Citrus Sinensis ID: 022439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHcccccccccHccEEcccHHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtvdevgsssvwtKEQDKAFENALVsypedasdrwekiaadvpgksLEEIKQHYELLVDDVnriesgcvplpsynsssdgsmshagdegtsngkkgghyghfnsesngnkssrsdqerrkgiawteDEHRLFLLGldkygkgdwrsisrnfvvtrtptqvASHAQKYFIRLNsmnkdrrrssihditsvnngdisapqgpitgqtngsggggssgksskqppqhsagppgvgmygaptmgqpiggplvsavgtpvnlpapahmaygvrapvpgtvvpgapmnvspmpypmphasahr
Flexible Loop (DISEMBL)
mtvdevgsssvwtkeqdKAFENALVsypedasdrwEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFnsesngnkssrsdqERRKGiawtedehRLFLLgldkygkgdWRSISRNfvvtrtptqvashaqKYFIRlnsmnkdrrrsSIHDITsvnngdisapqgpITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR
Low Complexity Region (SEG)
MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNgsggggssgksskQPPQHSAGPPGVGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYgvrapvpgtvvpgapMNVSPMPYPMPHASAHR
Disordered region (IsUnstruct)
**********************************WEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCV****************************************************IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL*************************************************************************GPLVSAVGTPVNLPAPAHMAYGVRAPVP*************************
Disordered Region (DISOPRED)
****************DKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYG***********************WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQK***********************************************************************************************************************************
Disordered Region (DISEMBL)
************TKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSY*****************NGKKGGHYGHFNSE***************GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQT**********************PPGVGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR
Disordered Region (DISPRO)
***********WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYN*******************************************RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS***************************************************************P*MGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.632	0.612	0.525	1e-52
Q2V9B0	297	Transcription factor MYB1	N/A	no	0.299	0.299	0.617	3e-21
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.245	0.73	0.5	2e-16
Q6NNN0	81	Protein RADIALIS-like 3 O	no	no	0.222	0.814	0.530	1e-14
Q58FS3	93	Transcription factor RADI	N/A	no	0.239	0.763	0.478	3e-14
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.259	0.793	0.480	4e-14
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.235	0.693	0.485	1e-12
Q1G3C4	77	Protein RADIALIS-like 4 O	no	no	0.212	0.818	0.555	2e-12
Q8GW75	100	Protein RADIALIS-like 5 O	no	no	0.249	0.74	0.459	3e-12
Q869R9	734	Myb-like protein J OS=Dic	yes	no	0.205	0.083	0.515	6e-12

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 141/198 (71%), Gaps = 10/198 (5%)

Query: 3   VDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN 62
           ++E  S++ WT  ++KAFENAL  + E+  +RWE++A  VPGK++ ++ + Y+ L DDV+
Sbjct: 17  LEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVS 76

Query: 63  RIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSR---SDQERR 119
            IE+G VP+P Y++SS  ++      G    K+   YG     + G KSS    S+QER+
Sbjct: 77  SIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQS--YG-----TGGRKSSSGRPSEQERK 129

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KG+ WTE+EH+LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  KD+R
Sbjct: 130 KGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKR 189

Query: 180 RSSIHDITSVNNGDISAP 197
           R+SIHDIT+VN  D   P
Sbjct: 190 RASIHDITTVNLSDNQTP 207

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.
Antirrhinum majus (taxid: 4151)

>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 72/89 (80%)

Query: 100 GHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQ 159
           G+ +++      S S +ER++G+ WTE+EH+LFLLGL K GKGDWR ISRNFV TRTPTQ
Sbjct: 73  GYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQ 132

Query: 160 VASHAQKYFIRLNSMNKDRRRSSIHDITS 188
           VASHAQKYF+R +++N+ RRRSS+ DIT+
Sbjct: 133 VASHAQKYFLRRSNLNRRRRRSSLFDITT 161

Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance.

Solanum tuberosum (taxid: 4113)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 3/76 (3%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPL 71
          WT +Q+KAFE AL +Y +D  +RW+ +A  V GK+ EE+K+HYELLV D+N IE+G VP 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 72 PSYNSS---SDGSMSH 84
          P+Y +S   ++G +S 
Sbjct: 74 PNYRTSGGCTNGRLSQ 89

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 48/66 (72%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPL 71
          WT++++K FE AL +Y +D  DRW  +A  V GKS EE+++HYELL+ DVN IESG  P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 72 PSYNSS 77
          P+Y S+
Sbjct: 72 PNYRSN 77

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 50/71 (70%)

Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
          GS   W+ +++KAFE AL  Y +D  DRW  +A  V G++ EE+K+HYE+LV+D+  IES
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 67 GCVPLPSYNSS 77
          G VP P+Y ++
Sbjct: 66 GKVPFPNYRTT 76

Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity.

Antirrhinum majus (taxid: 4151)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
           S S WT  Q+K FE AL  Y +D  DRW  +A  V GK++EE+K+HY++LV+D+  IE+
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 67 GCVPLPSYNSSSDGSMS 83
          G VPLP+Y +    S S
Sbjct: 67 GRVPLPNYKTFESNSRS 83

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPL 71
          WT +Q+KAFE AL  Y +D  DRW  +A  V GK+ EE K+ Y+LLV D+  IE+G VP 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 72 PSYNSSSDGS 81
          P Y +++  S
Sbjct: 74 PDYKTTTGNS 83

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 16 QDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYN 75
          +DK FE AL  + +D  DRW+KIA  V GKS EE+K+HYELL+ DVN IESG  P P Y 
Sbjct: 15 EDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRYR 74

Query: 76 SSS 78
          +++
Sbjct: 75 NTN 77

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query: 15 EQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSY 74
          +Q+K FE AL  Y +D  DRW+ +A  V  KS EE+K+HY++LV+D+  IE   VPLP Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

Query: 75 NSSSDGSMSHAGDE 88
           +   GS S   D+
Sbjct: 75 KTVDVGSKSRGIDD 88

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 3/64 (4%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSI 183
           WT++EH  FL G+  +GKG W+ I++ FV TRTPTQ+ SHAQKY++R     K++R  SI
Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SI 435

Query: 184 HDIT 187
           HD++
Sbjct: 436 HDLS 439

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
224081308	295	predicted protein [Populus trichocarpa]	0.989	0.996	0.828	1e-137
255544127	295	DNA binding protein, putative [Ricinus c	0.989	0.996	0.838	1e-137
356521185	296	PREDICTED: uncharacterized protein LOC10	0.989	0.993	0.822	1e-137
449464296	295	PREDICTED: transcription factor DIVARICA	0.989	0.996	0.835	1e-135
302398973	294	MYBR domain class transcription factor [	0.976	0.986	0.808	1e-134
356575299	296	PREDICTED: uncharacterized protein LOC10	0.989	0.993	0.802	1e-132
356526842	296	PREDICTED: uncharacterized protein LOC10	0.989	0.993	0.809	1e-131
358248190	296	uncharacterized protein LOC100819797 [Gl	0.989	0.993	0.806	1e-131
302398969	291	MYBR domain class transcription factor [	0.973	0.993	0.799	1e-130
327412653	291	putative MYB transcription factor [Rosa	0.966	0.986	0.774	1e-124

>gi|224081308|ref|XP_002306366.1| predicted protein [Populus trichocarpa] gi|222855815|gb|EEE93362.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/298 (82%), Positives = 270/298 (90%), Gaps = 4/298 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           M+VDE GS S+WTKEQDKAFENAL +YPED SD WEKI ADV GK++EEIK HYELLV+D
Sbjct: 1   MSVDEGGSGSLWTKEQDKAFENALATYPEDTSDWWEKITADVAGKTVEEIKHHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           +++IE+GCVPLP+Y+SSS+GS SHA DEGT  GKKGGH GH NS+SN GNK+SRSDQERR
Sbjct: 61  ISQIEAGCVPLPNYSSSSEGSTSHAIDEGT--GKKGGHLGHHNSDSNNGNKASRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSV NGD++APQGPITGQTNGS   GSSGK++KQPP    GPPGVG+YG PT+
Sbjct: 179 RSSIHDITSVGNGDVAAPQGPITGQTNGS-AAGSSGKAAKQPPAQPVGPPGVGIYGPPTI 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMN+ PM YPMPH + HR
Sbjct: 238 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNMVPMTYPMPHTTTHR 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544127|ref|XP_002513126.1| DNA binding protein, putative [Ricinus communis] gi|223548137|gb|EEF49629.1| DNA binding protein, putative [Ricinus communis]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/298 (83%), Positives = 272/298 (91%), Gaps = 4/298 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDE   SSVWT+EQDKAFE+AL +YPED  DRWEKIAADVPGK+ EEIK HYELLV+D
Sbjct: 1   MTVDEADCSSVWTREQDKAFEDALATYPEDDLDRWEKIAADVPGKTSEEIKFHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSE-SNGNKSSRSDQERR 119
           VN+IE+GCVPLP+Y SSS+GS  HAGDEGTS  KKG H GH N+E ++GNK+SRSDQERR
Sbjct: 61  VNQIEAGCVPLPNY-SSSEGSTGHAGDEGTS--KKGSHLGHHNNEPAHGNKASRSDQERR 117

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 118 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 177

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSV NGDISAPQGPITGQTNGS GGGS+GK++K PPQH AG PGVG+YG+PT+
Sbjct: 178 RSSIHDITSVGNGDISAPQGPITGQTNGSAGGGSAGKATKHPPQHPAGSPGVGVYGSPTI 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQPIGGPLVSAVGTPVNLPAPAHMAYG+RAPVPGTVVPGAPMN+ PM YPMP  +AHR
Sbjct: 238 GQPIGGPLVSAVGTPVNLPAPAHMAYGIRAPVPGTVVPGAPMNMGPMAYPMPPTTAHR 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521185|ref|XP_003529238.1| PREDICTED: uncharacterized protein LOC100779792 [Glycine max]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/299 (82%), Positives = 266/299 (88%), Gaps = 5/299 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDEV SSS W++EQDKAFENAL ++ EDASDRWEKI ADVPGK++EEIKQHYELLV+D
Sbjct: 1   MTVDEVDSSSEWSREQDKAFENALATHLEDASDRWEKIVADVPGKTIEEIKQHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           +N+IESGCVPLPSYNSSS+GS SHA DEG   GKKG   GH++SESN G K+SRSDQERR
Sbjct: 61  INQIESGCVPLPSYNSSSEGSTSHASDEGA--GKKGSGPGHYSSESNHGTKASRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSV NGDISAPQGPITGQTNGS  G S+ K++K     S G PGVG+Y APT+
Sbjct: 179 RSSIHDITSVINGDISAPQGPITGQTNGS-AGNSTAKAAKTDTPASTGVPGVGIYAAPTI 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASA-HR 297
           GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPG VVPGAP+N+ PM YPMPH SA HR
Sbjct: 238 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGAVVPGAPVNMGPMTYPMPHTSAPHR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464296|ref|XP_004149865.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus] gi|449531095|ref|XP_004172523.1| PREDICTED: transcription factor DIVARICATA-like [Cucumis sativus]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/298 (83%), Positives = 270/298 (90%), Gaps = 4/298 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDE GSSS+W+ EQDKAFENAL S+PED SDRWEKIA DVPGK++EEIK HYELLV+D
Sbjct: 1   MTVDEAGSSSLWSLEQDKAFENALASHPEDDSDRWEKIAVDVPGKTIEEIKHHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           VN IESGCVPLPSY+SSSDGS +HAGDEGT+  KK GH+G+ N +SN G+K+SRSDQERR
Sbjct: 61  VNLIESGCVPLPSYSSSSDGSANHAGDEGTT--KKNGHFGNCNGDSNHGSKTSRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNK+RR
Sbjct: 119 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKERR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSV NGDISA QGPITGQ NGS G   SGK +KQPPQ +AGPPGVGMYG PTM
Sbjct: 179 RSSIHDITSVANGDISAAQGPITGQANGS-GAAPSGKPTKQPPQSAAGPPGVGMYGGPTM 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQP+GGPLVSAVGTPV+LPAPAHMAYGVRAPVPGTVVPGAP+N+ PM YPMP  SAHR
Sbjct: 238 GQPVGGPLVSAVGTPVSLPAPAHMAYGVRAPVPGTVVPGAPVNMGPMTYPMPPTSAHR 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398973|gb|ADL36781.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/298 (80%), Positives = 270/298 (90%), Gaps = 8/298 (2%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTV+EV SSS+WT+EQDK+FENAL +YPE++SDRWEKIAADV GK+LEEIK HY+LL++D
Sbjct: 4   MTVEEVVSSSLWTREQDKSFENALATYPENSSDRWEKIAADVQGKTLEEIKHHYDLLLED 63

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           + +IE+G VPLP YNSSS+GS SHA DEGT+  KKGGH G+++SESN G+K+SR+DQERR
Sbjct: 64  LTQIEAGVVPLPCYNSSSEGSTSHASDEGTN--KKGGHSGNYSSESNHGSKASRADQERR 121

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 122 KGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 181

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSVNNG+ISA QGPITGQ NG+   GSSGKS KQ P   AGPPGVGMYGAP++
Sbjct: 182 RSSIHDITSVNNGEISAAQGPITGQANGA-ALGSSGKSPKQSP---AGPPGVGMYGAPSI 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQPIGGPLVSAVGTPVNLPAP HMAYGVRAPVPG VVPGAPMN+ PM YPMPH S+HR
Sbjct: 238 GQPIGGPLVSAVGTPVNLPAPPHMAYGVRAPVPGGVVPGAPMNMVPMTYPMPH-SSHR 294

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575299|ref|XP_003555779.1| PREDICTED: uncharacterized protein LOC100797809 [Glycine max]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/299 (80%), Positives = 261/299 (87%), Gaps = 5/299 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDEV SSS W++EQDKAFENAL ++PED SDRWEKIAADVPGK++EEIKQHYELLV+D
Sbjct: 1   MTVDEVDSSSEWSREQDKAFENALATHPEDDSDRWEKIAADVPGKTIEEIKQHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           +N+IESGCVPLPSYNSSS+GS SHA DEG   GKKG   GH++ ESN G K+SRSDQERR
Sbjct: 61  INQIESGCVPLPSYNSSSEGSTSHASDEGA--GKKGSGPGHYSGESNHGTKASRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSVNNGDISAPQGPITGQTNGS G  ++  +       S G PGVG+Y APT+
Sbjct: 179 RSSIHDITSVNNGDISAPQGPITGQTNGSAGNFTAKAAKAA-TPASTGVPGVGIYAAPTI 237

Query: 240 GQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASA-HR 297
           GQPIGGPLVSAVGT VNLPAPAHMAYGVRAPVPG VVPGAP+N+ P+ YPM H S  HR
Sbjct: 238 GQPIGGPLVSAVGTTVNLPAPAHMAYGVRAPVPGAVVPGAPVNMGPVTYPMQHTSVPHR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526842|ref|XP_003532025.1| PREDICTED: uncharacterized protein LOC100820272 [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/299 (80%), Positives = 261/299 (87%), Gaps = 5/299 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDEVGSSS W+KEQDKAFENAL  +PEDASDRWEKIAADVPGK+LEEIK HYELLV+D
Sbjct: 1   MTVDEVGSSSEWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           VN+IESGCVPLPSYNSS +GS SHA DEG   GKKGGH  + N+ESN G K+SRSDQERR
Sbjct: 61  VNQIESGCVPLPSYNSSPEGSTSHASDEGA--GKKGGHSWNSNNESNHGTKASRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSVNNGD+SA QGPITGQTNGS     +GKS+K PP      PGVG+Y APT+
Sbjct: 179 RSSIHDITSVNNGDVSALQGPITGQTNGS-AANCAGKSTKPPPPTPTAAPGVGIYAAPTI 237

Query: 240 GQPIGGPLVSAVGTPV-NLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQPIGGPLVSAVGTPV NLP PAH+AYG+ APVP  VV GAPMN+ P+PYPM H SAHR
Sbjct: 238 GQPIGGPLVSAVGTPVMNLPPPAHIAYGLGAPVPRAVVAGAPMNLGPVPYPMSHTSAHR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248190|ref|NP_001240091.1| uncharacterized protein LOC100819797 [Glycine max] gi|255641236|gb|ACU20895.1| unknown [Glycine max]

 Score =  472 bits (1214), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/299 (80%), Positives = 261/299 (87%), Gaps = 5/299 (1%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTVDEVGSSS W+KEQDKAFENAL  +PEDASDRWEKIAADVPGK+LEEIK HYELLV+D
Sbjct: 1   MTVDEVGSSSQWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYELLVED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           V++IESG VPLPSYNSS +GS SHA +EG   GKKGGH  + N+ESN G K+SRSDQERR
Sbjct: 61  VSQIESGYVPLPSYNSSPEGSTSHASEEGA--GKKGGHSWNSNNESNHGTKASRSDQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYGAPTM 239
           RSSIHDITSVNNGD+SAPQGPITGQTNGS    S+GKS+K  P       GVG+Y  PT+
Sbjct: 179 RSSIHDITSVNNGDVSAPQGPITGQTNGS-ADNSAGKSTKPAPPAPTAALGVGIYAGPTI 237

Query: 240 GQPIGGPLVSAVGTPV-NLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           GQPIGGPLVSAVGTPV NLP PAHMAYG+ APVPG VVPGAPMN+ P+PYPMPH SA R
Sbjct: 238 GQPIGGPLVSAVGTPVMNLPPPAHMAYGLGAPVPGAVVPGAPMNLGPVPYPMPHTSARR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398969|gb|ADL36779.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/299 (79%), Positives = 266/299 (88%), Gaps = 10/299 (3%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           MTV+E G SS+WT+EQDKAFENAL  YPED+ DRWEKIAADV GK+LEEIK HY LL++D
Sbjct: 1   MTVEEAGCSSLWTREQDKAFENALAIYPEDSLDRWEKIAADVQGKTLEEIKHHYGLLLED 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           +++IE+G VPLP YNSSS+GS SHA DEGT+  KKGGH G+++SESN G+K+SR+DQERR
Sbjct: 61  ISQIEAGVVPLPCYNSSSEGSTSHASDEGTN--KKGGHSGNYSSESNHGSKASRADQERR 118

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHRLFLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 119 KGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 178

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGSSGKSSKQPPQHSAGPPGVGMYG-APT 238
           RSSIHDITSVNNG+ISA QGPITGQ NG+   GSSGKS+KQ P   AG PGVGMYG AP+
Sbjct: 179 RSSIHDITSVNNGEISAAQGPITGQANGA-AVGSSGKSTKQSP---AGAPGVGMYGNAPS 234

Query: 239 MGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNVSPMPYPMPHASAHR 297
           +GQPIGGPLVSAVGTPVNLPAP HMAYGV APVPG VVPGAPMN+ PM YPMPH S+HR
Sbjct: 235 IGQPIGGPLVSAVGTPVNLPAPPHMAYGVSAPVPG-VVPGAPMNMVPMTYPMPH-SSHR 291

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412653|emb|CCA29115.1| putative MYB transcription factor [Rosa hybrid cultivar]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/301 (77%), Positives = 263/301 (87%), Gaps = 14/301 (4%)

Query: 1   MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
           M+VDE  +S++WT EQDKAFENAL +YPEDA DRW+KIAADV GK+LEEIK HYELL+DD
Sbjct: 1   MSVDEAVASALWTWEQDKAFENALATYPEDAPDRWDKIAADVEGKNLEEIKHHYELLLDD 60

Query: 61  VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESN-GNKSSRSDQERR 119
           V++IE+GC+PLP YNSSS+GS SHA DEGTS  KKG    H++SESN G+K+SR+DQERR
Sbjct: 61  VSQIEAGCIPLPCYNSSSEGSTSHASDEGTS--KKG----HYSSESNHGSKASRADQERR 114

Query: 120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 179
           KGIAWTEDEHR FLLGL+KYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR
Sbjct: 115 KGIAWTEDEHRQFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRR 174

Query: 180 RSSIHDITSVNNGDISAPQGPITGQTNGSGGGGS-SGKSSKQPPQHSAGPPGVGMYGAPT 238
           RSSIHDITSVNNG+I+A QGPITGQ NGS  G S S KS+K   Q +AGPPGVGMYGAP+
Sbjct: 175 RSSIHDITSVNNGEIAAIQGPITGQGNGSAVGPSGSAKSTK---QSAAGPPGVGMYGAPS 231

Query: 239 MGQPIGGPLVSAVGTPVNLPAPA-HMAYGVRAPV-PGTVVPGAPMNVSPMPYPMPHASAH 296
           +GQPIGGPLVSAVGTPVNL   + HMAYGVRAP+ PG +VPGAPMN+ PM YPMPH +AH
Sbjct: 232 IGQPIGGPLVSAVGTPVNLAGHSPHMAYGVRAPMPPGALVPGAPMNMPPMTYPMPH-TAH 290

