Citrus Sinensis ID: 022442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MEMGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHHccccHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHccccHHHHHHcHHHHHHHHccccccccccHHHcccccHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHccccccHHHHHHHHHHHHHHcccccccccccEEEcccHHHHccc
Coil and Loop (DISEMBL)
memgsnnkkifsskkedlFHVIhkvpagdgpyvraKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYqgeafngkptktarshgkkfQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQmidpdankacnlGLCLIKRTRYNEARSVLEDVlygripgcedgrTRKRAEELLLELeskqpppdlsdllglnledEFVNGLEEMVRVwapsrskrlpifEEISSFRDRIAC
Flexible Loop (DISEMBL)
memgsnnkkifsskkedlFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSfrglcskqsqESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEafngkptktarshgkkfqvsvRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRtrynearsvledvlygripgcedgrTRKRAEELLLEleskqpppdlsdlLGLNLEDEFVNGLEEMVrvwapsrskrlpifeeissfrdriac
Low Complexity Region (SEG)
MEMGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAeellleleSKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered region (IsUnstruct)
****************DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK***ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN*****************VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE**************************LLGLNLEDEFVNGLEEMVRVWAPS****LPIF************
Disordered Region (DISOPRED)
********************VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY*************RAEELL*******************LEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered Region (DISEMBL)
MEMGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK*****************QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Disordered Region (DISPRO)
***************EDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRD**AC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVxxxxxxxxxxxxxxxxxxxxxLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
224065324	309	predicted protein [Populus trichocarpa]	0.956	0.919	0.811	1e-135
255560193	291	conserved hypothetical protein [Ricinus	0.962	0.982	0.791	1e-134
356567884	296	PREDICTED: uncharacterized protein LOC10	0.973	0.976	0.773	1e-131
388491310	301	unknown [Lotus japonicus]	0.973	0.960	0.745	1e-127
147814975	297	hypothetical protein VITISV_025585 [Viti	0.989	0.989	0.726	1e-124
225464225	297	PREDICTED: uncharacterized protein LOC10	0.989	0.989	0.723	1e-124
356567886	296	PREDICTED: uncharacterized protein LOC10	0.949	0.952	0.742	1e-124
356524529	297	PREDICTED: uncharacterized protein LOC10	0.952	0.952	0.741	1e-123
357505367	300	Male sterility 5 family protein [Medicag	0.989	0.98	0.719	1e-122
147783587	297	hypothetical protein VITISV_044239 [Viti	0.932	0.932	0.744	1e-120

>gi|224065324|ref|XP_002301774.1| predicted protein [Populus trichocarpa] gi|222843500|gb|EEE81047.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/286 (81%), Positives = 263/286 (91%), Gaps = 2/286 (0%)

Query: 14  KKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVM 73
           K++DLFHVIHKVPAGDGPYV+AKHAQLVQKDPEAAIV FWKAINAGD+VDSALKDMAVVM
Sbjct: 24  KEKDLFHVIHKVPAGDGPYVKAKHAQLVQKDPEAAIVWFWKAINAGDKVDSALKDMAVVM 83

Query: 74  KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE 133
           KQ+DR+EEAIEA+KSFRG CSKQ+QESLDNVLIDLYKKCGKVEEQIE++KRKLRLIYQGE
Sbjct: 84  KQIDRTEEAIEAVKSFRGRCSKQAQESLDNVLIDLYKKCGKVEEQIELIKRKLRLIYQGE 143

Query: 134 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193
           AFNGKPTKTARSHGKKFQVSV+QETSRLLGNL WAYMQK NF+AAEVVYQKAQMIDPDAN
Sbjct: 144 AFNGKPTKTARSHGKKFQVSVKQETSRLLGNLGWAYMQKPNFIAAEVVYQKAQMIDPDAN 203

Query: 194 KACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSD 253
           KACNL LCLIK+ RY+EARSVL DV  GR+PG  D ++R RAEELL+E++S++ P +L+D
Sbjct: 204 KACNLALCLIKQARYDEARSVLLDVSQGRLPGSGDVKSRSRAEELLMEVKSRETPDELTD 263

Query: 254 LLGLNL--EDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           +LG NL  +D+FV GLE+++  WAPSRSKRLPIFEEISSFRD + C
Sbjct: 264 MLGFNLDEDDDFVKGLEKLMSEWAPSRSKRLPIFEEISSFRDPLTC 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560193|ref|XP_002521114.1| conserved hypothetical protein [Ricinus communis] gi|223539683|gb|EEF41265.1| conserved hypothetical protein [Ricinus communis]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/288 (79%), Positives = 265/288 (92%), Gaps = 2/288 (0%)

Query: 12  SSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAV 71
           +SKK+DLFHVI+KVP+GDGPYV+AKHAQLVQKDPEAAIV FWKAINAGDRVDSALKDMAV
Sbjct: 4   NSKKKDLFHVIYKVPSGDGPYVKAKHAQLVQKDPEAAIVWFWKAINAGDRVDSALKDMAV 63

Query: 72  VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 131
           VMKQ+DR+EEAIEAIKSFRG CS+ +QESLDNVLIDLYKKCGKVEEQI++LKRKLRLIYQ
Sbjct: 64  VMKQVDRTEEAIEAIKSFRGRCSRNAQESLDNVLIDLYKKCGKVEEQIDLLKRKLRLIYQ 123

Query: 132 GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191
           GEAFNGKPTKTARSHGKKFQVSV QETSRLLGNL WAYMQK+NFMAAEVVY+KAQMIDPD
Sbjct: 124 GEAFNGKPTKTARSHGKKFQVSVEQETSRLLGNLGWAYMQKSNFMAAEVVYKKAQMIDPD 183

Query: 192 ANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDL 251
           ANKA NLG CLI++ RY+EAR +L++VL GR PG  D ++RKRA+ELL+E+ESK PPP+L
Sbjct: 184 ANKAYNLGFCLIRQARYDEARQILQNVLEGRFPGSNDCKSRKRAQELLMEMESKLPPPEL 243

Query: 252 SDLLGLNL--EDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           ++ +G+N+  +D+FV G+E+M+  WAPSR KRLPIFEEISS RD++AC
Sbjct: 244 TNRIGINVDGDDDFVKGIEQMMNKWAPSRPKRLPIFEEISSLRDQLAC 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567884|ref|XP_003552145.1| PREDICTED: uncharacterized protein LOC100805188 [Glycine max]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/291 (77%), Positives = 256/291 (87%), Gaps = 2/291 (0%)

Query: 7   NKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSAL 66
           NK     KK+DL+HV+HKVP GD PYVRAKHAQLV+KDPEAAIVLFWKAIN+GD+VDSAL
Sbjct: 8   NKSAPKGKKDDLYHVLHKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINSGDKVDSAL 67

Query: 67  KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126
           KDMAVVMKQLDRS+EAIEAI+SFR LCSKQSQESLDNVLIDLYKKCGK++EQIEMLKRKL
Sbjct: 68  KDMAVVMKQLDRSDEAIEAIRSFRSLCSKQSQESLDNVLIDLYKKCGKIDEQIEMLKRKL 127

Query: 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186
           +LIYQGEAFNGK TKTARSHGKKFQVS++QETSRLLGNL WAYMQK N+M AEVVY+KAQ
Sbjct: 128 KLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYMMAEVVYRKAQ 187

Query: 187 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ 246
           +IDPD NKACNLGLCLI++ RY EA+ VLEDVL G +PG +D + RKRA++L  EL S  
Sbjct: 188 IIDPDCNKACNLGLCLIRQARYEEAQLVLEDVLKGNLPGSDDSKARKRAQDLRTELRSML 247

Query: 247 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           PPP  SDLLGL+  DEF+ GLE+++  W P RSKRLPIFEEISSFRD++AC
Sbjct: 248 PPPHFSDLLGLD--DEFIKGLEQLMNEWGPIRSKRLPIFEEISSFRDQLAC 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491310|gb|AFK33721.1| unknown [Lotus japonicus]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/291 (74%), Positives = 252/291 (86%), Gaps = 2/291 (0%)

Query: 7   NKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSAL 66
           N      KK+D +HV+HKVP GD PYVRAKHAQLV+KDPE AI LFW+AIN GD+VDSAL
Sbjct: 13  NYNCSKGKKDDSYHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSAL 72

Query: 67  KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL 126
           KDMAVVMKQLDRSEEAIEAI SFRGLCSKQSQESLDNVLIDLYKKCGK++EQIE+LKRKL
Sbjct: 73  KDMAVVMKQLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKL 132

Query: 127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ 186
           +LIY+GEAFNGK TKTARSHGKKFQVS++QETSRLLGNL WAYMQK N++ AE VY+KAQ
Sbjct: 133 KLIYEGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAEAVYRKAQ 192

Query: 187 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ 246
           MIDPD NKACNLGLCLIK+ RY EA++++EDVL G  PG +D +++KRA++LL EL S  
Sbjct: 193 MIDPDCNKACNLGLCLIKQARYEEAQTIIEDVLRGNYPGSDDSKSKKRAQDLLTELRSML 252

Query: 247 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           PPP  SDLLG  L+DEF+ GLE+++  W P RS+RLPIFEEISSFRD++AC
Sbjct: 253 PPPHFSDLLG--LDDEFIKGLEQLINEWGPIRSRRLPIFEEISSFRDQLAC 301

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814975|emb|CAN74743.1| hypothetical protein VITISV_025585 [Vitis vinifera]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/300 (72%), Positives = 261/300 (87%), Gaps = 6/300 (2%)

Query: 1   MEMGSNNKKIFSSKK--EDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINA 58
           ME  S  K   SS+K  +D F V+HK+P+GD PYVRAKHAQLV+KDPE AIVLFWKAINA
Sbjct: 1   MEESSRRK---SSRKGDKDPFCVLHKLPSGDTPYVRAKHAQLVEKDPEVAIVLFWKAINA 57

Query: 59  GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118
           GDRVDSALKDMAVVMKQLDR+EEAIEAIKSFR LCSKQ+QESLDNVLIDLYKKCG+++EQ
Sbjct: 58  GDRVDSALKDMAVVMKQLDRTEEAIEAIKSFRSLCSKQAQESLDNVLIDLYKKCGRIDEQ 117

Query: 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178
           I++LK+KLRLIYQGEAFNGKPTKTARSHGKKFQVS++QETSR+LGNL WAYMQK+N+MAA
Sbjct: 118 IDLLKQKLRLIYQGEAFNGKPTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKSNYMAA 177

Query: 179 EVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 238
           EVVY+KAQMIDPDANKACNL LCLIK+ R +EARS+L +VL G IPG ED + + RA+EL
Sbjct: 178 EVVYKKAQMIDPDANKACNLALCLIKQARNSEARSILNEVLQGNIPGSEDCKAQNRAQEL 237

Query: 239 LLELESKQPPPDLS-DLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           +LE+E +  PP     +   +LED+ ++GLE+++  WAPSR+KRLPIFEEISS+R+++AC
Sbjct: 238 MLEVEPRWLPPSTKMKIARFDLEDDLIDGLEKLLNEWAPSRTKRLPIFEEISSYRNQLAC 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464225|ref|XP_002265748.1| PREDICTED: uncharacterized protein LOC100252818 [Vitis vinifera] gi|297744303|emb|CBI37273.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/300 (72%), Positives = 261/300 (87%), Gaps = 6/300 (2%)

Query: 1   MEMGSNNKKIFSSKK--EDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINA 58
           ME  S  K   SS+K  +D F V+HK+P+GD PYVRAKHAQLV+KDPE AIVLFWKAINA
Sbjct: 1   MEESSRRK---SSRKGDKDPFCVLHKLPSGDTPYVRAKHAQLVEKDPEVAIVLFWKAINA 57

Query: 59  GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118
           GDRVDSALKDMAVVMKQLDR+EEAIEAIKSFR LCSKQ+QESLDNVLIDLYKKCG+++EQ
Sbjct: 58  GDRVDSALKDMAVVMKQLDRTEEAIEAIKSFRSLCSKQAQESLDNVLIDLYKKCGRIDEQ 117

Query: 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178
           I++LK+KLRLIYQGEAFNGKPTKTARSHGKKFQVS++QETSR+LGNL WAYMQK+N+MAA
Sbjct: 118 IDLLKQKLRLIYQGEAFNGKPTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKSNYMAA 177

Query: 179 EVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 238
           EVVY+KAQMIDPDANKACNL LCLIK+ R +EARS+L +VL G IPG ED + + RA+EL
Sbjct: 178 EVVYKKAQMIDPDANKACNLALCLIKQARNSEARSILNEVLQGNIPGSEDCKAQNRAQEL 237

Query: 239 LLELESKQPPPDLS-DLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           ++E+E +  PP     +   +LED+ ++GLE+++  WAPSR+KRLPIFEEISS+R+++AC
Sbjct: 238 MVEVEPRWLPPSTKMKIARFDLEDDLIDGLEKLLNEWAPSRTKRLPIFEEISSYRNQLAC 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567886|ref|XP_003552146.1| PREDICTED: uncharacterized protein LOC100805731 [Glycine max]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 251/284 (88%), Gaps = 2/284 (0%)

Query: 14  KKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVM 73
           KK+DL+HVIHKVP GD PYV+AKHAQLV KDPEAAIVLFWKAINAGD+VDSALKDMAVVM
Sbjct: 15  KKDDLYHVIHKVPYGDSPYVKAKHAQLVDKDPEAAIVLFWKAINAGDKVDSALKDMAVVM 74

