Citrus Sinensis ID: 022416

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MSAMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
cccccccccHHHHHHHHcccccHHHHHcccccccccccHHHHcccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHcccEEEEcEEcccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccEEEEEEEcccccccc
cHHHHHHHHHHHHHHHcHccccHHHHHHcccccEcccccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHcccccccccccccccEEEEEccccccccHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHccccccccHHHHHHHHccccHHEEEEEEEcccHHHHHHHHHcccEEEEHcHccccccHHHHHHccccHHHHHHHHHHHHccccEEEEEcEEEEEEccccccHHccc
msamigkrgVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAvastsllgvplghnssflqgpafapprireaiwcgstnstteegkelndprvltdvgdvpvqeirdcgvdddrlMNVITESVKLvmeedplhplvlggdhsisfPVIRAVSeklggpvdvlhldahpdiydafegnkyshasSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
msamigkrGVHYLQKLKSANIpiaviekgqnrvIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGStnstteegkelndprvltdvgdvpvqeirdcgvdddrlMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSitkegreqgkrfgveqyemrtfsrdrQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
MSAMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFlenlvslslllKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
*******RGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGS**************RVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEG***GKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTT***
***********************************ASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
MSAMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNS********NDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
*SAMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
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MSAMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQTTAFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
P46637342 Arginase OS=Arabidopsis t yes no 0.851 0.739 0.863 1e-129
Q9ZPF5344 Probable arginase OS=Arab no no 0.838 0.723 0.815 1e-121
O49046350 Arginase OS=Glycine max G no no 0.838 0.711 0.734 1e-110
P19268285 Uncharacterized 32.2 kDa yes no 0.555 0.578 0.337 6e-16
Q9KBE3319 Formimidoylglutamase OS=B yes no 0.693 0.645 0.310 7e-15
Q90XD2340 Agmatinase, mitochondrial yes no 0.484 0.423 0.357 9e-15
Q9BSE5352 Agmatinase, mitochondrial yes no 0.535 0.451 0.331 2e-14
Q814Q2290 Agmatinase OS=Bacillus ce yes no 0.609 0.624 0.284 2e-14
Q81JT1290 Agmatinase OS=Bacillus an no no 0.609 0.624 0.278 2e-13
Q0D2L3353 Agmatinase, mitochondrial yes no 0.515 0.433 0.310 3e-12
>sp|P46637|ARGI1_ARATH Arginase OS=Arabidopsis thaliana GN=At4g08900 PE=2 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/256 (86%), Positives = 238/256 (92%), Gaps = 3/256 (1%)

Query: 1   MSAMIGKRGVHYLQKLKSAN---IPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGG 57
           MS +IG++G++Y+ +L SA+   +  + IEKGQNRVIDASLTLIRERAKLKGELVR LGG
Sbjct: 1   MSRIIGRKGINYIHRLNSASFTSVSASSIEKGQNRVIDASLTLIRERAKLKGELVRLLGG 60

Query: 58  AVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDV 117
           A ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNS TEEGKEL DPRVLTDVGDV
Sbjct: 61  AKASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSATEEGKELKDPRVLTDVGDV 120

Query: 118 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 177
           PVQEIRDCGVDDDRLMNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+RAVSEKLGGPVD
Sbjct: 121 PVQEIRDCGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVD 180

Query: 178 VLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQ 237
           +LHLDAHPDIYD FEGNKYSHASSFARIMEGGYARRLLQVGIRSI +EGREQGKRFGVEQ
Sbjct: 181 ILHLDAHPDIYDCFEGNKYSHASSFARIMEGGYARRLLQVGIRSINQEGREQGKRFGVEQ 240