Query: 297 R 297
           R
Sbjct: 291 R 291

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.962	0.959	0.627	2.4e-92
TAIR|locus:2028461	314	AT1G49010 [Arabidopsis thalian	0.838	0.792	0.512	1.4e-62
TAIR|locus:2171711	337	AT5G23650 [Arabidopsis thalian	0.659	0.581	0.512	1.6e-53
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.643	0.622	0.517	1.3e-50
TAIR|locus:2154508	288	AT5G58900 [Arabidopsis thalian	0.609	0.628	0.543	1.7e-50
TAIR|locus:2042872	298	AT2G38090 [Arabidopsis thalian	0.609	0.607	0.518	4.7e-48
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.602	0.646	0.502	3.1e-44
TAIR|locus:2150149	267	AT5G01200 [Arabidopsis thalian	0.754	0.838	0.416	2.5e-42
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.562	0.634	0.524	3.2e-42
TAIR|locus:2075775	287	AT3G10580 [Arabidopsis thalian	0.289	0.299	0.545	2.4e-35

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 194/309 (62%), Positives = 215/309 (69%)

Query:     1 MTVDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD 60
             MTV+EV   SVW++E D AFE AL +  +++ +RWEKIAADVPGKS+E+IK+HYELLV+D
Sbjct:     1 MTVEEVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVED 60

Query:    61 VNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRK 120
             V RIESGCVPLP+Y S  +GS  HAGDEG S+ KKGG+  H   ESN    S+SDQERRK
Sbjct:    61 VTRIESGCVPLPAYGSP-EGSNGHAGDEGASS-KKGGN-SHAG-ESNQAGKSKSDQERRK 116

Query:   121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRR 180
             GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRR
Sbjct:   117 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRR 176

Query:   181 SSIHDITSVNNGDISAPQGPITGQTNXX---------XXXXXXXXXXXQPPQH-SAGPPG 230
             SSIHDITSV N D+S PQGPITGQ N                         Q  S  PPG
Sbjct:   177 SSIHDITSVGNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPG 236

Query:   231 VGMYGAPTMGQPIGGPLVSAVGTPVNLPAPAHMAYXXXXXXXXXXXX-XXXMNVSPMPYP 289
               MYG P +GQP       AVGTPVNLPAP HMAY                MN+  MPY 
Sbjct:   237 PPMYGTPAIGQP-------AVGTPVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYT 289

Query:   290 MPHA-SAHR 297
             MP   +AHR
Sbjct:   290 MPRTPTAHR 298

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2028461 AT1G49010 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 140/273 (51%), Positives = 176/273 (64%)

Query:    10 SVWTKEQDKAFENALVSY---PEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
             + W++E++KAFENA+  +    E   D+W K+++ VP K+LEE+K+HY++L++DV  IE+
Sbjct:     6 ATWSREEEKAFENAIALHCVEEEITEDQWNKMSSMVPSKALEEVKKHYQILLEDVKAIEN 65

Query:    67 GCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFN-----------SESNGNKS--SR 113
             G VPLP Y+      +  A    TS   +  H    +           S SNG +S  SR
Sbjct:    66 GQVPLPRYHHRKGLIVDEAAAAATSPANRDSHSSGSSEKKPNPGTSGISSSNGGRSGGSR 125

Query:   114 SDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173
             ++QERRKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++RTPTQVASHAQKYFIRLNS
Sbjct:   126 AEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNS 185

Query:   174 MNKDRRRSSIHDITSVNNGDISAPQGPITGQTNXXXXXXXXXXXXXQPPQHSAGPP---G 230
             MN+DRRRSSIHDIT+VNN   +   G    Q               QP QH   PP   G
Sbjct:   186 MNRDRRRSSIHDITTVNNQAPAVTGGGQQPQVVKHRPAQPQPQPQPQPQQHH--PPTMAG 243

Query:   231 VGMYGAPTMGQPIGGP---LVSAVGTPVNLPAP 260
             +GMYG   +GQPI  P   + SAVGTPV LP P
Sbjct:   244 LGMYGGAPVGQPIIAPPDHMGSAVGTPVMLPPP 276

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2171711 AT5G23650 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 103/201 (51%), Positives = 129/201 (64%)

Query:     5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRI 64
             E+   S W+K+ D AFE AL  Y +    RW+KIA  VPGK+LE++ +HY +L  DV  I
Sbjct:     6 EISVGSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVMLI 65

Query:    65 ESGCVPLPSYNSSSDGSMSHA-GDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIA 123
             ESGCV LP Y+   +    +A G E +    +GG+   + S+  G   S+  Q+RR+G+ 
Sbjct:    66 ESGCVRLPDYDDFLEEPNHNAFGKERSI--LEGGNDRKYESKHKGK--SKLKQKRRRGVP 121

Query:   124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSI 183
             W   EHR FL GL KYGKGDWRSISR+ VVTRT TQVASHAQKYF  +NS +K R+R SI
Sbjct:   122 WKPFEHRQFLHGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKYFAHINSEDKKRKRPSI 181

Query:   184 HDITSVNNGDISAPQGPITGQ 204
             HDIT   N  IS  Q PIT Q
Sbjct:   182 HDITIAENKSISTKQRPITWQ 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 101/195 (51%), Positives = 140/195 (71%)

Query:     3 VDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN 62
             ++E  S++ WT  ++KAFENAL  + E+  +RWE++A  VPGK++ ++ + Y+ L DDV+
Sbjct:    17 LEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVS 76

Query:    63 RIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGI 122
              IE+G VP+P Y++SS  ++      G    K+   YG    +S+  + S  +QER+KG+
Sbjct:    77 SIEAGFVPVPGYSTSSPFTLEWGSGHGFDGFKQS--YGTGGRKSSSGRPS--EQERKKGV 132

Query:   123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSS 182
              WTE+EH+LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  KD+RR+S
Sbjct:   133 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRAS 192

Query:   183 IHDITSVNNGDISAP 197
             IHDIT+VN  D   P
Sbjct:   193 IHDITTVNLSDNQTP 207

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 100/184 (54%), Positives = 132/184 (71%)

Query:     7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
             G  + WT  ++KAFENAL  Y ++  DRW+K+AA +PGK++ ++ + Y  L  DV+ IE+
Sbjct:    29 GEGATWTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVSSIEA 88

Query:    67 GCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTE 126
             G +P+P Y +S   ++  AG  G  NG K GH    N  S   +S   + ER+KG+ WTE
Sbjct:    89 GLIPVPGYITSPPFTLDWAGGGGGCNGFKPGHQV-CNKRSQAGRSP--ELERKKGVPWTE 145

Query:   127 DEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDI 186
             +EH+LFL+GL KYGKGDWR+ISRNFV+TRTPTQVASHAQKYFIR  S  KD+RR+SIHDI
Sbjct:   146 EEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDI 205

Query:   187 TSVN 190
             T+VN
Sbjct:   206 TTVN 209

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 96/185 (51%), Positives = 130/185 (70%)

Query:    12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPL 71
             WT E++K FENAL  Y +D  DRW ++AA +PGK++ ++ + Y  L +DV+ IE+G +P+
Sbjct:    29 WTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPI 88

Query:    72 PSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRS---DQERRKGIAWTEDE 128
             P Y S S  ++   G +G S        G++ S + G + S +   + ER+KG+ WTE+E
Sbjct:    89 PGYASDSF-TLDWGGYDGASGNNGFNMNGYYFSAAGGKRGSAARTAEHERKKGVPWTEEE 147

Query:   129 HRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITS 188
             HR FL+GL KYGKGDWR+I+RNFV TRTPTQVASHAQKYFIR  +  KD+RRSSIHDIT+
Sbjct:   148 HRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKYFIRQVNGGKDKRRSSIHDITT 207

Query:   189 VNNGD 193
             VN  D
Sbjct:   208 VNIPD 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 96/191 (50%), Positives = 129/191 (67%)

Query:     9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGC 68
             SS WTKE++K FE AL  Y +D  DRW K+AA +PGK++ ++ + Y  L +D+  IE+G 
Sbjct:    28 SSSWTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAGL 87

Query:    69 VPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDE 128
             VP+P Y S     ++  G +   + +    +  +    NG +    DQ+RRKG+ WTE+E
Sbjct:    88 VPIPGYRS-----VTPCGFDQVVSPRD---FDAYRKLPNGARGF--DQDRRKGVPWTEEE 137

Query:   129 HRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITS 188
             HR FLLGL KYGKGDWR+ISRNFV ++TPTQVASHAQKY+ R  S  KD+RR SIHDIT+
Sbjct:   138 HRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITT 197

Query:   189 VN--NGDISAP 197
             VN  N ++S P
Sbjct:   198 VNLLNANLSRP 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2150149 AT5G01200 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 97/233 (41%), Positives = 135/233 (57%)

Query:    10 SVWTKEQDKAFENALVSYPEDAS--DRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESG 67
             + WT E++K FE AL +Y +D    + W KIA  +PGK++ ++ + Y+ L DDV+ IE+G
Sbjct:    28 ATWTAEENKRFEKAL-AYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAG 86

Query:    68 CVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHY---GHFNSESNGN--KSSRSDQERRKGI 122
              +P+P Y   +  + +     G  N   G  Y   G  +S +  +  +S   ++ER+KG+
Sbjct:    87 LIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGV 146

Query:   123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSS 182
              WTEDEH  FL+GL KYGKGDWR+I+++FV TRTPTQVASHAQKYF+R  +  KD+RRSS
Sbjct:   147 PWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSS 206

Query:   183 IHDITSVNNGDISAPQGPITGQTNXXXXXXXXXXXXXQP-PQHSAGPPGVGMY 234
             IHDIT+VN  D  A     T                 QP P +S        Y
Sbjct:   207 IHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSY 259

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 96/183 (52%), Positives = 126/183 (68%)

Query:     8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESG 67
             SS  WTKE++K FE AL  Y ED+ DRW K+A+ +PGK++ ++ + Y  L +DV  IE+G
Sbjct:    29 SSGSWTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAG 88

Query:    68 CVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTED 127
              VP+P Y ++S    S  G + T   +K           +G + S  DQ+R+KG+ WTE+
Sbjct:    89 RVPIPGYPAAS----SPLGFD-TDMCRK---------RPSGARGS--DQDRKKGVPWTEE 132

Query:   128 EHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT 187
             EHR FLLGL KYGKGDWR+ISRNFVV++TPTQVASHAQKY+ R  S  KD+RR SIHDIT
Sbjct:   133 EHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDIT 192

Query:   188 SVN 190
             + N
Sbjct:   193 TGN 195

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2075775 AT3G10580 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query:   110 KSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169
             KS      ++KGI W+ +EHRLFL GL+KYGKGDW+SISR  V +R+P QVASHAQKYF+
Sbjct:    83 KSKTQGTGKKKGIPWSPEEHRLFLDGLNKYGKGDWKSISRECVTSRSPMQVASHAQKYFL 142

Query:   170 RLNSMNKDRRRSSIHDITSVNNGDISAP 197
             R    NK  +R SIHD+T  +  +++ P
Sbjct:   143 R--QKNKKGKRFSIHDMTLGDAENVTVP 168

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-07
cd11661	46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	2e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	1e-04
COG5114	432	COG5114, COG5114, Histone acetyltransferase comple	0.004

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDW---RSISRNFVVTR-TPTQVASHAQKYFIRL 171
           +  + WTED H  FL  + K G  DW   + I    VV   T  QVASH QKY ++ 
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR 170
            WTE+E  L +  + KYGK +W  I++     RT  Q     +     
Sbjct: 3   EWTEEEDELLIELVKKYGKNNWEKIAKEL-PGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168
            WTE+E  L L  + KYGK +W  I++  +  RTP Q     +   
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKE-LPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
            WT +E  L +  + K+G G+W  I+++    RT  Q  +    Y
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHL-PGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV 58
          WT+E+D+    A+  Y ++    WEKIA ++PG++ ++ ++ +  L+
Sbjct: 2  WTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV 58
          WT+E+D+     +  Y ++    WEKIA ++PG++ E+ ++ +  L+
Sbjct: 4  WTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLL 47

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 11 VWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
           WT E+D+    A+  +       W KIA  +PG++  + K  +
Sbjct: 3  PWTPEEDELLIEAVKKHGNG---NWSKIAKHLPGRTDNQCKNRW 43

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQV 160
           W+E E +LF  GL KYGK D+  I ++F+  ++  ++
Sbjct: 2   WSESEAKLFEEGLRKYGK-DFHDIRQDFLPWKSVGEL 37

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISR--NFVVTRTPTQ 159
           WT++E    + G++KYG G+W  I +   FV  RT   
Sbjct: 3   WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVD 40

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169
           W  DE  L +  LD  G G+W  I+  ++ +R   ++ SH  K + 
Sbjct: 66  WGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYD 110

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PLN03212	249	Transcription repressor MYB5; Provisional	99.88
PLN03091	459	hypothetical protein; Provisional	99.85
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.55
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.51
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.5
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.48
KOG0724	335	consensus Zuotin and related molecular chaperones	99.34
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.3
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.29
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.15
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.15
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.06
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.05
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.95
PLN03212	249	Transcription repressor MYB5; Provisional	98.91
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.87
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.82
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	98.74
PLN03091	459	hypothetical protein; Provisional	98.74
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.66
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.57
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	98.01
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.99
KOG4329	445	consensus DNA-binding protein [General function pr	97.95
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.95
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.94
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.91
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.85
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.6
KOG1194	534	consensus Predicted DNA-binding protein, contains	97.33
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.2
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	97.17
KOG4167	907	consensus Predicted DNA-binding protein, contains	97.14
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.11
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	97.08
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.05
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.88
COG5147	512	REB1 Myb superfamily proteins, including transcrip	96.83
KOG0385	971	consensus Chromatin remodeling complex WSTF-ISWI,	96.68
PLN03162	526	golden-2 like transcription factor; Provisional	96.49
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.35
KOG1878	1672	consensus Nuclear receptor coregulator SMRT/SMRTER	96.07
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.54
KOG4167	907	consensus Predicted DNA-binding protein, contains	94.81
KOG4468	782	consensus Polycomb-group transcriptional regulator	94.74
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.62
KOG4329	445	consensus DNA-binding protein [General function pr	94.58
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.47
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	94.24
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.21
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.17
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	93.73
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	93.52
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.51
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	93.05
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	92.86
KOG1194	534	consensus Predicted DNA-binding protein, contains	92.05
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	91.92
KOG2656	445	consensus DNA methyltransferase 1-associated prote	90.4
PRK13923	170	putative spore coat protein regulator protein YlbO	90.21
KOG3841	455	consensus TEF-1 and related transcription factor,	89.67
KOG4282	345	consensus Transcription factor GT-2 and related pr	88.77
KOG4468	782	consensus Polycomb-group transcriptional regulator	88.25
PRK13923	170	putative spore coat protein regulator protein YlbO	88.18
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	88.03
KOG4282	345	consensus Transcription factor GT-2 and related pr	88.01
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	87.74
PF11035	344	SnAPC_2_like: Small nuclear RNA activating complex	86.98
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	84.55
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	83.78
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	82.4
KOG0724	335	consensus Zuotin and related molecular chaperones	82.18

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.88  E-value=4.7e-22  Score=181.34  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC-CCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV-PGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHA   85 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V-pGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~   85 (297)
                      ..++.||+|||++|.++|++|+..   +|..||+.+ ++||.+||++||..++..                         
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~~g~gRT~KQCReRW~N~L~P-------------------------   74 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEG---RWRSLPKRAGLLRCGKSCRLRWMNYLRP-------------------------   74 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcc---cHHHHHHhhhcCCCcchHHHHHHHhhch-------------------------
Confidence            456789999999999999999975   499999998 599999999999977753                         


Q ss_pred             CCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439           86 GDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus        86 ~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                                                      ..+.++||+|||++|++++.+||. +|..||+ +|++||+.||+|||.
T Consensus        75 --------------------------------~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGRTDnqIKNRWn  120 (249)
T PLN03212         75 --------------------------------SVKRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGRTDNEIKNYWN  120 (249)
T ss_pred             --------------------------------hcccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCCCHHHHHHHHH
Confidence                                            012238999999999999999998 9999996 999999999999998


Q ss_pred             HHHHHH
Q 022439          166 KYFIRL  171 (297)
Q Consensus       166 ky~~r~  171 (297)
                      .++++.
T Consensus       121 s~LrK~  126 (249)
T PLN03212        121 THLRKK  126 (249)
T ss_pred             HHHhHH
Confidence            777654

>PLN03091 hypothetical protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=188.09  Aligned_cols=105  Identities=12%  Similarity=0.247  Sum_probs=90.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH   84 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~   84 (297)
                      ...++.||.|||++|+++|.+|+...   |.+||+.++ +||.+||++||..+++.                        
T Consensus        11 klrKg~WTpEEDe~L~~~V~kyG~~n---Ws~IAk~~g~gRT~KQCRERW~NyLdP------------------------   63 (459)
T PLN03091         11 KLRKGLWSPEEDEKLLRHITKYGHGC---WSSVPKQAGLQRCGKSCRLRWINYLRP------------------------   63 (459)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCcCC---HHHHhhhhccCcCcchHhHHHHhccCC------------------------
Confidence            34567899999999999999999854   999999885 89999999999976642                        


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439           85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus        85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                                                       ..++++||.|||++||+++++||. +|..||+ +|++||+.||++||
T Consensus        64 ---------------------------------~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPGRTDnqIKNRW  108 (459)
T PLN03091         64 ---------------------------------DLKRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPGRTDNEIKNLW  108 (459)
T ss_pred             ---------------------------------cccCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCCCCHHHHHHHH
Confidence                                             012238999999999999999999 9999996 99999999999999


Q ss_pred             HHHHHHHh
Q 022439          165 QKYFIRLN  172 (297)
Q Consensus       165 qky~~r~~  172 (297)
                      ...+++..
T Consensus       109 nslLKKkl  116 (459)
T PLN03091        109 NSCLKKKL  116 (459)
T ss_pred             HHHHHHHH
Confidence            98776643

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=8.1e-20  Score=167.49  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAG   86 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~   86 (297)
                      ..+.||.|||.+|++.|.+|+.+.   |..||..++ +|+.++||.||..++..                          
T Consensus         8 ~kGpWt~EED~~L~~~V~~~G~~~---W~~i~k~~gl~R~GKSCRlRW~NyLrP--------------------------   58 (238)
T KOG0048|consen    8 VKGPWTQEEDLTQIRSIKSFGKHN---GTALPKLAGLRRCGKSCRLRWTNYLRP--------------------------   58 (238)
T ss_pred             cCCCCChHHHHHHHHHHHHhCCCC---cchhhhhcCCCccchHHHHHhhcccCC--------------------------
Confidence            368999999999999999999985   999999999 99999999999865542                          


Q ss_pred             CCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHH
Q 022439           87 DEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQK  166 (297)
Q Consensus        87 ~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qk  166 (297)
                                                     ..|++.||+|||++|+++..+||. +|..||+ +++|||+++|+|||.-
T Consensus        59 -------------------------------~ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt  105 (238)
T KOG0048|consen   59 -------------------------------DLKRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNT  105 (238)
T ss_pred             -------------------------------CccCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHH
Confidence                                           113348999999999999999999 9999996 9999999999999977


Q ss_pred             HHHHHh
Q 022439          167 YFIRLN  172 (297)
Q Consensus       167 y~~r~~  172 (297)
                      .++|..
T Consensus       106 ~lkkkl  111 (238)
T KOG0048|consen  106 HLKKKL  111 (238)
T ss_pred             HHHHHH
Confidence            665543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.55  E-value=1.9e-14  Score=144.91  Aligned_cols=105  Identities=23%  Similarity=0.465  Sum_probs=90.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCC
Q 022439            3 VDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSM   82 (297)
Q Consensus         3 ~~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~   82 (297)
                      .+.+.+.+.||.+||.+|..||++|++..   |-+|-+.|||||..||++||...+..                      
T Consensus       354 LdPsikhg~wt~~ED~~L~~AV~~Yg~kd---w~k~R~~vPnRSdsQcR~RY~nvL~~----------------------  408 (939)
T KOG0049|consen  354 LDPSVKHGRWTDQEDVLLVCAVSRYGAKD---WAKVRQAVPNRSDSQCRERYTNVLNR----------------------  408 (939)
T ss_pred             cCccccCCCCCCHHHHHHHHHHHHhCccc---hhhHHHhcCCccHHHHHHHHHHHHHH----------------------
Confidence            35667788999999999999999999964   99999999999999999999977753                      


Q ss_pred             CCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHH
Q 022439           83 SHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVAS  162 (297)
Q Consensus        83 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~s  162 (297)
                                                         +.|.+.||-.||+.|+.+|++||.|+|.+||. +++.||..|..+
T Consensus       409 -----------------------------------s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~r  452 (939)
T KOG0049|consen  409 -----------------------------------SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRR  452 (939)
T ss_pred             -----------------------------------hhccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHH
Confidence                                               11334899999999999999999999999995 999999977766