Query: 74  KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE 133
           KQLDRSEEAIEAIKSFRGLCSK SQESLDNVL+DLYKKCGK+EEQIE+LKRKLRLIYQGE
Sbjct: 75  KQLDRSEEAIEAIKSFRGLCSKHSQESLDNVLLDLYKKCGKIEEQIELLKRKLRLIYQGE 134

Query: 134 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN 193
           AFNG+ T+TARSHGKKFQVS++QET+RLLGNL WAYMQK N+M AEVV++KAQM+D DAN
Sbjct: 135 AFNGRTTRTARSHGKKFQVSIKQETARLLGNLGWAYMQKENYMMAEVVFKKAQMVDADAN 194

Query: 194 KACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSD 253
           KACNLGLCL+++ RY EA  +LE+VL G+  G ++ ++RKRAEELL EL +  P P+   
Sbjct: 195 KACNLGLCLMRQCRYEEAYYILEEVLQGKHQGSDEIKSRKRAEELLEELNANLPQPEF-- 252

Query: 254 LLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           +  L+L+D+FV G+++M+  W  +RS+RLPIFEEISSFRD++AC
Sbjct: 253 MADLDLDDDFVKGIDDMLDAWNTNRSRRLPIFEEISSFRDQLAC 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524529|ref|XP_003530881.1| PREDICTED: uncharacterized protein LOC100788542 [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/286 (74%), Positives = 251/286 (87%), Gaps = 3/286 (1%)

Query: 13  SKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVV 72
            KK+DL+HVIHKVP GD PYV+AKHAQLV KDPEAAIVLFWKAIN GD+VDSALKDMAVV
Sbjct: 14  GKKDDLYHVIHKVPYGDSPYVKAKHAQLVDKDPEAAIVLFWKAINCGDKVDSALKDMAVV 73

Query: 73  MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132
           MKQLDRSEEAIEAIKSFRGLCSK SQESLDNVL+DLYKKCGK+EEQIE+LKRKLRLIYQG
Sbjct: 74  MKQLDRSEEAIEAIKSFRGLCSKHSQESLDNVLLDLYKKCGKIEEQIELLKRKLRLIYQG 133

Query: 133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192
           EAFNG+ T+TARSHGKKFQVS++QET+RLLGNL WAYMQK N+M AEVV++KAQM+D DA
Sbjct: 134 EAFNGRTTRTARSHGKKFQVSIKQETARLLGNLGWAYMQKENYMMAEVVFKKAQMVDADA 193

Query: 193 NKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLS 252
           NKACNLGLCL++++RY EA  +LE+VL G IPG ++ ++RKRAEELL EL +  P P+  
Sbjct: 194 NKACNLGLCLMRQSRYKEAYYILEEVLMGIIPGSDEIKSRKRAEELLEELNANLPQPEFM 253

Query: 253 DLLGLNLEDEFVNGLEEMVRVW-APSRSKRLPIFEEISSFRDRIAC 297
           D LGL+  D+FV G+++++  W   +R +RLPIFEEISSFRD++AC
Sbjct: 254 DALGLD--DDFVKGIDDLLDAWNTNNRPRRLPIFEEISSFRDQLAC 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505367|ref|XP_003622972.1| Male sterility 5 family protein [Medicago truncatula] gi|355497987|gb|AES79190.1| Male sterility 5 family protein [Medicago truncatula]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/299 (71%), Positives = 258/299 (86%), Gaps = 5/299 (1%)

Query: 2   EMGS-NNKKIFSSK--KEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINA 58
           E GS  NK +  SK  KED++HV++KVP GD PYVRAKHAQLV+KDPEAAIVLFWKAINA
Sbjct: 4   ERGSYKNKSLLLSKGKKEDIYHVLYKVPYGDSPYVRAKHAQLVEKDPEAAIVLFWKAINA 63

Query: 59  GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ 118
           GD+VDSALKDMAVVMKQLDRSEEAIEAI SFRGLCSKQSQESLDNVLIDLYKKCGK++E+
Sbjct: 64  GDKVDSALKDMAVVMKQLDRSEEAIEAISSFRGLCSKQSQESLDNVLIDLYKKCGKIDEE 123

Query: 119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA 178
           I++LK+KL+LIYQGEAFNGK TKTARSHGKKFQVS++QETSRLLGNL WAYMQK N++ A
Sbjct: 124 IDLLKQKLKLIYQGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMA 183

Query: 179 EVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL 238
           E VY+KAQMIDPD NKACNLGLCLI++ RY EA+ +++D+L G +PG +D +++KRA++L
Sbjct: 184 EAVYRKAQMIDPDCNKACNLGLCLIRQARYEEAQLIIDDILKGELPGSDDIKSKKRAQDL 243

Query: 239 LLELESKQPPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
           L EL S  P P   D+L ++  DEF+ G+E+++  W P RSKRLPIFEEISS RD++AC
Sbjct: 244 LEELRSLLPTPCPLDILVMD--DEFIKGIEQLMNEWGPVRSKRLPIFEEISSCRDQLAC 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783587|emb|CAN61444.1| hypothetical protein VITISV_044239 [Vitis vinifera]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/278 (74%), Positives = 246/278 (88%), Gaps = 1/278 (0%)

Query: 19  FHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR 78
           F VIHKVP+GD PYVRAKHAQLV+KDPE AIVLFWKAINAGDRVDSALKDMAVVMKQL+R
Sbjct: 18  FCVIHKVPSGDTPYVRAKHAQLVEKDPETAIVLFWKAINAGDRVDSALKDMAVVMKQLNR 77

Query: 79  SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138
           +EEAIEAIKSFRGLCSKQ+QE LDNVLIDLYKKCG++++QI++LK+KLRLIYQGEAFNGK
Sbjct: 78  TEEAIEAIKSFRGLCSKQAQEPLDNVLIDLYKKCGRMDQQIDLLKQKLRLIYQGEAFNGK 137

Query: 139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198
           PTKTARSHGKKFQVS++QETSR+LGNL WAYMQK+ FMAAEVVY+KAQMIDPDANKACNL
Sbjct: 138 PTKTARSHGKKFQVSIKQETSRILGNLGWAYMQKSKFMAAEVVYKKAQMIDPDANKACNL 197

Query: 199 GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ-PPPDLSDLLGL 257
             CLIK+ R  EA  VL +VL G++ G ED  T+ RA+EL+LELE K  PPP+   + G 
Sbjct: 198 ARCLIKQARNVEAHLVLNEVLQGKLLGSEDCXTQNRAQELMLELEPKWLPPPETVKITGF 257

Query: 258 NLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRI 295
           +LED+F++ LE+++  W+P R+KRLPIFEEISS+R+++
Sbjct: 258 DLEDDFIDELEKLLNEWSPLRTKRLPIFEEISSYRNQL 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2156574	306	ATSDI1 "SULPHUR DEFICIENCY-IND	0.979	0.950	0.675	2.6e-102
TAIR|locus:2010612	303	AT1G04770 "AT1G04770" [Arabido	0.939	0.920	0.616	7.7e-87
TAIR|locus:2080858	430	AT3G51280 "AT3G51280" [Arabido	0.696	0.481	0.671	7.7e-71
TAIR|locus:2133099	450	MS5 "MALE-STERILE 5" [Arabidop	0.696	0.46	0.524	2.2e-57
TAIR|locus:2158750	469	AT5G44330 [Arabidopsis thalian	0.656	0.415	0.553	4.3e-54
TAIR|locus:4515103601	237	AT5G22794 "AT5G22794" [Arabido	0.225	0.282	0.716	3e-21
TAIR|locus:2031035	230	AT1G49940 "AT1G49940" [Arabido	0.101	0.130	0.6	0.0002

TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 200/296 (67%), Positives = 238/296 (80%)

Query:     5 SNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS 64
             +N+ K    K ++LFHVIHKVP GD PYVRAKHAQL++K+PE AIV FWKAIN GDRVDS
Sbjct:    13 NNSIKSNLMKDDELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDS 72

Query:    65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKR 124
             ALKDMAVVMKQLDRSEEAIEAIKSFR  CSK SQ+SLDNVLIDLYKKCG++EEQ+E+LKR
Sbjct:    73 ALKDMAVVMKQLDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKR 132

Query:   125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK 184
             KLR IYQGEAFNGKPTKTARSHGKKFQV+V+QE SRLLGNL WAYMQ+  +++AE VY+K
Sbjct:   133 KLRQIYQGEAFNGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRK 192

Query:   185 AQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAXXXXXXXXS 244
             AQM++PDANK+CNL +CLIK+ R+ E R VL+DVL  R+ G +D RTR+RA        S
Sbjct:   193 AQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDVLEYRVLGADDCRTRQRAEELLSELES 252

Query:   245 KQP---PPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRSKRLPIFEEISSFRDRIAC 297
               P     ++ D+LG  L+D+FV GLEEM       +SKRLPIFE+ISSFR+ + C
Sbjct:   253 SLPRMRDAEMEDVLGNILDDDFVLGLEEMTST--SFKSKRLPIFEQISSFRNTLVC 306

GO:0005634 "nucleus" evidence=ISM

GO:0006792 "regulation of sulfur utilization" evidence=IMP

GO:0010438 "cellular response to sulfur starvation" evidence=IEP

TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 175/284 (61%), Positives = 217/284 (76%)

Query:    19 FHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR 78
             ++V+HK+P GD PYVRAKH QLV+KD EAAI LFW AI A DRVDSALKDMA++MKQ +R
Sbjct:    20 YNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQNR 79

Query:    79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK 138
             +EEAI+AI+SFR LCS+Q+QESLDNVLIDLYKKCG++EEQ+E+LK+KL +IYQGEAFNGK
Sbjct:    80 AEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGK 139

Query:   139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL 198
             PTKTARSHGKKFQV+V +ETSR+LGNL WAYMQ  ++ AAE VY+KAQ+I+PDANKACNL
Sbjct:   140 PTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNL 199

Query:   199 GLCLIKRTRYNEARSVL-EDVLYGRIPGCEDGRTRKRAXXXXXXXXSKQPPPDLSDLLGL 257
               CLIK+ +++EARS+L  DVL     G  D R   R          ++     S  +  
Sbjct:   200 CTCLIKQGKHDEARSILFRDVLMENKEGSGDPRLMARVQELLSELKPQEEEAAASVSVEC 259

Query:   258 NLE-DEF--VNGLEEMVRVWA-PSRSKRLPIFEEISSFRDRIAC 297
              +  DE   V GL+E V+ W  P R++RLPIFEEI   RD++AC
Sbjct:   260 EVGIDEIAVVEGLDEFVKEWRRPYRTRRLPIFEEILPLRDQLAC 303

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 139/207 (67%), Positives = 166/207 (80%)

Query:    12 SSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAV 71
             S  + + FH IHKVP GD PYVRAK+ QLV+KDPE AI LFWKAINAGDRVDSALKDMA+
Sbjct:    23 SRTQSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMAI 82

Query:    72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 131
             VMKQ +R+EEAIEAIKS R  CS Q+QESLDN+L+DLYK+CG++++QI +LK KL LI +
Sbjct:    83 VMKQQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQK 142

Query:   132 GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD 191
             G AFNGK TKTARS GKKFQVSV QE +RLLGNL WA MQ+ NF+ AE  Y++A  I PD
Sbjct:   143 GLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPD 202

Query:   192 ANKACNLGLCLIKRTRYNEARSVLEDV 218
              NK CNLG+CL+K+ R +EA+  L  V
Sbjct:   203 NNKMCNLGICLMKQGRIDEAKETLRRV 229

GO:0005575 "cellular_component" evidence=ND

GO:0042802 "identical protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 117/223 (52%), Positives = 159/223 (71%)

Query:    12 SSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAV 71
             SS++ D FH++HKVP+GD PYVRAKHAQL+ KDP  AI LFW AINAGDRVDSALKDMAV
Sbjct:    44 SSERRDPFHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAV 103

Query:    72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ 131
             VMKQL RS+E IEAIKSFR LCS +SQ+S+DN+L++LYKK G++EE+  +L+ KL+ + Q
Sbjct:   104 VMKQLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQ 163

Query:   132 GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ-------- 183
             G  F G+ ++  R  GK   +++ QE +R+LGNL W ++Q  N+  AE  Y+        
Sbjct:   164 GMGFGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIP 223

Query:   184 --------KAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDV 218
                     +A  ++ D NK CNL +CL++ +R  EA+S+L+DV
Sbjct:   224 NIDYCLVMRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDV 266

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009556 "microsporogenesis" evidence=IMP

TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 108/195 (55%), Positives = 143/195 (73%)

Query:    24 KVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI 83
             +V  GD PYVRAKHAQLV KDP  AI LFW AINAGDRVDSALKDM VV+KQL+R +E I
Sbjct:    49 RVRTGDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGI 108

Query:    84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA 143
             EAIKSFR LC  +SQ+S+DN+L++LY K G++ E  E+L+ KLR + Q + + G+     
Sbjct:   109 EAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAK 168

Query:   144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLI 203
             RSH ++   ++ QE +R+LGNLAW ++Q  N+  AE  Y+ A  ++PD NK CNL +CLI
Sbjct:   169 RSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLI 228