Query: 238 YEMRTFSRDRQFLENL 253
           YEMRTFS+DR  LENL
Sbjct: 241 YEMRTFSKDRPMLENL 256

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 3EC: .EC: 1
>sp|Q9ZPF5|ARGI2_ARATH Probable arginase OS=Arabidopsis thaliana GN=At4g08870 PE=1 SV=1 Back     alignment and function description
>sp|O49046|ARGI_SOYBN Arginase OS=Glycine max GN=AG1 PE=2 SV=1 Back     alignment and function description
>sp|P19268|YHMF_METFE Uncharacterized 32.2 kDa protein in hmfB 3'region OS=Methanothermus fervidus PE=3 SV=1 Back     alignment and function description
>sp|Q9KBE3|HUTG_BACHD Formimidoylglutamase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=hutG PE=3 SV=1 Back     alignment and function description
>sp|Q90XD2|SPEB_CHICK Agmatinase, mitochondrial OS=Gallus gallus GN=AGMAT PE=2 SV=1 Back     alignment and function description
>sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2 Back     alignment and function description
>sp|Q814Q2|SPEB_BACCR Agmatinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speB PE=3 SV=1 Back     alignment and function description
>sp|Q81JT1|SPEB_BACAN Agmatinase OS=Bacillus anthracis GN=speB PE=3 SV=1 Back     alignment and function description
>sp|Q0D2L3|SPEB_RAT Agmatinase, mitochondrial OS=Rattus norvegicus GN=Agmat PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
255541244338 arginase, putative [Ricinus communis] gi 0.841 0.739 0.928 1e-135
118489295338 unknown [Populus trichocarpa x Populus d 0.845 0.742 0.920 1e-134
224063758338 predicted protein [Populus trichocarpa] 0.845 0.742 0.916 1e-133
224127346333 predicted protein [Populus trichocarpa] 0.828 0.738 0.918 1e-131
148828535338 arginase [Malus hupehensis] 0.845 0.742 0.892 1e-131
296089193371 unnamed protein product [Vitis vinifera] 0.838 0.671 0.883 1e-130
359489447330 PREDICTED: arginase-like [Vitis vinifera 0.838 0.754 0.883 1e-129
350538013338 arginase 1 [Solanum lycopersicum] gi|546 0.835 0.733 0.879 1e-129
297813247342 arginase [Arabidopsis lyrata subsp. lyra 0.851 0.739 0.867 1e-127
15236640342 arginase [Arabidopsis thaliana] gi|11684 0.851 0.739 0.863 1e-127
>gi|255541244|ref|XP_002511686.1| arginase, putative [Ricinus communis] gi|223548866|gb|EEF50355.1| arginase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/250 (92%), Positives = 244/250 (97%)

Query: 4   MIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTS 63
           +IG+RG+HYLQKLK+ANIP  +IEKGQNRVIDASLTLIRERAKLKGELVRALGGA AS+S
Sbjct: 3   VIGRRGIHYLQKLKAANIPAELIEKGQNRVIDASLTLIRERAKLKGELVRALGGAKASSS 62

Query: 64  LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
           LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR
Sbjct: 63  LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 122

Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
           DC VDDDRLMNVI+ESVKLVMEEDPL PLVLGGDHSISFPV+RAVSEKLGGPVD+LHLDA
Sbjct: 123 DCSVDDDRLMNVISESVKLVMEEDPLRPLVLGGDHSISFPVVRAVSEKLGGPVDILHLDA 182

Query: 184 HPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTF 243
           HPDIY AFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGK++GVEQ+EMRTF
Sbjct: 183 HPDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKKYGVEQFEMRTF 242

Query: 244 SRDRQFLENL 253
           SRDRQFLENL
Sbjct: 243 SRDRQFLENL 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118489295|gb|ABK96452.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224063758|ref|XP_002301277.1| predicted protein [Populus trichocarpa] gi|222843003|gb|EEE80550.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127346|ref|XP_002320051.1| predicted protein [Populus trichocarpa] gi|222860824|gb|EEE98366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|148828535|gb|ABR13881.1| arginase [Malus hupehensis] Back     alignment and taxonomy information
>gi|296089193|emb|CBI38896.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489447|ref|XP_002280690.2| PREDICTED: arginase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538013|ref|NP_001234578.1| arginase 1 [Solanum lycopersicum] gi|54648780|gb|AAV36808.1| arginase 1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|297813247|ref|XP_002874507.1| arginase [Arabidopsis lyrata subsp. lyrata] gi|297320344|gb|EFH50766.1| arginase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15236640|ref|NP_192629.1| arginase [Arabidopsis thaliana] gi|1168493|sp|P46637.1|ARGI1_ARATH RecName: Full=Arginase gi|602422|gb|AAA85816.1| arginase [Arabidopsis thaliana] gi|4325373|gb|AAD17369.1| Arabidopsis thaliana arginase (SW:P46637) (Pfam: PF00491, Score=419.6, E=3.7e-142 N=1) [Arabidopsis thaliana] gi|7267532|emb|CAB78014.1| arginase [Arabidopsis thaliana] gi|15450351|gb|AAK96469.1| AT4g08900/T3H13_7 [Arabidopsis thaliana] gi|16974475|gb|AAL31241.1| AT4g08900/T3H13_7 [Arabidopsis thaliana] gi|332657294|gb|AEE82694.1| arginase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
TAIR|locus:2138718342 ARGAH1 "arginine amidohydrolas 0.831 0.722 0.868 5.8e-114
TAIR|locus:2138743344 ARGAH2 "arginine amidohydrolas 0.821 0.709 0.816 1.3e-107
TIGR_CMR|BA_3709323 BA_3709 "formiminoglutamase" [ 0.693 0.637 0.327 2.2e-18
TIGR_CMR|SPO_2464315 SPO_2464 "agmatinase" [Ruegeri 0.528 0.498 0.315 1.2e-17
UNIPROTKB|Q90XD2340 AGMAT "Agmatinase, mitochondri 0.501 0.438 0.366 1.3e-17
UNIPROTKB|F1SUU6361 AGMAT "Uncharacterized protein 0.542 0.445 0.351 3.3e-17
UNIPROTKB|Q9BSE5352 AGMAT "Agmatinase, mitochondri 0.501 0.423 0.347 3.7e-17
TIGR_CMR|CHY_1620287 CHY_1620 "putative agmatinase" 0.538 0.557 0.331 8.6e-17
UNIPROTKB|E1BLC0361 AGMAT "Uncharacterized protein 0.501 0.412 0.366 1.6e-15
TIGR_CMR|BA_5617290 BA_5617 "agmatinase, putative" 0.562 0.575 0.289 2.5e-15
TAIR|locus:2138718 ARGAH1 "arginine amidohydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 217/250 (86%), Positives = 234/250 (93%)