Q ss_pred             HHHHHH
Q 022439          163 HAQKYF  168 (297)
Q Consensus       163 h~qky~  168 (297)
                      +-.++.
T Consensus       453 rR~R~~  458 (939)
T KOG0049|consen  453 RRLRLI  458 (939)
T ss_pred             HHHHHH
Confidence            544433

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.51  E-value=2.7e-14  Score=104.02  Aligned_cols=51  Identities=45%  Similarity=0.701  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCch---hhhhhhhcCCC-CHHHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDW---RSISRNFVVTR-TPTQVASHAQKYFIRL  171 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W---~~Iar~~v~tR-T~~Q~~sh~qky~~r~  171 (297)
                      +..||+|||++||+||+.||.|+|   +.|++.++.+| |..||+||+||||.++
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            458999999999999999999999   99996555677 9999999999999863

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.50  E-value=3.4e-14  Score=143.09  Aligned_cols=119  Identities=22%  Similarity=0.438  Sum_probs=101.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDE   88 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~   88 (297)
                      ..+||+|||.+|..+|...-.+....|.+|-.++||||..|.+-||...++.                            
T Consensus       305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdP----------------------------  356 (939)
T KOG0049|consen  305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDP----------------------------  356 (939)
T ss_pred             hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCc----------------------------
Confidence            3689999999999999999888888999999999999999999999754432                            


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439           89 GTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus        89 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                         +                          .|.++||.+||.+|+.++.+||..+|-+|- ..|++|++.|||.|   |.
T Consensus       357 ---s--------------------------ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~R---Y~  403 (939)
T KOG0049|consen  357 ---S--------------------------VKHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRER---YT  403 (939)
T ss_pred             ---c--------------------------ccCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHH---HH
Confidence               1                          133489999999999999999988999999 49999999999998   56


Q ss_pred             HHHhccCCCCCCCCcccccc
Q 022439          169 IRLNSMNKDRRRSSIHDITS  188 (297)
Q Consensus       169 ~r~~~~~k~~rr~si~d~t~  188 (297)
                      ++++...|..++.-.+|..+
T Consensus       404 nvL~~s~K~~rW~l~edeqL  423 (939)
T KOG0049|consen  404 NVLNRSAKVERWTLVEDEQL  423 (939)
T ss_pred             HHHHHhhccCceeecchHHH
Confidence            77777777777777666544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.48  E-value=3.7e-14  Score=99.09  Aligned_cols=45  Identities=36%  Similarity=0.673  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYF  168 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~  168 (297)
                      +||+|||++|+++|.+||.++|..||+ +|+ +||..||++||++|.
T Consensus         3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    3 PWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence            899999999999999999956999995 888 999999999999873

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=3.5e-12  Score=121.87  Aligned_cols=184  Identities=40%  Similarity=0.512  Sum_probs=140.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC----CChhHHHHhhhCCC-CCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCC-
Q 022439            9 SSVWTKEQDKAFENALVSYPED----ASDRWEKIAADVPG-KSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSM-   82 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~----~~~rWekIA~~VpG-RT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~-   82 (297)
                      ...|++++++.|++|++.|...    +.++|+++++.|++ ++..+.+++|..+..++..++++.+++|.|.....+.. 
T Consensus        31 ~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~  110 (335)
T KOG0724|consen   31 LSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAE  110 (335)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCcccccccc
Confidence            3569999999999999999864    78899999999999 99999999999999999999999999999987421111 


Q ss_pred             --CCCCCCCCCCCCCCCCCCcc------------CCCCCC--CCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhh
Q 022439           83 --SHAGDEGTSNGKKGGHYGHF------------NSESNG--NKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRS  146 (297)
Q Consensus        83 --~~~~~~~~~~~~~gg~~~~~------------~~~~~~--~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~  146 (297)
                        .....|....... .+....            .....+  .........++++..|++.++++++.++.++|+++|..
T Consensus       111 ~~~~~~~~~~~k~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (335)
T KOG0724|consen  111 VEEFYNFWPKFKSWR-QYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRK  189 (335)
T ss_pred             ccccCCccccccccc-cCCCCCCcccccccchhhhhhcccccccccchhhhhhccchhHHHHHHHHHhhhccccccccee
Confidence              0111111000000 011100            000000  01123345667888999999999999999999999999


Q ss_pred             hhhhhcCCCCHHHHHHHHH-----HHHHHHhccCCCCCCCCcccccccCCCC
Q 022439          147 ISRNFVVTRTPTQVASHAQ-----KYFIRLNSMNKDRRRSSIHDITSVNNGD  193 (297)
Q Consensus       147 Iar~~v~tRT~~Q~~sh~q-----ky~~r~~~~~k~~rr~si~d~t~~~~~~  193 (297)
                      |.++++..|++.|+.+|++     +|+.+.....+++++.++||++......
T Consensus       190 ~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  241 (335)
T KOG0724|consen  190 ISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITTASEAE  241 (335)
T ss_pred             chhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhccchhh
Confidence            9999999999999999998     9999999999999999999999866443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.30  E-value=6e-12  Score=91.30  Aligned_cols=43  Identities=23%  Similarity=0.550  Sum_probs=36.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhh
Q 022439           12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus        12 WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~   58 (297)
                      ||.|||.+|..++..|+.    +|.+||.+|+.||..+|+.||...+
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCcCCHHHHHHHHHHHC
Confidence            999999999999999975    3999999996699999999999733

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.29  E-value=4.3e-12  Score=88.58  Aligned_cols=47  Identities=32%  Similarity=0.730  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~   58 (297)
                      ++.||.|||++|++||.+|+.+   +|.+||..|+ +||..||+.||..++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            3679999999999999999997   5999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.15  E-value=6.8e-11  Score=79.14  Aligned_cols=44  Identities=36%  Similarity=0.721  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      +||+||+++|+.++.+||.++|..||+ ++++||..||+++|+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHh
Confidence            599999999999999999559999995 99999999999998765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.15  E-value=5.8e-11  Score=80.60  Aligned_cols=46  Identities=30%  Similarity=0.565  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      ..||+||+.+|+.++.+||.++|..||+ ++++||..+|+++|..++
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            3799999999999999999449999995 999999999999988764

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.06  E-value=1.9e-10  Score=83.41  Aligned_cols=42  Identities=36%  Similarity=0.711  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       124 WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      ||+|||++|+.++.+||. +|..||+ +++.||..||++||+++
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~   42 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNH   42 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHH
Confidence            999999999999999998 9999995 88789999999998763

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=2.9e-10  Score=112.72  Aligned_cols=102  Identities=22%  Similarity=0.424  Sum_probs=88.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD   87 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~   87 (297)
                      .++.|+.-||+.|..++.+|+.+.   |.+||+.++-+|++||+.||.+.++..                          
T Consensus         6 kggvwrntEdeilkaav~kyg~nq---ws~i~sll~~kt~rqC~~rw~e~ldp~--------------------------   56 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKNQ---WSRIASLLNRKTARQCKARWEEWLDPA--------------------------   56 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchHH---HHHHHHHHhhcchhHHHHHHHHHhCHH--------------------------
Confidence            568899999999999999999975   999999999999999999999766531                          


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439           88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus        88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                                                     .+..-|+.|||..||.+.+.+.. .|..|+.  +-+||..||-.||.++
T Consensus        57 -------------------------------i~~tews~eederlLhlakl~p~-qwrtIa~--i~gr~~~qc~eRy~~l  102 (617)
T KOG0050|consen   57 -------------------------------IKKTEWSREEDERLLHLAKLEPT-QWRTIAD--IMGRTSQQCLERYNNL  102 (617)
T ss_pred             -------------------------------HhhhhhhhhHHHHHHHHHHhcCC-ccchHHH--HhhhhHHHHHHHHHHH
Confidence                                           12347999999999999999999 9999995  6789999999998876


Q ss_pred             HHHHh
Q 022439          168 FIRLN  172 (297)
Q Consensus       168 ~~r~~  172 (297)
                      +-...
T Consensus       103 l~~~~  107 (617)
T KOG0050|consen  103 LDVYV  107 (617)
T ss_pred             HHHHH
Confidence            55443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=4.4e-10  Score=76.21  Aligned_cols=47  Identities=30%  Similarity=0.719  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~   58 (297)
                      +..||.|||++|..+++.|+..   +|..||..|++||..||+++|..++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~---~w~~Ia~~~~~rt~~~~~~~~~~~~   47 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            3579999999999999999942   3999999999999999999998765

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.95  E-value=1.6e-09  Score=72.35  Aligned_cols=44  Identities=32%  Similarity=0.747  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439           11 VWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus        11 ~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      .||+||+++|.+++..|+..   +|..||..|++||..||+++|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~---~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcC---CHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999953   399999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.91  E-value=1.6e-09  Score=99.46  Aligned_cols=49  Identities=24%  Similarity=0.449  Sum_probs=44.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFV-VTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v-~tRT~~Q~~sh~qky~~  169 (297)
                      ++.+||+|||++|+++|++||..+|..||+ .+ .+||..||+.||.+|+.
T Consensus        24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~   73 (249)
T PLN03212         24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLR   73 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhc
Confidence            455899999999999999999889999996 66 69999999999998874

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.87  E-value=6.2e-09  Score=105.82  Aligned_cols=103  Identities=21%  Similarity=0.430  Sum_probs=84.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD   87 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~   87 (297)
                      .++.||+||++.|.+.+.+++.+    |..|+..| ||....|+++|..++.-                           
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~----W~~Ig~~l-gr~P~~crd~wr~~~~~---------------------------  430 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND----WKEIGKAL-GRMPMDCRDRWRQYVKC---------------------------  430 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc----HHHHHHHH-ccCcHHHHHHHHHhhcc---------------------------
Confidence            67899999999999999999986    99999999 89999999999865531                           


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHH-------Hh-------C----------CC-
Q 022439           88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLD-------KY-------G----------KG-  142 (297)
Q Consensus        88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~-------k~-------G----------~g-  142 (297)
                              |            .        .++..+||.||.++||..|+       .|       |          .+ 
T Consensus       431 --------g------------~--------~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I  482 (607)
T KOG0051|consen  431 --------G------------S--------KRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDI  482 (607)
T ss_pred             --------c------------c--------ccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCc
Confidence                    0            0        02344899999999999995       33       1          11 


Q ss_pred             chhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          143 DWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       143 ~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +|..|+. .+.||+..||+.+|++...+-
T Consensus       483 ~Wt~vse-~~~TR~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  483 NWTLVSE-MLGTRSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             chhhhhH-hhcCCCcchHHHHHHHHHhhH
Confidence            7999995 999999999999999876653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.82  E-value=6.3e-09  Score=104.61  Aligned_cols=105  Identities=16%  Similarity=0.339  Sum_probs=90.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCC
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAG   86 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~   86 (297)
                      ...+.|++.||..|..++..|+...   |.+||+.|.-++.+||+.||...++.                          
T Consensus        18 ~k~gsw~~~EDe~l~~~vk~l~~nn---ws~vas~~~~~~~kq~~~rw~~~lnp--------------------------   68 (512)
T COG5147          18 RKGGSWKRTEDEDLKALVKKLGPNN---WSKVASLLISSTGKQSSNRWNNHLNP--------------------------   68 (512)
T ss_pred             ecCCCCCCcchhHHHHHHhhccccc---HHHHHHHhcccccccccchhhhhhch--------------------------
Confidence            3456899999999999999998865   99999999999999999999643331                          


Q ss_pred             CCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHH
Q 022439           87 DEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQK  166 (297)
Q Consensus        87 ~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qk  166 (297)
                                                     ..+...|++|||+.|+.+-..+|. .|..||. ++++||..||..+|.+
T Consensus        69 -------------------------------~lk~~~~~~eed~~li~l~~~~~~-~wstia~-~~d~rt~~~~~ery~~  115 (512)
T COG5147          69 -------------------------------QLKKKNWSEEEDEQLIDLDKELGT-QWSTIAD-YKDRRTAQQCVERYVN  115 (512)
T ss_pred             -------------------------------hcccccccHHHHHHHHHHHHhcCc-hhhhhcc-ccCccchHHHHHHHHH
Confidence                                           112338999999999999999999 9999995 9999999999999988


Q ss_pred             HHHHHhc
Q 022439          167 YFIRLNS  173 (297)
Q Consensus       167 y~~r~~~  173 (297)
                      .+....+
T Consensus       116 ~~~~~~s  122 (512)
T COG5147         116 TLEDLSS  122 (512)
T ss_pred             Hhhhhhc
Confidence            8777665

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=98.74  E-value=4.6e-09  Score=113.49  Aligned_cols=143  Identities=22%  Similarity=0.356  Sum_probs=95.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh----------hhhcccCCCCCCCCCCCCC
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD----------VNRIESGCVPLPSYNSSSD   79 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d----------v~~IesG~v~lp~y~~~~~   79 (297)
                      ..||+.|...|.+|+++|+.+.   .+.||..|.|||.+||+++++.+-+.          ++.||.|...+-.......
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~---~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~  901 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRND---IKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMK  901 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhH---HHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999864   99999999999999999776554322          4456666322211000000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhh-----------h
Q 022439           80 GSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSI-----------S  148 (297)
Q Consensus        80 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~I-----------a  148 (297)
                      ...          .+...+       ..+-...+......++..+|+|||+.||..+.+||-|+|..|           .
T Consensus       902 ~~~----------~k~~~~-------~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~f  964 (1033)
T PLN03142        902 AIG----------KKLDRY-------KNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRF  964 (1033)
T ss_pred             HHH----------HHHHHc-------cCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceee
Confidence            000          000000       000000001111234457999999999999999999999999           2


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          149 RNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       149 r~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      .+|+.+||+.++..|+.-++.-+.
T Consensus       965 d~~~~srt~~~~~~r~~~l~~~~~  988 (1033)
T PLN03142        965 DWFVKSRTPQELARRCDTLIRLIE  988 (1033)
T ss_pred             ehhhccCCHHHHHHHHHHHHHHHH
Confidence            478999999999999887666554

>PLN03091 hypothetical protein; Provisional

Probab=98.74  E-value=9.2e-09  Score=101.10  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=43.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFV-VTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v-~tRT~~Q~~sh~qky~~  169 (297)
                      ++..||.|||++|+++|++||.++|..||+ ++ .+||..|||.||.+|+.
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLd   62 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLR   62 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccC
Confidence            344899999999999999999989999996 66 59999999999987753

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.66  E-value=1.6e-08  Score=92.86  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYFI  169 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~~  169 (297)
                      ++||.|||.+|+..|++||.++|..|++ .++ +|+..+||-||.+|++
T Consensus        10 GpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen   10 GPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccC
Confidence            4999999999999999999999999996 888 9999999999999864

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.57  E-value=6.4e-08  Score=94.75  Aligned_cols=48  Identities=33%  Similarity=0.670  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      .||.+|+.+||+|+++||-|+|..|| ++|++||..+|+.||.|+|...
T Consensus        74 ~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   74 SWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcC
Confidence            79999999999999999999999999 5999999999999999999875

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=98.01  E-value=4.7e-06  Score=82.48  Aligned_cols=44  Identities=39%  Similarity=0.777  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      ..||.+|-.+||+||+.||. +|.+||+ +|++||..||.-|    |.++
T Consensus       280 k~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~----FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILH----FLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHH----HHcC
Confidence            48999999999999999999 9999997 9999999999998    6666

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.99  E-value=6e-06  Score=78.53  Aligned_cols=48  Identities=29%  Similarity=0.615  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      .|+.+|+.+|+++++..|.|+|..||. +|++|+..+|++||-||+..-
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIad-yiGsr~kee~k~HylK~y~es  112 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIAD-YIGSRAKEEIKSHYLKMYDES  112 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHH-HHhhhhhHHHHHHHHHHHhhc
Confidence            699999999999999999999999995 999999999999999988753

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=97.95  E-value=5.1e-05  Score=73.38  Aligned_cols=43  Identities=37%  Similarity=0.525  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                      -..||++|++.|.++|+.||| ++..|.++-|.+|+..+|..+|
T Consensus       277 l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVeyY  319 (445)
T KOG4329|consen  277 LSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEYY  319 (445)
T ss_pred             cccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHHH
Confidence            347999999999999999999 9999998999999999999874

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.95  E-value=2.7e-05  Score=56.77  Aligned_cols=48  Identities=17%  Similarity=0.363  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhH---HHHhhhCC-CC-CHHHHHHHHHHhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRW---EKIAADVP-GK-SLEEIKQHYELLV   58 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rW---ekIA~~Vp-GR-T~~Qcr~rY~~l~   58 (297)
                      .+-.||.||..+|.+||..|+.+.   |   .+|++.+. .+ |..||+.|++++.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999864   9   99999876 45 9999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.94  E-value=1.5e-05  Score=80.69  Aligned_cols=45  Identities=36%  Similarity=0.694  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +..||++|.-+||++|+.||. +|.+||. +|++||..||..|    |.++
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~-hVg~ks~eqCI~k----FL~L  297 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGD-DWNKVAD-HVGTKSQEQCILK----FLRL  297 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcc-cHHHHHh-ccCCCCHHHHHHH----HHhc
Confidence            458999999999999999999 9999995 9999999999998    7777

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.91  E-value=2e-05  Score=77.60  Aligned_cols=47  Identities=28%  Similarity=0.461  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ....||.+|+-+|.+|+..|+-++   |+.||.+|+.||.+||++||.+.
T Consensus        71 ~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGtKtkeeck~hy~k~  117 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFGN---WQDIADHIGTKTKEECKEHYLKH  117 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcccchHHHHHHHHHH
Confidence            456799999999999999999987   99999999999999999999854

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.85  E-value=1.4e-05  Score=79.12  Aligned_cols=46  Identities=24%  Similarity=0.481  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ....||++|.-+|.++|+.|+.+    |++||.+|..||.+||+.||..|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd----W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD----WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh----HHHHHHHhCCCCHHHHHHHHHcC
Confidence            44589999999999999999987    99999999999999999999755

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.60  E-value=8.6e-05  Score=75.19  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=45.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ..+.+..||++|+-+|..+|.+|+.+    |.+||.+|.+||.+||+.||..|
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~dd----W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGDD----WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhccc----HHHHHhccCCCCHHHHHHHHHhc
Confidence            56678899999999999999999997    99999999999999999999755

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=97.33  E-value=0.0019  Score=64.26  Aligned_cols=51  Identities=4%  Similarity=-0.143  Sum_probs=46.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      ...||.+|.-+++++|++||. ...-|+ +.++..+-.|+.+....|-+|++.
T Consensus       369 n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~mf  419 (534)
T KOG1194|consen  369 NRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQMF  419 (534)
T ss_pred             ccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHHHH
Confidence            458999999999999999999 999999 789999999999998888888764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.20  E-value=0.00063  Score=69.94  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=42.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      +.+.||+||++.|-..+.++|. +|..|++  .-+|.+..|+.+|+.|...
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~--~lgr~P~~crd~wr~~~~~  430 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK--ALGRMPMDCRDRWRQYVKC  430 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHH--HHccCcHHHHHHHHHhhcc
Confidence            4458999999999999999998 9999996  5789999999999976543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.17  E-value=0.0005  Score=65.71  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~   58 (297)
                      .-.|+.+|+-+|++++...+.++   |+-||.+|+.|+.+||+.||.++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGN---W~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGN---WEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34699999999999999999986   999999999999999999998654

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=97.14  E-value=0.00064  Score=70.76  Aligned_cols=45  Identities=27%  Similarity=0.413  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ...||..|.++|.+||..|.+|    +.+|+.+|++||++||.++|..-
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSKD----FIFVQKMVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             cccccHHHHHHHHHHHHHhccc----HHHHHHHhccccHHHHHHHHHHH
Confidence            4579999999999999999997    99999999999999999998533

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.11  E-value=0.00038  Score=70.03  Aligned_cols=49  Identities=24%  Similarity=0.529  Sum_probs=45.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      +++-|+..||+.|-.++.+||+..|++|++ .+.-+|..||+++|.+|+.
T Consensus         6 kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ld   54 (617)
T KOG0050|consen    6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLD   54 (617)
T ss_pred             ecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhC
Confidence            556899999999999999999989999996 9999999999999987754