Query:   204 KRTRYNEARSVLEDV 218
             +  R +EA+S+LEDV
Sbjct:   229 RMERTHEAKSLLEDV 243

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:4515103601 AT5G22794 "AT5G22794" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/67 (71%), Positives = 59/67 (88%)

Query:    96 QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155
             Q+QESL+NVLIDLYKK G+ EEQ+E+LK +L +IYQ EAFNGKP K ARSHG+KFQV+V 
Sbjct:    71 QAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 130

Query:   156 QETSRLL 162
             +ETSR+L
Sbjct:   131 KETSRML 137

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031035 AT1G49940 "AT1G49940" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query:   128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
             +IYQ EAFNGKP K ARSHG+ F+   R++
Sbjct:     1 MIYQEEAFNGKPAKIARSHGRNFRSRSRRK 30

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKAC-NLGLCLIKRTRYNEARSVLEDVL 219
           NL   Y +  ++  A   Y+KA  +DPD   A  NL     K  +Y EA    E  L
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVL 215
           + +    NLA AY +   +  A   Y+KA  +DPD  KA  NLGL   K  +Y EA    
Sbjct: 32  DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 216 EDVL 219
           E  L
Sbjct: 92  EKAL 95

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.81
PRK12370	553	invasion protein regulator; Provisional	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.78
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.78
PRK12370	553	invasion protein regulator; Provisional	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
KOG1126	638	consensus DNA-binding cell division cycle control	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.76
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.76
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.75
KOG1126	638	consensus DNA-binding cell division cycle control	99.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.72
PRK11189	296	lipoprotein NlpI; Provisional	99.72
KOG1125	579	consensus TPR repeat-containing protein [General f	99.7
KOG1125	579	consensus TPR repeat-containing protein [General f	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.67
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.62
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.58
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
PRK14574	822	hmsH outer membrane protein; Provisional	99.55
PLN02789	320	farnesyltranstransferase	99.55
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.54
PLN02789	320	farnesyltranstransferase	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.5
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
KOG2003	840	consensus TPR repeat-containing protein [General f	99.38
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.36
PRK14574	822	hmsH outer membrane protein; Provisional	99.35
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.33
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.32
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.31
KOG1129	478	consensus TPR repeat-containing protein [General f	99.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.3
KOG2076	895	consensus RNA polymerase III transcription factor	99.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.3
KOG0553	304	consensus TPR repeat-containing protein [General f	99.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.29
KOG2076	895	consensus RNA polymerase III transcription factor	99.26
KOG1129	478	consensus TPR repeat-containing protein [General f	99.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.25
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.24
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.24
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.23
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.22
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PLN03218	1060	maturation of RBCL 1; Provisional	99.21
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.2
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.2
KOG2003	840	consensus TPR repeat-containing protein [General f	99.18
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.17
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.15
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.13
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.11
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.1
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.1
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.1
PLN03218	1060	maturation of RBCL 1; Provisional	99.09
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.07
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.06
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
PLN03077	857	Protein ECB2; Provisional	99.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.01
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.01
PRK10803	263	tol-pal system protein YbgF; Provisional	99.01
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.01
PF12688	120	TPR_5: Tetratrico peptide repeat	99.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.01
PRK15331	165	chaperone protein SicA; Provisional	98.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.97
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.95
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.95
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.94
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.93
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.93
PRK11906	458	transcriptional regulator; Provisional	98.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.91
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.9
PRK15331	165	chaperone protein SicA; Provisional	98.9
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.9
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.89
PF12688	120	TPR_5: Tetratrico peptide repeat	98.88
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.88
PLN03077	857	Protein ECB2; Provisional	98.86
PRK10803	263	tol-pal system protein YbgF; Provisional	98.82
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.79
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.78
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.72
PRK04841	903	transcriptional regulator MalT; Provisional	98.7
PF13371	73	TPR_9: Tetratricopeptide repeat	98.69
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.69
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.68
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.68
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.67
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.64
PF13371	73	TPR_9: Tetratricopeptide repeat	98.64
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.63
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.62
PRK11906	458	transcriptional regulator; Provisional	98.6
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.6
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.58
PF13512	142	TPR_18: Tetratricopeptide repeat	98.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.58
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.56
KOG4555	175	consensus TPR repeat-containing protein [Function	98.45
PF13428	44	TPR_14: Tetratricopeptide repeat	98.45
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.43
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.43
KOG4234	271	consensus TPR repeat-containing protein [General f	98.39
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.37
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.33
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.31
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.31
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.29
PF13512	142	TPR_18: Tetratricopeptide repeat	98.29
KOG4234	271	consensus TPR repeat-containing protein [General f	98.29
PF13431	34	TPR_17: Tetratricopeptide repeat	98.26
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.26
PF13431	34	TPR_17: Tetratricopeptide repeat	98.26
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.23
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.2
KOG4555	175	consensus TPR repeat-containing protein [Function	98.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.11
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.08
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.07
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.04
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.97
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.93
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.9
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.9
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.87
KOG1585	308	consensus Protein required for fusion of vesicles	97.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.78
KOG1586	288	consensus Protein required for fusion of vesicles	97.74
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.74
KOG1586	288	consensus Protein required for fusion of vesicles	97.74
PF13428	44	TPR_14: Tetratricopeptide repeat	97.72
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.67
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.59
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.57
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.54
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.5
KOG2471	696	consensus TPR repeat-containing protein [General f	97.49
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.49
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.47
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.42
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.4
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.35
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.27
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.27
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.24
KOG1585	308	consensus Protein required for fusion of vesicles	97.23
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.2
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.15
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.14
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.08
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.98
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.92
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.91
PRK10941	269	hypothetical protein; Provisional	96.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.86
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.84
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.83
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.82
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.81
PRK10941	269	hypothetical protein; Provisional	96.68
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.66
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.52
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.46
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.43
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.27
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.18
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.16
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.12
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.09
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.07
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.84
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.83
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.67
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.66
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.63
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.5
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.31
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.27
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.25
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.24
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.23
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.18
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.02
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	95.01
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.0
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.86
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.71
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.65
KOG2471	696	consensus TPR repeat-containing protein [General f	94.59
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.47
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.44
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.41
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.38
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.31
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.22
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.13
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.5
COG2912	269	Uncharacterized conserved protein [Function unknow	93.45
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.24
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.79
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.66
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.51
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.35
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.11
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.55
KOG3364	149	consensus Membrane protein involved in organellar	91.54
COG2912	269	Uncharacterized conserved protein [Function unknow	91.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.97
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.81
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.54
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.15
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.13
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.85
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.79
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.58
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.57
COG3947	361	Response regulator containing CheY-like receiver a	89.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.23
PF12854	34	PPR_1: PPR repeat	89.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.09
PF12854	34	PPR_1: PPR repeat	88.99
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.83
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	88.72
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.64
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.81
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.27
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.9
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.94
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.66
KOG1258	577	consensus mRNA processing protein [RNA processing	84.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	84.09
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	83.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	83.84
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	83.81
KOG1310	758	consensus WD40 repeat protein [General function pr	83.73
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	83.67
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	83.13
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	82.62
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.51
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	82.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.02
KOG3364	149	consensus Membrane protein involved in organellar	81.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.63
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	81.12
PF13041	50	PPR_2: PPR repeat family	81.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	81.01
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	81.0
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.72
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.67
KOG4814	872	consensus Uncharacterized conserved protein [Funct	80.41

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=4.5e-24  Score=200.80  Aligned_cols=231  Identities=21%  Similarity=0.159  Sum_probs=162.9

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |+=..+|.++|.++...+.++.|+.+|.+|+.+.|+++.++-|||.+|..+|..+-||..|++++++.|...  ..+++|
T Consensus       249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~Nl  326 (966)
T KOG4626|consen  249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP--DAYNNL  326 (966)
T ss_pred             CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch--HHHhHH
Confidence            555567888888887778888888888888888888888888888888888888888888888888888642  456667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhh------h--HHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGK------K--FQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~------~--~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      +..+...|+..||.++|.++|.+.|.- .+.+ ++..+.+..+.      .  ..+++.|+.+.+++|||.+|.++|+++
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~  405 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD  405 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence            777788888888888888888887631 1111 11112222221      1  125778888899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC----------cchhhHHHHHHHHHHHHhc
Q 022442          177 AAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC----------EDGRTRKRAEELLLELESK  245 (297)
Q Consensus       177 eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~----------~~~~~~~~a~~~l~~~~~~  245 (297)
                      +|+.+|+.||.++|+..+ +.|+|.+|-.+|+.++|+..|.+++..+|--.          -+..+...|..-.+.....
T Consensus       406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence            999999999999999988 88899999999999999999999888733100          0223334455555544443


Q ss_pred             CC-CCchhhhhcccc
Q 022442          246 QP-PPDLSDLLGLNL  259 (297)
Q Consensus       246 ~~-~~~~~~~~~~~~  259 (297)
                      .| -+++..++...+
T Consensus       486 kPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  486 KPDFPDAYCNLLHCL  500 (966)
T ss_pred             CCCCchhhhHHHHHH
Confidence            33 355555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-23  Score=196.58  Aligned_cols=199  Identities=18%  Similarity=0.198  Sum_probs=169.3

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |+..-++-+.+-++..+|+.+-||..|+++|.++|++++++.|||+.+...|+..||+..|.+++.++|.++  ...++|
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--dam~NL  360 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--DAMNNL  360 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--HHHHHH
Confidence            333334444444577899999999999999999999999999999999999999999999999999999854  455669


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh------H--HHhcCCCcHHHHHHHHHHHHHCCChHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK------F--QVSVRQETSRLLGNLAWAYMQKTNFMA  177 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~------~--~~~l~p~~~~~l~nLg~~y~~~g~~~e  177 (297)
                      |.+|.++|.+++|+.+|+++++..|.-++-.+++..+...+++.      +  .+.|+|.+++++.|+|.+|.++|+.++
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~  440 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA  440 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence            99999999999999999999999886544333333333333331      1  268999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442          178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  226 (297)
Q Consensus       178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~  226 (297)
                      |+.+|.+|+.++|...+ +.|||.+|...|+..+|+..|+.++...|..+
T Consensus       441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence            99999999999999999 99999999999999999999999999854333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=1.5e-19  Score=179.50  Aligned_cols=214  Identities=14%  Similarity=0.054  Sum_probs=164.4

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      .++...+.++...|++++|+..|++++..+|+...++..+|.++..+|++++|+..|++++..+|+++  .++..+|.+|
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~~~  409 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence            35666677788889999999999999999999988999999999999999999999999999988753  4566688889


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      ...|++++|+..|++++++.|                          ++..++.++|.++..+|++++|+..|++++...
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P--------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  463 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDP--------------------------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF  463 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCc--------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999888754                          556678889999999999999999999999999


Q ss_pred             CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---c--------------hhhHHHHHHHHHHHHhcCC-CCc
Q 022442          190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---D--------------GRTRKRAEELLLELESKQP-PPD  250 (297)
Q Consensus       190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---~--------------~~~~~~a~~~l~~~~~~~~-~~~  250 (297)
                      |+++. +.++|.++..+|++++|+..|++++...+....   .              ...+..|...+.......| +..
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~  543 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI  543 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            99988 888999999999999999999999887432111   0              2344556666665433333 333


Q ss_pred             hhhhhcccc-----hhHHHHHHHHHH
Q 022442          251 LSDLLGLNL-----EDEFVNGLEEMV  271 (297)
Q Consensus       251 ~~~~~~~~~-----~d~~~~~~~~~l  271 (297)
                      +...+|..+     ++++++.|+..+
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            344455544     355555565543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=1.7e-18  Score=177.91  Aligned_cols=199  Identities=12%  Similarity=0.042  Sum_probs=148.4

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      ..+...|+ +......+.+....|++++|+..|++++...|.. ..++.+|.++.+.|++++|+..|++++..+|+..  
T Consensus       501 ~Al~~~Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~--  576 (987)
T PRK09782        501 QAEQRQPD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN--  576 (987)
T ss_pred             HHHHhCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH--
Confidence            44555553 3333344555567888888888888877765554 4577888888888888888888888888888632  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hH--HHhcCCCcHHHHHHHHHHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KF--QVSVRQETSRLLGNLAWAYMQ  171 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~--~~~l~p~~~~~l~nLg~~y~~  171 (297)
                      .+...++..+...|++++|+..|++++++.|....+.+. .......++      .+  .+.++|+++.++.++|.++.+
T Consensus       577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~L-A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~  655 (987)
T PRK09782        577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVAR-ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD  655 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            333334545556688888888888888888753332210 011111111      11  157789999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          172 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       172 ~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                      +|++++|+.+|++|++++|+++. +.+||.++..+|++++|+..|++++...|
T Consensus       656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998 99999999999999999999999999843

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=2.8e-18  Score=171.26  Aligned_cols=261  Identities=13%  Similarity=0.083  Sum_probs=183.6

Q ss_pred             cchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442           13 SKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG   91 (297)
Q Consensus        13 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~   91 (297)
                      .....++ ..+...|.++.+...++...+..|++++|+..|++++..+|+++.++..+|.++.++|++++|++.|++++.
T Consensus        59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~  138 (656)
T PRK15174         59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL  138 (656)
T ss_pred             chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444 555666777778888888888889999999999999999999998999999999999999999999999998