Query:     1 MSAMIGKRGVHYLQKLKSAN---IPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGG 57
             MS +IG++G++Y+ +L SA+   +  + IEKGQNRVIDASLTLIRERAKLKGELVR LGG
Sbjct:     1 MSRIIGRKGINYIHRLNSASFTSVSASSIEKGQNRVIDASLTLIRERAKLKGELVRLLGG 60

Query:    58 AVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDV 117
             A ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNS TEEGKEL DPRVLTDVGDV
Sbjct:    61 AKASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSATEEGKELKDPRVLTDVGDV 120

Query:   118 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 177
             PVQEIRDCGVDDDRLMNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+RAVSEKLGGPVD
Sbjct:   121 PVQEIRDCGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVD 180

Query:   178 VLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQ 237
             +LHLDAHPDIYD FEGNKYSHASSFARIMEGGYARRLLQVGIRSI +EGREQGKRFGVEQ
Sbjct:   181 ILHLDAHPDIYDCFEGNKYSHASSFARIMEGGYARRLLQVGIRSINQEGREQGKRFGVEQ 240

Query:   238 YEMRTFSRDR 247
             YEMRTFS+DR
Sbjct:   241 YEMRTFSKDR 250
GO:0005739 "mitochondrion" evidence=ISM
GO:0006595 "polyamine metabolic process" evidence=ISS
GO:0008783 "agmatinase activity" evidence=ISS
GO:0016813 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0004053 "arginase activity" evidence=IGI;IMP
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0006527 "arginine catabolic process" evidence=IGI
TAIR|locus:2138743 ARGAH2 "arginine amidohydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3709 BA_3709 "formiminoglutamase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2464 SPO_2464 "agmatinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q90XD2 AGMAT "Agmatinase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUU6 AGMAT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSE5 AGMAT "Agmatinase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1620 CHY_1620 "putative agmatinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|E1BLC0 AGMAT "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5617 BA_5617 "agmatinase, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46637ARGI1_ARATH3, ., 5, ., 3, ., 10.86320.85180.7397yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.3.10.991
3rd Layer3.5.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
PLN02615338 PLN02615, PLN02615, arginase 0.0
cd11593263 cd11593, Agmatinase-like_2, Agmatinase and related 2e-61
cd09990275 cd09990, Agmatinase-like, Agmatinase-like family 2e-48
pfam00491268 pfam00491, Arginase, Arginase family 3e-47
COG0010305 COG0010, SpeB, Arginase/agmatinase/formimionogluta 2e-29
cd11589274 cd11589, Agmatinase_like_1, Agmatinase and related 7e-29
cd11592289 cd11592, Agmatinase_PAH, Agmatinase-like family in 2e-25
TIGR01230275 TIGR01230, agmatinase, agmatinase 2e-23
cd09015270 cd09015, Ureohydrolase, Ureohydrolase superfamily 6e-16
PRK01722320 PRK01722, PRK01722, formimidoylglutamase; Provisio 3e-14
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 3e-12
PRK02190301 PRK02190, PRK02190, agmatinase; Provisional 2e-11
cd09999272 cd09999, Arginase-like_1, Arginase-like amidino hy 7e-09
cd09989290 cd09989, Arginase, Arginase family 3e-08
TIGR01227307 TIGR01227, hutG, formimidoylglutamase 6e-08
TIGR01229300 TIGR01229, rocF_arginase, arginase 4e-05
cd09988262 cd09988, Formimidoylglutamase, Formimidoylglutamas 1e-04
cd11587294 cd11587, Arginase-like, Arginase types I and II an 0.001
PRK13773324 PRK13773, PRK13773, formimidoylglutamase; Provisio 0.002
>gnl|CDD|178224 PLN02615, PLN02615, arginase Back     alignment and domain information 
 Score =  513 bits (1322), Expect = 0.0
 Identities = 225/249 (90%), Positives = 242/249 (97%)

Query: 5   IGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSL 64
           IG+RG+HYLQ+L +A++P +++EKGQNRVIDASLTLIRERAKLKGELVRALGGA AS+ L
Sbjct: 4   IGRRGIHYLQRLIAASVPASLLEKGQNRVIDASLTLIRERAKLKGELVRALGGAKASSCL 63

Query: 65  LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD 124
           LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD
Sbjct: 64  LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD 123

Query: 125 CGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAH 184
           CGVDDDRLMNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+RAVSEKLGGPVD+LHLDAH
Sbjct: 124 CGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVDILHLDAH 183

Query: 185 PDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS 244
           PDIY AFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS
Sbjct: 184 PDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS 243