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=97.08  E-value=0.001  Score=55.28  Aligned_cols=51  Identities=29%  Similarity=0.551  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---Cchhhh-----------hhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGK---GDWRSI-----------SRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~---g~W~~I-----------ar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +..||+|||+.||..+.+||-   |.|..|           ..+|+.+||+..+..|+.-++.-+
T Consensus        49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            448999999999999999999   899999           247899999999999988665544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.05  E-value=0.0023  Score=57.76  Aligned_cols=112  Identities=19%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC---CCCHHHHHHHHHHhhhhh--hhcccCC-CCCCCCCCCCCCCCCC
Q 022439           11 VWTKEQDKAFENALVSYPEDASDRWEKIAADVP---GKSLEEIKQHYELLVDDV--NRIESGC-VPLPSYNSSSDGSMSH   84 (297)
Q Consensus        11 ~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp---GRT~~Qcr~rY~~l~~dv--~~IesG~-v~lp~y~~~~~~~~~~   84 (297)
                      .|+.++|-+|++||..-..     -+.|+.-|.   .-|.+|+.+||..|+-|-  ..+.... ..+.            
T Consensus         1 rW~~~DDl~Li~av~~~~~-----L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~------------   63 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTND-----LESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLH------------   63 (199)
T ss_pred             CCCchhhHHHHHHHHHhcC-----HHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCC------------
Confidence            5999999999999987443     677777666   689999999999776541  1111000 0000            


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCC--Cchhhh----hhhhcCCCCHH
Q 022439           85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK--GDWRSI----SRNFVVTRTPT  158 (297)
Q Consensus        85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~--g~W~~I----ar~~v~tRT~~  158 (297)
                                        ++..         .....+..||.+|+++|.........  ..|.+|    ..-|-.+||+.
T Consensus        64 ------------------p~~~---------~~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak  116 (199)
T PF13325_consen   64 ------------------PELI---------AAIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAK  116 (199)
T ss_pred             ------------------cchh---------hcccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHH
Confidence                              0000         00112348999999999986655533  257777    11378999999


Q ss_pred             HHHHHHHH
Q 022439          159 QVASHAQK  166 (297)
Q Consensus       159 Q~~sh~qk  166 (297)
                      ++..||+.
T Consensus       117 ~L~~HW~l  124 (199)
T PF13325_consen  117 SLQDHWRL  124 (199)
T ss_pred             HHHHHHHH
Confidence            99999984

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.88  E-value=0.0011  Score=51.01  Aligned_cols=55  Identities=18%  Similarity=0.447  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHH------CC---CC-CChhHHHHhhhCC----CCCHHHHHHHHHHhhhhhhhc
Q 022439           10 SVWTKEQDKAFENALVS------YP---ED-ASDRWEKIAADVP----GKSLEEIKQHYELLVDDVNRI   64 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~------~p---~~-~~~rWekIA~~Vp----GRT~~Qcr~rY~~l~~dv~~I   64 (297)
                      ..||.+|..+|..++..      |.   .. ....|+.||..|.    .||..||+.+|+.|...-+.+
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~   70 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKI   70 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            57999999999998877      21   11 2237999999986    599999999999998876544

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=96.83  E-value=0.0017  Score=66.02  Aligned_cols=51  Identities=16%  Similarity=0.319  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv   61 (297)
                      .....|+.|||+.|..+-..++..    |..||..+++||..+|.++|..++++.
T Consensus        70 lk~~~~~~eed~~li~l~~~~~~~----wstia~~~d~rt~~~~~ery~~~~~~~  120 (512)
T COG5147          70 LKKKNWSEEEDEQLIDLDKELGTQ----WSTIADYKDRRTAQQCVERYVNTLEDL  120 (512)
T ss_pred             cccccccHHHHHHHHHHHHhcCch----hhhhccccCccchHHHHHHHHHHhhhh
Confidence            356789999999999999988875    999999999999999999999887764

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]

Probab=96.68  E-value=0.001  Score=69.95  Aligned_cols=137  Identities=25%  Similarity=0.320  Sum_probs=83.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh----------hhhcccCCCCCCCCCCCC
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD----------VNRIESGCVPLPSYNSSS   78 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d----------v~~IesG~v~lp~y~~~~   78 (297)
                      -..||+.|...|.+|..+|+.++   -+.||+.+.+ |++||...-+.+-+-          +..||.|...+..-....
T Consensus       795 ft~w~k~df~~fi~a~eKygr~d---i~~ia~~~e~-~~eev~~y~rvfwer~~el~d~ek~~~~ie~~e~~i~r~~~~~  870 (971)
T KOG0385|consen  795 FTNWTKRDFNQFIKANEKYGRDD---IENIAAEVEG-TPEEVGEYARVFWERLEELSDIEKIIYQIERGEKRIQRGDSIK  870 (971)
T ss_pred             ccchhhhhHHHHHHHhhccCcch---hhhhHHhhcC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHhhhhHHHHHH
Confidence            34699999999999999999975   8999999998 999998654433221          234555532221100000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCc---hhhh--------
Q 022439           79 DGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGD---WRSI--------  147 (297)
Q Consensus        79 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~---W~~I--------  147 (297)
                           .+.+     .+.+   ++    +.+ ...+..+...++...|++||+.|+.+|.++|-++   |..+        
T Consensus       871 -----~~ld-----~k~~---~~----k~p-~~l~i~~~~nk~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~  932 (971)
T KOG0385|consen  871 -----KALD-----DKIA---RY----KAP-HQLRIQYGTNKGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSP  932 (971)
T ss_pred             -----HHHh-----hhHh---hh----cCc-hheeeeeccccCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCc
Confidence                 0000     0000   00    001 0111122233666899999999999999999753   5555        


Q ss_pred             ---hhhhcCCCCHHHHHHHHHHH
Q 022439          148 ---SRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       148 ---ar~~v~tRT~~Q~~sh~qky  167 (297)
                         ..+|+.+||...+..|+.-|
T Consensus       933 ~frfdw~~~sRt~~el~Rr~ntl  955 (971)
T KOG0385|consen  933 QFRFDWFIKSRTAMELQRRCNTL  955 (971)
T ss_pred             ccccceeeehhhHHHHHhcCCee
Confidence               34688888887776665443

>PLN03162 golden-2 like transcription factor; Provisional

Probab=96.49  E-value=0.11  Score=50.99  Aligned_cols=57  Identities=26%  Similarity=0.338  Sum_probs=43.4

Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCC--chhhhhh-hhcCCCCHHHHHHHHHHHHHHHhcc
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKG--DWRSISR-NFVVTRTPTQVASHAQKYFIRLNSM  174 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g--~W~~Iar-~~v~tRT~~Q~~sh~qky~~r~~~~  174 (297)
                      +|.+..||.|=|++|+++|.+.|..  .=+.|-+ =-|.+=|..+|+||.|||...+..+
T Consensus       234 KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l  293 (526)
T PLN03162        234 KKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL  293 (526)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence            4456689999999999999999942  2344431 0267889999999999998877643

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.35  E-value=0.0089  Score=45.91  Aligned_cols=52  Identities=19%  Similarity=0.464  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHHH------hCC-----C--chhhhhhhhc----CCCCHHHHHHHHHHHHHHHhccC
Q 022439          123 AWTEDEHRLFLLGLDK------YGK-----G--DWRSISRNFV----VTRTPTQVASHAQKYFIRLNSMN  175 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k------~G~-----g--~W~~Iar~~v----~tRT~~Q~~sh~qky~~r~~~~~  175 (297)
                      .||.+|..+||..+..      |+.     +  -|..||. .+    ..||+.||+++|..+..+-....
T Consensus         3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7999999999998877      321     1  5999985 44    37999999999998776665443

>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]

Probab=96.07  E-value=0.0039  Score=69.09  Aligned_cols=44  Identities=18%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHH
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYE   55 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~   55 (297)
                      ....|+.+|-+.|+.-+..+.+.    +..||++|..||+.||.-.|+
T Consensus       224 ~~n~Ws~~Ek~~fk~rf~~H~kn----f~~~as~~erkSv~d~vlfyy  267 (1672)
T KOG1878|consen  224 RMNEWSPEEKELFKSRFAQHVKN----FGLIASFFERKSVSDCVLFYY  267 (1672)
T ss_pred             HhhhccccccccccchhhhcCcc----hhhhhhhhcccchhhceeeee
Confidence            34579999999999999999886    899999999999999987664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.54  E-value=0.02  Score=43.19  Aligned_cols=54  Identities=15%  Similarity=0.382  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC---C----------CChhHHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPE---D----------ASDRWEKIAADVP-----GKSLEEIKQHYELLVDDVN   62 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~---~----------~~~rWekIA~~Vp-----GRT~~Qcr~rY~~l~~dv~   62 (297)
                      ...||.+|...|.+.|..|..   +          ...-|+.|+..|.     .||..||++.|..+...++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            357999999999999998832   1          1247999999986     4999999999998876654

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=94.81  E-value=0.13  Score=54.32  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .-||..|-++|-.||-.|-+ |+..|++ +|++||..||..+|..+.
T Consensus       620 d~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyYYtWK  664 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYYYTWK  664 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHHHHHH
Confidence            47999999999999999999 9999996 999999999999865543

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=94.74  E-value=0.041  Score=56.66  Aligned_cols=52  Identities=29%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhh---------hhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSI---------SRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~I---------ar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      ++.||-.|...|..||++||+ ++.+|         +..-+..+|..|++-||.+...++++
T Consensus        88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k  148 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK  148 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence            458999999999999999999 99999         22357789999999998887777664

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.62  E-value=0.059  Score=52.88  Aligned_cols=46  Identities=22%  Similarity=0.395  Sum_probs=42.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL   56 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~   56 (297)
                      +..-.||.+|...|-+||.++|.+    +..|++.+|.|+.+||+-.|.+
T Consensus       363 ~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         363 KGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCchhHHHHHHHHHH
Confidence            344579999999999999999997    9999999999999999999974

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=94.58  E-value=0.054  Score=52.97  Aligned_cols=46  Identities=33%  Similarity=0.517  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHH-hhhCCCCCHHHHHHHHHHh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKI-AADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekI-A~~VpGRT~~Qcr~rY~~l   57 (297)
                      ..+.||++|=+.|+..|..|+++    +..| |..|+.|++.+|.+.|..-
T Consensus       276 ~l~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYlW  322 (445)
T KOG4329|consen  276 DLSGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYLW  322 (445)
T ss_pred             ccccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHHh
Confidence            34579999999999999999997    8888 7889999999999999743

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.47  E-value=0.067  Score=39.99  Aligned_cols=48  Identities=15%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC------C--chhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGK------G--DWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~------g--~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      .++|+|||++|+..|..+..      |  -|+.+++..+..+|-...++||.|.+.
T Consensus         3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~   58 (65)
T PF08914_consen    3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR   58 (65)
T ss_dssp             ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            48999999999999976532      2  499999755558888888999655443

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=94.24  E-value=0.82  Score=44.77  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVA  161 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~  161 (297)
                      =||.+||  |+++|+-.|..++..|-  ||.+||..|-+
T Consensus        90 W~TTD~D--L~~A~~S~G~~~~~dmK--FFENR~NGQSK  124 (498)
T KOG4849|consen   90 WYTTDAD--LLKALQSTGLAQFADMK--FFENRTNGQSK  124 (498)
T ss_pred             EEeccHH--HHHHHHhhhHHHHhhhh--hhhcccCCccc
Confidence            5898887  68888888876666665  77888776654

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.21  E-value=0.095  Score=43.64  Aligned_cols=56  Identities=23%  Similarity=0.472  Sum_probs=45.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC------------CCCHHHHHHHHHHhhhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP------------GKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp------------GRT~~Qcr~rY~~l~~dv   61 (297)
                      ...+..||.|||.-|...+.+||-+.++.|++|-..|-            .||+.++.+|-..|+.-|
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            34568899999999999999999988889999988654            799999999998776543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.17  E-value=0.075  Score=52.17  Aligned_cols=44  Identities=23%  Similarity=0.512  Sum_probs=39.7

Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHH
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASH  163 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh  163 (297)
                      +++..+||.+|-++|..||..+|- ++..|+ +++++|...||+-.
T Consensus       362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKaK  405 (507)
T COG5118         362 KKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKAK  405 (507)
T ss_pred             CCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHHH
Confidence            445568999999999999999999 999999 59999999999865

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=93.73  E-value=0.071  Score=46.61  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-C-----chhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          122 IAWTEDEHRLFLLGLDKYGK-G-----DWRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~-g-----~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      +.||.|||.+|-+.|.+|=+ |     .+..+++  --+||...|.-||+.|.+++-.
T Consensus         5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~--~L~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR--ALNRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH--HHcccHHHhcchHHHHHHHHHH
Confidence            37999999999999988743 2     5888885  4579999999999999987653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=93.52  E-value=0.095  Score=52.73  Aligned_cols=44  Identities=30%  Similarity=0.542  Sum_probs=40.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                      .-..|+..|-.+|.++|+|||+ ++..|-.+|++=++-..|..+|
T Consensus       284 emEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY  327 (693)
T KOG3554|consen  284 EMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY  327 (693)
T ss_pred             hhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence            3457999999999999999999 9999988999999999998774

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.51  E-value=0.31  Score=36.67  Aligned_cols=49  Identities=16%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCC-----------chhhhhhhh----cCCCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKY-----GKG-----------DWRSISRNF----VVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~-----G~g-----------~W~~Iar~~----v~tRT~~Q~~sh~qky~~r~  171 (297)
                      .||.+|.++|++.|.+|     |+.           .|..|+..|    ...||..||+..|.++....
T Consensus         4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            79999999999999886     421           599997422    23799999999998876554

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=93.05  E-value=0.18  Score=39.14  Aligned_cols=52  Identities=21%  Similarity=0.493  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHC------C-CC--CChhHHHHhhhCC-----CCCHHHHHHHHHHhhhhhh
Q 022439           11 VWTKEQDKAFENALVSY------P-ED--ASDRWEKIAADVP-----GKSLEEIKQHYELLVDDVN   62 (297)
Q Consensus        11 ~WT~EEdk~Le~Ala~~------p-~~--~~~rWekIA~~Vp-----GRT~~Qcr~rY~~l~~dv~   62 (297)
                      .||.++++.|..++...      + .+  ....|+.|+..|.     ..|.+||+.||..|..+-.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            59999999998887543      1 11  2457999999987     3688999999998876543

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=92.86  E-value=0.16  Score=51.18  Aligned_cols=44  Identities=32%  Similarity=0.538  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHH-hhhCCCCCHHHHHHHHHHh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKI-AADVPGKSLEEIKQHYELL   57 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekI-A~~VpGRT~~Qcr~rY~~l   57 (297)
                      -+||..|-.+||.||.+|+++    +..| +.+||=||...+.+.|...
T Consensus       286 EEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYmw  330 (693)
T KOG3554|consen  286 EEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYMW  330 (693)
T ss_pred             hhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHHH
Confidence            379999999999999999997    7666 7788999999999998643

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=92.05  E-value=0.3  Score=49.04  Aligned_cols=43  Identities=21%  Similarity=0.375  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQK  166 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qk  166 (297)
                      ..||.||--||..++..||+ ++.+|-+ .++.|+-..+.-+|..
T Consensus       188 d~WT~Ed~vlFe~aF~~~GK-~F~kIrq-~LP~rsLaSlvqyYy~  230 (534)
T KOG1194|consen  188 DEWTAEDIVLFEQAFQFFGK-DFHKIRQ-ALPHRSLASLVQYYYS  230 (534)
T ss_pred             ccchHHHHHHHHHHHHHhcc-cHHHHHH-HccCccHHHHHHHHHH
Confidence            37999999999999999999 9999996 9999999998876543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=91.92  E-value=0.13  Score=44.90  Aligned_cols=50  Identities=12%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC---CChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPED---ASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~---~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ...||.|||.+|...|-.|=..   .-.-++.|+..| +||..-|-=||..++.
T Consensus         4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            3469999999999999888321   123589999998 7999999999986655

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=90.40  E-value=0.17  Score=49.80  Aligned_cols=48  Identities=19%  Similarity=0.368  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh-----CCC-CCHHHHHHHHHHhhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAAD-----VPG-KSLEEIKQHYELLVDDV   61 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~-----VpG-RT~~Qcr~rY~~l~~dv   61 (297)
                      ..||.||...|-+++..|+.    ||-.||..     ++. ||++|.++||..+...+
T Consensus       131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l  184 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL  184 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence            57999999999999999998    48888776     555 99999999998766544

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=90.21  E-value=0.31  Score=43.05  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC------chhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG------DWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g------~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      ..||.|||.+|-+-|..|++.      .+..++.  .-+||..+|.-||..+.+++-
T Consensus         6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~--~L~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD--ALKRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHhhhHHHHHhHHHHHHHHHH
Confidence            379999999999988888864      2455553  457999999999987776543

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=89.67  E-value=1.5  Score=43.33  Aligned_cols=52  Identities=33%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---------------Cchhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhcc
Q 022439          122 IAWTEDEHRLFLLGLDKYGK---------------GDWRSISRNFV-----VTRTPTQVASHAQKYFIRLNSM  174 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~---------------g~W~~Iar~~v-----~tRT~~Q~~sh~qky~~r~~~~  174 (297)
                      +-|+++=++.|++||..|..               |+=..||| |+     .+||..||.||-|-+-+|+.+.
T Consensus        77 gvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~re  148 (455)
T KOG3841|consen   77 GVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLRE  148 (455)
T ss_pred             cccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999743               35567886 76     4788899999998777666543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=88.77  E-value=0.89  Score=43.81  Aligned_cols=54  Identities=17%  Similarity=0.361  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHH----hCCC-----chhhhhhh---hcCCCCHHHHHHHHHHHHHHHhccC
Q 022439          122 IAWTEDEHRLFLLGLDK----YGKG-----DWRSISRN---FVVTRTPTQVASHAQKYFIRLNSMN  175 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k----~G~g-----~W~~Iar~---~v~tRT~~Q~~sh~qky~~r~~~~~  175 (297)
                      ..|+.+|-+.||++..+    |..+     .|..||+.   .-.-||+.||+.++.+..++.++.+
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k  120 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK  120 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            48999999999988654    3334     49999852   2334999999999887766665544

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=88.25  E-value=0.69  Score=48.02  Aligned_cols=47  Identities=28%  Similarity=0.584  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHH----------hhhCCCCCHHHHHHHHHHhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKI----------AADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekI----------A~~VpGRT~~Qcr~rY~~l~   58 (297)
                      ++..||-.|...|-.||..|+++    +++|          -..+--||..||+++|..++
T Consensus        87 ~ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~  143 (782)
T KOG4468|consen   87 AKTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV  143 (782)
T ss_pred             cccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence            35689999999999999999997    8988          44445699999999997554

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=88.18  E-value=0.52  Score=41.70  Aligned_cols=48  Identities=10%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCC---hhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDAS---DRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~---~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ...||.|||.+|...|-.|.....   .-++.++..| +||...|..||...
T Consensus         5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~   55 (170)
T PRK13923          5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSV   55 (170)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHH
Confidence            457999999999999988865322   3467777777 79999999999543

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=88.03  E-value=1.2  Score=33.17  Aligned_cols=50  Identities=14%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC-----CCChhHHHHhhhCC-CCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPE-----DASDRWEKIAADVP-GKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~-----~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~   58 (297)
                      +..+|.|||.+|.+-|+.+..     ..+.-|..+++.-+ ..|-.--++||.+.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L   57 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHL   57 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            356899999999999976532     24568999999988 889899999997544

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=88.01  E-value=0.86  Score=43.92  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHC----C--CCCChhHHHHhhhCC----CCCHHHHHHHHHHhhhhhh
Q 022439           10 SVWTKEQDKAFENALVSY----P--EDASDRWEKIAADVP----GKSLEEIKQHYELLVDDVN   62 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~----p--~~~~~rWekIA~~Vp----GRT~~Qcr~rY~~l~~dv~   62 (297)
                      ..|+.+|-..|+.+....    .  .....-|+.||..+.    -||..||+.+|+.|....+
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk  117 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK  117 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            689999999998876543    1  112346999999554    4999999999987765443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=87.74  E-value=1.7  Score=33.54  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHHHHh-------CCC-----chhhhhhhh----cCCCCHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKY-------GKG-----DWRSISRNF----VVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~-------G~g-----~W~~Iar~~----v~tRT~~Q~~sh~qky~~r  170 (297)
                      .||+++++.||+++...       +.+     .|..|++.|    -...|..||+||++.+-+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999988553       122     488886422    2346789999997765443

>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like

Probab=86.98  E-value=1.9  Score=41.67  Aligned_cols=55  Identities=18%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv   61 (297)
                      .....||..|.+.|.++|+........+-..|+..|+||+..||++.-+.|...|
T Consensus        19 ~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rv   73 (344)
T PF11035_consen   19 TGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRV   73 (344)
T ss_pred             CCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence            3456899999999999998764434445777999999999999998877665443

SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=84.55  E-value=1.6  Score=48.39  Aligned_cols=47  Identities=26%  Similarity=0.538  Sum_probs=41.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      .||.-+=..|+.+..+||+.+...||. .|.+||..+|+.+++.|+.|
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~  872 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWER  872 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence            599999999999999999999999995 89999999999776666554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=83.78  E-value=8.3  Score=41.68  Aligned_cols=16  Identities=13%  Similarity=0.297  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHCCCCC
Q 022439           16 QDKAFENALVSYPEDA   31 (297)
Q Consensus        16 Edk~Le~Ala~~p~~~   31 (297)
                      ++..|.-++..|.+..
T Consensus       348 ~n~~ldvqlkvfdE~~  363 (1102)
T KOG1924|consen  348 NNDILDVQLKVFDEHK  363 (1102)
T ss_pred             ccHHHHHHHHHHhhhh
Confidence            3344444444444433

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=82.40  E-value=3.4  Score=27.99  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439           15 EQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus        15 EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      +=|..+.++|+.-+.-.   |..||+.+ |-|...|.+|.+.|
T Consensus         3 ~~D~~Il~~Lq~d~r~s---~~~la~~l-glS~~~v~~Ri~rL   41 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRS---YAELAEEL-GLSESTVRRRIRRL   41 (42)
T ss_dssp             HHHHHHHHHHHH-TTS----HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcc---HHHHHHHH-CcCHHHHHHHHHHh
Confidence            34778888888887655   99999999 89999999999876

...