Q ss_pred             hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hh-c-------Ccc-----------------------
Q 022442           92 LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AF-N-------GKP-----------------------  139 (297)
Q Consensus        92 ~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~-~-------~~~-----------------------  139 (297)
                      ++|++.  .....++.++...|++++|+..+++++...|... ++ .       +..                       
T Consensus       139 l~P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~  216 (656)
T PRK15174        139 AFSGNS--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG  216 (656)
T ss_pred             hCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence            888743  3555578888888888888888888877765321 11 0       000                       


Q ss_pred             --hhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCCChHH----HHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442          140 --TKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTNFMA----AEVVYQKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       140 --~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g~~~e----A~~~y~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                        .......++      .+.  +.+.|+++.++.+||.+|..+|++++    |+..|+++++++|++.. +.++|.++..
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  296 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR  296 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence              000000010      011  46778999999999999999999986    89999999999999988 8899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhhcccc-----hhHHHHHHH
Q 022442          205 RTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL-----EDEFVNGLE  268 (297)
Q Consensus       205 ~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~-----~d~~~~~~~  268 (297)
                      +|++++|+..+++++...+..+.          ....++.|...+..+....|. +......|..+     .++..+.|+
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~  376 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE  376 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999987433221          134455666666655443433 22121122222     466777777


Q ss_pred             HHHhhcC
Q 022442          269 EMVRVWA  275 (297)
Q Consensus       269 ~~l~~~~  275 (297)
                      ..+...+
T Consensus       377 ~al~~~P  383 (656)
T PRK15174        377 HYIQARA  383 (656)
T ss_pred             HHHHhCh
Confidence            6665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.81  E-value=1.2e-17  Score=142.78  Aligned_cols=167  Identities=22%  Similarity=0.182  Sum_probs=150.1

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ...+...+..+...|++++|+..+++++..+|++..++..+|.++..+|++++|++.+++++...|.+.  .....+|.+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence            345777788888999999999999999999999999999999999999999999999999999999743  455668999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      |...|++++|+..+++++...+                        .|.....+.++|.++...|++++|+..|.+++..
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999997521                        1223457889999999999999999999999999


Q ss_pred             CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+++. +..+|.++...|++++|...+++++..
T Consensus       165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999988 889999999999999999999999986

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=4.9e-18  Score=166.62  Aligned_cols=180  Identities=14%  Similarity=0.034  Sum_probs=149.5

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQL---------VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI   83 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi   83 (297)
                      ...+.|...... |....++..++.++.         ..+++++|+..++++++++|+++.++..+|.++..+|++++|+
T Consensus       279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~  358 (553)
T PRK12370        279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS  358 (553)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            344556444444 555556665555433         2355899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  163 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~  163 (297)
                      ..|+++++++|+++  ..++.+|.+|...|++++|+..++++++++|                          +++.++.
T Consensus       359 ~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--------------------------~~~~~~~  410 (553)
T PRK12370        359 LLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDP--------------------------TRAAAGI  410 (553)
T ss_pred             HHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------------CChhhHH
Confidence            99999999999854  3556689999999999999999999999865                          3444556


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhC-CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~-P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .++.++...|++++|+..+++++... |+++. +.++|.+|..+|++++|...+++++..
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            67777888999999999999999885 77887 889999999999999999999998775

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=1e-17  Score=166.44  Aligned_cols=81  Identities=14%  Similarity=0.026  Sum_probs=64.3

Q ss_pred             cccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442            9 KIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS   88 (297)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~   88 (297)
                      ++.-...-..|....++.+++..+.+.+.+++..|++++|+..+.++++++|++..+++.+|.++..+|++++|+..|..
T Consensus       140 ~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~  219 (615)
T TIGR00990       140 NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA  219 (615)
T ss_pred             cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444556667555555445566777888888999999999999999999999999999999999999999999875544


Q ss_pred             H
Q 022442           89 F   89 (297)
Q Consensus        89 a   89 (297)
                      +
T Consensus       220 ~  220 (615)
T TIGR00990       220 S  220 (615)
T ss_pred             H
Confidence            3

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.80  E-value=4e-17  Score=138.47  Aligned_cols=164  Identities=22%  Similarity=0.136  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      ...++.-++..||+..|...+++||+.+|+...+|..++.+|..+|..+-|-+.|++++.++|++.  .+.|+.|.-+..
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHHHHh
Confidence            445566788999999999999999999999999999999999999999999999999999999853  577778999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      +|++++|...|++|+.. |.                       -|..++++-|+|+|-.+.|+++.|.+.|+++|+++|+
T Consensus       116 qg~~~eA~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         116 QGRPEEAMQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             CCChHHHHHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence            99999999999999985 30                       1345678999999999999999999999999999999


Q ss_pred             cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          192 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       192 ~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++. ...++....+.|++-.|...+++....
T Consensus       172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         172 FPPALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             CChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            998 999999999999999999999998875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=4.1e-17  Score=162.93  Aligned_cols=201  Identities=14%  Similarity=0.038  Sum_probs=130.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      .++..|++++|+..++++++.+|. .......++.++..+|++++|+..+++++..+|++.  .....+|.+|...|+++
T Consensus       186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--~~~~~Lg~~l~~~G~~~  263 (656)
T PRK15174        186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--ALRRSLGLAYYQSGRSR  263 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCch
Confidence            355667777777777776666542 233334456666777777777777777777776632  34444667777777776


Q ss_pred             H----HHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          117 E----QIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       117 e----Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      +    |+..|++++++.|................+      ..+  .+.+.|+++.++.++|.+|.++|++++|+..|++
T Consensus       264 eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        264 EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4    677777777766542211000000000000      001  1355678888999999999999999999999999


Q ss_pred             HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                      ++..+|++.. ...+|.++...|++++|+..|++++...+...  +..++.+...+...
T Consensus       344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~  400 (656)
T PRK15174        344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQ  400 (656)
T ss_pred             HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHH
Confidence            9999999887 66679999999999999999999998733222  33344455555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.78  E-value=5.5e-17  Score=147.27  Aligned_cols=200  Identities=10%  Similarity=-0.064  Sum_probs=147.8

Q ss_pred             hhhhhcCCCCCc----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           19 FHVIHKVPAGDG----PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        19 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      ..++.+.+.++.    .++..+.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|++.|+++++++|
T Consensus        50 ~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P  129 (296)
T PRK11189         50 NQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP  129 (296)
T ss_pred             HHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            366655543333    4777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc--CcchhHHhhhhh---hHHHhcCCCcHHHHHHHHHHH
Q 022442           95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN--GKPTKTARSHGK---KFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~--~~~~~~~~~~~~---~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      ++.  ..+..+|.++...|++++|+..+++++++.|......  ............   .+...+...++..+. .+.++
T Consensus       130 ~~~--~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~  206 (296)
T PRK11189        130 TYN--YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVE  206 (296)
T ss_pred             CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHH
Confidence            853  3455689999999999999999999999988543110  000000000011   111112222222332 46777


Q ss_pred             HHCCChHHHHHHHHHH-------HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          170 MQKTNFMAAEVVYQKA-------QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~A-------l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ..+|++.++ ..+..+       ++++|+... +++||.++..+|++++|+.+|++++..+
T Consensus       207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            778887654 233333       366777777 9999999999999999999999999983

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.78  E-value=8.4e-17  Score=165.55  Aligned_cols=250  Identities=13%  Similarity=0.063  Sum_probs=185.1

Q ss_pred             hhhhcCCC--CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442           20 HVIHKVPA--GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS   97 (297)
Q Consensus        20 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~   97 (297)
                      +.+..+|+  ...++..++.++.. +++++|+..|.+++...|+.. ....+|.++.+.|++++|+..|+++....|.. 
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-  542 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-  542 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-
Confidence            44445565  55678888888875 899999999999999999865 46667888889999999999999988776653 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH---hhhhh---hHH--HhcCCCcHHHHHHHHHHH
Q 022442           98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA---RSHGK---KFQ--VSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~---~~~~~---~~~--~~l~p~~~~~l~nLg~~y  169 (297)
                       .. ...+|.++.+.|++++|+.+|++++++.|.............   .....   .+.  +.++|+ +.++.++|.++
T Consensus       543 -~a-~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l  619 (987)
T PRK09782        543 -ED-LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY  619 (987)
T ss_pred             -HH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence             22 345788899999999999999999998764321110000000   01111   111  577897 89999999999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHH
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEEL  238 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~  238 (297)
                      .++|++++|+.+|++++.++|+++. +.++|.++...|++++|+.+|++++...|.++.          ....++.|...
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~  699 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY  699 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999 999999999999999999999999998443322          23445567777


Q ss_pred             HHHHHhcCC-CCchhhhhcccc--hhHHHHHHHHHHhhcC
Q 022442          239 LLELESKQP-PPDLSDLLGLNL--EDEFVNGLEEMVRVWA  275 (297)
Q Consensus       239 l~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~~l~~~~  275 (297)
                      ++......| .+...+.+|...  ..+|-...+.+-.+|.
T Consensus       700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            766644444 577788788766  2334444444444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=1.9e-17  Score=162.49  Aligned_cols=178  Identities=11%  Similarity=0.031  Sum_probs=149.0

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG  113 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g  113 (297)
                      +++++|+.+|+++++++|+++.++..+|.++...         +++++|+..++++++++|+++  ..+..+|.++...|
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcc
Confidence            4578999999999999999999999999887644         348999999999999999864  45566899999999


Q ss_pred             CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                      ++++|+..|+++++++                          |+++.+++++|.+|..+|++++|+.+|+++++++|+++
T Consensus       353 ~~~~A~~~~~~Al~l~--------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        353 EYIVGSLLFKQANLLS--------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             CHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999985                          46778999999999999999999999999999999998


Q ss_pred             H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-----------chhhHHHHHHHHHHHHhcCCC
Q 022442          194 K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE-----------DGRTRKRAEELLLELESKQPP  248 (297)
Q Consensus       194 ~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~-----------~~~~~~~a~~~l~~~~~~~~~  248 (297)
                      . ...++.++...|++++|+..+++++...+++.+           ...+.+.|...+..+....+.
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            7 666777788899999999999999875322222           134556777777776555444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=1.5e-16  Score=168.24  Aligned_cols=235  Identities=15%  Similarity=0.130  Sum_probs=179.0

Q ss_pred             cccccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH---------------
Q 022442            9 KIFSSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVV---------------   72 (297)
Q Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~---------------   72 (297)
                      ++...+....|..+... |....++..++.++...|++++|+.+|+++++.+|++..++..++.+               
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            33445556667545444 65666788888999999999999999999999999988877665554               


Q ss_pred             ---------------------------HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442           73 ---------------------------MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK  125 (297)
Q Consensus        73 ---------------------------l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a  125 (297)
                                                 +...|++++|++.|+++++++|++.  .+...++.+|.+.|++++|+..++++
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~l~~a  521 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADALMRRL  521 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                       4467999999999999999999854  35566899999999999999999999


Q ss_pred             HHhhchhhh--hc--------Ccchh-------------------H---------------Hhhhhh---h-HHHhcCCC
Q 022442          126 LRLIYQGEA--FN--------GKPTK-------------------T---------------ARSHGK---K-FQVSVRQE  157 (297)
Q Consensus       126 l~~~p~~~~--~~--------~~~~~-------------------~---------------~~~~~~---~-~~~~l~p~  157 (297)
                      +++.|....  +.        +....                   +               ....++   . -.+...|+
T Consensus       522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~  601 (1157)
T PRK11447        522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP  601 (1157)
T ss_pred             HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            998774321  10        00000                   0               000000   0 01345788


Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---------
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---------  227 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---------  227 (297)
                      ++.++.+||.+|.++|++++|+.+|+++++.+|+++. +.+++.+|...|++++|+..+++++...+..+.         
T Consensus       602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~  681 (1157)
T PRK11447        602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW  681 (1157)
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999999999998 999999999999999999999999876332221         


Q ss_pred             -chhhHHHHHHHHHHHHhc
Q 022442          228 -DGRTRKRAEELLLELESK  245 (297)
Q Consensus       228 -~~~~~~~a~~~l~~~~~~  245 (297)
                       ...+.++|...+..+...
T Consensus       682 ~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        682 AALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HhCCCHHHHHHHHHHHhhh
Confidence             234556677777776543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=8.5e-18  Score=160.11  Aligned_cols=168  Identities=20%  Similarity=0.164  Sum_probs=125.9

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |..+.+.=.+|.++..++|++.|+++|++|++++|++..++..+|.=+..+..+|.|...|+.++..+|++.  ..++-|
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYGl  495 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYGL  495 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHhh
Confidence            555556656677777788888888888888888888888888888888888888888888888888888742  333347


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.+|.++++++.|.-.|++|++++|                          .+..++..+|.++.++|+.++|+.+|++|
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP--------------------------~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINP--------------------------SNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCc--------------------------cchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            7788888888888888888887755                          23345667777777777777777777777


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.++|.++- .++.|.++..++++++|+..++++-+.
T Consensus       550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence            777777776 777777777777777777777777766

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.76  E-value=2.3e-16  Score=159.99  Aligned_cols=194  Identities=18%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-------
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-------   98 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-------   98 (297)
                      |.+...+...+.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++..       
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  677 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ  677 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3344445555555555566666666666666666666666666666666666666666666666655554211       