Query: 245 RDRQFLENL 253
           +DR+ LENL
Sbjct: 244 KDREKLENL 252

Length = 338
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins Back     alignment and domain information
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family Back     alignment and domain information
>gnl|CDD|215946 pfam00491, Arginase, Arginase family Back     alignment and domain information
>gnl|CDD|223089 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|212537 cd11589, Agmatinase_like_1, Agmatinase and related proteins Back     alignment and domain information
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase Back     alignment and domain information
>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase Back     alignment and domain information
>gnl|CDD|212511 cd09015, Ureohydrolase, Ureohydrolase superfamily includes arginase, formiminoglutamase, agmatinase and proclavaminate amidinohydrolase (PAH) Back     alignment and domain information
>gnl|CDD|234974 PRK01722, PRK01722, formimidoylglutamase; Provisional Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|235011 PRK02190, PRK02190, agmatinase; Provisional Back     alignment and domain information
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family Back     alignment and domain information
>gnl|CDD|212515 cd09989, Arginase, Arginase family Back     alignment and domain information
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase Back     alignment and domain information
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase Back     alignment and domain information
>gnl|CDD|212514 cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE Back     alignment and domain information
>gnl|CDD|212536 cd11587, Arginase-like, Arginase types I and II and arginase-like family Back     alignment and domain information
>gnl|CDD|237499 PRK13773, PRK13773, formimidoylglutamase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
PLN02615338 arginase 100.0
KOG2964361 consensus Arginase family protein [Amino acid tran 100.0
COG0010305 SpeB Arginase/agmatinase/formimionoglutamate hydro 100.0
PRK13775328 formimidoylglutamase; Provisional 100.0
TIGR01230275 agmatinase agmatinase. Note: a history of early mi 100.0
TIGR01227307 hutG formimidoylglutamase. Formiminoglutamase, the 100.0
PRK13772314 formimidoylglutamase; Provisional 100.0
PRK13774311 formimidoylglutamase; Provisional 100.0
PRK02190301 agmatinase; Provisional 100.0
PRK01722320 formimidoylglutamase; Provisional 100.0
PRK13776318 formimidoylglutamase; Provisional 100.0
PRK13773324 formimidoylglutamase; Provisional 100.0
PF00491277 Arginase: Arginase family; InterPro: IPR006035 The 100.0
TIGR01229300 rocF_arginase arginase. This model helps resolve a 100.0
KOG2965318 consensus Arginase [Amino acid transport and metab 99.97
PF12640162 UPF0489: UPF0489 domain; InterPro: IPR024131 This 94.55
>PLN02615 arginase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-54  Score=411.55  Aligned_cols=263  Identities=85%  Similarity=1.299  Sum_probs=227.0

Q ss_pred             ccccccccchhhhhcccCCChHHHhhccccccccchhhhhhhhhhhhHHHhhhcCCcCcEEEEEeecCCCCCCCCCccch
Q 022416            3 AMIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFA   82 (297)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~~~~~~~~~~~~~~l~~~~~~i~llGvP~D~g~s~r~Ga~~G   82 (297)
                      .++|+||+|||||+++++++.+.++..+++.|++..||+++|..||.+++++.++.+++++|+|+|||.+++||+|+|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ilGvP~D~~~s~r~G~r~g   81 (338)
T PLN02615          2 VAIGRRGIHYLQRLIAASVPASLLEKGQNRVIDASLTLIRERAKLKGELVRALGGAKASSCLLGVPLGHNSSFLQGPAFA   81 (338)
T ss_pred             chHHHHHHHHHHHHHHHhccHHHhhcCCCcccccchhhccCcccccccccCCcccCCCCEEEEeCCCCCCCCCCCchhhh
Confidence            36899999999999999999999999999999999999999988999988887766779999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeCCCCcchH
Q 022416           83 PPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISF  162 (297)
Q Consensus        83 P~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~l~~~v~~vl~~g~~~pIvLGGDHsit~  162 (297)
                      |++||++++...++...+.+.++.+...++|+||+++.+.+..+.+.+++++++++.++.++++++.+||+||||||+||
T Consensus        82 P~aIR~as~~~~~~~~~~~~~~~~~~~~i~D~GDv~v~~~~~~g~~~~~~~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~  161 (338)
T PLN02615         82 PPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISY  161 (338)
T ss_pred             HHHHHHHHhcCccCCccccCCChhhcCeeEecCCCcCCcccccccCHHHHHHHHHHHHHHHHhcCCCceEEECcchHhhH
Confidence            99999999755444434446666555448999999986532222267999999999999999864358999999999999


Q ss_pred             HhHHHHHHHcCCCeEEEEEecCCCCCCCCCCCccCCchHHHHHHcCCCCCcEEEEeeCCCCHHHHHHHHHcCCeEEEccc
Q 022416          163 PVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRT  242 (297)
Q Consensus       163 ~~i~al~~~~~~~i~VI~fDAH~Dl~~~~~G~~~shGt~~~~~~e~g~~~~iv~iGiR~~~~~e~~~~~~~gv~~~~~~d  242 (297)
                      |.++|+.++++++++|||||||+|+++++.|+.++|||||++++|.+..++++|||+|+++++|+++++++|+.++++++
T Consensus       162 ~~iral~~~~~~~v~vI~fDAH~Dl~~~~~g~~~shgs~~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~  241 (338)
T PLN02615        162 PVVRAVSEKLGGPVDILHLDAHPDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRT  241 (338)
T ss_pred             HHHHHHHHHhCCCeEEEEEecCcCCCCCCCCCCcCchhHHHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeH
Confidence            99999998886689999999999999999999999999999999987778999999999999999999999999999988