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=82.18  E-value=0.34  Score=46.37  Aligned_cols=49  Identities=16%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      .||++|+..|.++|..|+. .|..|-+ ++..++..+.+.|+|+||-.+..
T Consensus        55 ~~t~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~p~~~~  103 (335)
T KOG0724|consen   55 RRTPDSWDKFAEALPLEKR-LEDKIEE-YIGLVFDVNIRESGQKPFPKYGK  103 (335)
T ss_pred             ccchhhhhHHHhcCccccc-cchhHHh-hhhhHHHHhhhhccCCCccccCc
Confidence            4999999999999999966 9999995 99999999999999999887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		2e-15
2m2e_A	73	Solution Nmr Structure Of The Sant Domain Of Human		5e-06
2cqr_A	73	Solution Structure Of Rsgi Ruh-043, A Myb Dna-Bindi		1e-05
4eef_G	74	Crystal Structure Of The Designed Inhibitor Protein		2e-05

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
          GS   W+ +++KAFE AL  Y +D  DRW  +A  V G++ EE+K+HYE+LV+D+  IES
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65
Query: 67 GCVPLPSYNSS 77
          G VP P+Y ++
Sbjct: 66 GKVPFPNYRTT 76

>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV 61
          WT E+ K  E AL +YP +  +RW+KIA  VPG++ ++  + Y+ LV+ V
Sbjct: 6  WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMV 55

>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding Domain In Human Cdna Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV 58
          WT+ Q K  E AL  YP  +SD W+KIA  VP KS E+    Y+LLV
Sbjct: 21 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67

>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL 56
          GS   W   ++ AFE AL    +D  DRW+K+A  V G++ EE+K+HYEL
Sbjct: 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
2cjj_A	93	Radialis; plant development, DNA-binding protein,	2e-36
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	8e-27
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	7e-26
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	6e-23
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	5e-19
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	2e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	3e-16
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-16
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-15
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-10
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-10
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-07
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	5e-10
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	7e-09
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	1e-08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	3e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-08
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	6e-07
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	6e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	4e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-06
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	8e-06
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-05
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	2e-05
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	3e-05
2crg_A	70	Metastasis associated protein MTA3; transcription	8e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score =  124 bits (313), Expect = 2e-36
 Identities = 34/79 (43%), Positives = 51/79 (64%)

Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIES 66
          GS   W+ +++KAFE AL  Y +D  DRW  +A  V G++ EE+K+HYE+LV+D+  IES
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 67 GCVPLPSYNSSSDGSMSHA 85
          G VP P+Y ++     +  
Sbjct: 66 GKVPFPNYRTTGGNMKTDE 84

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 99.1 bits (247), Expect = 8e-27
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 114 SDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173
           S       + WT +E  LF  GL K+G+  W  IS+  + +RT  QV S+A++YF     
Sbjct: 2   SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVK 59

Query: 174 MNKDRRRSS 182
              D+   +
Sbjct: 60  CGLDKETPN 68

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 5  EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
            G S  WT E+ + FE  L  +       W KI+  +  +++ ++K + 
Sbjct: 5  SSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYA 50

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 96.9 bits (241), Expect = 7e-26
 Identities = 23/56 (41%), Positives = 33/56 (58%)

Query: 7  GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN 62
          GS   W   ++ AFE AL    +D  DRW+K+A  V G++ EE+K+HYEL     +
Sbjct: 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYELEHHHHH 73

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 88.8 bits (220), Expect = 6e-23
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 4  DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNR 63
              +   WT+ Q K  E AL  YP  +SD W+KIA  VP KS E+    Y+LLV   + 
Sbjct: 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS 72

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 78.9 bits (194), Expect = 5e-19
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 116 QERRKGIAWTEDEHRLFLLGLDKYGKGD-----WRSISRNFVVTRTPTQVASHAQKYFIR 170
                   WT +E +     L KY   +     W+ I+   +  RT  QVAS  QKYFI+
Sbjct: 3   SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYFIK 61

Query: 171 LNSMNKD 177
           L      
Sbjct: 62  LTKAGIP 68

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 12 WTKEQDKAFENALVSYP--EDASDRWEKIAADVPGKSLEEIKQHY 54
          WT E+ K  E  L+ YP  E  S RW+KIA ++  ++ +++    
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQV 55

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 70.9 bits (174), Expect = 3e-16
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169
           W  DE  L +   +  G G+W  I+      RT  +   H  K +I
Sbjct: 12  WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 71.1 bits (174), Expect = 4e-16
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 110 KSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI 169
               S +E      WTE+E      GL ++G+ +W +I+R  V ++T +Q  +    Y  
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKK 62

Query: 170 RLN 172
           R N
Sbjct: 63  RQN 65

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 8  SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
              WT+E+    +  L+ +  +    W  IA  V  K++ + K  Y
Sbjct: 15 YFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFY 57

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 67.8 bits (166), Expect = 3e-15
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS 173
           WT  E    L  +   G G+W+ ++ N + T+T  +   H  KYF   +S
Sbjct: 11  WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGPSS 59

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
          WT +++ A   A++         W+ +A  +  K+ EE ++HY
Sbjct: 11 WTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHY 50

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 112 SRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVT-RTPTQ 159
             S     K   WT +E      G+ KYG+G+W +IS+N+    RT   
Sbjct: 2   EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 50

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 106 SNGNKSS-RSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA 164
           S+G+  +    +    G  WTE E  L L  L+ Y   DW  +S   V +RT  +   H 
Sbjct: 2   SSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHF 59

Query: 165 QKYFI 169
            +  I
Sbjct: 60  LRLPI 64

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 3  VDEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN 62
               +   WT+++      AL  Y +D    W K++  V  ++ +E   H+  L     
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVGSRTQDECILHFLRL----- 62

Query: 63 RIESGCVPLPSYNSSS 78
           IE   +       SS
Sbjct: 63 PIEDPYLENSDSGPSS 78

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 3/164 (1%)

Query: 9   SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGC 68
           +S+   +Q                 + EK +     ++  +  +   L  +DV  + +  
Sbjct: 22  ASMTGGQQMGRGSEFGRPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANA 81

Query: 69  VPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDE 128
               +     D  +  +      N K+         +         +  ++    WT +E
Sbjct: 82  TAATTVLRQLDMELV-SVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEE 140

Query: 129 HRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172
             L +  + KYG+ D+++IS   +  ++  QV +    Y  R N
Sbjct: 141 QLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 182

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 8  SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESG 67
           +  WT+E       ++V +P     RWEKIA ++ G+S+ ++    + L D V     G
Sbjct: 7  GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS-PG 64

Query: 68 CVPLPS 73
           V  PS
Sbjct: 65 MVSGPS 70

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 111 SSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASH 163
           SS S  +R+    WT+ E  +F     ++ K ++  I+  ++  ++      +
Sbjct: 2   SSGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY 52

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
          +VWT  + + F++  + +P++    +  IA+ +  KS+ +   +Y
Sbjct: 13 NVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYY 53

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 108 GNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHA 164
           G+      Q RR    ++  E    +  ++K G G WR +          RT   +    
Sbjct: 1   GSHMLEDPQ-RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDK- 58

Query: 165 QKYFIRLNSMNKDRRRSS 182
            K  +    ++  +RR  
Sbjct: 59  WKTLVHTAKISPQQRRGE 76

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 112 SRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVT-RTPTQ 159
           +      RK  AW  +E +    G+ KYG+G+W  I  ++    RT   
Sbjct: 1   TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 49

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 8/46 (17%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 9  SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
           ++W++++ + F    + +P++    +  IA+ +  K++ E   +Y
Sbjct: 43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 84

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 116 QERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASH 163
           ++R+    W+E E   F     ++ K ++  I+ +F+  +T  +   +
Sbjct: 38  KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLY 83

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVT-RTPTQ 159
           ++K   WT +E      G+ KYG+G+W +IS+N+    RT   
Sbjct: 2   KQK---WTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVM 41

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 110 KSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQV 160
            S  S  E+     WTEDE + F+ GL +YGK ++  I +  +  +   ++
Sbjct: 2   SSGSSGIEKC----WTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGEL 47

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVT-RTPTQ 159
           R+    W  +E +    G+ KYG+G+W  I  ++    RT   
Sbjct: 2   RQA---WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVM 41

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Length = 304

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 38/202 (18%), Positives = 62/202 (30%), Gaps = 51/202 (25%)

Query: 12  WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIK-------QHYELLVDD---V 61
           WTK     F  A   Y     D  + IA DV GK+ EE+        +    L D    +
Sbjct: 113 WTKRDFNQFIKANEKY---GRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIM 169

Query: 62  NRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKG 121
            +IE G           +G +        +  +K   Y     +      +       KG
Sbjct: 170 GQIERG-----------EGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGN------NKG 212

Query: 122 IAWTEDEHRLFLLGLDKYGKGDW-------RSISRN-------FVVTRTPTQVASHAQ-- 165
             +TE E R  +  L K G            +I  +       F+ +RT  ++       
Sbjct: 213 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272

Query: 166 -----KYFIRLNSMNKDRRRSS 182
                +  I L    +  ++  
Sbjct: 273 ITLIERENIELEEKERAEKKKK 294

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 109 NKSSRSDQERRKG-IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVT---RTPTQVASHA 164
           ++S R D  +R+    +T  E  L +  ++  G G WR +          RT   +    
Sbjct: 18  SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKW 77

Query: 165 QKYFIRLNSMNKDRRRSSI 183
           +      +   + RR + +
Sbjct: 78  KTLVHTASIAPQQRRGAPV 96

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTR---TPTQVASHAQKYFIRLNSM 174
           ++  + WT + H  FL  +D  G           ++     T   VASH QK+ + L  +
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63

Query: 175 N 175
           +
Sbjct: 64  S 64

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Length = 211

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 41/164 (25%)

Query: 12  WTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLVDDVNRIESGCV 69
           ++  + + F  +   +     +R + IA D  +  KS  ++++  EL+ +   +      
Sbjct: 10  FSDAEIRRFIKSYKKFG-GPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALK--- 65

Query: 70  PLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGN-------------KSSRSDQ 116
                    D S       G     KG  +     + N               KS  SD 
Sbjct: 66  ---------DSSSGTERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDP 116

Query: 117 ERRK-------------GIAWTEDEHRLFLLGLDKYGKGDWRSI 147
           E RK              I W +++    L+G+ +YG G W  I
Sbjct: 117 EERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMI 160

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQV 160
            W+  E  LF   L+KYGK D+  I ++F+  ++ T +
Sbjct: 10  EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSI 46

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 110 KSSRSDQERRKG-IAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQ 165
           KS RS+  +R+    ++  E    +  ++  G G WR +          RT   +    +
Sbjct: 5   KSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK 64

Query: 166 KYFIRLNSMNKDRRRS 181
              +   S+   +RR 
Sbjct: 65  TL-VHTASIAPQQRRG 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.94
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.93
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.93
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.92
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.92
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.89
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.88
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.81
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.8
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.72
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.65
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.64
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.63
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.58
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	99.56
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.55
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.55
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.53
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.52
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.52
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.49
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.49
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.47
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.46
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.43
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.41
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.41
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.4
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.38
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.37
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.37
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.35
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.34
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.34
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.34
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.33
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.33
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.32
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.32
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.29
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.29
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.28
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.27
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.26
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	99.26
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.25
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.21
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.21
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.19
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.18
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.18
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.15
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.14
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.13
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.1
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.08
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	99.06
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	99.05
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.03
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.02
2crg_A	70	Metastasis associated protein MTA3; transcription	98.99
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.46
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	98.86
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	98.83
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.83
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.81
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.77
2crg_A	70	Metastasis associated protein MTA3; transcription	98.66
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.63
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.62
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.61
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.58
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.49
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.05
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.99
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.98
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.97
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.89
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	97.8
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	97.79
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.92
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.72
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.55
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.31
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.18
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.83
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.76
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.7
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.98
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.45
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	91.67
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	80.81
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	80.62

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.94  E-value=2.6e-26  Score=184.94  Aligned_cols=104  Identities=15%  Similarity=0.359  Sum_probs=91.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEG   89 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~~   89 (297)
                      +.||.|||++|.++|..|+..   +|.+||.+|+|||..||++||..+++.            +                
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p------------~----------------   50 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMITRNPRQCRERWNNYINP------------A----------------   50 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTTTSCHHHHHHHHHHHSSS------------C----------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcCCCCHHHHHHHHHHHHcc------------c----------------
Confidence            679999999999999999974   499999999999999999999976642            0                


Q ss_pred             CCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439           90 TSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus        90 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                                                   .+.++||+|||.+|+.++.+||. +|..||+ +|++||+.||++||+.+.+
T Consensus        51 -----------------------------i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r   99 (107)
T 2k9n_A           51 -----------------------------LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIAR   99 (107)
T ss_dssp             -----------------------------CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHH
T ss_pred             -----------------------------ccccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHh
Confidence                                         01238999999999999999999 9999996 9999999999999999888


Q ss_pred             HHhccC
Q 022439          170 RLNSMN  175 (297)
Q Consensus       170 r~~~~~  175 (297)
                      +..+..
T Consensus       100 ~~~~~~  105 (107)
T 2k9n_A          100 HRAKHQ  105 (107)
T ss_dssp             HHHSST
T ss_pred             hHHHhh
Confidence            876443

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.93  E-value=6.5e-26  Score=181.50  Aligned_cols=101  Identities=24%  Similarity=0.499  Sum_probs=87.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD   87 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~   87 (297)
                      ..+.||.|||++|.+++.+|+..   +|.+||++|+|||..||++||..+++.            .              
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------~--------------   53 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLNP------------E--------------   53 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTCC------------C--------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhhcCCCHHHHHHHHHhccCC------------c--------------
Confidence            46789999999999999999975   399999999999999999999876531            0              


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439           88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus        88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                                                     .+.++||+|||++|++++++||. +|..||+ +|++||+.||++||+.+
T Consensus        54 -------------------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~  100 (105)
T 1gv2_A           54 -------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNST  100 (105)
T ss_dssp             -------------------------------CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHH
T ss_pred             -------------------------------ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHH
Confidence                                           02238999999999999999998 9999995 99999999999999876


Q ss_pred             HHH
Q 022439          168 FIR  170 (297)
Q Consensus       168 ~~r  170 (297)
                      +++
T Consensus       101 ~~~  103 (105)
T 1gv2_A          101 MRR  103 (105)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.93  E-value=1.6e-25  Score=185.39  Aligned_cols=105  Identities=21%  Similarity=0.452  Sum_probs=92.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH   84 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~   84 (297)
                      .....+.||.|||++|.+++++|+.    +|.+||+.|+|||..||++||..++..            .           
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p------------~-----------   59 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLAP------------S-----------   59 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTST------------T-----------
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhccc------------c-----------
Confidence            3456789999999999999999987    399999999999999999999976642            0           


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439           85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus        85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                                                        .+.++||+|||++|++++++||. +|..||+ +|++||+.||++||
T Consensus        60 ----------------------------------~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw  103 (126)
T 3osg_A           60 ----------------------------------ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRW  103 (126)
T ss_dssp             ----------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHH
T ss_pred             ----------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHH
Confidence                                              01238999999999999999998 9999995 99999999999999


Q ss_pred             HHHHHHHh
Q 022439          165 QKYFIRLN  172 (297)
Q Consensus       165 qky~~r~~  172 (297)
                      ..+++++.
T Consensus       104 ~~l~~k~~  111 (126)
T 3osg_A          104 VTISNKLG  111 (126)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhcC
Confidence            98887764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.92  E-value=2.9e-25  Score=184.79  Aligned_cols=103  Identities=17%  Similarity=0.330  Sum_probs=90.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDE   88 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~   88 (297)
                      .+.||.|||++|.++|..|+...   |..||.+|+|||..||++||..+++.            .               
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~l~p------------~---------------   51 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQN---WPRITSFLPNRSPKQCRERWFNHLDP------------A---------------   51 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCC---GGGGTTSCTTSCHHHHHHHHHHHTST------------T---------------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCC---HHHHHHHHCCCCHHHHHHHHhhccCc------------c---------------
Confidence            47899999999999999999754   99999999999999999999876642            0               


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439           89 GTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus        89 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                                                    .+.++||+|||++|++++.+||. +|..||+ +|++||+.||++||+.++
T Consensus        52 ------------------------------~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l   99 (131)
T 3zqc_A           52 ------------------------------VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSI   99 (131)
T ss_dssp             ------------------------------CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTT
T ss_pred             ------------------------------ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence                                          01238999999999999999998 9999996 999999999999998887


Q ss_pred             HHHhc
Q 022439          169 IRLNS  173 (297)
Q Consensus       169 ~r~~~  173 (297)
                      .+..+
T Consensus       100 ~~~~~  104 (131)
T 3zqc_A          100 SKRIS  104 (131)
T ss_dssp             GGGCC
T ss_pred             HHHhh
Confidence            66543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.92  E-value=5.8e-25  Score=182.05  Aligned_cols=103  Identities=23%  Similarity=0.485  Sum_probs=89.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCC
Q 022439            4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMS   83 (297)
Q Consensus         4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~   83 (297)
                      +.....+.||.|||++|.+++++|+..   +|.+||.+|+|||..||++||..+++.            .          
T Consensus        22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------~----------   76 (128)
T 1h8a_C           22 NPELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKGRIGKQCRERWHNHLNP------------E----------   76 (128)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHSSSCCHHHHHHHHHHTTCS------------S----------
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhcCCcHHHHHHHHHHhccc------------c----------
Confidence            334567899999999999999999975   399999999999999999999876531            0          


Q ss_pred             CCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHH
Q 022439           84 HAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASH  163 (297)
Q Consensus        84 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh  163 (297)
                                                         .+.++||+|||++|++++++||. +|..||+ +|++||+.||++|
T Consensus        77 -----------------------------------~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r  119 (128)
T 1h8a_C           77 -----------------------------------VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNH  119 (128)
T ss_dssp             -----------------------------------SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHH
T ss_pred             -----------------------------------cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHH
Confidence                                               02238999999999999999998 9999995 9999999999999


Q ss_pred             HHHHH
Q 022439          164 AQKYF  168 (297)
Q Consensus       164 ~qky~  168 (297)
                      |..++
T Consensus       120 ~~~~~  124 (128)
T 1h8a_C          120 WNSTM  124 (128)
T ss_dssp             HHTTT
T ss_pred             HHHHH
Confidence            87554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.89  E-value=4.9e-23  Score=176.22  Aligned_cols=102  Identities=23%  Similarity=0.465  Sum_probs=88.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH   84 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~   84 (297)
                      .....+.||.|||.+|.++++.|+..   +|..||.+|+|||..||++||..++..                        
T Consensus        54 p~~~~~~Wt~eEd~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p------------------------  106 (159)
T 1h89_C           54 PELIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLNP------------------------  106 (159)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHHCSC---CHHHHHHTSTTCCHHHHHHHHHHTTCT------------------------
T ss_pred             CCcCCCCCChHHHHHHHHHHHHhCcc---cHHHHHHHcCCCCHHHHHHHHHHHhCc------------------------
Confidence            34567899999999999999999974   499999999999999999999876531                        


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439           85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus        85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                                                       ..+..+||+|||++|++++++||. +|..||+ +|++||+.||++||
T Consensus       107 ---------------------------------~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~  151 (159)
T 1h89_C          107 ---------------------------------EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHW  151 (159)
T ss_dssp             ---------------------------------TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHH
T ss_pred             ---------------------------------cccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHH
Confidence                                             012238999999999999999998 9999996 99999999999998