Q ss_pred             -------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh-----
Q 022442           99 -------------------------ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK-----  148 (297)
Q Consensus        99 -------------------------~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----  148 (297)
                                               ......+|.++...|++++|+..|++++...|....+.. ........++     
T Consensus       678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAV  756 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHH-HHHHHHHCCCHHHHH
Confidence                                     112233455555555555555555555555443211100 0000000000     


Q ss_pred             -hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          149 -KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       149 -~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                       .+.  +...|+++.+++++|.+|..+|++++|+.+|+++++.+|+++. +.++|.++...|+ .+|+.++++++..
T Consensus       757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence             010  2445666666666666666666666666666666666666665 5566666666666 5566666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.76  E-value=3.7e-16  Score=158.48  Aligned_cols=198  Identities=18%  Similarity=0.115  Sum_probs=154.5

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442           23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD  102 (297)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~  102 (297)
                      ...|+....+...+.++...|++++|+.+|+++++.+|++..++.++|.++...|++++|+..|++++...|.+.  ...
T Consensus       459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~  536 (899)
T TIGR02917       459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL--RAI  536 (899)
T ss_pred             HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHH
Confidence            334556667777888888899999999999999999999999999999999999999999999999999998743  455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCCC
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKTN  174 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g~  174 (297)
                      ..++.++...|++++|+..++++++..|................++      .+.  +...|+++.++..+|.+|...|+
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            5678889999999999999999988876432110000000000010      111  35567888888999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          175 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       175 ~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      +++|+.+|+++++.+|+++. +..+|.++...|++++|+.+|++++...
T Consensus       617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  665 (899)
T TIGR02917       617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK  665 (899)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999998887 8888999999999999999999888763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.76  E-value=4.1e-16  Score=145.84  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHHHcC
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCG  113 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~L~~ly~~~g  113 (297)
                      +..+...|++++|+..|++++..+|++..++..+|.++..+|++++|+..+++++...+..  ........+|.+|...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3444455555555555555555555555555555555555555555555555555432211  01122334555555555


Q ss_pred             CHHHHHHHHHHHHHhh
Q 022442          114 KVEEQIEMLKRKLRLI  129 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~  129 (297)
                      ++++|+..|+++++..
T Consensus       122 ~~~~A~~~~~~~l~~~  137 (389)
T PRK11788        122 LLDRAEELFLQLVDEG  137 (389)
T ss_pred             CHHHHHHHHHHHHcCC
Confidence            5555555555555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.75  E-value=3.5e-17  Score=133.03  Aligned_cols=127  Identities=8%  Similarity=-0.103  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442           48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR  127 (297)
Q Consensus        48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~  127 (297)
                      -..+|+++++++|++   +..+|.++.+.|++++|+..|++++.++|.+.  ..+..+|.++...|++++|+..|+++++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            357899999999886   56789999999999999999999999999853  4566689999999999999999999998


Q ss_pred             hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442          128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~  205 (297)
                      ++                          |+++.+++++|.++..+|++++|+..|++|+++.|+++. +.++|.+....
T Consensus        87 l~--------------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         87 LD--------------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cC--------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            75                          467789999999999999999999999999999999998 77888776543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.75  E-value=4.2e-16  Score=133.24  Aligned_cols=181  Identities=12%  Similarity=0.001  Sum_probs=152.8

Q ss_pred             hhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           15 KEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        15 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      ..+.|. .+...|....++...+.++...|++++|+..|++++..+|.+..++.++|.++..+|++++|+..+++++...
T Consensus        50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521        50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence            334443 3344466666777788899999999999999999999999999999999999999999999999999999864


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442           94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus        94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      +..........+|.++...|++++|+..+++++...|                          +++.++..+|.++...|
T Consensus       130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~  183 (234)
T TIGR02521       130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--------------------------QRPESLLELAELYYLRG  183 (234)
T ss_pred             ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------CChHHHHHHHHHHHHcC
Confidence            3211223455589999999999999999999998754                          34567889999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+.++++++...|+++. +..++.++...|+.++|..+.+.+...
T Consensus       184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999999999998887 778899999999999999988876653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2.1e-17  Score=157.45  Aligned_cols=170  Identities=16%  Similarity=0.145  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      .|++|-.+|+++.-|++++.||+.|++++.++|+++  -.+.++|.=+.....+|.|..+|++||..             
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~fr~Al~~-------------  484 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKSFRKALGV-------------  484 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHHHHhhhcC-------------
Confidence            345555555555555555555555555555555432  13333444445555555555555555554             


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                                   +|.+-++|+.||.+|.++++++.|+-+|++|++++|.+.. .+.+|..+.++|+.++|+.+|++|+.
T Consensus       485 -------------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  485 -------------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             -------------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence                         4567789999999999999999999999999999999998 89999999999999999999999998


Q ss_pred             cCCCCCc----------chhhHHHHHHHHHHHHhcCCC-Cchhhhhcccc
Q 022442          221 GRIPGCE----------DGRTRKRAEELLLELESKQPP-PDLSDLLGLNL  259 (297)
Q Consensus       221 ~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~  259 (297)
                      ..+.++-          -...++.|...|++++...|+ +....-+|.++
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~  601 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY  601 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            7443332          245567788888888766654 44445555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=3.8e-16  Score=165.15  Aligned_cols=186  Identities=13%  Similarity=0.088  Sum_probs=141.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH------------HHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE------------SLDN  103 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~------------~l~~  103 (297)
                      +..++..|++++|+..|+++++.+|++++++..||.++.++|++++|+..|+++++.+|+....            ....
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            5667789999999999999999999999999999999999999999999999999999964211            1123


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHH------
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAY------  169 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y------  169 (297)
                      .+|.++...|++++|+..|++++++.|........+..+....+      ..+.  +.++|++..++.+++.+|      
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            45788899999999999999999997743211100011111111      1121  466788887777666554      


Q ss_pred             ------------------------------------HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442          170 ------------------------------------MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       170 ------------------------------------~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~  212 (297)
                                                          ...|++++|+.+|+++++++|+++. +++||.+|..+|++++|+
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                                                3468888888888888888888887 778888888888888888


Q ss_pred             HHHHHHHhc
Q 022442          213 SVLEDVLYG  221 (297)
Q Consensus       213 ~~~~~al~~  221 (297)
                      ..+++++..
T Consensus       516 ~~l~~al~~  524 (1157)
T PRK11447        516 ALMRRLAQQ  524 (1157)
T ss_pred             HHHHHHHHc
Confidence            888888875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.74  E-value=8e-16  Score=143.85  Aligned_cols=234  Identities=17%  Similarity=0.117  Sum_probs=171.4

Q ss_pred             ccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHCCChHHHHHHH
Q 022442           12 SSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAI   86 (297)
Q Consensus        12 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~l~~~g~~~eAi~~~   86 (297)
                      ..+..+.|..+.+. |+...++...+.++...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~  130 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELF  130 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34466677666555 5555578888888899999999999999988864332    356889999999999999999999


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-----hcCcchhHHhhhh------hhHH--Hh
Q 022442           87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-----FNGKPTKTARSHG------KKFQ--VS  153 (297)
Q Consensus        87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-----~~~~~~~~~~~~~------~~~~--~~  153 (297)
                      ++++...|..  ......++.++...|++++|++.++++++..|....     +...........+      ..+.  +.
T Consensus       131 ~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  208 (389)
T PRK11788        131 LQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA  208 (389)
T ss_pred             HHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            9999988863  345666889999999999999999999987653210     1000000000001      1111  35


Q ss_pred             cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----
Q 022442          154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----  227 (297)
Q Consensus       154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----  227 (297)
                      +.|++..++..+|.+|...|++++|+..|+++++.+|++. . +..|+.+|...|++++|+..+++++...+....    
T Consensus       209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~l  288 (389)
T PRK11788        209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLAL  288 (389)
T ss_pred             HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            6788888999999999999999999999999999999875 3 678999999999999999999999886322111    


Q ss_pred             -----chhhHHHHHHHHHHHHhcCC
Q 022442          228 -----DGRTRKRAEELLLELESKQP  247 (297)
Q Consensus       228 -----~~~~~~~a~~~l~~~~~~~~  247 (297)
                           .....+.|...+...-...|
T Consensus       289 a~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        289 AQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCc
Confidence                 13345566666665543333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.3e-16  Score=142.65  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=142.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      .+...++.++|+.+|++|+++||+...+|..+|.-|..+.+...||+.|+++++++|.|.  ..++-||..|.-++-+.=
T Consensus       339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQaYeim~Mh~Y  416 (559)
T KOG1155|consen  339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQAYEIMKMHFY  416 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHHHHHhcchHH
Confidence            355678999999999999999999999999999999999999999999999999999853  233448999999999999


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  196 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~  196 (297)
                      |+-.|++|++.                          +|+++++|..||.||.++++.++|+.||++|+...-.+.. ..
T Consensus       417 aLyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  417 ALYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             HHHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence            99999999987                          4578889999999999999999999999999999888777 88


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          197 NLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       197 nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .||.+|.++++..+|..+|++-++.
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999999998874

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.72  E-value=4.1e-16  Score=141.52  Aligned_cols=189  Identities=13%  Similarity=0.020  Sum_probs=140.6

Q ss_pred             chhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      .....|+ .+..-|+...++...+.++...|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.
T Consensus        82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189         82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3445564 444457777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-------CcchhHHhhhhhh---H--HHhcCCCcHH
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-------GKPTKTARSHGKK---F--QVSVRQETSR  160 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-------~~~~~~~~~~~~~---~--~~~l~p~~~~  160 (297)
                      +|+++...++   ..++...+++++|+..+++++...++..+..       +.... .......   +  ...+.|+.+.
T Consensus       162 ~P~~~~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~l~~~~~e  237 (296)
T PRK11189        162 DPNDPYRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE-ETLMERLKAGATDNTELAERLCE  237 (296)
T ss_pred             CCCCHHHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH-HHHHHHHHhcCCCcHHHHHHHHH
Confidence            9986432222   2344677899999999988776544332211       11110 0000000   0  1245677788


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHcC
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKRT  206 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~g  206 (297)
                      ++++||.+|.++|++++|+.+|++|++++| ++.. .+.+..+....+
T Consensus       238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ  285 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999997 6665 555544443333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=4.1e-16  Score=146.74  Aligned_cols=204  Identities=17%  Similarity=0.191  Sum_probs=157.5

Q ss_pred             hhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           15 KEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      +...|+..-..-+.+.||..+.. ++..|++.+|+-+|+.|++.+|.+.++|..||++....++-..||.+++++++++|
T Consensus       272 ~~Y~F~e~Np~~~~pdPf~eG~~-lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP  350 (579)
T KOG1125|consen  272 KGYQFSEENPYIDHPDPFKEGCN-LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP  350 (579)
T ss_pred             ccceecccCcccCCCChHHHHHH-HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC
Confidence            45566666666677788866554 45799999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------------Hhhch--
Q 022442           95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL-----------------------------------------RLIYQ--  131 (297)
Q Consensus        95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al-----------------------------------------~~~p~--  131 (297)
                      ++  ..+...|+..|...|.-.+|+.++.+-|                                         ...|.  
T Consensus       351 ~N--leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~  428 (579)
T KOG1125|consen  351 TN--LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI  428 (579)
T ss_pred             cc--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            84  3455557777777777666655555442                                         23331  


Q ss_pred             h-hhhc--CcchhHHhhh---hhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          132 G-EAFN--GKPTKTARSH---GKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       132 ~-~~~~--~~~~~~~~~~---~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                      + ....  |.+..+-+..   .+.|.  +.++|++..+|+.||..+....+..||+..|++||++.|.... ++|||+++
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            1 1111  1111111111   12232  6788999999999999999999999999999999999999998 99999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc
Q 022442          203 IKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       203 ~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+|.|+||..+|-.||..
T Consensus       509 mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHh
Confidence            9999999999999999976

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=8e-15  Score=138.11  Aligned_cols=155  Identities=19%  Similarity=0.093  Sum_probs=123.9

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-h-------h-c-
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-A-------F-N-  136 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~-------~-~-  136 (297)
                      +..|..+++.|..-+|+-+|+.++..+|.++  ..+..||.+....++-..||.++++++++.|.+. +       | | 
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe  366 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE  366 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence            4679999999999999999999999999854  3445589999999999999999999999988421 1       0 0 


Q ss_pred             Cc-------chhHHhhh-----------------------hh-------hHH--HhcCC--CcHHHHHHHHHHHHHCCCh
Q 022442          137 GK-------PTKTARSH-----------------------GK-------KFQ--VSVRQ--ETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus       137 ~~-------~~~~~~~~-----------------------~~-------~~~--~~l~p--~~~~~l~nLg~~y~~~g~~  175 (297)
                      +.       +.+..+.+                       ..       .|.  ....|  .++++...||.+|.-.|+|
T Consensus       367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence            00       00000000                       00       011  13345  6788999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          176 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       176 ~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                      +.|+.||+.||..+|++.. |..||..+..-.+.+||+..|++++++.|
T Consensus       447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            9999999999999999999 99999999999999999999999999843

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1.9e-15  Score=122.83  Aligned_cols=128  Identities=14%  Similarity=0.088  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442           83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  162 (297)
Q Consensus        83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l  162 (297)
                      ...|+++++++|++    +. .+|.++...|++++|+..|++++.+.                          |++..++
T Consensus        13 ~~~~~~al~~~p~~----~~-~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~   61 (144)
T PRK15359         13 EDILKQLLSVDPET----VY-ASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAH   61 (144)
T ss_pred             HHHHHHHHHcCHHH----HH-HHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHH
Confidence            35788999999973    22 36888899999999999999999875                          4577899