Q ss_pred             ccccc----cc----cccceEEEEecchhcc
Q 022416          243 FSRDR----QF----LENLVSLSLLLKYIHI  265 (297)
Q Consensus       243 i~~~~----~~----~~~~v~is~D~d~~~~  265 (297)
                      +.+..    .+    ..+++|||+|+|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDp  272 (338)
T PLN02615        242 FSKDREKLENLKLGEGVKGVYISIDVDCLDP  272 (338)
T ss_pred             hhhHHHHHHHHHhccCCCeEEEEEeeCccCH
Confidence            86421    11    2256888888888875

>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13775 formimidoylglutamase; Provisional Back     alignment and domain information
>TIGR01230 agmatinase agmatinase Back     alignment and domain information
>TIGR01227 hutG formimidoylglutamase Back     alignment and domain information
>PRK13772 formimidoylglutamase; Provisional Back     alignment and domain information
>PRK13774 formimidoylglutamase; Provisional Back     alignment and domain information
>PRK02190 agmatinase; Provisional Back     alignment and domain information
>PRK01722 formimidoylglutamase; Provisional Back     alignment and domain information
>PRK13776 formimidoylglutamase; Provisional Back     alignment and domain information
>PRK13773 formimidoylglutamase; Provisional Back     alignment and domain information
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3 Back     alignment and domain information
>TIGR01229 rocF_arginase arginase Back     alignment and domain information
>KOG2965 consensus Arginase [Amino acid transport and metabolism] Back     alignment and domain information
>PF12640 UPF0489: UPF0489 domain; InterPro: IPR024131 This entry describes a family of uncharacterised proteins found in metazoa Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
3nio_A319 Crystal Structure Of Pseudomonas Aeruginosa Guanidi 6e-13
3lhl_A287 Crystal Structure Of A Putative Agmatinase From Clo 5e-11
3m1r_A322 The Crystal Structure Of Formimidoylglutamase From 3e-10
4dz4_A324 X-Ray Crystal Structure Of A Hypothetical Agmatinas 3e-10
1wog_A305 Crystal Structure Of Agmatinase Reveals Structural 4e-10
3pzl_A313 The Crystal Structure Of Agmatine Ureohydrolase Of 5e-10
3nip_A326 Crystal Structure Of Pseudomonas Aeruginosa Guanidi 5e-08
1gq6_A313 Proclavaminate Amidino Hydrolase From Streptomyces 7e-08
>pdb|3NIO|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Guanidinobutyrase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 24/168 (14%)
Query: 63  SLLGVPLGHNSSFLQGPAFAPPRIR-EAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQE 121
           + +GVPL   +S   G  F P  IR E++     N  T  G    D   + D+GDV +  
Sbjct: 41  AFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMAT--GAAPFDSLNVADIGDVAINT 98
Query: 122 IRDCGVDDDRLMNVITESVKLVMEE------DPLHPLVLGGDHSISFPVIRAVSEKLGGP 175
                         + E+V+++ +E        + PL LGGDH+I+ P++RA+  K  G 
Sbjct: 99  FN------------LLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIX-KXHGX 145
Query: 176 VDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS 221
           V ++H+DAH D+ D   G   +H ++F R +E       R++Q+G+R+
Sbjct: 146 VGLVHVDAHADVNDHMFGEXIAHGTTFRRAVEEDLLDCDRVVQIGLRA 193
>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From Clostridium Difficile Length = 287 Back     alignment and structure
>pdb|3M1R|A Chain A, The Crystal Structure Of Formimidoylglutamase From Bacillus Subtilis Subsp. Subtilis Str. 168 Length = 322 Back     alignment and structure
>pdb|4DZ4|A Chain A, X-Ray Crystal Structure Of A Hypothetical Agmatinase From Burkholderia Thailandensis Length = 324 Back     alignment and structure
>pdb|1WOG|A Chain A, Crystal Structure Of Agmatinase Reveals Structural Conservation And Inhibition Mechanism Of The Ureohydrolase Superfamily Length = 305 Back     alignment and structure
>pdb|3PZL|A Chain A, The Crystal Structure Of Agmatine Ureohydrolase Of Thermoplasma Volcanium Length = 313 Back     alignment and structure
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Guanidinopropionase Complexed With 1,6-Diaminohexane Length = 326 Back     alignment and structure
>pdb|1GQ6|A Chain A, Proclavaminate Amidino Hydrolase From Streptomyces Clavuligerus Length = 313 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
3pzl_A313 Agmatine ureohydrolase; structural genomics, PSI-2 1e-38
3lhl_A287 Putative agmatinase; protein structure initiative 4e-35
2a0m_A316 Arginase superfamily protein; structural genomics, 8e-34
1woh_A305 Agmatinase; alpha/beta fold, hydrolase; 1.75A {Dei 1e-32
3m1r_A322 Formimidoylglutamase; structural genomics, PSI-2, 1e-32
4dz4_A324 Agmatinase; hydrolase; 1.70A {Burkholderia thailan 5e-32
1gq6_A313 Proclavaminate amidino hydrolase; clavaminic, PAH, 7e-31
1xfk_A336 Formimidoylglutamase; formiminoglutamase protein, 5e-28
3niq_A326 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pse 2e-26
2cev_A299 Protein (arginase); enzyme, hydrolase, arginine hy 2e-25
1pq3_A306 Arginase II, mitochondrial precursor; biosynthetic 8e-25
2ef5_A290 Arginase; TTHA1496, structural genomic NPPSFA, nat 2e-24
2aeb_A322 Arginase 1; hydrolase, binuclear manganese cluster 2e-23
4g3h_A330 Arginase (ROCF); rossmann fold, hydrolytic enzyme, 1e-22
3nio_A319 Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: M 9e-22
3sl1_A413 Arginase; metallohydrolase, hydrolase-hydrolase in 4e-20
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1} Length = 313 Back     alignment and structure
 Score =  137 bits (347), Expect = 1e-38
 Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 64  LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 120
           + G+P  + SS+ +G  +AP  IR A      N  +     G +L    +  D+GD+   
Sbjct: 39  VFGIPFDNTSSYRRGSKYAPDSIRGA----YVNLESYEYSYGIDLLASGMA-DLGDMEES 93

Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
                  D + +++ +   V  VM +  + P++LGG+HSI+   +RA+ + +     ++ 
Sbjct: 94  ------EDVEYVIDTVESVVSAVMSDGKI-PIMLGGEHSITVGAVRALPKDVD----LVI 142

Query: 181 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 240
           +DAH D   ++ GNKY+HA    R ++     R+  +GIRS+++E  E      V     
Sbjct: 143 VDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISS 202

Query: 241 RTFSRD 246
               ++
Sbjct: 203 FDVKKN 208
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile} Length = 287 Back     alignment and structure
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1 Length = 316 Back     alignment and structure
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A Length = 305 Back     alignment and structure
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis} Length = 322 Back     alignment and structure
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis} Length = 324 Back     alignment and structure
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A Length = 313 Back     alignment and structure
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1 Length = 336 Back     alignment and structure
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A Length = 326 Back     alignment and structure
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A* Length = 299 Back     alignment and structure
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1 Length = 306 Back     alignment and structure
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A Length = 290 Back     alignment and structure
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ... Length = 322 Back     alignment and structure
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori} Length = 330 Back     alignment and structure
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} Length = 319 Back     alignment and structure
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A* Length = 413 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
3nio_A319 Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: M 100.0
3m1r_A322 Formimidoylglutamase; structural genomics, PSI-2, 100.0
3niq_A326 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pse 100.0
1gq6_A313 Proclavaminate amidino hydrolase; clavaminic, PAH, 100.0
4dz4_A324 Agmatinase; hydrolase; 1.70A {Burkholderia thailan 100.0
1woh_A305 Agmatinase; alpha/beta fold, hydrolase; 1.75A {Dei 100.0
2a0m_A316 Arginase superfamily protein; structural genomics, 100.0
3lhl_A287 Putative agmatinase; protein structure initiative 100.0
1xfk_A336 Formimidoylglutamase; formiminoglutamase protein, 100.0
3pzl_A313 Agmatine ureohydrolase; structural genomics, PSI-2 100.0
2cev_A299 Protein (arginase); enzyme, hydrolase, arginine hy 100.0
2ef5_A290 Arginase; TTHA1496, structural genomic NPPSFA, nat 100.0
2aeb_A322 Arginase 1; hydrolase, binuclear manganese cluster 100.0
1pq3_A306 Arginase II, mitochondrial precursor; biosynthetic 100.0
4g3h_A330 Arginase (ROCF); rossmann fold, hydrolytic enzyme, 100.0
3sl1_A413 Arginase; metallohydrolase, hydrolase-hydrolase in 100.0
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0 Back     alignment and structure
Probab=100.00  E-value=3.1e-48  Score=364.22  Aligned_cols=205  Identities=25%  Similarity=0.436  Sum_probs=174.1

