccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            34556688899999998653   3479999999998876 57899999999999998 788999998 899999999998


Q ss_pred             ecC
Q 022411           95 KKL   97 (297)
Q Consensus        95 ~~~   97 (297)
                      .+.
T Consensus       119 ~pn  121 (225)
T d2p7ia1         119 CPN  121 (225)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.46  E-value=1.3e-07  Score=82.41  Aligned_cols=94  Identities=18%  Similarity=0.083  Sum_probs=73.7

Q ss_pred             cccCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCC-CCCcccEEEecc
Q 022411            4 GKMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPV-ESFSIDTVLSIS   67 (297)
Q Consensus         4 ~~~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~   67 (297)
                      .+.|.+||-|--|+.             ++..|+++.|++.|+++....  ..++.+.++|+...++ ...+||+|++.+
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            356778888755543             335589999999999876543  4579999999987776 467899999999


Q ss_pred             ccCCCC-h----HHHHHHHHhcccCCcEEEEEecC
Q 022411           68 SSHELP-G----DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        68 ~~~~~~-~----~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++||+. +    ..+++++.|+|||||+|++..+.
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            999863 2    47899999999999999987653

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.45  E-value=9.5e-08  Score=80.17  Aligned_cols=80  Identities=20%  Similarity=0.100  Sum_probs=66.8

Q ss_pred             CccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-h--HHHHHHHHhcccCCcEEE
Q 022411           17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-G--DQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        17 ~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~--~~~L~ei~RvLKPGG~l~   92 (297)
                      ..|+..|+++.|++.++.++... ..++.+..+++..+++ +++||+|++..++|+++ .  ..++++++++|+|||+++
T Consensus        53 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          53 YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            44556789999999998776554 4579999999998876 67899999999999987 2  579999999999999999


Q ss_pred             EEecC
Q 022411           93 IYKKL   97 (297)
Q Consensus        93 i~~~~   97 (297)
                      +....
T Consensus       132 ~~~~~  136 (198)
T d2i6ga1         132 IVAAM  136 (198)
T ss_dssp             EEEEB
T ss_pred             EEEec
Confidence            88654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.44  E-value=1.1e-07  Score=83.20  Aligned_cols=100  Identities=16%  Similarity=0.203  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCC
Q 022411           26 NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSD  100 (297)
Q Consensus        26 e~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~  100 (297)
                      +.|++.++++....  ..++.++.+|+.. +. ..+||+|++...+|+++.   ..+|++++|+|||||+|+|.+.....
T Consensus       113 ~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~  190 (253)
T d1tw3a2         113 AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH  190 (253)
T ss_dssp             TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred             HHHHHHHHHHHHHhhcccchhhccccchh-hc-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            45777777665443  4679999999854 22 357999999999998873   47899999999999999999864321


Q ss_pred             ccc---hHH---------------HHHHHHHHHHHCCcccccchh
Q 022411          101 KGD---VDK---------------AISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus       101 ~g~---~~~---------------~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .+.   ...               +.+++...+..+||..++...
T Consensus       191 ~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~  235 (253)
T d1tw3a2         191 ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ  235 (253)
T ss_dssp             GGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEE
Confidence            111   000               135677789999998776543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.41  E-value=8.5e-08  Score=82.85  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-ccCCCC----hHHHHHHHHhcccCCcEEE
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-SSHELP----GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~~~~~~----~~~~L~ei~RvLKPGG~l~   92 (297)
                      .++..|+++.|++.|++++.....++.++++|+..++++ ++||+|++.+ +++++.    ...+++++++.|||||.|+
T Consensus        61 ~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_          61 NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            345668999999999988776667899999999998865 6899999864 456654    3578999999999999998


Q ss_pred             EEec
Q 022411           93 IYKK   96 (297)
Q Consensus        93 i~~~   96 (297)
                      +..+
T Consensus       140 ~~~~  143 (246)
T d1y8ca_         140 FDIN  143 (246)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.7e-08  Score=83.90  Aligned_cols=106  Identities=19%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCe------------------------------EE-E----EccCCCCCCCCCcccEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQI------------------------------IT-Q----ASSLSQLPVESFSIDTV   63 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v------------------------------~~-~----~~d~~~Lp~~d~sfD~V   63 (297)
                      |+..|+++.|++.|++++.......                              .. .    ..+....|+++++||+|
T Consensus        77 v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  156 (257)
T d2a14a1          77 ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCV  156 (257)
T ss_dssp             EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEE
T ss_pred             EEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEE
Confidence            4566899999999988764322111                              01 1    11223347789999999


Q ss_pred             EeccccCCCC-----hHHHHHHHHhcccCCcEEEEEecCCCCccc--------hHHHHHHHHHHHHHCCccccc
Q 022411           64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKLTSDKGD--------VDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        64 ls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~--------~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ++.+.+||++     ...++++++|+|||||+|++.++.......        .....+.++..|..|||..++
T Consensus       157 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~  230 (257)
T d2a14a1         157 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQ  230 (257)
T ss_dssp             EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             eehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEE
Confidence            9999998874     246899999999999999998876432100        001245788899999997544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.30  E-value=1.7e-06  Score=73.98  Aligned_cols=126  Identities=16%  Similarity=0.019  Sum_probs=83.9

Q ss_pred             cccCceEEEeecCCccC--------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecc-c
Q 022411            4 GKMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSIS-S   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~-~   68 (297)
                      ++-|.+||.|--|+..+              ..|+++.|++.++++++. ..++.++.+++...+.....+|.+...+ .
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEeeccCccccccccceEEEEEec
Confidence            46688899886655433              347778999999887654 4689999999988777666666554332 3


Q ss_pred             cCCCC-hHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411           69 SHELP-GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV  131 (297)
Q Consensus        69 ~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~  131 (297)
                      +++.. ...++.+++|+|||||++++......  ...++.......... ..+||..++.....|.
T Consensus       133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~-l~~gf~i~E~i~L~P~  197 (209)
T d1nt2a_         133 IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGDFKIVKHGSLMPY  197 (209)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTTSEEEEEEECTTT
T ss_pred             ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHH-HHcCCEEEEEEccCCC
Confidence            33334 67899999999999999998764311  112223333333333 3589988776555554

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=4.5e-07  Score=80.65  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411           21 VSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..|+.+++++.|+++.+..    ..++.++++|+...++++++||.|+..     ++ +..++.++.|+|||||+|++..
T Consensus       126 ~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         126 SYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             EECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe-----cCCHHHHHHHHHhccCCCCEEEEEe
Confidence            4467789999999876542    468999999999999999999999863     34 6688999999999999999887


Q ss_pred             cCCCCccchHHHHHHHHHHHH-HCCcccccchh
Q 022411           96 KLTSDKGDVDKAISALEGKLL-LAGFLDAQRIQ  127 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~-laGFv~v~~~~  127 (297)
                      +.-      .+ .+.+...|. ..||.+++..+
T Consensus       201 P~i------~Q-v~~~~~~l~~~~~f~~i~~~E  226 (264)
T d1i9ga_         201 ATV------TQ-LSRIVEALRAKQCWTEPRAWE  226 (264)
T ss_dssp             SSH------HH-HHHHHHHHHHHSSBCCCEEEC
T ss_pred             Ccc------Ch-HHHHHHHHHHcCCeecceEEE
Confidence            652      22 113333443 57899876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=80.87  Aligned_cols=119  Identities=15%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCC--CCCCCCCcccEEEe-----
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLS-----   65 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~--~Lp~~d~sfD~Vls-----   65 (297)
                      .|.+||-|--|+.             ++..++++.|++.|+++......++..+.+++.  ..++++++||.|+.     
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            4567777655443             335588899999999887776667777777654  34677899999874     


Q ss_pred             ccccCCCC-hHHHHHHHHhcccCCcEEEEEecCC------CCccchHHH-HHHHHHHHHHCCccccc
Q 022411           66 ISSSHELP-GDQLLEEISRVLKPGGTILIYKKLT------SDKGDVDKA-ISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        66 ~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~------~~~g~~~~~-~~~l~~~L~laGFv~v~  124 (297)
                      ....++++ ...++++++|+|||||+|++.+...      ......... .+.+...|..+||...+
T Consensus       133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~  199 (229)
T d1zx0a1         133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN  199 (229)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred             ccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence            33445555 6789999999999999998754321      111111111 23455678889997654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.2e-07  Score=80.68  Aligned_cols=79  Identities=14%  Similarity=-0.059  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCe--EEEEccCC------CCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCC
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQI--ITQASSLS------QLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPG   88 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v--~~~~~d~~------~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPG   88 (297)
                      +..|.++.|++.|+++++..  ..++  .+...+++      ..++++++||+|++..++||++ +..++++++++||||
T Consensus        74 ~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg  153 (280)
T d1jqea_          74 EVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  153 (280)
T ss_dssp             EEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             EEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC
Confidence            35578889999998876543  2333  34444443      2367789999999999999998 889999999999999