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  241 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~  241 (297)
                      .++|.++..+|++++|+.+|++++.++|+++. ++++|.++..+|++++|+..|++++...+.++.-......+...+..
T Consensus        62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 99999999999999999999999999844343333444444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=6.3e-16  Score=138.94  Aligned_cols=206  Identities=19%  Similarity=0.188  Sum_probs=89.5

Q ss_pred             chhhhhhhhhcCC-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFHVIHKVP-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      ....+|..+...+ ..+..+.++..+ +..+++++|+..++++++..+ ++..+..+..++...|+++++...++.+...
T Consensus        62 ~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~  139 (280)
T PF13429_consen   62 EAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEEL  139 (280)
T ss_dssp             ----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            3445565554443 334456666666 678999999999988887654 4566777788888999999999999887765


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHH
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGN  164 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~n  164 (297)
                      .+......+...+|.++.+.|++++|+.+|++++++.|.+..............+      ..+.  ....|+++..+..
T Consensus       140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (280)
T PF13429_consen  140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA  219 (280)
T ss_dssp             T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence            4211123455668889999999999999999999998854321100000000000      0111  1223677778899


Q ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|.+|..+|++++|+.+|++++..+|+++. ..++|.++...|+.++|..++++++..
T Consensus       220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999998 889999999999999999999998763

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.67  E-value=1.1e-14  Score=147.99  Aligned_cols=182  Identities=11%  Similarity=0.049  Sum_probs=126.1

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--HHHHHHHHHHHHHHcCCHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~~~l~~~L~~ly~~~g~~~  116 (297)
                      +..|++++|+..|+++++.+|..+ .+...+|.++..+|++++|+..|++++...|.+.  .......|+.++.+.|+++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            456777778877877777654322 2344467777777888888887777777666431  0122333555667777888


Q ss_pred             HHHHHHHHHHHhhchh-------------hhhc--CcchhHHhhhhh------hHH--HhcCCCcHHHHHHHHHHHHHCC
Q 022442          117 EQIEMLKRKLRLIYQG-------------EAFN--GKPTKTARSHGK------KFQ--VSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       117 eAi~~~~~al~~~p~~-------------~~~~--~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      +|+..+++++...|+.             ....  ..........++      .+.  +...|+++.++.++|.++...|
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            8887777777765421             0000  000000000000      111  3556888999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+..++++++++|++.. .+.+|.++..+|++++|...+++++..
T Consensus       408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999999999998 889999999999999999999999997

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.67  E-value=1.1e-14  Score=127.40  Aligned_cols=185  Identities=15%  Similarity=0.035  Sum_probs=145.9

Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHH
Q 022442           28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDN  103 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~  103 (297)
                      ....++..+..++..|++++|+..|++++..+|+++   .++..+|.++.++|++++|+..|++++...|++... ...+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            344677788888899999999999999999999865   688999999999999999999999999999974321 2345


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442          104 VLIDLYKKC--------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus       104 ~L~~ly~~~--------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~  175 (297)
                      .+|.++...        |++++|+..|+++++..|.............         .+.........++|.+|..+|++
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~---------~~~~~~~~~~~~~a~~~~~~g~~  182 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD---------YLRNRLAGKELYVARFYLKRGAY  182 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHcCCh
Confidence            578888876        8999999999999999774321100000000         00011123446899999999999


Q ss_pred             HHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|+..|++++...|+++   . ++++|.++..+|++++|..+++.+...
T Consensus       183 ~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       183 VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999988754   5 889999999999999999998887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.66  E-value=1.2e-14  Score=144.62  Aligned_cols=147  Identities=14%  Similarity=0.082  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      +++.-.....+..|.+++++.+||.+..++|++++|...++.++.++|++.  .....++.++.+++++++|...+++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            344444444556788999999999999999999999999999999999854  344557889999999999999999999


Q ss_pred             HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442          127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~  205 (297)
                      ...                          |+++.+++.+|.++.++|++++|+.+|++++..+|+++. +.++|.++...
T Consensus       148 ~~~--------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        148 SGG--------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             hcC--------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            874                          567889999999999999999999999999999999998 99999999999


Q ss_pred             CCHHHHHHHHHHHHhc
Q 022442          206 TRYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g~~~eA~~~~~~al~~  221 (297)
                      |+.++|...|+++++.
T Consensus       202 G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        202 GALWRARDVLQAGLDA  217 (694)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999986

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.6e-14  Score=133.04  Aligned_cols=157  Identities=20%  Similarity=0.145  Sum_probs=136.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHH---HHHH-------------------------------HHHHHHHCCChHHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDS---ALKD-------------------------------MAVVMKQLDRSEEA   82 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~-------------------------------Lg~~l~~~g~~~eA   82 (297)
                      .+.....|+++|+..|+...+.+|-..+   .+.|                               +|+-|...+++++|
T Consensus       270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA  349 (559)
T KOG1155|consen  270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA  349 (559)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence            3455788999999999999998885211   1111                               56777888899999


Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442           83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  162 (297)
Q Consensus        83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l  162 (297)
                      +..|+++++++|+  ...++.+.|.=|..+++...|++.|++|++++|                          .+-++|
T Consensus       350 v~YFkRALkLNp~--~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--------------------------~DyRAW  401 (559)
T KOG1155|consen  350 VMYFKRALKLNPK--YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP--------------------------RDYRAW  401 (559)
T ss_pred             HHHHHHHHhcCcc--hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--------------------------hhHHHH
Confidence            9999999999998  345666789999999999999999999999876                          345799


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.||.+|.-++.+.=|+-+|++|+++.|++.. |..||.||.++++.++|+..|.+++..
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999 999999999999999999999999986

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.65  E-value=1.8e-14  Score=137.81  Aligned_cols=173  Identities=24%  Similarity=0.210  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc-
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-   96 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~-   96 (297)
                      +...+...+..+|+++.|+.+++.|++.        .|.....+..+|.+|..++++.+|+.+|++++.+-     +++ 
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            5555677788999999999999999997        67777778889999999999999999999987652     332 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      ......+.|+.+|...|+++||..++++|+++...         ...         ...|+-+..+.+++.++..+++++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~---------~~~---------~~~~~v~~~l~~~~~~~~~~~~~E  342 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK---------LLG---------ASHPEVAAQLSELAAILQSMNEYE  342 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH---------hhc---------cChHHHHHHHHHHHHHHHHhcchh
Confidence            22345577999999999999999999999999531         000         111234567899999999999999


Q ss_pred             HHHHHHHHHHHhC-----CCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          177 AAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       177 eA~~~y~~Al~~~-----P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+.+|++++++.     ++++   . ..|||.+|.++|+++||..+|++++..
T Consensus       343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~  396 (508)
T KOG1840|consen  343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI  396 (508)
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            9999999999863     4552   3 579999999999999999999999976

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.8e-14  Score=135.41  Aligned_cols=199  Identities=17%  Similarity=0.106  Sum_probs=163.2

Q ss_pred             hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHH
Q 022442           21 VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES  100 (297)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~  100 (297)
                      .+...|+...+.+..|-.++.-|+..+|..+|-|+..++|....+|...|..+...|..++|+.+|..|.++.|.-.. .
T Consensus       304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-P  382 (611)
T KOG1173|consen  304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-P  382 (611)
T ss_pred             HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-h
Confidence            344558888899999988888999999999999999999999999999999999999999999999999999997322 2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-c--Ccc---hhHHhhhhhhHH------HhcC---CCcHHHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF-N--GKP---TKTARSHGKKFQ------VSVR---QETSRLLGNL  165 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~-~--~~~---~~~~~~~~~~~~------~~l~---p~~~~~l~nL  165 (297)
                      . ..+|.-|.+.++++-|...|.+|+.+.|.+... +  |-.   .+........|+      .++.   +-+..+++||
T Consensus       383 ~-LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL  461 (611)
T KOG1173|consen  383 S-LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL  461 (611)
T ss_pred             H-HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence            2 337888999999999999999999999865322 1  100   000000001111      0111   2356679999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.+|..++++++|+.+|+++|.+.|.++. +..+|.+|..+|+++.|++.|.++|..
T Consensus       462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            99999999999999999999999999998 899999999999999999999999998

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=3.5e-14  Score=121.48  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=123.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      ...|+.-|+++....+.++..  +|..         -+...++.++++..+++++..+|++.  ..+..||.+|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCH
Confidence            345678899888766653221  2221         12236788999999999999999864  4556689999999999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCCC--hHHHHHHHHHHHHhCCCc
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTN--FMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g~--~~eA~~~y~~Al~~~P~~  192 (297)
                      ++|+.+|++++++.                          |+++.++.++|.++ ...|+  +++|..+++++++++|++
T Consensus        90 ~~A~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         90 DNALLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            99999999999984                          46778999999975 77788  599999999999999999


Q ss_pred             HH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442          193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  226 (297)
Q Consensus       193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~  226 (297)
                      +. +.+||.++..+|++++|+..|+++++..+++.
T Consensus       144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            98 99999999999999999999999999844433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.64  E-value=8.5e-15  Score=125.26  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH-HHHcCC--HHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGK--VEEQ  118 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l-y~~~g~--~~eA  118 (297)
                      .++.++++..++++++.+|++.++|..||.++...|++++|+.+|++++.+.|++.  .+...+|.+ +...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence            56778999999999999999999999999999999999999999999999999854  455557875 578888  5999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      +.++++++++.                          |+++.++++||.++.++|++++|+.+|+++++++|.+..
T Consensus       130 ~~~l~~al~~d--------------------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        130 REMIDKALALD--------------------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHHHhC--------------------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999985                          467789999999999999999999999999999998765

>TIGR00540 hemY_coli hemY protein

Probab=99.62  E-value=5.4e-14  Score=133.26  Aligned_cols=207  Identities=14%  Similarity=0.069  Sum_probs=156.3

Q ss_pred             hhhhhhhhhc-CCCCCc-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           15 KEDLFHVIHK-VPAGDG-PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        15 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      ..+.+....+ .|.+.. .......+++..|+++.|...+++.++..|+++.++..++.++.++|++++|++.++...+.
T Consensus       137 A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       137 ANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3344444444 344432 33334778889999999999999999999999999999999999999999999877765543


Q ss_pred             C--------------------------------------Ccc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442           93 C--------------------------------------SKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG  132 (297)
Q Consensus        93 ~--------------------------------------P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~  132 (297)
                      .                                      |..  ....+...++.++...|++++|+..++++++..|++
T Consensus       217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~  296 (409)
T TIGR00540       217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD  296 (409)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence            2                                      210  012344456788999999999999999999998865


Q ss_pred             hh-----hc--Ccch-hHHhhhhhhH--HHhcCCCcH--HHHHHHHHHHHHCCChHHHHHHHH--HHHHhCCCcHHHhHH
Q 022442          133 EA-----FN--GKPT-KTARSHGKKF--QVSVRQETS--RLLGNLAWAYMQKTNFMAAEVVYQ--KAQMIDPDANKACNL  198 (297)
Q Consensus       133 ~~-----~~--~~~~-~~~~~~~~~~--~~~l~p~~~--~~l~nLg~~y~~~g~~~eA~~~y~--~Al~~~P~~~~~~nL  198 (297)
                      ..     +.  .... .........+  .+...|+++  .++..+|+++.++|++++|.++|+  ++++.+|++.....|
T Consensus       297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence            41     11  0000 0000001112  157789999  899999999999999999999999  688899999886699


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q 022442          199 GLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       199 g~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.++.++|+.++|..+|++++..
T Consensus       377 a~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.61  E-value=5.2e-14  Score=119.66  Aligned_cols=134  Identities=19%  Similarity=0.168  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ..+...||.-|.++|++..|..-++++++.+|+..  ..+..++.+|.+.|..+.|-+.|++|+.+.|            
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p------------  100 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAP------------  100 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC------------
Confidence            35677899999999999999999999999999843  4556689999999999999999999999854            


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC---cHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~---~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                                    ++.++++|.|+.+..+|+|++|...|++|+. +|.   ... +.|+|.|-.++|+++.|...|+++
T Consensus       101 --------------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra  165 (250)
T COG3063         101 --------------NNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA  165 (250)
T ss_pred             --------------CccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence                          5667999999999999999999999999997 454   445 889999999999999999999999


Q ss_pred             HhcCCCC
Q 022442          219 LYGRIPG  225 (297)
Q Consensus       219 l~~~~~~  225 (297)
                      +...+..
T Consensus       166 L~~dp~~  172 (250)
T COG3063         166 LELDPQF  172 (250)
T ss_pred             HHhCcCC
Confidence            9984433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=8.7e-15  Score=131.54  Aligned_cols=226  Identities=22%  Similarity=0.193  Sum_probs=91.3

Q ss_pred             hhhhhhh----hcC-CCCCcHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442           16 EDLFHVI----HKV-PAGDGPYVR-AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF   89 (297)
Q Consensus        16 ~~~~~~~----~~~-~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a   89 (297)
                      ++++.++    .+. |+++..|++ .+.++...|+++.|+..|++.+..++..+..+..++.+ ...+++++|+..+++.
T Consensus        25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~  103 (280)
T PF13429_consen   25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKA  103 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            3445555    344 455556655 45677889999999999999999999999999899888 7999999999999988