Q ss_pred             ccccccccchhhhhhhhhhhhHHHhhhcCCcCcEEEEEeecCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCC
Q 022416           29 GQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDP  108 (297)
Q Consensus        29 ~~~~~~~~~~tf~~~~~~~~~~~~~~l~~~~~~i~llGvP~D~g~s~r~Ga~~GP~aIR~a~~~~~~~~~~~~g~~~~~~  108 (297)
                      .....|+|+.||+|+|+.-+.   .++++  ++++|+|+|||.|+++|+|+++||++||+++..+..+. .+.+.+.+..
T Consensus        12 ~~~~~~~g~~tf~~~p~~~~~---~~~~~--~~i~iiGvP~D~g~s~r~Ga~~GP~aIR~as~~l~~~~-~~~~~~~~~~   85 (319)
T 3nio_A           12 NEMPRFGGIATMMRLPHVQSP---AELDA--LDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYN-MATGAAPFDS   85 (319)
T ss_dssp             TTSCTTCSCCCGGGCCBCCSH---HHHTT--CSEEEEECCCCTTCSSCCCGGGHHHHHHHHGGGCCSEE-TTTCBCGGGT
T ss_pred             ccCCCcCCCccccCCCCcCCc---cccCC--CCEEEEeeeeCCCCCCCchHHHHHHHHHHHhhhccccC-cccCcccccC
Confidence            344579999999999983211   12334  49999999999999999999999999999998765432 2233332233


Q ss_pred             ccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeCCCCcchHHhHHHHHHHcCCCeEEEEEecCCCCC
Q 022416          109 RVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIY  188 (297)
Q Consensus       109 ~~i~D~GDv~~~~~~~~~~~~~~~~~~l~~~v~~vl~~g~~~pIvLGGDHsit~~~i~al~~~~~~~i~VI~fDAH~Dl~  188 (297)
                      ..++|+||+.+.+     .+.+++++++++++++++++| .+||+||||||+|+|+++|+++++ ++++|||||||+|+|
T Consensus        86 ~~v~D~Gdv~~~~-----~~~~~~~~~i~~~v~~~l~~g-~~pi~lGGdHsit~~~~~al~~~~-~~l~vI~~DAH~Dl~  158 (319)
T 3nio_A           86 LNVADIGDVAINT-----FNLLEAVRIIEQEYDRILGHG-ILPLTLGGDHTITLPILRAIXKXH-GXVGLVHVDAHADVN  158 (319)
T ss_dssp             SCEEEEEECCCCT-----TCHHHHHHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHHHHHHHH-CSEEEEEECSSCCCC
T ss_pred             CcEEEecCCCCCC-----CCHHHHHHHHHHHHHHHHHCC-CEEEEECCcchhhHHHHHHHHhhc-CceEEEEEecCcccC
Confidence            4689999998865     468999999999999999999 699999999999999999999988 599999999999999


Q ss_pred             CCCCCCccCCchHHHHHHcCCC--CCcEEEEeeCC--CCHHHHHHHHHcCCeEEEccccccc
Q 022416          189 DAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYEMRTFSRD  246 (297)
Q Consensus       189 ~~~~G~~~shGt~~~~~~e~g~--~~~iv~iGiR~--~~~~e~~~~~~~gv~~~~~~di~~~  246 (297)
                      +++.|+.++|||||+++++++.  +++++|||+|+  ++++|+++++++|+.+++++++++.
T Consensus       159 ~~~~g~~~~hG~~~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~  220 (319)
T 3nio_A          159 DHMFGEXIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHX  220 (319)
T ss_dssp             SCBTTBSCSTTTHHHHHHHTTCEEEEEEEEEEECSEESSTHHHHHHHHHTCEEEEGGGTTTC
T ss_pred             CCCCccccccccHHHHHhhccCCCCCcEEEEEeCCCCCCHHHHHHHHhcCcEEEEHHHhhhc
Confidence            9988888999999999999874  47999999998  6899999999999999999999864
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis} Back     alignment and structure
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A Back     alignment and structure
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A Back     alignment and structure
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis} Back     alignment and structure
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A Back     alignment and structure
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1 Back     alignment and structure
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile} Back     alignment and structure
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1 Back     alignment and structure
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1} Back     alignment and structure
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A* Back     alignment and structure
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A Back     alignment and structure
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ... Back     alignment and structure
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1 Back     alignment and structure
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori} Back     alignment and structure
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 297
d1xfka_324 c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio ch 1e-16
d1pq3a_306 c.42.1.1 (A:) Arginase {Human (Homo sapiens), isof 6e-13
d1gq6a_301 c.42.1.1 (A:) Proclavaminate amidino hydrolase {St 8e-13
d2aeba1309 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) 3e-12
d2a0ma1298 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [T 3e-11
d1woha_303 c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans 4e-11
d2ceva_298 c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId 3e-10
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]} Length = 324 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Formimidoylglutamase HutG
species: Vibrio cholerae [TaxId: 666]

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 35/224 (15%)

Query: 64  LLGVPLGHNSSFLQ---GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
           L+G          +   G   AP  I++A+               + P  + D+G++  +
Sbjct: 38  LIGFECDAGVERNKGRTGAKHAPSLIKQALA----------NLAWHHPIPIYDLGNIRCE 87

Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------G 174
                G + ++      + ++  +       +VLGG H I++   + +++          
Sbjct: 88  -----GDELEQAQQECAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQP 140

Query: 175 PVDVLHLDAHPDIYDA---FEGNKYSHASSFARIMEGGYAR------RLLQVGIRSITKE 225
            + +++ DAH D+          + S  + F +I      +        L V   S T  
Sbjct: 141 RIGIINFDAHFDLRTFESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPA 200