Q ss_pred             HHHH
Q 022439          165 QKYF  168 (297)
Q Consensus       165 qky~  168 (297)
                      +.++
T Consensus       152 ~~~~  155 (159)
T 1h89_C          152 NSTM  155 (159)
T ss_dssp             HTTT
T ss_pred             HHHH
Confidence            7543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.88  E-value=1.8e-23  Score=178.94  Aligned_cols=100  Identities=19%  Similarity=0.418  Sum_probs=52.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGD   87 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~   87 (297)
                      ..+.||+|||++|.++|.+|+.+   +|..||++|+|||..||++||..++..                           
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p---------------------------   54 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLNP---------------------------   54 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCT---------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHccCC---------------------------
Confidence            46789999999999999999974   499999999999999999999865532                           


Q ss_pred             CCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439           88 EGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus        88 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                                                    ..+.++||+|||++|+.++++||.++|..||+ ++++||+.||++||++|
T Consensus        55 ------------------------------~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~  103 (159)
T 1h89_C           55 ------------------------------ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNH  103 (159)
T ss_dssp             ------------------------------TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHT
T ss_pred             ------------------------------CcCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHH
Confidence                                          00223899999999999999999768999995 99999999999999877


Q ss_pred             H
Q 022439          168 F  168 (297)
Q Consensus       168 ~  168 (297)
                      +
T Consensus       104 l  104 (159)
T 1h89_C          104 L  104 (159)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.81  E-value=5.9e-20  Score=138.62  Aligned_cols=67  Identities=30%  Similarity=0.587  Sum_probs=62.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCC
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYN   75 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~   75 (297)
                      .....||+|||++|++||++|+.++++||++||++| |||++||++||+.|++|+ .||+|++++|+|.
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~   72 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG   72 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence            345689999999999999999999999999999998 999999999999999996 7899999999873

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.80  E-value=7.4e-20  Score=144.43  Aligned_cols=70  Identities=49%  Similarity=0.956  Sum_probs=61.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCC
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNS   76 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~   76 (297)
                      .+...||.|||++|++||++|+.++++||++||++|||||.+||++||+.|++||..||+|.+++|+|..
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~   75 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT   75 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            4467899999999999999999998899999999999999999999999999999999999999999864

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.72  E-value=1.2e-17  Score=125.52  Aligned_cols=64  Identities=33%  Similarity=0.583  Sum_probs=59.2

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhccCCCCCCCCccc
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHD  185 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~~k~~rr~si~d  185 (297)
                      +..+||+|||++|++++++||. +|..||+ +|++||+.||++||++||+++.+.+.++++++||+
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s   71 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT   71 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            4459999999999999999999 9999996 99999999999999999999988788888888886

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.65  E-value=8.2e-17  Score=132.98  Aligned_cols=73  Identities=15%  Similarity=0.346  Sum_probs=43.9

Q ss_pred             HhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhh
Q 022439           38 IAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQE  117 (297)
Q Consensus        38 IA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~  117 (297)
                      ||+.|+|||..||++||..++..                                                         
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p---------------------------------------------------------   23 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNP---------------------------------------------------------   23 (128)
T ss_dssp             ---------------------CT---------------------------------------------------------
T ss_pred             CccccCCCCHHHHHHHHHHhhCC---------------------------------------------------------
Confidence            89999999999999999865532                                                         


Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      ..+.++||+|||++|++++++||.++|..||. +|++||..||+.||++|+
T Consensus        24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence            01223899999999999999999878999995 999999999999988765

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.64  E-value=2.6e-16  Score=118.94  Aligned_cols=55  Identities=44%  Similarity=0.693  Sum_probs=51.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv   61 (297)
                      .....||.|||++|++||++|+.++++||.+||++|||||.+||++||+.|++|+
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~   70 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP   70 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence            3556799999999999999999888899999999999999999999999999886

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.63  E-value=2.8e-16  Score=118.57  Aligned_cols=53  Identities=23%  Similarity=0.404  Sum_probs=49.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ....||+||+++|++||+.|+.++++||++||++|+|||++||++||+.|+.+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            45679999999999999999999999999999999999999999999988654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.58  E-value=1.2e-16  Score=120.00  Aligned_cols=50  Identities=46%  Similarity=0.769  Sum_probs=44.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL   56 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~   56 (297)
                      .+...||+||+++||+||++|++++++||++||+.|||||++||++||+.
T Consensus        18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999973

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=99.56  E-value=9.5e-16  Score=151.20  Aligned_cols=50  Identities=30%  Similarity=0.547  Sum_probs=46.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      ..+||+||+.+|+++|.+||+ +|..||+ +|+|||..||++||++|+++++
T Consensus       380 ~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhC
Confidence            569999999999999999999 9999995 9999999999999998887765

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.55  E-value=3.4e-15  Score=107.72  Aligned_cols=47  Identities=30%  Similarity=0.581  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYFI  169 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~~  169 (297)
                      .+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||.
T Consensus        10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A           10 ENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence            3899999999999999999779999995 999 9999999999999975

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.55  E-value=3.9e-15  Score=107.95  Aligned_cols=49  Identities=27%  Similarity=0.534  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      +.+||+|||++|+++|++||.++|..||+ +|++||+.||++||++|+..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence            34899999999999999999669999995 99999999999999988753

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.55  E-value=7.5e-15  Score=103.17  Aligned_cols=48  Identities=25%  Similarity=0.459  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      ..+||+|||++|++++++||.++|..||+ +|++||+.||++||++|+.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence            34899999999999999999989999995 9999999999999998863

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.55  E-value=5.7e-16  Score=145.27  Aligned_cols=143  Identities=23%  Similarity=0.290  Sum_probs=99.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh----------hhcccCCCCCCCCCCCCC
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV----------NRIESGCVPLPSYNSSSD   79 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv----------~~IesG~v~lp~y~~~~~   79 (297)
                      +.||+.|...|++|+++||.+.   |+.||+.|+|||.+||+++|+.|.+..          ..||.|...+........
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~---~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~  187 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK  187 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999864   999999999999999999998887665          457776544322110000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCC---Cchhhhh---h----
Q 022439           80 GSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK---GDWRSIS---R----  149 (297)
Q Consensus        80 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~---g~W~~Ia---r----  149 (297)
                      .....+.     .     +   .    .+-...+......++..||+|||+.||.+|.+||.   |+|..|.   +    
T Consensus       188 ~l~~Ki~-----~-----~---~----~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~  250 (304)
T 1ofc_X          188 ALDQKMS-----R-----Y---R----APFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQ  250 (304)
T ss_dssp             HHHHHHH-----T-----C---S----SHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGG
T ss_pred             HHHHHHH-----H-----h---c----CcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcc
Confidence            0000000     0     0   0    00000000001125568999999999999999999   9999995   2    


Q ss_pred             ----hhcCCCCHHHHHHHHHHHHHHHh
Q 022439          150 ----NFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       150 ----~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                          +||.+||+.+|..|++-++.-+.
T Consensus       251 FrFDwf~kSRTp~el~rRc~tLi~~ie  277 (304)
T 1ofc_X          251 FRFDWFIKSRTALELQRRCNTLITLIE  277 (304)
T ss_dssp             GTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence                69999999999999987765543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.7e-15  Score=112.40  Aligned_cols=51  Identities=39%  Similarity=0.578  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          121 GIAWTEDEHRLFLLGLDKYGK-----GDWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~-----g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      ..+||+|||++|+++|++||.     .+|..||+ +|++||..||++||++||.++.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Confidence            348999999999999999995     49999995 9999999999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.53  E-value=5e-15  Score=113.46  Aligned_cols=49  Identities=33%  Similarity=0.554  Sum_probs=43.4

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      ......+||+|||++||++|++|| ++|..||+ +|++||+.||++||++|
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHh
Confidence            344556999999999999999999 49999995 99999999999998755

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1e-14  Score=108.69  Aligned_cols=52  Identities=25%  Similarity=0.551  Sum_probs=46.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      .....+.||.|||++|.+++.+|+..   +|.+||.+|+|||..||++||..++.
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGKN---QWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCSS---CHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcC---CHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            34567799999999999999999964   39999999999999999999997664

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.52  E-value=1.1e-14  Score=102.33  Aligned_cols=46  Identities=22%  Similarity=0.434  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .+||+|||++|++++++||.++|..||+ +|++||..||++||++|+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence            4899999999999999999878999995 999999999999998775

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=2.3e-14  Score=103.58  Aligned_cols=49  Identities=18%  Similarity=0.396  Sum_probs=44.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      +..+||+|||++|++++++||.++|..||+ +|++||+.||++||++|+.
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence            345899999999999999999669999995 9999999999999987753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.49  E-value=4e-14  Score=100.00  Aligned_cols=47  Identities=26%  Similarity=0.439  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFI  169 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~  169 (297)
                      .+||+|||++|++++++||.++|..||+ +++  +||+.||++||.+|.+
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence            4899999999999999999779999995 999  9999999999998764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.47  E-value=8.2e-14  Score=103.54  Aligned_cols=52  Identities=27%  Similarity=0.424  Sum_probs=46.8

Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHHH
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFIR  170 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~r  170 (297)
                      +++..+||+|||++|+++|++||.++|..||+ +++  +||..||++||++|+..
T Consensus         7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCC
Confidence            44566999999999999999999779999995 999  99999999999988765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.46  E-value=9e-14  Score=102.31  Aligned_cols=49  Identities=29%  Similarity=0.508  Sum_probs=43.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV--TRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~--tRT~~Q~~sh~qky~~  169 (297)
                      +..+||+|||++|+++|++||.++|..||+ +++  +||+.||+.||+++.+
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence            445899999999999999999889999996 655  9999999999988753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=101.38  Aligned_cols=55  Identities=25%  Similarity=0.588  Sum_probs=48.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCC--ChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDA--SDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~--~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ....+.||.|||++|+++|++|+.++  ..+|.+||++|+|||..||++||..++.+
T Consensus         5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999754  36899999999999999999999876654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=102.06  Aligned_cols=48  Identities=23%  Similarity=0.546  Sum_probs=43.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      ++.+||+|||++|+++|++||.++|..||+ +|++||..||+.||++|+
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L   55 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL   55 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence            445899999999999999999669999995 999999999999988764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.41  E-value=2.9e-12  Score=115.95  Aligned_cols=136  Identities=11%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCC--CChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 022439            7 GSSSVWTKEQDKAFENALVSYPED--ASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGSMSH   84 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~--~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~~~~   84 (297)
                      .....||.|||++|..++.+||..  +...|..||.+|+|||..||++||..++..-  ++-. +....+..+   ..+.
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--ln~v-y~~ded~~L---i~d~   79 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--LEYV-YEVDKFGKL---VRDD   79 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--CCCE-ECBCTTSCB---CBCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--cccc-cccCcchhh---hhcc
Confidence            345789999999999999999873  3334999999999999999999999876541  2210 111111100   0000


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHH-h------------------------
Q 022439           85 AGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDK-Y------------------------  139 (297)
Q Consensus        85 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k-~------------------------  139 (297)
                      ...|-.+                    .  .-+..-...||.|||-+|...+++ |                        
T Consensus        80 ~Gn~iki--------------------s--~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~  137 (246)
T 1ign_A           80 DGNLIKT--------------------K--VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTA  137 (246)
T ss_dssp             TSCBCEE--------------------S--SCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC--------
T ss_pred             CCCceee--------------------e--ccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhh
Confidence            0000000                    0  000011237999999999999987 2                        


Q ss_pred             --------C------------------------CCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          140 --------G------------------------KGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       140 --------G------------------------~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                              |                        .+.|+.||+ ++++||...+|+||.|++.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~-~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          138 IARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAE-EHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             -----------------------CCCCCCCCCCTTHHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred             hhhhhcccCccccccCCcchhhhccccccCcchHHHHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence                    1                        136999995 999999999999999988775

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.40  E-value=2.6e-13  Score=103.83  Aligned_cols=58  Identities=22%  Similarity=0.436  Sum_probs=50.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh-hhhhhhcccC
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL-VDDVNRIESG   67 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l-~~dv~~IesG   67 (297)
                      ......||+|||++|++||++|+.    +|.+||++|++||..||++||..+ ++|+..+|++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~   73 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSD   73 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHHhcccccccccCC
Confidence            345678999999999999999993    499999999999999999999977 7776665544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.6e-13  Score=98.58  Aligned_cols=51  Identities=22%  Similarity=0.393  Sum_probs=45.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      +..+||.|||++|++++++||. +|..||+  +++||+.||++||++|+.....
T Consensus         8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~--~~gRt~~qcr~Rw~~~l~~~~~   58 (66)
T 2din_A            8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP--IIGRTAAQCLEHYEFLLDKAAQ   58 (66)
T ss_dssp             SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH--HHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc--ccCcCHHHHHHHHHHHhChHhc
Confidence            4458999999999999999999 9999995  5679999999999999887653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.37  E-value=5e-13  Score=100.89  Aligned_cols=49  Identities=22%  Similarity=0.517  Sum_probs=43.4

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      ...+||.|||++|+.+|.+||++   +|.+||+ +|++||..||++||+.+..
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHH
Confidence            45589999999999999999942   8999995 9999999999999987643

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.37  E-value=8.2e-13  Score=95.66  Aligned_cols=51  Identities=22%  Similarity=0.429  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ......||+|||++|.+++++|+.+   +|.+||++|+|||..||++||..++.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFG---NWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcC---cHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            4566789999999999999999964   39999999999999999999997664

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.06  E-value=4.8e-14  Score=110.09  Aligned_cols=51  Identities=31%  Similarity=0.434  Sum_probs=47.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      +.++||+|||++|++++.+||. +|..||+ +|++||+.||++||+.|+++++
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            4458999999999999999999 9999995 9999999999999999988764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=95.13  Aligned_cols=47  Identities=15%  Similarity=0.245  Sum_probs=42.3

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                      +++...+||+||+++|+++|.+||+ +|..|| .+|++||..||+.||.
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~Yy   54 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLYYY   54 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHH
Confidence            4556679999999999999999998 999999 5999999999999853

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.34  E-value=1.3e-12  Score=91.54  Aligned_cols=49  Identities=18%  Similarity=0.497  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ..+.||.|||++|.+++.+|+.+   +|.+||++|+|||..||++||..+++
T Consensus         2 ~~~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            2 GKTRWTREEDEKLKKLVEQNGTD---DWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999984   39999999999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.34  E-value=1.9e-12  Score=99.93  Aligned_cols=50  Identities=14%  Similarity=0.278  Sum_probs=45.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhh---hcCCCCHHHHHHHHHHHHHHHh
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRN---FVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~---~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      +||+|||++|++++++||.|+|+.|++.   ++++||..||+++|+++++...
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999999963   3899999999999999887553

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.8e-12  Score=95.32  Aligned_cols=59  Identities=25%  Similarity=0.613  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccC
Q 022439            4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESG   67 (297)
Q Consensus         4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG   67 (297)
                      +.....+.||.|||++|.+++..|+.    +|.+||+ ++|||..||++||..++.+...+++|
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            44566789999999999999999997    3999999 88999999999999999987777755

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=2.4e-12  Score=92.90  Aligned_cols=52  Identities=13%  Similarity=0.414  Sum_probs=46.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      .....+.||.|||++|.+++.+|+..   +|.+||.+|+|||..||++||..++.
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQ---DWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTT---CHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            34567899999999999999999964   39999999999999999999997765

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.33  E-value=1.8e-12  Score=91.02  Aligned_cols=49  Identities=22%  Similarity=0.489  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ..+.||.|||++|.+++.+|+..   +|.+||.+|+|||..||++||..++.
T Consensus         2 ~k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            2 IKGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999974   39999999999999999999997664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.32  E-value=3.4e-12  Score=91.88  Aligned_cols=48  Identities=21%  Similarity=0.336  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLV   58 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~   58 (297)
                      ..+.||.|||++|.++|++|+.+.   |.+||++|+ |||..||++||..+.
T Consensus         8 ~~~~WT~eED~~L~~~v~~~G~~~---W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            8 FDENWGADEELLLIDACETLGLGN---WADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTTTTC---HHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999653   999999999 999999999998653

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=98.69  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                      +..+.++||+|||++|++++++||. +|..||+ ++ +||+.||++||+
T Consensus        19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~   64 (73)
T 2llk_A           19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR   64 (73)
T ss_dssp             CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence            3445569999999999999999999 8999996 88 999999999986

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.29  E-value=4.6e-12  Score=101.84  Aligned_cols=54  Identities=19%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +++..+||+|||++|+++|++||.|+|+.|++.+   +++||..||+++|+++++..
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4566699999999999999999999999999643   38999999999999887654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.29  E-value=6.2e-12  Score=103.43  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      .+++..+||+|||++|+++|++||.|+|..|++.+   +.+||..||+++|+++++...
T Consensus        13 ~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           13 QRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            35566699999999999999999999999999743   489999999999999887643

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.28  E-value=5.7e-12  Score=92.62  Aligned_cols=52  Identities=19%  Similarity=0.456  Sum_probs=44.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVD   59 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~   59 (297)
                      +......||+|||++|.++|++|+.+.   |.+||++++  |||..||++||..|+.
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCc---hHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            345678899999999999999999754   999999977  9999999999998765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.27  E-value=1.1e-11  Score=102.11  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=48.8

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHHh
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      .+++..+||+|||++|+++|++||.|+|..|++.+   +.+||..||+++|+++++...
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34566699999999999999999999999999743   389999999999999887654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.26  E-value=9.7e-12  Score=93.05  Aligned_cols=53  Identities=23%  Similarity=0.454  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      +.....+.||.|||++|.+++..|+..    |.+||.+|+|||..||+.||..++..
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            445677899999999999999999984    99999999999999999999987765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=99.26  E-value=2.5e-12  Score=115.46  Aligned_cols=51  Identities=29%  Similarity=0.518  Sum_probs=46.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      ...+||+||+++|++||.+||+ +|..||+ +|+|||..||++||++|++|++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence            4458999999999999999999 9999996 9999999999999999887754

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.25  E-value=9.9e-12  Score=87.63  Aligned_cols=48  Identities=21%  Similarity=0.449  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVD   59 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~   59 (297)
                      .+.||+|||++|..++++|+.+.   |.+||.+|+  |||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCC---HHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            57899999999999999999753   999999999  9999999999998763

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.21  E-value=1.8e-11  Score=96.42  Aligned_cols=49  Identities=29%  Similarity=0.567  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          123 AWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      +||.|||++|+.+|.+||.+   +|.+||+ +|++||..||++||++++....
T Consensus        10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A           10 PWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999843   7999995 9999999999999999876653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.21  E-value=1.2e-11  Score=98.36  Aligned_cols=46  Identities=22%  Similarity=0.420  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      ++||+|||++|+.+|++||.++|..||+ +|++||..||+.||++|+
T Consensus         5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence            4899999999999999999878999995 999999999999988764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.19  E-value=2e-11  Score=100.37  Aligned_cols=86  Identities=14%  Similarity=0.249  Sum_probs=69.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhhhhhcccCCCCCCCCCCCCCCC
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDDVNRIESGCVPLPSYNSSSDGS   81 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~dv~~IesG~v~lp~y~~~~~~~   81 (297)
                      ....+.||.|||++|..++++|+.+.   |.+|+..+    +|||..||++||..++.... |+      |.        
T Consensus        14 rr~r~~WT~EEd~~L~~gV~k~G~G~---W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~-~~------p~--------   75 (121)
T 2juh_A           14 RRIRRPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS-IA------PQ--------   75 (121)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHGGGC---HHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH-TC------ST--------
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHhccccCCCCHHHHHHHHHHHHhhhc-cC------Cc--------
Confidence            44567899999999999999999854   99999984    89999999999998876311 10      00        


Q ss_pred             CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCCCchhh
Q 022439           82 MSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRS  146 (297)
Q Consensus        82 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~  146 (297)
                                                          .+++.+|++||+.+++++...+|+ +|.+
T Consensus        76 ------------------------------------~krg~~~p~e~~~rv~~~h~~~gn-~~~~  103 (121)
T 2juh_A           76 ------------------------------------QRRGEPVPQDLLDRVLAAHAYWSQ-QQGK  103 (121)
T ss_dssp             ------------------------------------TCCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred             ------------------------------------ccCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence                                                112348999999999999999998 8876

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.18  E-value=4.1e-11  Score=88.83  Aligned_cols=53  Identities=19%  Similarity=0.379  Sum_probs=47.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVDD   60 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~d   60 (297)
                      .....+.||.|||.+|..++++|+.+.   |.+||.+|+  |||..||++||..++..
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCSSC---HHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCc---HHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            345678899999999999999999753   999999999  99999999999987763

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=5.7e-11  Score=86.31  Aligned_cols=50  Identities=22%  Similarity=0.405  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      .+......||+||+++|++++++||.+    |.+||++|++||..||+++|..-
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~----w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPKN----FGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTTC----HHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCCC----HHHHHHHcCCCCHHHHHHHHHHh
Confidence            345667899999999999999999974    99999999999999999999753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.15  E-value=3.4e-11  Score=96.39  Aligned_cols=45  Identities=31%  Similarity=0.563  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .||+|||++|+.+|++||.++|..||. +|++||..||+.||.+|+
T Consensus         3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            3 KFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             SSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence            799999999999999999879999995 999999999999988764