Q ss_pred             cEEEEEecCC
Q 022411           89 GTILIYKKLT   98 (297)
Q Consensus        89 G~l~i~~~~~   98 (297)
                      |.|++..+..
T Consensus       154 G~l~i~~~~~  163 (280)
T d1jqea_         154 AKMLIIVVSG  163 (280)
T ss_dssp             EEEEEEEECT
T ss_pred             CEEEEEEecC
Confidence            9999887654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.16  E-value=2.4e-06  Score=74.87  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +..|+ +++++.++++++..  ..++.++.++... |++ ..||+|+....+|+++.   ..+|++++|+|||||+|+|.
T Consensus       109 ~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         109 TLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             EEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence            33344 45677777665443  5679999888764 444 45999999999998873   47799999999999999999


Q ss_pred             ecCCCC---ccc-hHH---------------HHHHHHHHHHHCCcccccch
Q 022411           95 KKLTSD---KGD-VDK---------------AISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        95 ~~~~~~---~g~-~~~---------------~~~~l~~~L~laGFv~v~~~  126 (297)
                      +.....   ... ...               +.+++...+..+||..++..
T Consensus       186 d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~  236 (256)
T d1qzza2         186 DRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER  236 (256)
T ss_dssp             ECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred             EeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEE
Confidence            864211   010 000               13567777888888876654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=1.3e-06  Score=74.75  Aligned_cols=87  Identities=17%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             cccCceEEEeecCCccC---------------hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411            4 GKMQSAVLALSEDKILP---------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS   67 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---------------~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~   67 (297)
                      ++.|++||-+-.|+...               ..+..++|++.|+++.+.. ..++.++.+++...++.+++||+|++..
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc
Confidence            56788999887665432               3356688999999887654 5689999999988888888999999999


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..++++     .++++.|||||+|++..
T Consensus       153 ~~~~~p-----~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         153 GVDEVP-----ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             BBSCCC-----HHHHHHEEEEEEEEEEB
T ss_pred             cHHHhH-----HHHHHhcCCCcEEEEEE
Confidence            888876     35788999999998743

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=4.4e-06  Score=74.35  Aligned_cols=91  Identities=9%  Similarity=0.118  Sum_probs=70.1

Q ss_pred             cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|++||-+--             +..|+..++++++++.|++++...  ...+.+...+...+   +++||.|++...
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~  126 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEA  126 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhH
Confidence            456777777643             344455688899999998887654  34577777776655   478999999999


Q ss_pred             cCCCC-h--HHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELP-G--DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~-~--~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ++|+. .  ..++++++|+|||||+++|....
T Consensus       127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         127 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             HHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            98886 3  68999999999999999997643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.09  E-value=6.6e-07  Score=73.05  Aligned_cols=83  Identities=8%  Similarity=0.018  Sum_probs=66.8

Q ss_pred             cCCccChHHHHHHHHHHHHHHhhhc-------------CCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC---hHHH
Q 022411           15 EDKILPVSAVLNAIRDLGDEAVEQC-------------DPQIITQASSLSQLP-VESFSIDTVLSISSSHELP---GDQL   77 (297)
Q Consensus        15 ~~~~vt~~dlse~m~~~A~~~~~~~-------------~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~---~~~~   77 (297)
                      +|..|+..|+++.|++.|++++...             ...+.+..+++..++ ....+||+|++...+++++   ....
T Consensus        41 ~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~  120 (201)
T d1pjza_          41 QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERY  120 (201)
T ss_dssp             HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHH
T ss_pred             cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccceeEEEEEeeeEecchhhhHHH
Confidence            4666777899999999999876332             345788889988876 4457899999999999887   2688


Q ss_pred             HHHHHhcccCCcEEEEEecC
Q 022411           78 LEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +++++++|||||++++....
T Consensus       121 ~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_         121 VQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             HHHHHHHSCSEEEEEEEEES
T ss_pred             HHHHHHhcCCCcEEEEEEcc
Confidence            99999999999999877654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=1.2e-06  Score=77.16  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=79.7

Q ss_pred             cccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEec
Q 022411            4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSI   66 (297)
Q Consensus         4 ~~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~   66 (297)
                      ++.|.+||=+-.|+-               |+.-|..+++++.|+++.+..  ..++.+..+|+... +++.+||.|+..
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld  161 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD  161 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec
Confidence            455667776655433               333466788999999887653  56899999999876 568899999874


Q ss_pred             cccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           67 SSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        67 ~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                      ..-    +..++.++.++|||||+|+++.+.-      . -.+.+...|..+||.+++..
T Consensus       162 ~p~----p~~~l~~~~~~LKpGG~lv~~~P~i------~-Qv~~~~~~l~~~gf~~i~~~  210 (250)
T d1yb2a1         162 IPD----PWNHVQKIASMMKPGSVATFYLPNF------D-QSEKTVLSLSASGMHHLETV  210 (250)
T ss_dssp             CSC----GGGSHHHHHHTEEEEEEEEEEESSH------H-HHHHHHHHSGGGTEEEEEEE
T ss_pred             CCc----hHHHHHHHHHhcCCCceEEEEeCCc------C-hHHHHHHHHHHCCCceeEEE
Confidence            321    5578999999999999999887642      1 12345566778999877554

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.8e-07  Score=79.54  Aligned_cols=72  Identities=19%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             CCCCCCcccEEEeccccCCCC-----hHHHHHHHHhcccCCcEEEEEecCCCCc---cc-----hHHHHHHHHHHHHHCC
Q 022411           53 LPVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYKKLTSDK---GD-----VDKAISALEGKLLLAG  119 (297)
Q Consensus        53 Lp~~d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~-----~~~~~~~l~~~L~laG  119 (297)
                      .++..++||+|++.+.+|+++     ...++++++|+|||||.|++......+.   +.     .....+.+...|..+|
T Consensus       151 ~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aG  230 (263)
T d2g72a1         151 GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG  230 (263)
T ss_dssp             SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred             CCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCC
Confidence            345677899999999998875     2678999999999999999987654321   10     1113458888999999


Q ss_pred             ccccc
Q 022411          120 FLDAQ  124 (297)
Q Consensus       120 Fv~v~  124 (297)
                      |..++
T Consensus       231 f~v~~  235 (263)
T d2g72a1         231 YKVRD  235 (263)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            98654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=4.3e-07  Score=80.23  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             cccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            4 GKMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         4 ~~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .+.|.+||-+--|+            .|+..|+++.|++.|+++++....++.+..+++.. +++.++||+|+++...+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhcccccc
Confidence            35677777665443            34455888899999999887666678888888765 356789999998753332


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                        ...++.++.|+|||||+|++......       ....+...+..+||..++.
T Consensus       197 --l~~l~~~~~~~LkpGG~lilSgil~~-------~~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         197 --HAALAPRYREALVPGGRALLTGILKD-------RAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEEEEGG-------GHHHHHHHHHHTTCEEEEE
T ss_pred             --HHHHHHHHHHhcCCCcEEEEEecchh-------hHHHHHHHHHHCCCEEEEE
Confidence              46788999999999999998754321       1236677788899987654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=2.4e-06  Score=72.79  Aligned_cols=75  Identities=13%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCCh---------HHHHHHHHhcccCC
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELPG---------DQLLEEISRVLKPG   88 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~~---------~~~L~ei~RvLKPG   88 (297)
                      ..|++..++..|.+++.+. ..|+.++.+|+..+.  ++++++|.|+..+...|...         ..++.+++|+||||
T Consensus        58 GiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1          58 GIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             EECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             EeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            4467788888887776554 568999999998876  88999999999987766542         47999999999999


Q ss_pred             cEEEEEe
Q 022411           89 GTILIYK   95 (297)
Q Consensus        89 G~l~i~~   95 (297)
                      |.|+|.+
T Consensus       138 G~l~i~T  144 (204)
T d2fcaa1         138 GSIHFKT  144 (204)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            9999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.00  E-value=3.2e-06  Score=70.27  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=79.6

Q ss_pred             ccCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            5 KMQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         5 ~~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      +.|++||-+--|+            .|+..|+++.|++.|+++++..  ..+++++++++..++++...||.|++....+
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~  111 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG  111 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT
T ss_pred             CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc
Confidence            3456666665544            3456688999999999987664  3589999999998888889999999876544