Query: 226 GREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQL 269
             E+  + GV   E + FS              +    ++   +
Sbjct: 201 LFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTI 244
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]} Length = 306 Back     information, alignment and structure
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]} Length = 301 Back     information, alignment and structure
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 Back     information, alignment and structure
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId: 5693]} Length = 298 Back     information, alignment and structure
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId: 1299]} Length = 303 Back     information, alignment and structure
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]} Length = 298 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d1gq6a_301 Proclavaminate amidino hydrolase {Streptomyces cla 100.0
d1woha_303 Agmatinase {Deinococcus radiodurans [TaxId: 1299]} 100.0
d2a0ma1298 Arginase {Trypanosoma cruzi [TaxId: 5693]} 100.0
d1xfka_324 Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 100.0
d2aeba1309 Arginase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2ceva_298 Arginase {Bacillus caldovelox [TaxId: 33931]} 100.0
d1pq3a_306 Arginase {Human (Homo sapiens), isoform II, mitoch 100.0
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Arginase-like amidino hydrolases
domain: Proclavaminate amidino hydrolase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=7.4e-45  Score=336.23  Aligned_cols=198  Identities=25%  Similarity=0.400  Sum_probs=167.5

Q ss_pred             ccccchhhhhhhhhhhhHHHhhhcCCcCcEEEEEeecCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCcccc
Q 022416           33 VIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLT  112 (297)
Q Consensus        33 ~~~~~~tf~~~~~~~~~~~~~~l~~~~~~i~llGvP~D~g~s~r~Ga~~GP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~  112 (297)
                      -|+|+.||+|+|+      .+++.+.  ||+|+|+|||.|+++|+|+++||++||+++..+..+. .+.+.+..+...++
T Consensus         3 ~~~g~~tF~~~p~------~~~~~~~--di~ilGvP~D~g~s~r~Ga~~gP~aIR~as~~~~~~~-~~~~~~~~~~~~~~   73 (301)
T d1gq6a_           3 RYAQIPTFMRLPH------DPQPRGY--DVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVG-IDRGPGTFDLINCV   73 (301)
T ss_dssp             TTCSSCCGGGCCB------CSSCCSC--SEEEEEECCCTTCSSCCCGGGHHHHHHHHHTTCCSCC-SSCCSCHHHHSCEE
T ss_pred             CCCCchhhcCCCC------CCCcCCC--CEEEECCCccCCCCCCchHHHhHHHHHHHHhcccccC-cccccccccccccc
Confidence            4899999999998      4555555  9999999999999999999999999999987665432 22333333334689


Q ss_pred             ccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeCCCCcchHHhHHHHHHHcCCCeEEEEEecCCCCCCCCC
Q 022416          113 DVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE  192 (297)
Q Consensus       113 D~GDv~~~~~~~~~~~~~~~~~~l~~~v~~vl~~g~~~pIvLGGDHsit~~~i~al~~~~~~~i~VI~fDAH~Dl~~~~~  192 (297)
                      |+||+.+..     .+.+++++++++.++++++++ .+||+||||||+|+|.++|+.+.+ ++++|||||||+|+++++.
T Consensus        74 d~g~~~~~~-----~~~~~~~~~i~~~v~~~~~~~-~~pi~LGGdHsis~~~~~a~~~~~-~~~~vi~~DAH~Dl~~~~~  146 (301)
T d1gq6a_          74 DAGDINLTP-----FDMNIAIDTAQSHLSGLLKAN-AAFLMIGGDHSLTVAALRAVAEQH-GPLAVVHLDAHSDTNPAFY  146 (301)
T ss_dssp             EEEECCCCS-----SCHHHHHHHHHHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHHH-SSEEEEEECSSCCCCCCBT
T ss_pred             ccCcccccc-----hhhhhhhhhhHHHHHHHHhcC-Cceeecccccccccchhhhhhhcc-CceEEEEecccCCCCcccc
Confidence            999998765     468999999999999999999 699999999999999999999887 5899999999999999888


Q ss_pred             CCccCCchHHHHHHcCCC--CCcEEEEeeCCC--CHHHHHHHHHcCCeEEEccccccc
Q 022416          193 GNKYSHASSFARIMEGGY--ARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD  246 (297)
Q Consensus       193 G~~~shGt~~~~~~e~g~--~~~iv~iGiR~~--~~~e~~~~~~~gv~~~~~~di~~~  246 (297)
                      |+.++|||||+++++++.  +++++|+|+|++  .++++++.++.++.++++.++.+.
T Consensus       147 g~~~~~g~~~~~~~~~~~~~~~~~~~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (301)
T d1gq6a_         147 GGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGEL  204 (301)
T ss_dssp             TBTTCTTCHHHHHHHTTSEEEEEEEEEEECCC------CHHHHHTTCEEEEHHHHHHH
T ss_pred             CCCCCcchhHHHhhhccccCccceEEEEeccCcchhhHHHHHhccCceEeeHHHHHhh
Confidence            888999999999999875  479999999996  466788899999999999998874
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]} Back     information, alignment and structure
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II, mitochondrial [TaxId: 9606]} Back     information, alignment and structure