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.14  E-value=3.9e-11  Score=98.77  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhccCCCCCCCCccccc
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT  187 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~~k~~rr~si~d~t  187 (297)
                      ++++||+|||++|++++++||. +|..||+ +|++||..||+.||++|+.   ...++...+.-+|..
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~---p~~~~~~WT~eEd~~   72 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA---PSISHTPWTAEEDAL   72 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS---TTSCCSCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc---cccccccCCHHHHHH
Confidence            4458999999999999999999 9999995 9999999999999887753   222333444444443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.13  E-value=5.1e-11  Score=98.62  Aligned_cols=46  Identities=24%  Similarity=0.378  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~  169 (297)
                      +||+|||++|+.+|++||.++|..||. +|++||..||+.||++|+.
T Consensus         4 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            4 PFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD   49 (131)
T ss_dssp             SCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence            899999999999999999779999995 9999999999999987753

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=9.6e-11  Score=96.46  Aligned_cols=52  Identities=12%  Similarity=0.221  Sum_probs=45.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~d   60 (297)
                      ....+.||.|||++|..++++|+.+.   |.+|+..+    ++||..||++||..++..
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTGR---WRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSSC---HHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCC---hHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34567899999999999999999864   99999974    899999999999988753

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.10  E-value=7.4e-11  Score=86.02  Aligned_cols=49  Identities=20%  Similarity=0.383  Sum_probs=42.7

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhh--hhcCCCCHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISR--NFVVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar--~~v~tRT~~Q~~sh~qky~~  169 (297)
                      ++.+||+||++.|+++|++||+ +|..|+.  .|+.+||...++++|+.+.+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            3448999999999999999999 9999993  18899999999999876543

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.08  E-value=9.1e-11  Score=88.47  Aligned_cols=52  Identities=21%  Similarity=0.409  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            4 DEVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         4 ~e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      |.....+.||+|||++|.+++++|+..    |.+||++| |||..||++||..|.++
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~k----W~~IA~~l-gRt~~q~knRw~~L~~~   69 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGND----WATIGAAL-GRSASSVKDRCRLMKDT   69 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSSC----HHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence            455677899999999999999999975    99999999 99999999999977653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=2.9e-10  Score=83.17  Aligned_cols=44  Identities=27%  Similarity=0.565  Sum_probs=40.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                      +...||+||+++|+++|.+||+ +|..|++++|++||..||..+|
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY   51 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence            3458999999999999999999 9999996579999999999885

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=99.05  E-value=1.1e-09  Score=105.00  Aligned_cols=132  Identities=23%  Similarity=0.339  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-CCCHHHHHHHHHHhhhhh----------hhcccCCCC--------
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-GKSLEEIKQHYELLVDDV----------NRIESGCVP--------   70 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-GRT~~Qcr~rY~~l~~dv----------~~IesG~v~--------   70 (297)
                      ..||+.|...|++|+++||.+.   .+.||..|. |||.+||+++++.+.+-.          ..||.|...        
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d---~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~  200 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNS---IQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ  200 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTC---HHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhH---HHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999965   999999998 999999998777664322          233433110        


Q ss_pred             ------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCcchhhhccCCCCCHHHHHHHHHHHHHhCC---
Q 022439           71 ------LPSYNSSSDGSMSHAGDEGTSNGKKGGHYGHFNSESNGNKSSRSDQERRKGIAWTEDEHRLFLLGLDKYGK---  141 (297)
Q Consensus        71 ------lp~y~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~kk~~~WT~eEd~~ll~~l~k~G~---  141 (297)
                            +..|...-...          ....+.                   ...++..||+|||+.||.+|.+||-   
T Consensus       201 ~~L~~Ki~~y~~P~~~L----------~i~y~~-------------------~~~k~k~yteeEDRfLL~~l~k~G~~~~  251 (374)
T 2y9y_A          201 EALRRKLSEYKNPFFDL----------KLKHPP-------------------SSNNKRTYSEEEDRFILLMLFKYGLDRD  251 (374)
T ss_dssp             HHHHHHHTTCSSHHHHC----------CCSSCC-------------------CCSSCCCSCHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHccCCHHHc----------eeccCC-------------------CCCCCCccCHHHHHHHHHHHHHhccCCC
Confidence                  11111100000          000000                   0013457999999999999999999   


Q ss_pred             Cchhhh-----------hhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          142 GDWRSI-----------SRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       142 g~W~~I-----------ar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      |.|..|           ..+|+.+||+.+|..|+.-++.-+.+
T Consensus       252 g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeK  294 (374)
T 2y9y_A          252 DVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEK  294 (374)
T ss_dssp             CCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            899999           45679999999999998876665543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.03  E-value=1.5e-10  Score=87.17  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=40.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CchhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGK---GDWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~---g~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      .||.||+++|+.||..|++   ++|.+||. +|++||..||+.||+.+
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence            7999999999999999997   47999995 99999999999997644

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.02  E-value=3.5e-10  Score=85.02  Aligned_cols=44  Identities=25%  Similarity=0.505  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      ..||.||+++|+.+|.+|+.|   +|.+||. ++ +||..||++||+++
T Consensus         9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L   55 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   55 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence            489999999999999999854   7999995 77 89999999998876

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.99  E-value=6.3e-10  Score=83.09  Aligned_cols=44  Identities=30%  Similarity=0.494  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                      ...||+||.++|+++|.+||+ +|..|++++|++||..||..+|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            348999999999999999999 99999965799999999999864

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.46  E-value=1e-10  Score=91.12  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ....+.||.|||.+|..++..||.+    |..||.+|+|||..||++||..++..
T Consensus        13 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           13 NLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            4456789999999999999999874    99999999999999999999977654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=98.86  E-value=1e-09  Score=99.37  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCc-----hhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGD-----WRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~-----W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      ..+||+|||++||+++++||..+     |..||+ ++++||++||++||..|+.+.
T Consensus         8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~   62 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR   62 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence            34899999999999999999832     999996 999999999999999988664

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=98.83  E-value=4.4e-08  Score=86.41  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh--CCCCCHHHHHHHHHHhhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~--VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ....||+.|...|.+|+.+||.- .+||+.|++.  |.+||.+++++.|..+.+.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            34679999999999999999952 3579999865  6799999999988876543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.83  E-value=4.8e-09  Score=80.87  Aligned_cols=48  Identities=13%  Similarity=0.306  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh----CCCCCHHHHHHHHHHhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAAD----VPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~----VpGRT~~Qcr~rY~~l~~d   60 (297)
                      +.||.|||++|..++++||.+.   |.+|+..    |+|||..||++||..++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~---W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC---cHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            4799999999999999999864   9999996    8999999999999988753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.81  E-value=6.2e-10  Score=83.55  Aligned_cols=44  Identities=30%  Similarity=0.608  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                      +..||.||+++|+.||.+|+++   +|.+||. .|++||..+|+.||+
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence            3489999999999999999986   8999995 999999999999976

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.6e-08  Score=73.84  Aligned_cols=48  Identities=25%  Similarity=0.455  Sum_probs=42.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhh-hCCCCCHHHHHHHHHHh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAA-DVPGKSLEEIKQHYELL   57 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~-~VpGRT~~Qcr~rY~~l   57 (297)
                      ......||+||.++|+++|++|+.+    |.+||+ +|++||..||+++|..-
T Consensus         6 ~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHhcc
Confidence            3445689999999999999999997    999998 69999999999999743

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.66  E-value=4.8e-08  Score=72.81  Aligned_cols=47  Identities=30%  Similarity=0.469  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhh-hCCCCCHHHHHHHHHHh
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAA-DVPGKSLEEIKQHYELL   57 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~-~VpGRT~~Qcr~rY~~l   57 (297)
                      .....||+||.++|+++|++|+.+    |..|++ +|++||..||.++|..-
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY~w   53 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   53 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHHhh
Confidence            455689999999999999999997    999999 69999999999999843

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.66  E-value=3.8e-08  Score=78.99  Aligned_cols=53  Identities=11%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC----CCCCHHHHHHHHHHhhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADV----PGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V----pGRT~~Qcr~rY~~l~~d   60 (297)
                      .....+.||.|||++|..+|++|+.+.   |.+|+..+    ++||..||++||..++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~---W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGR---WRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSS---HHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC---hHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            345677999999999999999999864   99999965    899999999999988753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.63  E-value=4.4e-08  Score=77.08  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             hhccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHH
Q 022439          117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHA  164 (297)
Q Consensus       117 ~~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~  164 (297)
                      .+.....||+||+++|++++.+||+ +|..|+ .++++||..||..+|
T Consensus        39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY   84 (94)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence            3445568999999999999999999 999999 599999999999985

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.62  E-value=9.6e-08  Score=70.08  Aligned_cols=53  Identities=32%  Similarity=0.442  Sum_probs=44.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCC--chhhhhhhh--cCCCCHHHHHHHHHHHHHHHhc
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKG--DWRSISRNF--VVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g--~W~~Iar~~--v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      .+..||+|.|+.|++||+++|..  .|+.|-+ +  |++.|..||+||.|||+..+.+
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            44589999999999999999952  2889974 5  4578999999999999998864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.61  E-value=3.2e-08  Score=88.94  Aligned_cols=49  Identities=20%  Similarity=0.349  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ....||.||+++|+.||++|+.+    |..||..|++||..||+.+|......
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999986    99999999999999999999866543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.58  E-value=1.1e-07  Score=69.27  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHh---hhCCCCCHHHHHHHHHHhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIA---ADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA---~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ......||+|||+.|.+.|.+|+..    |..|+   .++++||..+++++|..|..
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            3466789999999999999999984    99999   57889999999999998875

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.49  E-value=1.6e-07  Score=73.80  Aligned_cols=45  Identities=20%  Similarity=0.442  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ...||+||..+|++++..||.+    |.+||++|++||..||.++|..-
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhcc
Confidence            4579999999999999999997    99999999999999999999743

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.05  E-value=4.3e-06  Score=60.24  Aligned_cols=47  Identities=15%  Similarity=0.305  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKY--------GKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~--------G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .+||+|||++|++.|.+|        |+.-|+.|++..++.+|-.+|+.||.|++
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            489999999999999999        65579999954799999999999987754

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.99  E-value=1.3e-05  Score=62.89  Aligned_cols=49  Identities=16%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhC-----CCCCHHHHHHHHHHhhhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADV-----PGKSLEEIKQHYELLVDDVN   62 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~V-----pGRT~~Qcr~rY~~l~~dv~   62 (297)
                      ..||+||+..|.+++.+|+..    |-.|+..+     ++||++++++||..+...+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdlR----W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~   84 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLA   84 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC----HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCC----eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            689999999999999999984    99999999     48999999999998776553

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.98  E-value=5.8e-06  Score=81.73  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ....||.||..+|+.+|.+|+.+    |..||..|++||..||+.+|.....
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999986    9999999999999999999976543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.97  E-value=1.4e-05  Score=62.74  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhc-----CCCCHHHHHHHHHHHHHHHhc
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFV-----VTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v-----~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      .+||.||+..|++++++||. +|..|+. .+     ++||..++++|+....+++..
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~~   85 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999 9999996 66     589999999998776666653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.89  E-value=3e-05  Score=60.25  Aligned_cols=51  Identities=16%  Similarity=0.324  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ..-.||+|||..+..++++-+. +.+.|..||+.|.+||..||.+||+.|..
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            3447999999999999999876 34569999999999999999999997765

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=97.80  E-value=0.0002  Score=66.03  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh--CCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~--VpGRT~~Qcr~rY~~l~   58 (297)
                      .+.||..|...|.+++.+|+.- .+||+.|+..  |..|+.+++++-|..|.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li   53 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMM   53 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence            4679999999999999999973 3589999654  56899999888887653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=97.79  E-value=4.8e-05  Score=54.70  Aligned_cols=50  Identities=14%  Similarity=0.264  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-----CChhHHHHhh-hCCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPED-----ASDRWEKIAA-DVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~-----~~~rWekIA~-~VpGRT~~Qcr~rY~~l~   58 (297)
                      +..||.|||++|.+.|+.|...     .+.-|..||+ .++++|-..|++||.+.+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999432     4568999999 899999999999998654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.92  E-value=4.2e-06  Score=61.74  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ..-.||+|||..+..++++-+.. ++.|..||..| +||..||.+||+.|..
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            34469999999998888887763 36799999999 8999999999997764

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.72  E-value=6.4e-05  Score=58.44  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCC--CchhhhhhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGK--GDWRSISRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~--g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      +-.-||.|||+.+|...++-|.  ..|..||+ .+.+||+.||++|+|.+++-+.
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHHHHHH
Confidence            3457999999999999999985  37999996 8999999999999988766554

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.55  E-value=2e-05  Score=58.13  Aligned_cols=47  Identities=26%  Similarity=0.487  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--chhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG--DWRSISRNFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g--~W~~Iar~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      .-||.|||+.+|...++-|..  .|..||+ .+ +||+.||.+|++.++.-
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            379999999999999998863  7999996 67 89999999997765543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.31  E-value=0.00053  Score=53.62  Aligned_cols=50  Identities=16%  Similarity=0.315  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC-----CCCHHHHHHHHHHhhhhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVP-----GKSLEEIKQHYELLVDDVNR   63 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp-----GRT~~Qcr~rY~~l~~dv~~   63 (297)
                      ..||+||...|-.++..|+..    |-.|+....     .||++|+++||..+...+..
T Consensus        31 ~~WT~eETd~LfdLc~~fdlR----w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLR----FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC----HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCC----eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            579999999999999999984    999999985     69999999999987766543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.18  E-value=0.00049  Score=52.39  Aligned_cols=57  Identities=11%  Similarity=0.359  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHC------CCCCChhHHHHhhhCC----CCCHHHHHHHHHHhhhhhhhcc
Q 022439            9 SSVWTKEQDKAFENALVSY------PEDASDRWEKIAADVP----GKSLEEIKQHYELLVDDVNRIE   65 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~------p~~~~~rWekIA~~Vp----GRT~~Qcr~rY~~l~~dv~~Ie   65 (297)
                      ...||.+|..+|..+....      +......|+.||..|-    .||++||+.+|+.|...-+.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k   70 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK   70 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999988653      1224458999999976    6999999999999988755443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.83  E-value=0.0014  Score=49.75  Aligned_cols=50  Identities=18%  Similarity=0.392  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHH----hCCC-----chhhhhhhhcC----CCCHHHHHHHHHHHHHHHh
Q 022439          122 IAWTEDEHRLFLLGLDK----YGKG-----DWRSISRNFVV----TRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k----~G~g-----~W~~Iar~~v~----tRT~~Q~~sh~qky~~r~~  172 (297)
                      ..||.+|-.+||++...    |..+     .|..||. .+.    .||+.||+..|.++...-.
T Consensus         5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999865    2221     6999995 443    7999999999988766654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.76  E-value=0.0024  Score=59.77  Aligned_cols=48  Identities=29%  Similarity=0.548  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      .||..+...|+.|+.+||+.+|..||. .|.++|..+|+.+++-|+.+-
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence            699999999999999999999999995 999999999998888777665

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.70  E-value=0.0038  Score=48.79  Aligned_cols=52  Identities=13%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhc----CCCCHHHHHHHHHHHHHHHhcc
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFV----VTRTPTQVASHAQKYFIRLNSM  174 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v----~tRT~~Q~~sh~qky~~r~~~~  174 (297)
                      ..||.||...|++++++|+. +|--|+..|-    ..||..+++.|+....+++...
T Consensus        31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999 9999985343    3799999999987777776543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.98  E-value=0.0082  Score=52.38  Aligned_cols=52  Identities=17%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHhC--CCchhhhhhh-hcCCCCHHHHHHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYG--KGDWRSISRN-FVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G--~g~W~~Iar~-~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +-..||+.|-+.|+.++.+||  .++|..|+++ -+..||..+++..+..+..+.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            334799999999999999999  5799999742 267999999998877766553

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.45  E-value=0.038  Score=40.20  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhhhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~~dv   61 (297)
                      ...+-.||.|.-+.|..||..++.+ .--+.+|.+.+.  |.|..+|+-|.+++.-.+
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~-~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVE-RAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTT-TCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCC-CCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            4456789999999999999999843 234788877754  899999998887665443

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=91.67  E-value=0.24  Score=47.46  Aligned_cols=48  Identities=25%  Similarity=0.482  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcC-CCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~-tRT~~Q~~sh~qky~~r~  171 (297)
                      .||.-+=..|+.|+.+||+.+...||. .|. ++|..+|+.+++-|+.|-
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry  173 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI  173 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence            699999999999999999999999995 887 999999998777666554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=80.81  E-value=3.5  Score=37.74  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHHHhC--CCchhhhhh-hhcCCCCHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYG--KGDWRSISR-NFVVTRTPTQVASHAQ  165 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G--~g~W~~Iar-~~v~tRT~~Q~~sh~q  165 (297)
                      .||+.|-+.|+.+|.+||  .++|..|++ .-+..|+...++.-++
T Consensus         5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~   50 (270)
T 2xb0_X            5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD   50 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence            799999999999999999  368999942 2467888887775444

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=80.62  E-value=5.4  Score=30.15  Aligned_cols=49  Identities=33%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-chh--------------hhhh----hhcCCCCHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG-DWR--------------SISR----NFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g-~W~--------------~Iar----~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      .-|+++=+..|++||..|..- .++              .|+.    ..-..||..||.||-|-+-++
T Consensus         7 ~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~   74 (82)
T 2hzd_A            7 GVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR   74 (82)
T ss_dssp             CCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence            479999999999999998742 222              1221    134679999999997754333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-18
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-06
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	7e-18
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	1e-05
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-17
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	3e-16
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	7e-06
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	7e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-06
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-04
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	6e-09
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-05
d1ofcx1	52	a.4.1.3 (X:799-850) SANT domain of the nucleosome	3e-05
d1ofcx1	52	a.4.1.3 (X:799-850) SANT domain of the nucleosome	0.001
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-04

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 76.1 bits (187), Expect = 1e-18
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCV 69
            W+ +++KAFE AL  Y +D  DRW  +A  V G++ EE+K+HYE+LV+D+  IESG V
Sbjct: 2  RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 61

Query: 70 P 70
          P
Sbjct: 62 P 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 40.3 bits (94), Expect = 9e-06
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 121 GIAWTEDEHRLFLLGLDKYGKGDWRSISR--NFVVTRTPTQVASH 163
           G  W+  E++ F   L  Y K      +     V  RTP +V  H
Sbjct: 1   GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH 45

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 7e-18
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCV 69
          WT+E       ++V +P     RWEKIA ++ G+S+ ++    + L D V     G V
Sbjct: 4  WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMV 59

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 124 WTEDEHRLFLLGLDKYGKGD---WRSISRNFVVTRTPTQVASHAQK 166
           WTE++       + K+  G    W  I+    + R+ T V + A++
Sbjct: 4   WTEEDLSQLTRSMVKFPGGTPGRWEKIAH--ELGRSVTDVTTKAKQ 47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 117 ERRKGIAWTEDEHRLFLLGLDKYGKGDWR--SISRNFVV-TRTPTQVASHAQKYFIRLNS 173
           +++  + WT + H  FL  +D  G        I     V   T   VASH QK+ + L  
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62

Query: 174 M 174
           +
Sbjct: 63  V 63

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRR 180
           W+  E  LF   L+KYGK D+  I ++F+  ++ T +  +   Y  +       ++R
Sbjct: 4   WSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY--YMWKTTDRYVQQKR 57

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (95), Expect = 7e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAAD-VPGKSLEEIKQHY 54
          W+  +   FE AL  Y +D    +  I  D +P KSL  I ++Y
Sbjct: 4  WSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYY 43

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172
           ++    WT +E  L +  + KYG+ D+++IS   +  ++  QV +    Y  R N
Sbjct: 2   QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 54

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 8  SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
           ++ WT E+      A+  Y  D    ++ I+  +  KS+ ++K  +
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFF 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 9e-11
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 116 QERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMN 175
           ++R+    W+E E   F     ++ K ++  I+  F+  +T  +   +   Y++   + N
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLY---YYLTKKNEN 66

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 8/43 (18%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
          W++++ + F    + +P++    +  IA+ +  K++ E   +Y
Sbjct: 20 WSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYY 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 23/46 (50%), Positives = 28/46 (60%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL 57
          WT+ Q K  E AL  YP  +SD W+KIA  VP KS E+    Y+LL
Sbjct: 15 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 111 SSRSDQERRKGIAWTEDEHRLFLLGLDKYGK---GDWRSISRNFVVTRTPTQVASH 163
           S R ++ R     WT+++ +L  L L +Y +     W  I+R  V +++     + 
Sbjct: 2   SLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIAR 56