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      .+..++  . ......+.++...|+++++...++++....+                        .|+++..+..+|.++
T Consensus       104 ~~~~~~--~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~a~~~  156 (280)
T PF13429_consen  104 YERDGD--P-RYLLSALQLYYRLGDYDEAEELLEKLEELPA------------------------APDSARFWLALAEIY  156 (280)
T ss_dssp             -----------------H-HHHTT-HHHHHHHHHHHHH-T---------------------------T-HHHHHHHHHHH
T ss_pred             cccccc--c-chhhHHHHHHHHHhHHHHHHHHHHHHHhccC------------------------CCCCHHHHHHHHHHH
Confidence            876654  1 2223356778999999999999999776421                        123566888899999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHH
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEEL  238 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~  238 (297)
                      .+.|++++|+.+|++|++++|+++. ...++.+++..|+++++..+++.+....+.++.          ...+.+.|.+.
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~  236 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY  236 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence            9999999999999999999999998 888999999999999988888777765322332          24556677777


Q ss_pred             HHHHHhcCC-CCchhhhhcccc--hhHHHHHHHH
Q 022442          239 LLELESKQP-PPDLSDLLGLNL--EDEFVNGLEE  269 (297)
Q Consensus       239 l~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~  269 (297)
                      +.......| ++.....|+-.+  .+++.++++-
T Consensus       237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~  270 (280)
T PF13429_consen  237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRL  270 (280)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            777765444 555555555544  4666555553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=1.8e-13  Score=129.31  Aligned_cols=209  Identities=15%  Similarity=0.149  Sum_probs=156.3

Q ss_pred             cchhhhhhhhhcCCCCCcHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           13 SKKEDLFHVIHKVPAGDGPY--VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ....+.|..+.+.+++....  ..+..+++..|++++|+..++++++.+|+++.++..++.+|.+.|++++|++.+.++.
T Consensus       135 ~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~  214 (398)
T PRK10747        135 ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA  214 (398)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34445566666654444322  3446788899999999999999999999999999999999999999999997776655


Q ss_pred             hhCCcch----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442           91 GLCSKQS----------------------------------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        91 ~~~P~~~----------------------------------------~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      +..+.+.                                        ...+...++..+...|+.++|...++++++..+
T Consensus       215 k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~  294 (398)
T PRK10747        215 KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY  294 (398)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            4332100                                        112334467888999999999999999999644


Q ss_pred             hhhhh--cCcc-hhHHhhhhhhH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHc
Q 022442          131 QGEAF--NGKP-TKTARSHGKKF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKR  205 (297)
Q Consensus       131 ~~~~~--~~~~-~~~~~~~~~~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~  205 (297)
                      .....  .+.. .......-...  .+...|+++..+..+|.++...|++++|..+|+++++.+|++..+..|+.++.++
T Consensus       295 ~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~  374 (398)
T PRK10747        295 DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL  374 (398)
T ss_pred             CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence            32211  1110 00000000111  1466799999999999999999999999999999999999998888999999999


Q ss_pred             CCHHHHHHHHHHHHhc
Q 022442          206 TRYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g~~~eA~~~~~~al~~  221 (297)
                      |+.++|..+|++.+..
T Consensus       375 g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        375 HKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=8.5e-14  Score=129.01  Aligned_cols=206  Identities=18%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      ..++-|....++ |.....|-.....+..+.+.++-...|.+|..+||.+++.++..|.++.-++++++|++-|++++.+
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344445444444 3333345555556666666666777777777777777777777777777777777777777777777


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-hhhc--C-cchhH--HhhhhhhHH--HhcCCC------c
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-EAFN--G-KPTKT--ARSHGKKFQ--VSVRQE------T  158 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-~~~~--~-~~~~~--~~~~~~~~~--~~l~p~------~  158 (297)
                      +|.++.  .+.-++.+..++++++++...|+.+++..|.- +.++  . .+++.  .....+.+.  +.++|.      +
T Consensus       424 ~pe~~~--~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~  501 (606)
T KOG0547|consen  424 DPENAY--AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN  501 (606)
T ss_pred             ChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence            776432  22234445556667777777777766665532 1111  0 00000  000001111  345555      4


Q ss_pred             HHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          159 SRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       159 ~~~l~nLg~~y~~-~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +..+.+-|.+..+ .+++..|+.++++|+++||.... ...||.+..++|+.++|+++|++++..
T Consensus       502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4445555544433 48999999999999999999998 889999999999999999999998875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.59  E-value=9.6e-14  Score=138.31  Aligned_cols=149  Identities=13%  Similarity=0.037  Sum_probs=136.0

Q ss_pred             hhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442           18 LFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS   97 (297)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~   97 (297)
                      +-..+++.|....+++.++.+....|++++|+.++++++++.|++..++.+++.++.+++++++|...+++++...|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            34556788888889999999999999999999999999999999999999999999999999999999999999999854


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHH
Q 022442           98 QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMA  177 (297)
Q Consensus        98 ~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~e  177 (297)
                        ...+.+|.++.+.|++++|+++|++++...                          |+++.++.++|.+++..|+.++
T Consensus       155 --~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~~  206 (694)
T PRK15179        155 --REILLEAKSWDEIGQSEQADACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALWR  206 (694)
T ss_pred             --HHHHHHHHHHHHhcchHHHHHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHHH
Confidence              466678999999999999999999999853                          4678899999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHH
Q 022442          178 AEVVYQKAQMIDPDANK  194 (297)
Q Consensus       178 A~~~y~~Al~~~P~~~~  194 (297)
                      |..+|++|++...+-..
T Consensus       207 A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        207 ARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             HHHHHHHHHHhhCcchH
Confidence            99999999998776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.58  E-value=1.6e-13  Score=118.73  Aligned_cols=171  Identities=15%  Similarity=0.171  Sum_probs=127.9

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      ..+.+.|.+... ......+...|+-+.+.....++....|.+.+.+..+|......|++.+|+..++++..+.|+++  
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--  134 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--  134 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--
Confidence            455555544444 44445555678877777777777777788887777788888888888888888888888888754  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ..++.+|.+|.+.|++++|-..|.+++++.|                          +.+.+.+|||..|.-.|+++.|.
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--------------------------~~p~~~nNlgms~~L~gd~~~A~  188 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALELAP--------------------------NEPSIANNLGMSLLLRGDLEDAE  188 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHHhcc--------------------------CCchhhhhHHHHHHHcCCHHHHH
Confidence            4566678888888888888888888888743                          34567788888888888888888


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      .++.++....+.+.. ..||+.+...+|++.+|..+-.+-+
T Consensus       189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            888888877776776 7788888888888888876654433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.57  E-value=2.6e-13  Score=138.07  Aligned_cols=164  Identities=12%  Similarity=0.098  Sum_probs=146.0

Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442           28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID  107 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~  107 (297)
                      .+.-..-...++.-.|+.++|+..+++++..+|..+.++..+|.++..+|++++|+..+++++.+.|.+.  .....++.
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            3333444566778899999999999999998999999999999999999999999999999999999854  34456888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      ++...|++++|+..++++++..                          |+++. +..+|.++...|++++|+..|+++++
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~--------------------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGA--------------------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--------------------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999874                          45677 89999999999999999999999999


Q ss_pred             hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      ++|+++. +..++.++...|+.++|+..++++..
T Consensus       145 ~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        145 RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            9999998 88999999999999999999986554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=2.5e-13  Score=108.36  Aligned_cols=117  Identities=14%  Similarity=0.001  Sum_probs=89.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      +.|++++..+|++..+.+.+|..+.+.|++++|+..++.++..+|.+.  .+...+|.+|...|++++|+..++++++..
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            357778888888888888888888888888888888888888888642  345557778888888888888888877764


Q ss_pred             chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                                |+++.++.++|.+|...|++++|+..|+++++++|++..
T Consensus        82 --------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        82 --------------------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             --------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence                                      345567778888888888888888888888888887765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.55  E-value=7.3e-13  Score=134.28  Aligned_cols=168  Identities=11%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |+.....+....+...+|+++.|+..|+++++.+|+++.+...+..++...|+.++|+..+++++  .|.+........+
T Consensus        31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llal  108 (822)
T PRK14574         31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASA  108 (822)
T ss_pred             ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHH
Confidence            44444455556667789999999999999999999997666699999999999999999999999  4432222334445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.+|..+|++++|+++|+++++..|                          +++.++..|+.+|.+.++.++|+..++++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP--------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l  162 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDP--------------------------TNPDLISGMIMTQADAGRGGVVLKQATEL  162 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence            7899999999999999999999865                          34555566666666666666666666666


Q ss_pred             HHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +..+|++.....++.++..+++..+|+..|++++..
T Consensus       163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            666666444433444444455665566666666665

>PLN02789 farnesyltranstransferase

Probab=99.55  E-value=1.4e-12  Score=119.20  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=134.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH--
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV--  115 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~--  115 (297)
                      ....++.++|+.++.++|.++|.+..+|+..|.++..+| ++++++..+++++..+|++.+  +.+..+.++.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--aW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--IWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--HhHHHHHHHHHcCchhh
Confidence            445678999999999999999999999999999999999 689999999999999998543  344467777888874  


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  194 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-  194 (297)
                      ++++.+++++++++                          |++..++.+.|+++..+|++++|++++.++|+.+|.|.. 
T Consensus       125 ~~el~~~~kal~~d--------------------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789        125 NKELEFTRKILSLD--------------------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            78899998988874                          456789999999999999999999999999999999998 


Q ss_pred             HhHHHHHHHHc---CCH----HHHHHHHHHHHhcC
Q 022442          195 ACNLGLCLIKR---TRY----NEARSVLEDVLYGR  222 (297)
Q Consensus       195 ~~nLg~~l~~~---g~~----~eA~~~~~~al~~~  222 (297)
                      |++.+.++...   |++    ++++.+..+++...
T Consensus       179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~  213 (320)
T PLN02789        179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN  213 (320)
T ss_pred             HHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence            99999998876   334    46788888999873

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.54  E-value=1.1e-12  Score=114.66  Aligned_cols=141  Identities=18%  Similarity=0.101  Sum_probs=120.5

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  136 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~  136 (297)
                      .++..++.++.+|..+...|++++|+..+++++..+|++.. ......+|.+|...|++++|+..|+++++..|..    
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----  103 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH----  103 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----
Confidence            34567889999999999999999999999999999997432 2345668999999999999999999999987621    


Q ss_pred             CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC--------CChHHHHHHHHHHHHhCCCcHH-H------------
Q 022442          137 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK--------TNFMAAEVVYQKAQMIDPDANK-A------------  195 (297)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~--------g~~~eA~~~y~~Al~~~P~~~~-~------------  195 (297)
                                         |..+.+++.+|.++.+.        |++++|+..|++++..+|++.. +            
T Consensus       104 -------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~  164 (235)
T TIGR03302       104 -------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR  164 (235)
T ss_pred             -------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence                               12334788999999887        8999999999999999999863 2            


Q ss_pred             -----hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 -----CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 -----~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                           ..+|.++..+|++.+|+..+++++..
T Consensus       165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       165 LAGKELYVARFYLKRGAYVAAINRFETVVEN  195 (235)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                 36789999999999999999999987

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.54  E-value=3.6e-13  Score=109.30  Aligned_cols=117  Identities=15%  Similarity=0.037  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ..+.+|..+...|++++|+.+|+-+..++                          |.+++.+++||.|+..+|+|.+|+.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--------------------------p~~~~y~~gLG~~~Q~~g~~~~AI~   90 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--------------------------AWSFDYWFRLGECCQAQKHWGEAIY   90 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHHhhHHHHHH
Confidence            34457888899999999999999988874                          4577899999999999999999999


Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  243 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~  243 (297)
                      +|.+|+.++|+++. ..|+|.|++..|+.+.|...|+.++......+.+..-.++|..+|..+.
T Consensus        91 aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363         91 AYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence            99999999999998 9999999999999999999999999863222344444566777777663

>PLN02789 farnesyltranstransferase

Probab=99.52  E-value=2.3e-12  Score=117.86  Aligned_cols=195  Identities=13%  Similarity=0.025  Sum_probs=151.6

Q ss_pred             chhhhhhh-hhcCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCh--HHHHHHHHHH
Q 022442           14 KKEDLFHV-IHKVPAGDGPYVRAKHAQLVQK-DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSF   89 (297)
Q Consensus        14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~--~eAi~~~~~a   89 (297)
                      +.-+++.. +...|...++...-+.+....| ++++++.++.+++..+|++..+|++.+.++...|+.  +++++.++++
T Consensus        55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka  134 (320)
T PLN02789         55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI  134 (320)
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence            33344433 4444655556555555555556 689999999999999999999999999999999984  7889999999


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      +..+|++.  .+++..+.++...|++++|++.+.++|+++|                          .+..++++.|.++
T Consensus       135 l~~dpkNy--~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--------------------------~N~sAW~~R~~vl  186 (320)
T PLN02789        135 LSLDAKNY--HAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--------------------------RNNSAWNQRYFVI  186 (320)
T ss_pred             HHhCcccH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--------------------------CchhHHHHHHHHH
Confidence            99999853  3445578889999999999999999999854                          4667899999998