Q ss_pred             CCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           71 ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        71 ~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      +  ...++.++.+.|||||++++.....       +....+...+...||.
T Consensus       112 ~--~~~~~~~~~~~LkpgG~lvi~~~~~-------e~~~~~~~~l~~~~~~  153 (186)
T d1l3ia_         112 E--LQEILRIIKDKLKPGGRIIVTAILL-------ETKFEAMECLRDLGFD  153 (186)
T ss_dssp             C--HHHHHHHHHHTEEEEEEEEEEECBH-------HHHHHHHHHHHHTTCC
T ss_pred             c--chHHHHHHHHHhCcCCEEEEEeecc-------ccHHHHHHHHHHcCCC
Confidence            3  4678999999999999998876432       1222445566667773

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.00  E-value=2.4e-06  Score=71.44  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             cChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC--hHHHHHHHHhcccCCcEEEE
Q 022411           19 LPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQLPVESFSIDTVLSISSSHELP--GDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~--~~~~L~ei~RvLKPGG~l~i   93 (297)
                      ++..|+++.+++.++++++..   +.++.+..+|+.. ++++++||+|+++..+|+..  ...++.++.|.|||||++++
T Consensus        77 v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_          77 TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            345588899999998876543   4568999999876 56789999999998877654  36789999999999999987


Q ss_pred             Eec
Q 022411           94 YKK   96 (297)
Q Consensus        94 ~~~   96 (297)
                      ...
T Consensus       156 ~~~  158 (194)
T d1dusa_         156 VIQ  158 (194)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2e-06  Score=73.65  Aligned_cols=82  Identities=9%  Similarity=-0.066  Sum_probs=66.2

Q ss_pred             CCccChHHHHHHHHHHHHHHhhh------------------cCCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC---
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQ------------------CDPQIITQASSLSQLP-VESFSIDTVLSISSSHELP---   73 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~------------------~~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~---   73 (297)
                      |..|+..|+|+.+++.|+++...                  ...++.+.++|+..++ ....+||+|+....+|+++   
T Consensus        67 G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~  146 (229)
T d2bzga1          67 GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD  146 (229)
T ss_dssp             TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG
T ss_pred             CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh
Confidence            55667779999999998875432                  1357899999998774 6678999999999999887   


Q ss_pred             hHHHHHHHHhcccCCcEEEEEecC
Q 022411           74 GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        74 ~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ....++++.|+|||||++++....
T Consensus       147 r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         147 RKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hHHHHHHHHhhcCCcceEEEEEcc
Confidence            367899999999999998777543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=2.8e-05  Score=67.17  Aligned_cols=135  Identities=16%  Similarity=0.045  Sum_probs=86.2

Q ss_pred             cccCceEEEeecCCccC---------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC---CCCCCCCcccEEEe
Q 022411            4 GKMQSAVLALSEDKILP---------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS---QLPVESFSIDTVLS   65 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt---------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~---~Lp~~d~sfD~Vls   65 (297)
                      ++.|.+||.|--++..+               ..|+++.|++.++++++. ..++..+..++.   .++.....+|+|+.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-~~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-RRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-CTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-cCCceEEEEECCCcccccccccceEEEEE
Confidence            56788999996655444               225678889988876543 457777777664   33445567888876


Q ss_pred             ccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhccccCccceeEeeee
Q 022411           66 ISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVPAEVVSFGVK  142 (297)
Q Consensus        66 ~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~~~~~i~  142 (297)
                      ..  ++.. ...++.++.+.|||||++++......  ......... .....+...||..++.....|...+   ++.+.
T Consensus       150 d~--~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~-~~v~~l~~~gf~iie~i~L~p~~~~---H~~vv  223 (227)
T d1g8aa_         150 DV--AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVF-REVERELSEYFEVIERLNLEPYEKD---HALFV  223 (227)
T ss_dssp             CC--CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHH-HHHHHHHHTTSEEEEEEECTTTSSS---EEEEE
T ss_pred             Ec--cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHH-HHHHHHHHcCCEEEEEEcCCCCCCc---eEEEE
Confidence            53  3334 57899999999999999998754321  112222222 2334567789988776555553212   34555


Q ss_pred             ecC
Q 022411          143 GKK  145 (297)
Q Consensus       143 akK  145 (297)
                      ++|
T Consensus       224 ~rK  226 (227)
T d1g8aa_         224 VRK  226 (227)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            655

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=7.2e-06  Score=70.65  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             ccccCceEEEeecCCcc---------------ChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCCCCCCccc
Q 022411            3 TGKMQSAVLALSEDKIL---------------PVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSID   61 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~v---------------t~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp~~d~sfD   61 (297)
                      .++.|++||-+-.|+.-               ...|..++|++.|++++++.      ..++.++.+|+...+.+.+.||
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD  152 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  152 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence            35778899999776542               12255678888888776432      4678999999998888899999


Q ss_pred             EEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           62 TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        62 ~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +|++..+.++++     .++.+.|||||+|++...
T Consensus       153 ~I~~~~~~~~ip-----~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         153 AIHVGAAAPVVP-----QALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEEECSBBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred             hhhhhcchhhcC-----HHHHhhcCCCcEEEEEEc
Confidence            999998888776     357899999999998543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=9.6e-06  Score=72.65  Aligned_cols=91  Identities=8%  Similarity=0.066  Sum_probs=68.5

Q ss_pred             cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|++||-|--             |..++..+++++..+.|++++...  ...+.+...+.   ++.+++||.|+|.-.
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i~sie~  135 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIVSLGA  135 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceEeechh
Confidence            456777877744             334445578888888888876554  34577777665   456789999999988


Q ss_pred             cCCCCh----------HHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELPG----------DQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~~----------~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.|+..          +.+++++.|+|||||++++....
T Consensus       136 ~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         136 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            877652          68999999999999999998754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=1.1e-05  Score=72.06  Aligned_cols=91  Identities=13%  Similarity=0.086  Sum_probs=71.2

Q ss_pred             cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|++||-+--             |..|+..+++.+.++.|++++++.  ..++.+..+|...+|   .+||.|++...
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~  136 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA  136 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehh
Confidence            456777777743             344555678888888888876543  567899999988775   68999999998


Q ss_pred             cCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411           69 SHELP---GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +.|+.   ...+++++.|+|||||++++....
T Consensus       137 ~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         137 FEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            88774   378999999999999999987654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.76  E-value=2.8e-05  Score=66.03  Aligned_cols=75  Identities=19%  Similarity=0.112  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHhcccCC
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPG   88 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPG   88 (297)
                      ..|++..++..|..++.+. ..|+.++.+++..+.  +++.++|.|+.++.-.|..         ...+|++++|+||||
T Consensus        60 Gid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1          60 GIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             EEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             EEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            4467778888887766554 578999999998875  7899999999988755543         268999999999999


Q ss_pred             cEEEEEe
Q 022411           89 GTILIYK   95 (297)
Q Consensus        89 G~l~i~~   95 (297)
                      |.|++.+
T Consensus       140 G~l~i~T  146 (204)
T d1yzha1         140 GEIHFKT  146 (204)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            9998875

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=1.6e-05  Score=70.24  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +.-|.+++|++.|+++.+..  ..++.+..+++.. .++...||.|+.     +++ +..++.++.++|||||+|++..+
T Consensus       132 ~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         132 FAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             EEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeC
Confidence            34477889999999887654  3567788877643 466788999875     344 67889999999999999998876


Q ss_pred             CCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411           97 LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus        97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~  127 (297)
                      .-       ...+.+...|..+||.+++..+
T Consensus       206 ~~-------~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         206 TT-------NQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             SH-------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             cc-------cHHHHHHHHHHHCCceeEEEEE
Confidence            42       1223555677889999876553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=4.6e-06  Score=73.74  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=54.5

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhcC-----CCeEEEEccCCC----CCCCCCcccEEEecc-ccCCCC--------hHHH
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQCD-----PQIITQASSLSQ----LPVESFSIDTVLSIS-SSHELP--------GDQL   77 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~~-----~~v~~~~~d~~~----Lp~~d~sfD~Vls~~-~~~~~~--------~~~~   77 (297)
                      +..|+..|+++.|+++|+++.....     .......+++..    +| ...+||.|++.. +++|++        ...+
T Consensus        78 g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~  156 (292)
T d1xvaa_          78 GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLA  156 (292)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHH
T ss_pred             CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHH
Confidence            4456677999999999987654322     123344444432    23 246899998764 566654        2469