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSS 182
           WT +E  LF  GL K+G+  W  IS+  + +RT  QV S+A++YF        D+   +
Sbjct: 5   WTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 9  SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHY 54
          S  WT E+ + FE  L  +       W KI+  +  +++ ++K + 
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYA 43

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 6e-09
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 124 WTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 168
           WT  E    L  +   G G+W+ ++   + T+T  +   H  KYF
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVV-TRTPTQV 160
           ++  AW  +E +    G+ KYG+G+W  I  ++    RT   +
Sbjct: 1   KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML 42

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 119 RKGIAWTEDEHRLFLLGLDKYGKGDWRSISRN-FVVTRTPTQV 160
           +K   WT +E      G+ KYG+G+W +IS+N   V RT   +
Sbjct: 1   KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI 42

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 12 WTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIE 65
          WTK     F  A   Y     D  + IA DV GK+ EE+ ++  +  +    ++
Sbjct: 2  WTKRDFNQFIKANEKY---GRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQ 52

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLN 172
           AWT+ +   F+   +KYG+ D  +I+   V  +TP +V  +   ++ R  
Sbjct: 1   AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERCT 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
            WT +E       +++ G  DW+ I+  ++  RT  Q     QK 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKV 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.79
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.62
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.62
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.56
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.56
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.42
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.38
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.38
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.36
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.33
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.33
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.26
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.26
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.23
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.22
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	99.21
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.19
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.16
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.13
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.1
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.02
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.01
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.8
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.72
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.69
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.42
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	98.11
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.39
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.18
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.14
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	97.09
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.61
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.94
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	94.09
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.53

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.79  E-value=6.7e-20  Score=132.92  Aligned_cols=63  Identities=48%  Similarity=0.920  Sum_probs=60.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhhhcccCCCCC
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVNRIESGCVPL   71 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~~IesG~v~l   71 (297)
                      ++.||.|||++|++||++|+.+.+++|.+||.+|+|||..||++||+.|++||+.||+|.+++
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            468999999999999999999988999999999999999999999999999999999998875

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-16  Score=108.80  Aligned_cols=45  Identities=29%  Similarity=0.620  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .||+|||++|+++|++||.++|..||+ +|++||+.||++||++||
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~-~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHH-HcCCCCHHHHHHHHHHhC
Confidence            599999999999999999889999995 999999999999999997

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.5e-16  Score=111.76  Aligned_cols=51  Identities=31%  Similarity=0.676  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDV   61 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv   61 (297)
                      .+||+||+++|++||++||.++++||++||++| |||.+||+.||+.|.+++
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~   52 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   52 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999 899999999999998865

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.3e-15  Score=108.05  Aligned_cols=51  Identities=39%  Similarity=0.686  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhccC
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMN  175 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~~~  175 (297)
                      .||+|||++|+++|.+||+ +|..||+ +|++||+.||++||++|+++.....
T Consensus         4 ~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           4 KWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCHHHHHHHHHHHHHhcc-hHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999998 9999995 9999999999999999998876544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.3e-15  Score=106.72  Aligned_cols=52  Identities=44%  Similarity=0.706  Sum_probs=48.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ......||.|||++|++||..|+.+++++|.+||++|||||..||++||+.|
T Consensus         9 ~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           9 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            4456789999999999999999999889999999999999999999999865

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.6e-15  Score=103.83  Aligned_cols=46  Identities=22%  Similarity=0.434  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      ++||.|||++|++++++||.++|..||+ ++++||+.||++||++|+
T Consensus         4 g~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qc~~Rw~~~L   49 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            4899999999999999999879999996 999999999999998874

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.7e-15  Score=101.75  Aligned_cols=45  Identities=24%  Similarity=0.587  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .+||+|||++|++++++||. +|..||+ +|++||..||++||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh-HHHHHHh-HcCCCCHHHHHHHHHHHc
Confidence            38999999999999999999 9999996 999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=6.5e-15  Score=101.62  Aligned_cols=45  Identities=27%  Similarity=0.523  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF  168 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~  168 (297)
                      .||.|||++|+.+|++||.++|..||. +|++||+.||+.||++|+
T Consensus         3 ~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           3 RWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCHHHHHHHHHhhC
Confidence            799999999999999999889999995 999999999999999886

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.4e-14  Score=97.75  Aligned_cols=48  Identities=25%  Similarity=0.487  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCchhhhhhhh-cCCCCHHHHHHHHHHHH
Q 022439          121 GIAWTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQVASHAQKYF  168 (297)
Q Consensus       121 ~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~-v~tRT~~Q~~sh~qky~  168 (297)
                      ..+||+|||++|+++|++||.|+|..|++.+ +.+||+.||+.+|++|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            3489999999999999999998999999633 46999999999998753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.9e-14  Score=97.40  Aligned_cols=48  Identities=31%  Similarity=0.632  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhh-cCCCCHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNF-VVTRTPTQVASHAQKYFI  169 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~-v~tRT~~Q~~sh~qky~~  169 (297)
                      .+||+|||++|+++|++||.++|..|++.+ +.+||+.||+.+|++|.+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            489999999999999999988999999633 569999999999988654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.42  E-value=1.4e-13  Score=99.01  Aligned_cols=49  Identities=29%  Similarity=0.546  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      .+||.|||++|+++|++||.+   +|.+||. +|++||..||++||+++...+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~-~l~gRt~~qc~~r~~~L~~di   53 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDI   53 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHH-HcCCCCHHHHHHHHHHHHHHh
Confidence            489999999999999999986   4999995 999999999999997665444

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=95.74  Aligned_cols=46  Identities=24%  Similarity=0.563  Sum_probs=41.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHH
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQK  166 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qk  166 (297)
                      ...+||.|||++|+++|.+||.+   +|..||+ +|++||..||+.||+.
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~-~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKL   59 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHH-HcCCCCHHHHHHHHHH
Confidence            44589999999999999999986   5999995 9999999999999864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.8e-13  Score=93.21  Aligned_cols=48  Identities=19%  Similarity=0.504  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ++.||.|||++|.++|++|+.+.   |.+||.+|+|||..||++||..+++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~---W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDD---WKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSC---HHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            36799999999999999999764   9999999999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=3.6e-14  Score=108.50  Aligned_cols=52  Identities=15%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCC--CCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPE--DASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~--~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ++.||.|||++|.+++.+||.  .....|.+||.+|||||..||++||..++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p   54 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   54 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            368999999999999999985  3446799999999999999999999976653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.4e-13  Score=91.20  Aligned_cols=45  Identities=24%  Similarity=0.475  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELL   57 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l   57 (297)
                      ..||.|||.+|.++|++|+.+.   |.+||++|++||..||++||.++
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~n---W~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGN---WQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTC---HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCcc---HHHHHHHcCCCCHHHHHHHHHHh
Confidence            3599999999999999999764   99999999999999999999864

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=4.3e-13  Score=93.11  Aligned_cols=49  Identities=20%  Similarity=0.453  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      .++.||.|||++|.+++++|+.+.   |..||+.|++||..||++||..+++
T Consensus         2 ~rg~WT~eED~~L~~~v~~~g~~~---W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           2 IKGPWTKEEDQRLIKLVQKYGPKR---WSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCTTC---HHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            367899999999999999998754   9999999999999999999997654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-13  Score=97.59  Aligned_cols=47  Identities=30%  Similarity=0.538  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIR  170 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r  170 (297)
                      ..||+||+.+|+++|.+||+ +|..||+ +|++||..||++||.+|.++
T Consensus         6 ~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           6 ARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             SSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCc-hHHHHHH-HcCCCCHHHHHHHHHHHHhh
Confidence            37999999999999999998 9999995 99999999999998876543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.4e-13  Score=99.12  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=42.2

Q ss_pred             hccCCCCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHH
Q 022439          118 RRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQK  166 (297)
Q Consensus       118 ~kk~~~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qk  166 (297)
                      ++...+||+||+++|+++|.+||+ +|..||+ +|++||..||++||..
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~-~~~~rt~~q~~~~yy~   60 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLYYYL   60 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHH-HTTTSCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHH-HcCCCCHHHHHHHHHH
Confidence            445568999999999999999998 9999995 9999999999999643

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.2e-12  Score=86.88  Aligned_cols=46  Identities=28%  Similarity=0.570  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~   58 (297)
                      .+.||+|||++|..++.+||..    |.+||.+|||||..||+.||..++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~----W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNR----WAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC----HHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhhH----HHHHHhHcCCCCHHHHHHHHHHHc
Confidence            3689999999999999999974    999999999999999999998764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.26  E-value=4.9e-12  Score=91.32  Aligned_cols=56  Identities=30%  Similarity=0.447  Sum_probs=45.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCch--hhhhhhh-cCCCCHHHHHHHHHHHHHHHhcc
Q 022439          119 RKGIAWTEDEHRLFLLGLDKYGKGDW--RSISRNF-VVTRTPTQVASHAQKYFIRLNSM  174 (297)
Q Consensus       119 kk~~~WT~eEd~~ll~~l~k~G~g~W--~~Iar~~-v~tRT~~Q~~sh~qky~~r~~~~  174 (297)
                      +.+..||+|||+.|++||+.||.++|  +.|...+ |+++|..||+||+||||.++.+.
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34458999999999999999998444  5676422 88999999999999999998643

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.6e-12  Score=90.28  Aligned_cols=47  Identities=21%  Similarity=0.468  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~d   60 (297)
                      ..||.|||.+|..+|.+|+.+    |.+||++|++||..||+.||..++..
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRR----WTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcch----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999964    99999999999999999999977654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.22  E-value=1.1e-11  Score=93.78  Aligned_cols=49  Identities=14%  Similarity=0.283  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhh---cCCCCHHHHHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNF---VVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~---v~tRT~~Q~~sh~qky~~r~  171 (297)
                      +||.|||++|+.+|++||.|+|..|++.+   +.+||+.||+.+|++|++..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999643   68999999999999987653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=1.3e-11  Score=87.01  Aligned_cols=42  Identities=31%  Similarity=0.566  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~q  165 (297)
                      .||+||.++|++||.+||+ +|..|++.+|++||..||.++|.
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY   44 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYY   44 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHH
Confidence            6999999999999999999 99999976789999999999964

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=4.7e-12  Score=96.55  Aligned_cols=49  Identities=18%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-----chhhhhhhhcCCCCHHHHHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG-----DWRSISRNFVVTRTPTQVASHAQKYFIRL  171 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g-----~W~~Iar~~v~tRT~~Q~~sh~qky~~r~  171 (297)
                      ..||+|||++|++++++||..     +|..||+ +|++||..||++||++|+...
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~-~lpgRt~~qcr~Rw~~~L~p~   55 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR   55 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHH-HcCCCCHHHHHHHHHHHcCcc
Confidence            379999999999999999973     3999995 999999999999999887654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.16  E-value=1.8e-11  Score=92.41  Aligned_cols=47  Identities=13%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh----CCCCCHHHHHHHHHHhhh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAAD----VPGKSLEEIKQHYELLVD   59 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~----VpGRT~~Qcr~rY~~l~~   59 (297)
                      +.||.|||.+|..+|.+|+.+.   |..||..    +++||..||++||..++.
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGR---WRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSC---HHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCccc---HHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            4799999999999999999864   9999975    689999999999998775

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.3e-11  Score=82.73  Aligned_cols=47  Identities=21%  Similarity=0.455  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC--CCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP--GKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp--GRT~~Qcr~rY~~l~   58 (297)
                      ...||.|||++|.++|.+|+.+.   |..||..++  +||..||++||..|.
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~~---W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            56899999999999999999864   999999865  899999999998765

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.8e-11  Score=82.61  Aligned_cols=48  Identities=19%  Similarity=0.416  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhh--CCCCCHHHHHHHHHHhhh
Q 022439            9 SSVWTKEQDKAFENALVSYPEDASDRWEKIAAD--VPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~--VpGRT~~Qcr~rY~~l~~   59 (297)
                      ...||.|||++|..+|++|+.+.   |..||..  +++||..||++||..++.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~---W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGN---WAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTC---HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCh---HHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            46899999999999999999754   9999998  559999999999998765

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.3e-11  Score=86.10  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ....||.||+.+|..++..||.+    |.+||++|+|||..||+++|..+..
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCch----HHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45679999999999999999975    9999999999999999999987654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2.4e-10  Score=88.05  Aligned_cols=52  Identities=21%  Similarity=0.406  Sum_probs=46.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHhCCCc---hhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          120 KGIAWTEDEHRLFLLGLDKYGKGD---WRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       120 k~~~WT~eEd~~ll~~l~k~G~g~---W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      +...||.|||++||+.++++|. +   |..||+ ++++||+.||++||+.+++.+..
T Consensus        32 ~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~-~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQ-QLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHH-HHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999996 5   999996 99999999999999887777653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.7e-11  Score=85.84  Aligned_cols=49  Identities=18%  Similarity=0.367  Sum_probs=43.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~   58 (297)
                      ......||.||+++|..++.+|+.+    |.+||++|+|||..||++||....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTSC----SSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCCc----HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3444679999999999999999975    999999999999999999998544

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=4.7e-09  Score=80.63  Aligned_cols=53  Identities=15%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhh
Q 022439            6 VGSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVD   59 (297)
Q Consensus         6 ~~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~   59 (297)
                      ......||+|||+++...+++++. ...-|..||++|+|||..||++||+.|..
T Consensus        30 G~~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          30 GEKVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344567999999999999999984 23449999999999999999999997765

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.8e-09  Score=73.35  Aligned_cols=43  Identities=26%  Similarity=0.537  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCC---chhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKG---DWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g---~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      .||.||+++|..+|.+|..|   +|.+||. +| +||..||..+++.+
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~-~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-HH-CCCHHHHHHHHHHH
Confidence            79999999999999999976   7999995 88 89999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.3e-08  Score=71.30  Aligned_cols=44  Identities=32%  Similarity=0.505  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhh-hCCCCCHHHHHHHHHHh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAA-DVPGKSLEEIKQHYELL   57 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~-~VpGRT~~Qcr~rY~~l   57 (297)
                      ..||.||.++|++++..||.+    |.+|++ .|++||..||+++|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKd----f~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHccc----HHHHHHHHcCCCCHHHHHHHHHHH
Confidence            369999999999999999997    999997 57999999999999743

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.7e-07  Score=66.32  Aligned_cols=50  Identities=24%  Similarity=0.464  Sum_probs=46.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHH
Q 022439            7 GSSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYEL   56 (297)
Q Consensus         7 ~~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~   56 (297)
                      .....|+++|...|..||+.+|...+..|..||..|..||++||.+.|..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~   55 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHh
Confidence            34568999999999999999999999999999999999999999999974

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.11  E-value=3.2e-06  Score=57.76  Aligned_cols=49  Identities=31%  Similarity=0.449  Sum_probs=43.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 022439           11 VWTKEQDKAFENALVSYPEDASDRWEKIAADVPGKSLEEIKQHYELLVDDVN   62 (297)
Q Consensus        11 ~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~VpGRT~~Qcr~rY~~l~~dv~   62 (297)
                      .|++.|...|.+|+++||.+.   .+.||..|.|||.+||++.++.+-+...
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d---~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry~   49 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD---IDNIAKDVEGKTPEEVIEYNAVFWERCT   49 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTTCCHHHHHHHHHHHHHHGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhh---HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            599999999999999999964   9999999999999999988877665443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.39  E-value=0.00026  Score=48.02  Aligned_cols=50  Identities=28%  Similarity=0.531  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHHhc
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNS  173 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Iar~~v~tRT~~Q~~sh~qky~~r~~~  173 (297)
                      .||.-|=..|+.|+.+||+.+-..||. .|.+||..+|+..++.|+.|-+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~-e~~~Kt~eEV~~Y~~vFw~ry~e   50 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERCTE   50 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHh
Confidence            399999999999999999989999995 99999999999988888877653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.18  E-value=0.00044  Score=48.78  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCChhH--HHHhhh--CCCCCHHHHHHHHHHhhhh
Q 022439            5 EVGSSSVWTKEQDKAFENALVSYPEDASDRW--EKIAAD--VPGKSLEEIKQHYELLVDD   60 (297)
Q Consensus         5 e~~~~~~WT~EEdk~Le~Ala~~p~~~~~rW--ekIA~~--VpGRT~~Qcr~rY~~l~~d   60 (297)
                      +...+-.||+||-+.|..||+.+|.+   +|  ..|...  ++|+|..||+-|.+++.-.
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~---~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVE---RAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTT---TCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcc---ccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            34456789999999999999999875   24  566555  7799999999888766543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00053  Score=44.80  Aligned_cols=42  Identities=24%  Similarity=0.452  Sum_probs=35.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCchhhhh--hhhcCCCCHHHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGKGDWRSIS--RNFVVTRTPTQVASHAQ  165 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~g~W~~Ia--r~~v~tRT~~Q~~sh~q  165 (297)
                      .||+||-.-|+.++++||. .|..|-  --|-++|+...++..+.
T Consensus         3 nft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHH
Confidence            7999999999999999999 999994  12567899888876543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.09  E-value=0.00037  Score=55.59  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCc---hhhh-----------hhhhcCCCCHHHHHHHHHHHHHHHh
Q 022439          122 IAWTEDEHRLFLLGLDKYGKGD---WRSI-----------SRNFVVTRTPTQVASHAQKYFIRLN  172 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g~---W~~I-----------ar~~v~tRT~~Q~~sh~qky~~r~~  172 (297)
                      ..+|+|||+.||..+.+||-|+   |..|           ..+|+.+||+..+..|+.-++.-+.
T Consensus        50 k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          50 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            4699999999999999999988   8887           3478999999999999886655543

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0057  Score=42.15  Aligned_cols=46  Identities=13%  Similarity=0.266  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--------chhhhhhhhcCCCCHHHHHHHHHHH
Q 022439          122 IAWTEDEHRLFLLGLDKYGKG--------DWRSISRNFVVTRTPTQVASHAQKY  167 (297)
Q Consensus       122 ~~WT~eEd~~ll~~l~k~G~g--------~W~~Iar~~v~tRT~~Q~~sh~qky  167 (297)
                      .++|+|||++|+..|.++...        -|+.+++.-++.+|-..-++||.|.
T Consensus         3 ~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~   56 (59)
T d1fexa_           3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            489999999999999997532        4999996467899999999996543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.011  Score=41.92  Aligned_cols=40  Identities=23%  Similarity=0.478  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CchhhhhhhhcCCCCHHHHHHH
Q 022439          123 AWTEDEHRLFLLGLDKYGK---GDWRSISRNFVVTRTPTQVASH  163 (297)
Q Consensus       123 ~WT~eEd~~ll~~l~k~G~---g~W~~Iar~~v~tRT~~Q~~sh  163 (297)
                      .|+++|=.+|-.+|.-+.+   |=|..+|. .|++||..+|.-.
T Consensus        10 ~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~-~VGtRSaeECQ~k   52 (73)
T d1wgxa_          10 EWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRK   52 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCCccHHHHHH-HHccCCHHHHHHH
Confidence            7999999999999998776   46999995 9999999999864

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.035  Score=35.93  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC---CCCHHHHHHHHHHh
Q 022439           10 SVWTKEQDKAFENALVSYPEDASDRWEKIAADVP---GKSLEEIKQHYELL   57 (297)
Q Consensus        10 ~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp---GRT~~Qcr~rY~~l   57 (297)
                      ..||+||..-|-+.+.+|+..    |..|-=.+|   ||++.+.-++|..|
T Consensus         2 knft~eEv~YL~~GVK~~G~~----WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch----hhhhhhccCCCCCchhhHHHHHHHhh
Confidence            579999999999999999987    999987776   99999999999765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.066  Score=36.55  Aligned_cols=50  Identities=14%  Similarity=0.264  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCC-----CChhHHHHhh-hCCCCCHHHHHHHHHHhh
Q 022439            9 SSVWTKEQDKAFENALVSYPED-----ASDRWEKIAA-DVPGKSLEEIKQHYELLV   58 (297)
Q Consensus         9 ~~~WT~EEdk~Le~Ala~~p~~-----~~~rWekIA~-~VpGRT~~Qcr~rY~~l~   58 (297)
                      +..+|.|||++|.+-|+.+...     .+.-|..++. .++.+|-.--++||.+-+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L   57 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            4579999999999999998432     4568999985 689999999999997543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.53  E-value=0.38  Score=37.54  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCChhHHHHhhhCC------------CCCHHHHHHHHHHhhhhh
Q 022439            8 SSSVWTKEQDKAFENALVSYPEDASDRWEKIAADVP------------GKSLEEIKQHYELLVDDV   61 (297)
Q Consensus         8 ~~~~WT~EEdk~Le~Ala~~p~~~~~rWekIA~~Vp------------GRT~~Qcr~rY~~l~~dv   61 (297)
                      .+...|.|||.-|...+.+||-+..+-|++|-..|-            +||+.++.+|-..|+.-|
T Consensus        48 k~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          48 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            455799999999999999999988778999864443            799999999998766543