Q ss_pred             HHHHHhcccCCcEEEEEec
Q 022411           78 LEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~   96 (297)
                      |++++|+|||||+|++..+
T Consensus       157 l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         157 LKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHcCcCcEEEEeec
Confidence            9999999999999988654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.5e-05  Score=72.14  Aligned_cols=91  Identities=11%  Similarity=-0.003  Sum_probs=63.2

Q ss_pred             ccCceEEEeecCCccC--------------hHHHHHHHHHHHHHHhhh----------cCCCeEEEEccCCCCCCCCCcc
Q 022411            5 KMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQ----------CDPQIITQASSLSQLPVESFSI   60 (297)
Q Consensus         5 ~~~~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~~----------~~~~v~~~~~d~~~Lp~~d~sf   60 (297)
                      +.+++||-|-.|....              ..|+++.|.+.|+.+.+.          ...++.++++|+.++|+.+..|
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            4456666665544322              336666777777654322          2567999999999999988877


Q ss_pred             --cEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           61 --DTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        61 --D~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                        |+|+++. +.+.+ ....|.|++|+|||||++++...
T Consensus       230 ~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         230 NTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             HCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence              4566544 33444 67899999999999999987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=6.1e-05  Score=68.34  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHHHhhhc------------CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCChHHHHHHHHhccc
Q 022411           21 VSAVLNAIRDLGDEAVEQC------------DPQIITQASSLSQLP--VESFSIDTVLSISSSHELPGDQLLEEISRVLK   86 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~------------~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLK   86 (297)
                      ..|+.+++++.|+++.+..            ..++.+..+|+....  +++.+||.|+.-...    +..++.++.++||
T Consensus       128 t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~----P~~~l~~~~~~LK  203 (324)
T d2b25a1         128 SFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN----PHVTLPVFYPHLK  203 (324)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS----TTTTHHHHGGGEE
T ss_pred             EecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcC----HHHHHHHHHHhcc
Confidence            3466788888888765431            357999999987653  467789999863321    4568999999999


Q ss_pred             CCcEEEEEecCCCCccchHHHHHHHHHHHHH--CCcccccchh
Q 022411           87 PGGTILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDAQRIQ  127 (297)
Q Consensus        87 PGG~l~i~~~~~~~~g~~~~~~~~l~~~L~l--aGFv~v~~~~  127 (297)
                      |||+|++..+.-      .. ...+...|..  .||++++..+
T Consensus       204 pGG~lv~~~P~i------~Q-v~~~~~~l~~~~~~f~~i~~~E  239 (324)
T d2b25a1         204 HGGVCAVYVVNI------TQ-VIELLDGIRTCELALSCEKISE  239 (324)
T ss_dssp             EEEEEEEEESSH------HH-HHHHHHHHHHHTCCEEEEEEEC
T ss_pred             CCCEEEEEeCCH------HH-HHHHHHHHHHcCCCceeeEEEE
Confidence            999999887542      21 1123334443  4788887554

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.40  E-value=8.7e-05  Score=63.84  Aligned_cols=86  Identities=13%  Similarity=0.021  Sum_probs=64.4

Q ss_pred             cccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            4 GKMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         4 ~~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      ++.|++||-+-.|+.-.            ..+..+++.+.|+++... ..++.++.+|+.....+.+.||+|++..+..+
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~  146 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLGYEEEKPYDRVVVWATAPT  146 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred             hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc-ccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence            46788999997766422            234557888888776543 56899999998765556788999999887777


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEe
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ++     ..+.+.|||||+|++-.
T Consensus       147 ip-----~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         147 LL-----CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             CC-----HHHHHTEEEEEEEEEEE
T ss_pred             hh-----HHHHHhcCCCCEEEEEE
Confidence            66     34678899999998753

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.34  E-value=0.0001  Score=63.29  Aligned_cols=89  Identities=9%  Similarity=0.059  Sum_probs=66.1

Q ss_pred             ccccCceEEEeecCCc--------------------cChHHHHHHHHHHHHHHhhh------cCCCeEEEEccCCCCCCC
Q 022411            3 TGKMQSAVLALSEDKI--------------------LPVSAVLNAIRDLGDEAVEQ------CDPQIITQASSLSQLPVE   56 (297)
Q Consensus         3 ~~~~~~~VLll~~~~~--------------------vt~~dlse~m~~~A~~~~~~------~~~~v~~~~~d~~~Lp~~   56 (297)
                      .++.|++||.+-.|+.                    |...+..+++.+.|+++...      ...++.+..+|......+
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc
Confidence            3567899999977655                    22334446777777765422      245899999999887777


Q ss_pred             CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        57 d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .+.||+|++..+...++     ..+.+.|||||++++...
T Consensus       157 ~~~fD~Iiv~~a~~~~p-----~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         157 NAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             GCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred             ccceeeEEEEeechhch-----HHHHHhcCCCcEEEEEEe
Confidence            88999999998877766     246789999999987543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.0004  Score=62.11  Aligned_cols=86  Identities=20%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSH   70 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~   70 (297)
                      .|.+||-|--|+.             |+..+.+ +|...|++....  ...++.++.+++..+++++++||+|++....+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            3567777755542             2233444 355666654433  35679999999999999999999999976544


Q ss_pred             CCC----hHHHHHHHHhcccCCcEEE
Q 022411           71 ELP----GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        71 ~~~----~~~~L~ei~RvLKPGG~l~   92 (297)
                      .+.    ...++.++.|+|||||+++
T Consensus       117 ~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         117 FLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccchhHHHHHHHHHhccCCCeEEE
Confidence            332    5778999999999999986

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.0005  Score=58.56  Aligned_cols=87  Identities=13%  Similarity=0.127  Sum_probs=65.6

Q ss_pred             cccCceEEEeecCCcc-------------ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411            4 GKMQSAVLALSEDKIL-------------PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSS   69 (297)
Q Consensus         4 ~~~~~~VLll~~~~~v-------------t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~   69 (297)
                      ++.|++||.+-.|+.-             +..+..+.+.+.|+++.... ..++.++.+|........+.||+|+...+.
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA  155 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccc
Confidence            4567888888665432             23345567888888877665 578999999998776678899999998887


Q ss_pred             CCCChHHHHHHHHhcccCCcEEEEEe
Q 022411           70 HELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        70 ~~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      .++|.     .+...|||||+|++-.
T Consensus       156 ~~ip~-----~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         156 PKIPE-----PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             SSCCH-----HHHHTEEEEEEEEEEE
T ss_pred             ccCCH-----HHHHhcCCCCEEEEEE
Confidence            77762     3567799999998654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00053  Score=60.54  Aligned_cols=98  Identities=15%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             cChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEeccccC-------------CCC-----------
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP-----------   73 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~-------------~~~-----------   73 (297)
                      ++..|+++..++.|+++++... .++.++++|+.. ++++..||+|+++-.+.             +-|           
T Consensus       135 v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl  213 (274)
T d2b3ta1         135 IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM  213 (274)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHT
T ss_pred             eeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccc
Confidence            3456889999999999886654 479999999865 45678999999985321             111           


Q ss_pred             --hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411           74 --GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR  125 (297)
Q Consensus        74 --~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~  125 (297)
                        ...++.+..+.|+|||.+++.- +..+   .    ..+...+..+||.+++.
T Consensus       214 ~~~~~i~~~a~~~L~~~G~l~lEi-g~~q---~----~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         214 ADIVHIIEQSRNALVSGGFLLLEH-GWQQ---G----EAVRQAFILAGYHDVET  259 (274)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEC-CSSC---H----HHHHHHHHHTTCTTCCE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEEE-CchH---H----HHHHHHHHHCCCCeEEE
Confidence              1357888899999999998743 2211   1    25667788899987754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.91  E-value=0.0008  Score=58.13  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCC--ccchH---------
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSD--KGDVD---------  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~--~g~~~---------  105 (297)
                      ..+++++.+|+-. |++  ..|+|+....+|.++.   ..+|++++++|+|||+|+|.+..-..  .....         
T Consensus       123 ~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~  199 (244)
T d1fp1d2         123 LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDN  199 (244)
T ss_dssp             CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHH
T ss_pred             CCCeEEecCCccc-ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHH
Confidence            5689999999753 333  4599999999998873   57899999999999999999863111  01110         


Q ss_pred             ----------HHHHHHHHHHHHCCcccccchh
Q 022411          106 ----------KAISALEGKLLLAGFLDAQRIQ  127 (297)
Q Consensus       106 ----------~~~~~l~~~L~laGFv~v~~~~  127 (297)
                                .+.+++...|..|||.+++...
T Consensus       200 ~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         200 LMFITVGGRERTEKQYEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             HHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHhhCCCcCCCHHHHHHHHHHcCCCceEEEe
Confidence                      0135778889999999887643

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00059  Score=60.43  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=60.0

Q ss_pred             cCceEEEeecCCcc-------------ChHHHHHHHHHHHHHHhh-hcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            6 MQSAVLALSEDKIL-------------PVSAVLNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         6 ~~~~VLll~~~~~v-------------t~~dlse~m~~~A~~~~~-~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      .|.+||-|-.|+..             ...+.++.|...++...+ ....++.++.+++..+++++.+||+|++....+.
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~  114 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF  114 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence            46677877665532             222444455433322222 2356899999999999999999999999765554


Q ss_pred             CC----hHHHHHHHHhcccCCcEEE
Q 022411           72 LP----GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        72 ~~----~~~~L~ei~RvLKPGG~l~   92 (297)
                      ..    .+.++....|.|||||+++
T Consensus       115 ~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         115 LLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccHHHHHHHHhcCCCCcEEe
Confidence            33    4677878889999999997

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.0014  Score=58.28  Aligned_cols=53  Identities=17%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----hHHHHHHHHhcccCCcEEE
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTIL   92 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~   92 (297)
                      ..++.++.+++..++++.++||+|++....+.+.    .+.++..+.|.|||||+++
T Consensus        81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            5579999999999999999999999876544432    4788999999999999997

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.0013  Score=54.62  Aligned_cols=52  Identities=13%  Similarity=0.162  Sum_probs=39.7

Q ss_pred             eEEEEccCCC-CCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411           43 IITQASSLSQ-LPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY   94 (297)
Q Consensus        43 v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~   94 (297)
                      +.+...+... .+.+.+.||+|++.++++++++   ..+++.+++.|+|||.|++-
T Consensus       115 v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         115 VEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            3444444432 2344678999999999999983   68999999999999998864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.86  E-value=0.013  Score=50.08  Aligned_cols=84  Identities=13%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCC---cEEEEEecCCC-Cc-cch-H-----
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG---GTILIYKKLTS-DK-GDV-D-----  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPG---G~l~i~~~~~~-~~-g~~-~-----  105 (297)
                      ..+++++.+|+.. |.+  .+|+++....+|.++.   ..+|+.++++|+||   |+++|.+..-. .. ... .     
T Consensus       122 ~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~  198 (244)
T d1fp2a2         122 SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLL  198 (244)
T ss_dssp             BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHH
T ss_pred             cCceEEEecCccc-CCC--CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHH
Confidence            5689999999865 333  5799999999998883   57899999999999   78888875311 10 100 0     


Q ss_pred             ------------HHHHHHHHHHHHCCcccccch
Q 022411          106 ------------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       106 ------------~~~~~l~~~L~laGFv~v~~~  126 (297)
                                  .+.+++...+..+||..++..
T Consensus       199 ~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~  231 (244)
T d1fp2a2         199 MDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS  231 (244)
T ss_dssp             HHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence                        123577888899999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0069  Score=53.93  Aligned_cols=91  Identities=11%  Similarity=-0.017  Sum_probs=64.0

Q ss_pred             CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC----CCCCCCcccEEEecccc
Q 022411            7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ----LPVESFSIDTVLSISSS   69 (297)
Q Consensus         7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~----Lp~~d~sfD~Vls~~~~   69 (297)
                      |.+||-+..++.            |+..|+++.+++.|+++++.. ..++.++.+|+..    ++.....||+|++....
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~  225 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA  225 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence            566777655433            445588899999999887654 3579999998754    44456799999987532


Q ss_pred             CCC---C-------hHHHHHHHHhcccCCcEEEEEecC
Q 022411           70 HEL---P-------GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        70 ~~~---~-------~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ...   .       -..++....++|||||.|++..-.
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            111   1       135788899999999999887643

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.67  E-value=0.012  Score=50.02  Aligned_cols=84  Identities=13%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecCCC--CccchH---------
Q 022411           40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKLTS--DKGDVD---------  105 (297)
Q Consensus        40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~---------  105 (297)
                      ..++.++.+|+.. |+|.  .|+++....+|.++   ...+|++++++|+|||+++|.+..-.  ......         
T Consensus       123 ~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~  199 (243)
T d1kyza2         123 YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDV  199 (243)
T ss_dssp             CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHH
T ss_pred             CCceEEecccccc-cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHH
Confidence            5689999999853 3443  45666667777766   36899999999999999999875411  101110         


Q ss_pred             -----------HHHHHHHHHHHHCCcccccch
Q 022411          106 -----------KAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus       106 -----------~~~~~l~~~L~laGFv~v~~~  126 (297)
                                 .+.++++..+..|||.+++..
T Consensus       200 ~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~  231 (243)
T d1kyza2         200 IMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH  231 (243)
T ss_dssp             HHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred             HHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence                       013567778888999887654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.22  E-value=0.0099  Score=52.90  Aligned_cols=94  Identities=11%  Similarity=-0.054  Sum_probs=65.0

Q ss_pred             cccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC----CCCCCCcccEEE
Q 022411            4 GKMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ----LPVESFSIDTVL   64 (297)
Q Consensus         4 ~~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~----Lp~~d~sfD~Vl   64 (297)
                      ++.|.+||-+-.++             .|+..|+++.+++.++++++..  ..++.++.+|+..    ++.....||+|+
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            34566777664432             3456688899999999887543  3478899998753    344567999999


Q ss_pred             eccccCCCC----------hHHHHHHHHhcccCCcEEEEEecC
Q 022411           65 SISSSHELP----------GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        65 s~~~~~~~~----------~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +........          -..++....++|||||.|++....
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            865422111          134778889999999999887644

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0067  Score=56.12  Aligned_cols=92  Identities=15%  Similarity=0.002  Sum_probs=56.7

Q ss_pred             cccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhhc----------CCCeEE-EEccCCCCCCCC-
Q 022411            4 GKMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQC----------DPQIIT-QASSLSQLPVES-   57 (297)
Q Consensus         4 ~~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~~----------~~~v~~-~~~d~~~Lp~~d-   57 (297)
                      ++.|++||-|-.|...              ...|+++.|++.|+++++..          ...+.+ ..++....++.+ 
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence            4556777777654442              34477888888888765431          122333 344443333222 


Q ss_pred             --CcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411           58 --FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        58 --~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                        ..+|+|+.+. +++.+ ....|.+++|+|||||++++.+.
T Consensus       294 ~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         294 LIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             HGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence              2457777654 33444 67899999999999999987653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.79  E-value=0.013  Score=50.61  Aligned_cols=113  Identities=9%  Similarity=0.016  Sum_probs=72.9

Q ss_pred             cccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411            4 GKMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISS   68 (297)
Q Consensus         4 ~~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~   68 (297)
                      ++.|.+||-+.-|+             .|...|+.+...+.++++++.  ...++.+.++|+..++ ....||.|+....
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC
Confidence            45567777654433             333446777778888877654  3456999999998875 4578999987643


Q ss_pred             cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      ..   ...++.+..++|+|||.++++........ .....+.+.+.....||.
T Consensus       184 ~~---~~~~l~~a~~~l~~gG~lh~~~~~~~~~~-~~~~~e~~~~~~~~~g~~  232 (260)
T d2frna1         184 VR---THEFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYGYD  232 (260)
T ss_dssp             SS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTTCE
T ss_pred             Cc---hHHHHHHHHhhcCCCCEEEEEeccccccc-hhhHHHHHHHHHHHcCCc
Confidence            21   34678889999999999987764422100 011122455566778885

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.20  E-value=0.024  Score=46.80  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC-----CCCCCcccEEEecccc---------CCCC-hHHHHHHHHh
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL-----PVESFSIDTVLSISSS---------HELP-GDQLLEEISR   83 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L-----p~~d~sfD~Vls~~~~---------~~~~-~~~~L~ei~R   83 (297)
                      +...|.-++|++.|+++......++.++.++..++     .+..++||.|+.-+..         ..+. ....|....+
T Consensus        50 vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~  129 (192)
T d1m6ya2          50 IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAED  129 (192)
T ss_dssp             EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGG
T ss_pred             EEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHH
Confidence            34557778999999988766667899999988765     3556899999876532         2233 4688999999


Q ss_pred             cccCCcEEEEEecC
Q 022411           84 VLKPGGTILIYKKL   97 (297)
Q Consensus        84 vLKPGG~l~i~~~~   97 (297)
                      +|+|||++.+....
T Consensus       130 ~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2         130 LLNPGGRIVVISFH  143 (192)
T ss_dssp             GEEEEEEEEEEESS
T ss_pred             hcCCCCeeeeeccc
Confidence            99999999988754

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.12  E-value=0.0049  Score=51.89  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC------CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL------PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L------p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG   89 (297)
                      .+...+..+.+.+.|+++.+..  ..+|+++.++...+      .+....||+|+.-...........+.+..+.|||||
T Consensus        83 ~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGG  162 (214)
T d2cl5a1          83 RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGT  162 (214)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCc
Confidence            3444466678888888776553  35699999987543      244578999998642211113345778889999999


Q ss_pred             EEEEEe
Q 022411           90 TILIYK   95 (297)
Q Consensus        90 ~l~i~~   95 (297)
                      .+++-+
T Consensus       163 vIv~Dd  168 (214)
T d2cl5a1         163 VLLADN  168 (214)
T ss_dssp             EEEESC
T ss_pred             EEEEeC
Confidence            877644

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.71  E-value=0.14  Score=44.55  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHh-----hhcCCCeEEEEccCCCC--CCCCCcccEEEeccccC-----CCChHHHHHHHHhcccCCc
Q 022411           22 SAVLNAIRDLGDEAV-----EQCDPQIITQASSLSQL--PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGG   89 (297)
Q Consensus        22 ~dlse~m~~~A~~~~-----~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~-----~~~~~~~L~ei~RvLKPGG   89 (297)
                      -++-+++++.+++-.     ...++++..+.+|+...  ...++.||+|+.-..-.     .+....+++.+.+.|+|||
T Consensus       110 VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~G  189 (290)
T d1xj5a_         110 CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGG  189 (290)
T ss_dssp             EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEE
T ss_pred             ecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCc
Confidence            355556677766521     23478999999886422  23467899999754311     1224789999999999999


Q ss_pred             EEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           90 TILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        90 ~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      .+++.......  . ......+.+.+....+.
T Consensus       190 i~v~q~~s~~~--~-~~~~~~i~~~l~~vF~~  218 (290)
T d1xj5a_         190 VVCTQAESLWL--H-MDIIEDIVSNCREIFKG  218 (290)
T ss_dssp             EEEEECCCTTT--C-HHHHHHHHHHHHHHCSS
T ss_pred             EEEEecCCcHH--H-HHHHHHHHhhhhhhccc
Confidence            99987643211  1 12233455556555433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.13  Score=44.78  Aligned_cols=91  Identities=10%  Similarity=0.098  Sum_probs=59.6

Q ss_pred             CceEEEeecCCccC--------------hHHHHHHHHHHHHHHh-----hhcCCCeEEEEccCCC-CCCCCCcccEEEec
Q 022411            7 QSAVLALSEDKILP--------------VSAVLNAIRDLGDEAV-----EQCDPQIITQASSLSQ-LPVESFSIDTVLSI   66 (297)
Q Consensus         7 ~~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~-----~~~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~   66 (297)
                      -.+||+|-.|...+              ..++-+++++.+++-.     ...++++..+.+|+.. +--....||+|++-
T Consensus        79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1          79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence            34788886655433              2255567777776532     1237899999998753 22345689999986


Q ss_pred             ccc-----CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           67 SSS-----HELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        67 ~~~-----~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      ..-     ..+....+++.+.|.|+|||.++++...
T Consensus       159 ~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         159 SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             CC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            421     1222467899999999999999987644

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.17  E-value=0.047  Score=47.38  Aligned_cols=91  Identities=8%  Similarity=0.046  Sum_probs=60.5

Q ss_pred             cCceEEEeecCCccC-------------hHHHHHHHHHHHHHHh-----------hhcCCCeEEEEccCCCCCCCCCccc
Q 022411            6 MQSAVLALSEDKILP-------------VSAVLNAIRDLGDEAV-----------EQCDPQIITQASSLSQLPVESFSID   61 (297)
Q Consensus         6 ~~~~VLll~~~~~vt-------------~~dlse~m~~~A~~~~-----------~~~~~~v~~~~~d~~~Lp~~d~sfD   61 (297)
                      +..+||+|--|...+             ..++-+++++.|++-.           ...++++.++.+|+...--.+..||
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD  151 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  151 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence            345777776665443             2245567788777521           1136789999998864322457899


Q ss_pred             EEEeccccC-----CCChHHHHHHHHhcccCCcEEEEEec
Q 022411           62 TVLSISSSH-----ELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        62 ~Vls~~~~~-----~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      +|+.-....     .+....+++.+.+.|+|||.+++...
T Consensus       152 vIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         152 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            999754321     12247899999999999999987653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.94  E-value=0.013  Score=46.14  Aligned_cols=91  Identities=8%  Similarity=-0.035  Sum_probs=60.4

Q ss_pred             cCceEEEeecCCcc-------------ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CCCCCCcccEEEecccc
Q 022411            6 MQSAVLALSEDKIL-------------PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVESFSIDTVLSISSS   69 (297)
Q Consensus         6 ~~~~VLll~~~~~v-------------t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~   69 (297)
                      +|.+||-|..|+..             +..|....+++.++++++..  ..+++++.+|+.. ++.....||+|++...+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            46677777665543             23355567777777776544  3468999998865 45667899999997543


Q ss_pred             CCCChHHHHHHH--HhcccCCcEEEEEec
Q 022411           70 HELPGDQLLEEI--SRVLKPGGTILIYKK   96 (297)
Q Consensus        70 ~~~~~~~~L~ei--~RvLKPGG~l~i~~~   96 (297)
                      ..-.....+..+  .+.|+|+|.+++...
T Consensus        94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          94 AKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            322224455555  367999999987543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.91  E-value=0.045  Score=48.44  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=59.3

Q ss_pred             ceEEEeecCCcc--------------ChHHHHHHHHHHHHHHh------hhcCCCeEEEEccCCCC-CCCCCcccEEEec
Q 022411            8 SAVLALSEDKIL--------------PVSAVLNAIRDLGDEAV------EQCDPQIITQASSLSQL-PVESFSIDTVLSI   66 (297)
Q Consensus         8 ~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~------~~~~~~v~~~~~d~~~L-p~~d~sfD~Vls~   66 (297)
                      .+||+|--|...              +..++-+++++.+++..      ...++++..+.+|+... .-.+..||+|++-
T Consensus        79 k~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D  158 (312)
T d1uira_          79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIID  158 (312)
T ss_dssp             CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEE
T ss_pred             ceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEe
Confidence            467777654332              33356667788777643      12367899999988643 3345789999975


Q ss_pred             cc--cC------CCChHHHHHHHHhcccCCcEEEEEe
Q 022411           67 SS--SH------ELPGDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        67 ~~--~~------~~~~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      ..  ..      .+....+++.+.|.|+|||.++++.
T Consensus       159 ~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         159 LTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            42  11      1224689999999999999998765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.46  E-value=0.5  Score=40.52  Aligned_cols=74  Identities=14%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHh-----hhcCCCeEEEEccCCC-CCCCCCcccEEEeccccC-----CCChHHHHHHHHhcccCCcEE
Q 022411           23 AVLNAIRDLGDEAV-----EQCDPQIITQASSLSQ-LPVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGGTI   91 (297)
Q Consensus        23 dlse~m~~~A~~~~-----~~~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~-----~~~~~~~L~ei~RvLKPGG~l   91 (297)
                      ++-+++++.|++-.     ...++++..+.+|+.. +--....||+|+.-..-.     .+....+++.+.+.|+|||.+
T Consensus       106 EID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~  185 (274)
T d1iy9a_         106 DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIF  185 (274)
T ss_dssp             ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEE
T ss_pred             cCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceE
Confidence            44456666666532     1236889999998753 233467899999764311     122578999999999999999


Q ss_pred             EEEec
Q 022411           92 LIYKK   96 (297)
Q Consensus        92 ~i~~~   96 (297)
                      +.+..
T Consensus       186 v~q~~  190 (274)
T d1iy9a_         186 VAQTD  190 (274)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            97753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.05  E-value=0.83  Score=39.64  Aligned_cols=90  Identities=12%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             ceEEEeecCCccC--------------hHHHHHHHHHHHHHHh-----hhcCCCeEEEEccCCC-CCCCCCcccEEEecc
Q 022411            8 SAVLALSEDKILP--------------VSAVLNAIRDLGDEAV-----EQCDPQIITQASSLSQ-LPVESFSIDTVLSIS   67 (297)
Q Consensus         8 ~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~-----~~~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~   67 (297)
                      .+||++-.|...+              .-++-+++++.+++-.     ...++++..+.+|+.. +.-....||+|+.-.
T Consensus        91 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~  170 (295)
T d1inla_          91 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS  170 (295)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred             ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcC
Confidence            4677776554332              2345556777766522     1237889999998753 333456899999754


Q ss_pred             cc------CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411           68 SS------HELPGDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        68 ~~------~~~~~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      .-      ..+....+++.+.+.|+|||.+++....
T Consensus       171 ~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         171 TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             ----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            22      1223578999999999999999877543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=89.40  E-value=0.08  Score=42.31  Aligned_cols=91  Identities=11%  Similarity=0.024  Sum_probs=55.1

Q ss_pred             ccCceEEEeecCCcc------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCC----CCCCCCCcccEEEeccc
Q 022411            5 KMQSAVLALSEDKIL------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLS----QLPVESFSIDTVLSISS   68 (297)
Q Consensus         5 ~~~~~VLll~~~~~v------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~----~Lp~~d~sfD~Vls~~~   68 (297)
                      ..|.+||-+..|+..            +..|..+.+++.++++++.......+...+..    ........||+|++.-.
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP  119 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP  119 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence            346677777655533            23467778899998887665333334433332    22345678999999765


Q ss_pred             cCCCChHHHHHHH--HhcccCCcEEEEEec
Q 022411           69 SHELPGDQLLEEI--SRVLKPGGTILIYKK   96 (297)
Q Consensus        69 ~~~~~~~~~L~ei--~RvLKPGG~l~i~~~   96 (297)
                      ++. .....+.++  ...|+|||.+++...
T Consensus       120 Y~~-~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         120 YAM-DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             TTS-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             ccc-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            443 222334444  357999999887543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.054  Score=45.45  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-----CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           22 SAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        22 ~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-----~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      .+..++..+.|++..++.  ..++.++.+++.. ++     ...++||+|+.-..-..  -...+..+.+.|+|||.+++
T Consensus        90 ie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~--y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1          90 CEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKEN--CSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             EESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTT--HHHHHHHHHHHEEEEEEEEE
T ss_pred             EeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHHH--HHHHHHHHHHHhcCCcEEEE
Confidence            345567777887766543  4579999998643 22     23678999998753221  34678889999999999998


Q ss_pred             EecC
Q 022411           94 YKKL   97 (297)
Q Consensus        94 ~~~~   97 (297)
                      -+..
T Consensus       168 Dn~l  171 (219)
T d2avda1         168 LRVL  171 (219)
T ss_dssp             ECCS
T ss_pred             eCCc
Confidence            7653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=89.15  E-value=0.16  Score=44.81  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=61.0

Q ss_pred             cCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCC----CCCCCCcccEEEe
Q 022411            6 MQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQ----LPVESFSIDTVLS   65 (297)
Q Consensus         6 ~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~----Lp~~d~sfD~Vls   65 (297)
                      .|.+||-|..++.             |+..|++...++.++++++..   ..++.++.+|+..    +.-....||+|+.
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            4566776644322             334477788889988876432   3478999998842    2224568999998


Q ss_pred             cccc-----CCC-C----hHHHHHHHHhcccCCcEEEEEecC
Q 022411           66 ISSS-----HEL-P----GDQLLEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        66 ~~~~-----~~~-~----~~~~L~ei~RvLKPGG~l~i~~~~   97 (297)
                      -...     ... .    -..++....++|+|||.|++....
T Consensus       224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            6431     111 1    145788889999999999987654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.91  E-value=0.72  Score=38.76  Aligned_cols=100  Identities=11%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC------CCCCCcccEEEeccccCCCC------------------
Q 022411           20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL------PVESFSIDTVLSISSSHELP------------------   73 (297)
Q Consensus        20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L------p~~d~sfD~Vls~~~~~~~~------------------   73 (297)
                      ...|+++++++.|+++++..  ..++.++..+....      ...+..||+|+|+-.++...                  
T Consensus        89 ~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~  168 (250)
T d2h00a1          89 LATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSS  168 (250)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC---------------------
T ss_pred             cceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchh
Confidence            34588889999999987654  44577776544322      12356899999997544211                  


Q ss_pred             ------------------hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411           74 ------------------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI  126 (297)
Q Consensus        74 ------------------~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~  126 (297)
                                        -...+.+..+.++..|.+........       ....+...|...||.++...
T Consensus       169 ~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~-------~l~~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         169 VNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKC-------SLAPLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             ----CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTT-------SHHHHHHHHHHTTCSEEEEE
T ss_pred             hcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchh-------hHHHHHHHHHHcCCCeEEEE
Confidence                              01234555667888888765443221       12256778888998876543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.59  E-value=0.44  Score=41.90  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             ceEEEeecCCccC--------------hHHHHHHHHHHHHHHhh-----hcCCCeEEEEccCCCC-CCCCCcccEEEecc
Q 022411            8 SAVLALSEDKILP--------------VSAVLNAIRDLGDEAVE-----QCDPQIITQASSLSQL-PVESFSIDTVLSIS   67 (297)
Q Consensus         8 ~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~-----~~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~   67 (297)
                      .+||+|-.|...+              .-++-+++++.+++-..     ..++++..+.+|+... .-....||+|+.-.
T Consensus       108 k~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~  187 (312)
T d2b2ca1         108 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDS  187 (312)
T ss_dssp             CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECC
T ss_pred             CeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcC
Confidence            4677776554433              23444567777765321     2368899998887532 33467899999864


Q ss_pred             cc-----CCCChHHHHHHHHhcccCCcEEEEEec
Q 022411           68 SS-----HELPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        68 ~~-----~~~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                      .-     .++....+++.+.|.|+|||.++.+..
T Consensus       188 ~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         188 SDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             C-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            31     122247889999999999999998753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.67  E-value=0.34  Score=39.64  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=40.3

Q ss_pred             CCCCcccEEEeccccC--------------CCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC
Q 022411           55 VESFSIDTVLSISSSH--------------ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG  119 (297)
Q Consensus        55 ~~d~sfD~Vls~~~~~--------------~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG  119 (297)
                      ++++|+|+|+..-.+.              ++. ....+.+++|+|+|||.+++....        .....+...+...|
T Consensus        19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~--------~~~~~~~~~~~~~g   90 (256)
T d1g60a_          19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--------FNCAFICQYLVSKG   90 (256)
T ss_dssp             SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--------HHHHHHHHHHHHTT
T ss_pred             CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc--------hhhhhhhhhhhccc
Confidence            4588888888764321              011 245788999999999999865421        12224556678889


Q ss_pred             ccccc
Q 022411          120 FLDAQ  124 (297)
Q Consensus       120 Fv~v~  124 (297)
                      |.-..
T Consensus        91 ~~~~~   95 (256)
T d1g60a_          91 MIFQN   95 (256)
T ss_dssp             CEEEE
T ss_pred             ceeee
Confidence            87543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=87.27  E-value=0.48  Score=40.92  Aligned_cols=95  Identities=14%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-------------------hHHHHHHHHh
Q 022411           23 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-------------------GDQLLEEISR   83 (297)
Q Consensus        23 dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-------------------~~~~L~ei~R   83 (297)
                      |+.+.+.+.|+.+.........+..++.... .....||+|+++..+....                   ...++....+
T Consensus       153 di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~  231 (328)
T d2f8la1         153 DVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMR  231 (328)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHH
Confidence            4556677777766544455666776665433 3457899999996542111                   1236889999


Q ss_pred             cccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           84 VLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        84 vLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      .|+|||++.+..+..--.+.   ....+++.+...+.+
T Consensus       232 ~Lk~~G~~~~I~p~~~l~~~---~~~~lR~~L~~~~~i  266 (328)
T d2f8la1         232 YTKPGGYLFFLVPDAMFGTS---DFAKVDKFIKKNGHI  266 (328)
T ss_dssp             TEEEEEEEEEEEEGGGGGST---THHHHHHHHHHHEEE
T ss_pred             hcCCCCceEEEecCccccCc---hhHHHHHHHHhCCcE
Confidence            99999999877664211111   122466666655544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.83  E-value=0.11  Score=45.86  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=55.9

Q ss_pred             CCccChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCCC----CCCCCcccEEEecccc--------CC-CC--hHHH
Q 022411           16 DKILPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQL----PVESFSIDTVLSISSS--------HE-LP--GDQL   77 (297)
Q Consensus        16 ~~~vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~L----p~~d~sfD~Vls~~~~--------~~-~~--~~~~   77 (297)
                      ++.|+..|.+..+++.|+++++..   ..++.++++|+...    ......||+|+..-..        .+ +.  ...+
T Consensus       154 GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l  233 (309)
T d2igta1         154 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLM  233 (309)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHH
T ss_pred             CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHH
Confidence            446667789999999999886532   33689999988533    2235789999985321        11 11  2456


Q ss_pred             HHHHHhcccCCcEEEEEecC
Q 022411           78 LEEISRVLKPGGTILIYKKL   97 (297)
Q Consensus        78 L~ei~RvLKPGG~l~i~~~~   97 (297)
                      +..+.++|+|||.+++....
T Consensus       234 ~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         234 LDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             HHHHHHTBCTTCCEEEEEEC
T ss_pred             HHHHHHhcCCCCCEEEEecC
Confidence            66788899999987766543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=85.08  E-value=0.59  Score=40.13  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CCCCCCcccEEEecccc-----------CCCCh---------
Q 022411           18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LPVESFSIDTVLSISSS-----------HELPG---------   74 (297)
Q Consensus        18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~-----------~~~~~---------   74 (297)
                      .++..|+++..++.|+++++..  ..++.+..+++.. ++...+.||+|+++-.+           .|-|.         
T Consensus       135 ~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dG  214 (271)
T d1nv8a_         135 IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDG  214 (271)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTS
T ss_pred             eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccch
Confidence            3445688899999999988664  3456777877754 33334789999998531           01110         


Q ss_pred             HHHHHH-HHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411           75 DQLLEE-ISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        75 ~~~L~e-i~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv  121 (297)
                      -.++.+ +.+.|+|||.+++-. +..+    .   +.+...+...||.
T Consensus       215 l~~~r~i~~~~L~~~G~l~~Ei-g~~Q----~---~~v~~l~~~~g~~  254 (271)
T d1nv8a_         215 LDFYREFFGRYDTSGKIVLMEI-GEDQ----V---EELKKIVSDTVFL  254 (271)
T ss_dssp             CHHHHHHHHHCCCTTCEEEEEC-CTTC----H---HHHTTTSTTCEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEE-CHHH----H---HHHHHHHHhCCEE
Confidence            022222 567899999887654 3211    1   1344455566764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.86  E-value=0.13  Score=43.26  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC------CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411           23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP------VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI   93 (297)
Q Consensus        23 dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp------~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i   93 (297)
                      +..++..+.|++..++.  ..+|.++.+++.. |+      ...++||+|+.-..-..  -...+..+.+.|+|||.+++
T Consensus        91 e~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~--y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1          91 DINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN--YLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             ESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTT--HHHHHHHHHHHBCTTCCEEE
T ss_pred             eccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhh--hHHHHHHHHhhcCCCcEEEE
Confidence            44456667777766543  4469999998753 22      13568999999753221  34678889999999999998


Q ss_pred             Eec
Q 022411           94 YKK   96 (297)
Q Consensus        94 ~~~   96 (297)
                      -+.
T Consensus       169 DNv  171 (227)
T d1susa1         169 DNT  171 (227)
T ss_dssp             ETT
T ss_pred             ccC
Confidence            754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.24  E-value=0.27  Score=40.89  Aligned_cols=70  Identities=21%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             CCCCcccEEEeccccC-----------CCC-hHHHHHHHHhcccCCcEEEEEecCCCCcc-chHHHHHHHHHHHHHCCcc
Q 022411           55 VESFSIDTVLSISSSH-----------ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKG-DVDKAISALEGKLLLAGFL  121 (297)
Q Consensus        55 ~~d~sfD~Vls~~~~~-----------~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g-~~~~~~~~l~~~L~laGFv  121 (297)
                      ++++|+|+|+..-.+.           +.. ....+.+++|+|||+|.+++......... ........+...+...||.
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML   98 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence            5689999999864321           112 36778999999999999998754321110 0111122344556778887


Q ss_pred             ccc
Q 022411          122 DAQ  124 (297)
Q Consensus       122 ~v~  124 (297)
                      -..
T Consensus        99 ~~~  101 (279)
T d1eg2a_          99 LAN  101 (279)
T ss_dssp             EEE
T ss_pred             eee
Confidence            543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=83.92  E-value=0.38  Score=38.46  Aligned_cols=76  Identities=8%  Similarity=-0.034  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHh--cccCCcEEEEEec
Q 022411           21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILIYKK   96 (297)
Q Consensus        21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~R--vLKPGG~l~i~~~   96 (297)
                      ..|.....++.++++++.. ..++.++.+|+.. +......||+|++.-.+..-.....+..+.+  +|+++|.+++...
T Consensus        71 ~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1          71 LIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            3355567777777776554 4568888887753 3445678999999876554334566666654  6999999987543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.91  E-value=1.1  Score=36.11  Aligned_cols=92  Identities=11%  Similarity=0.054  Sum_probs=57.1

Q ss_pred             cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411           19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK   95 (297)
Q Consensus        19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~   95 (297)
                      |+..|+.+.+++.+++++.....+..+..++...+   ...||+|+++-.+....   ....+   .+.+.+++.++...
T Consensus        72 v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~~~~~d~~~l---~~~~~~~~~v~~ih  145 (201)
T d1wy7a1          72 VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQRKHADRPFL---LKAFEISDVVYSIH  145 (201)
T ss_dssp             EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSSSTTTTHHHH---HHHHHHCSEEEEEE
T ss_pred             EEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccccccccHHHH---HHHHhhcccchhcc
Confidence            44557788999999988777777889999998876   46799999987654432   22333   33445556555432


Q ss_pred             cCCCCccchHHHHHHHHHHHHHCCccc
Q 022411           96 KLTSDKGDVDKAISALEGKLLLAGFLD  122 (297)
Q Consensus        96 ~~~~~~g~~~~~~~~l~~~L~laGFv~  122 (297)
                      ...      .....-+.......|+..
T Consensus       146 ~~~------~~~~~~i~~~~~~~g~~i  166 (201)
T d1wy7a1         146 LAK------PEVRRFIEKFSWEHGFVV  166 (201)
T ss_dssp             ECC------HHHHHHHHHHHHHTTEEE
T ss_pred             cch------HHHHHHHHHHHhhcCceE
Confidence            221      111123444556677753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=83.57  E-value=1.8  Score=35.41  Aligned_cols=86  Identities=13%  Similarity=0.094  Sum_probs=57.3

Q ss_pred             CceEEEeecCCccChH--------------HHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411            7 QSAVLALSEDKILPVS--------------AVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE   71 (297)
Q Consensus         7 ~~~VLll~~~~~vt~~--------------dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~   71 (297)
                      +.++|-+-+|+..+..              |.+..-....++-+... ..++.++.+.++.+. .+.+||+|++....  
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA--  142 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc--
Confidence            4578888777777711              11111222222222333 458999999999875 45689999987632  


Q ss_pred             CChHHHHHHHHhcccCCcEEEEEec
Q 022411           72 LPGDQLLEEISRVLKPGGTILIYKK   96 (297)
Q Consensus        72 ~~~~~~L~ei~RvLKPGG~l~i~~~   96 (297)
                       +...++.-..+.++++|++++.-.
T Consensus       143 -~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         143 -SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             -SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEECC
Confidence             256788889999999999998764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=80.41  E-value=2.4  Score=35.43  Aligned_cols=111  Identities=11%  Similarity=0.034  Sum_probs=69.8

Q ss_pred             cCceEEEeecCCccChH--H---------HHHHHHHHHH---HHhhhc-CCCeEEEEccCCCCCCC---CCcccEEEecc
Q 022411            6 MQSAVLALSEDKILPVS--A---------VLNAIRDLGD---EAVEQC-DPQIITQASSLSQLPVE---SFSIDTVLSIS   67 (297)
Q Consensus         6 ~~~~VLll~~~~~vt~~--d---------lse~m~~~A~---~~~~~~-~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~   67 (297)
                      .+.+++-+-+|+..+..  .         +++.....+.   +-+... ..++..+.+.++.+...   ...||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            34578888888887721  1         1222222221   112232 46888888888766432   35799999986


Q ss_pred             ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411           68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ  124 (297)
Q Consensus        68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~  124 (297)
                      ..   +...++.-..+.|++||++++.-...     ...-.++..+.+...||.-..
T Consensus       150 va---~l~~ll~~~~~~l~~~g~~i~~KG~~-----~~~El~~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         150 VA---RLSVLSELCLPLVKKNGLFVALKAAS-----AEEELNAGKKAITTLGGELEN  198 (239)
T ss_dssp             CS---CHHHHHHHHGGGEEEEEEEEEEECC------CHHHHHHHHHHHHHTTEEEEE
T ss_pred             hh---CHHHHHHHHhhhcccCCEEEEECCCC-----hHHHHHHHHHHHHHcCCEEEE
Confidence            32   35678999999999999999876432     223334556677888886433