Q ss_pred             HHC---CCh----HHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHH
Q 022442          170 MQK---TNF----MAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEE  237 (297)
Q Consensus       170 ~~~---g~~----~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~  237 (297)
                      ..+   |++    ++++.+..+++.++|+|.. |..++.++..    +++..+|+..+.+++..   .+...    .|.+
T Consensus       187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~----~al~  259 (320)
T PLN02789        187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHV----FALS  259 (320)
T ss_pred             HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcH----HHHH
Confidence            876   334    4788888999999999998 9999999988    46678899999888774   22222    2556


Q ss_pred             HHHHHH
Q 022442          238 LLLELE  243 (297)
Q Consensus       238 ~l~~~~  243 (297)
                      .|.++-
T Consensus       260 ~l~d~~  265 (320)
T PLN02789        260 DLLDLL  265 (320)
T ss_pred             HHHHHH
Confidence            666553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.50  E-value=8.9e-13  Score=105.11  Aligned_cols=110  Identities=20%  Similarity=0.169  Sum_probs=99.5

Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  163 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~  163 (297)
                      +.+++++..+|++.  .....+|..+...|++++|+..+++++.+.                          |+++.++.
T Consensus         4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~   55 (135)
T TIGR02552         4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWL   55 (135)
T ss_pred             hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHH
Confidence            46788999999843  445568899999999999999999998874                          45678999


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++|.+|..+|++++|+.+|+++++++|+++. ++++|.++...|++++|+..+++++..
T Consensus        56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 999999999999999999999999997

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=6e-12  Score=114.87  Aligned_cols=213  Identities=18%  Similarity=0.160  Sum_probs=171.1

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      .+.+-.+.+.+..++++.|+.+-+|+|+.+|++..++..-|.++.++||.++|+-+|+.+..+.|-+  ...+--|...|
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r--L~~Y~GL~hsY  378 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR--LEIYRGLFHSY  378 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh--HHHHHHHHHHH
Confidence            3444455566678999999999999999999999999999999999999999999999999999963  23444477899


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhh-h--cCc----chhHHhhhhhhHH---HhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEA-F--NGK----PTKTARSHGKKFQ---VSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~-~--~~~----~~~~~~~~~~~~~---~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ...|++.||...-+.+++..|.++- .  .|.    .....+.-.++|.   +.++|....+.+-++..+...|++++++
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence            9999999999999999998775421 1  110    0111111122333   6889999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCCCch
Q 022442          180 VVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDL  251 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~  251 (297)
                      ..++++|...||..-+..||.++...+.+.+|.+.|..++..   +|.+..    +.+=++.+++...++++
T Consensus       459 ~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~~----sl~Gl~~lEK~~~~~DA  523 (564)
T KOG1174|consen  459 KLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSKR----TLRGLRLLEKSDDESDA  523 (564)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CccchH----HHHHHHHHHhccCCCCc
Confidence            999999999999999999999999999999999999999997   554433    55556666655545444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.8e-12  Score=120.32  Aligned_cols=184  Identities=15%  Similarity=0.108  Sum_probs=127.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      |-.++..|+.-.|-..+.++|.++|.+...+..+|.+|.+.++.++-...|.++..++|.++  .++..-|.+++-++++
T Consensus       333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQm~flL~q~  410 (606)
T KOG0547|consen  333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQMRFLLQQY  410 (606)
T ss_pred             hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999854  4666678999999999


Q ss_pred             HHHHHHHHHHHHhhchhh-hhcCc---chhH--HhhhhhhHHH--hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          116 EEQIEMLKRKLRLIYQGE-AFNGK---PTKT--ARSHGKKFQV--SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~-~~~~~---~~~~--~~~~~~~~~~--~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      ++|+.-|++++.++|... ++...   ..+.  .......|.-  .-=|+.+++++-.|.++..+++|+.|++.|.+|++
T Consensus       411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999999999999977432 11100   0000  0011112221  11155566666666666666666666666666666


Q ss_pred             hCCC------cHH-HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442          188 IDPD------ANK-ACNLGLCLI-KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       188 ~~P~------~~~-~~nLg~~l~-~~g~~~eA~~~~~~al~~  221 (297)
                      +.|+      ++. +.+-|.+.. =.+++.+|+.+++++++.
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~  532 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL  532 (606)
T ss_pred             hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence            6666      443 333222211 125666666666666665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.47  E-value=8e-12  Score=108.21  Aligned_cols=150  Identities=18%  Similarity=0.182  Sum_probs=133.4

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML  122 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~  122 (297)
                      .+...+...+-+....+|++.++ .+++..+...|+-+.+..+.......+|.+.  .+...+|....+.|++.+|+..+
T Consensus        47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~  123 (257)
T COG5010          47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVL  123 (257)
T ss_pred             HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHH
Confidence            34444666666778889999999 9999999999999999999999888888743  35555788889999999999999


Q ss_pred             HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                      +++..+.|                          ++.++++-+|.+|.+.|++++|...|.+++++.|+.+. ..|||..
T Consensus       124 rkA~~l~p--------------------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms  177 (257)
T COG5010         124 RKAARLAP--------------------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS  177 (257)
T ss_pred             HHHhccCC--------------------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence            99998854                          56789999999999999999999999999999999998 9999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhc
Q 022442          202 LIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       202 l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.-.|+++.|..++..+...
T Consensus       178 ~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         178 LLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             HHHcCCHHHHHHHHHHHHhC
Confidence            99999999999999999886

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.46  E-value=5.1e-12  Score=116.80  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=124.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      +..+...|++++|+..+++++..+|++..++.. +..+...    |+.+.+...++......|..  .....++|.++..
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~  126 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHH
Confidence            445678999999999999999999999887775 5555444    44555555554433344442  2334457889999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      +|++++|+..+++++++.|                          +++.++..+|.+|.+.|++++|+.++++++...|.
T Consensus       127 ~G~~~~A~~~~~~al~~~p--------------------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         127 AGQYDRAEEAARRALELNP--------------------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCC--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            9999999999999999854                          45668899999999999999999999999999875


Q ss_pred             cH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          192 AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       192 ~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++    . +.++|.++..+|++++|+..|++++..
T Consensus       181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            43    2 457999999999999999999998764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3e-12  Score=120.62  Aligned_cols=162  Identities=19%  Similarity=0.180  Sum_probs=134.2

Q ss_pred             chhhhhhhh-hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFHVI-HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      |.=.+|... .-+|..-.|+...|.-+...+.+.-|..+|.+|+.+.|++|-.++.+|++....+.|.+|+..|+.++..
T Consensus       364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~  443 (611)
T KOG1173|consen  364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV  443 (611)
T ss_pred             HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence            333455444 4446566688888888888999999999999999999999999999999999999999999999988743


Q ss_pred             CC----cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442           93 CS----KQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW  167 (297)
Q Consensus        93 ~P----~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~  167 (297)
                      -+    .. .|....++||.+|++++++++||..|+++|.+.|                          .+++++..+|.
T Consensus       444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--------------------------k~~~~~asig~  497 (611)
T KOG1173|consen  444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP--------------------------KDASTHASIGY  497 (611)
T ss_pred             hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC--------------------------CchhHHHHHHH
Confidence            33    21 2456677899999999999999999999999854                          57789999999


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                      +|.-+|+++.|+.+|.+||.++|++.. -.-|+.+
T Consensus       498 iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  498 IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            999999999999999999999999975 4444543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=1.8e-12  Score=114.29  Aligned_cols=129  Identities=20%  Similarity=0.222  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ++-+..-|.-+.+.++|.+|+..|.++|.++|.++  .++.+-+.+|.++|.++.|++-.+.+|.++|            
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------------  146 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDP------------  146 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------------
Confidence            45577789999999999999999999999999854  4565678899999999999999999999854            


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHH---HHHHHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYN---EARSVLEDV  218 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~---eA~~~~~~a  218 (297)
                                    .+..+|..||.+|..+|++.+|++.|++||+++|+|.. +.+|..+-.+++..+   .+...++-+
T Consensus       147 --------------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~  212 (304)
T KOG0553|consen  147 --------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA  212 (304)
T ss_pred             --------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence                          45678999999999999999999999999999999998 888888877776655   444444433


Q ss_pred             H
Q 022442          219 L  219 (297)
Q Consensus       219 l  219 (297)
                      .
T Consensus       213 ~  213 (304)
T KOG0553|consen  213 G  213 (304)
T ss_pred             h
Confidence            3

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.42  E-value=2.9e-11  Score=111.80  Aligned_cols=171  Identities=15%  Similarity=0.019  Sum_probs=125.0

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN  103 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~  103 (297)
                      +-..+++.++.++...|+.+.|...+.++.+..|.   ..+..+..|.++...|++++|++.+++++..+|++.  ....
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~   81 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LALK   81 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHH
Confidence            33446666777777778888888888877776553   345666778888888888888888888888888743  1222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      . +..+...|++..+.....+++....                      ...|+...++..+|.++..+|++++|+..++
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  138 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWA----------------------PENPDYWYLLGMLAFGLEEAGQYDRAEEAAR  138 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccC----------------------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1 3333444444444443334333210                      1134556678899999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++++++|+++. +..+|.++...|++++|+.++++++...
T Consensus       139 ~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         139 RALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            99999999998 8899999999999999999999999864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=1.2e-11  Score=118.69  Aligned_cols=173  Identities=23%  Similarity=0.278  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---C--cc-
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---S--KQ-   96 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P--~~-   96 (297)
                      ++.++..++...|++++|..++++|+.+        .|..+..+.+++.++..++++++|+.++++++++.   |  ++ 
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence            4667777889999999999999999974        45567778999999999999999999999887643   2  22 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      ........||.+|..+|+++||.+.|+++|.+.....             ++.     .+.....+++||..|.+.+++.
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-------------~~~-----~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-------------GKK-----DYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-------------cCc-----ChhhhHHHHHHHHHHHHhcccc
Confidence            1234557799999999999999999999999842100             000     0112347899999999999999


Q ss_pred             HHHHHHHHHHHh----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          177 AAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       177 eA~~~y~~Al~~----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|...|.++..+    .|+++   . ..||+.+|..+|++++|+.+.++++..
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            999999999976    35554   3 679999999999999999999998853

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=1.6e-11  Score=113.20  Aligned_cols=181  Identities=19%  Similarity=0.251  Sum_probs=124.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ....||+++|...|+.|+..+..-.++++++|..+..+|+.++|++.|-++-.+--+++  .+..-++++|..+.+...|
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhhCHHHH
Confidence            44568888888888888888888888888888888888888888888776544333322  3444477888888888888


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhh---HH-----HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKK---FQ-----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---~~-----~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      |+.|-++..+.|.+.+...++..+....+++   |+     ...=|-+-.+.--||..|....=+++|+.+|++|--+.|
T Consensus       578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            8888888888775544322222222222222   22     122245555666677777777777888888888877788


Q ss_pred             CcHHH-hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANKA-CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~~-~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +...| ..++.|+.+.|+|..|.+.|+.+-..
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            77774 45677888888888888888776654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.37  E-value=9.5e-12  Score=123.25  Aligned_cols=176  Identities=15%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             hhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           17 DLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        17 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      +.| .++..+|+=-.+|.+++-++...+...+|..++..++..+..++.++..+|..+.....+.-|-+-|+..++.-..
T Consensus       517 e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~  596 (1018)
T KOG2002|consen  517 EMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST  596 (1018)
T ss_pred             HHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence            444 4444445444455555544545556666666666666666666666666666666666666665544443322111


Q ss_pred             --chHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           96 --QSQESLDNVLIDLYKK------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        96 --~~~~~l~~~L~~ly~~------------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                        ++.  ....||++|++            .+.+++|+++|.++|+..|                          .+..+
T Consensus       597 ~~D~Y--sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--------------------------kN~yA  648 (1018)
T KOG2002|consen  597 KTDAY--SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--------------------------KNMYA  648 (1018)
T ss_pred             CCchh--HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--------------------------chhhh
Confidence              111  11123443332            2445555666666555544                          34444


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      -+.+|.|+...|++.+|..+|.++.+.--++.+ |.|||.||..+|+|-.|+++|+.++.
T Consensus       649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk  708 (1018)
T KOG2002|consen  649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK  708 (1018)
T ss_pred             ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555444554 55555555555555555555555554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.36  E-value=2.4e-11  Score=98.69  Aligned_cols=109  Identities=11%  Similarity=-0.030  Sum_probs=94.3

Q ss_pred             HcC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442           57 NAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF  135 (297)
Q Consensus        57 ~~~-p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~  135 (297)
                      ... ++.-+.++.+|..+.+.|++++|+..|+-+..++|.++  ..+..||.++..+|++.+||.+|.+++.+.      
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------   99 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIK------   99 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            355 66677889999999999999999999999999999753  344558999999999999999999999874      


Q ss_pred             cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                          |+++..+.|+|.||...|+.+.|.++|+.|+..--+++
T Consensus       100 --------------------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        100 --------------------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             --------------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence                                56888999999999999999999999999998864444

>TIGR00540 hemY_coli hemY protein

Probab=99.36  E-value=4.2e-10  Score=106.71  Aligned_cols=244  Identities=9%  Similarity=0.015  Sum_probs=167.3

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV  104 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~  104 (297)
                      |.....+.-+..++...|+++.|..++.++.+..|+.. .+....+.++.+.|++++|.+.+++.++..|+++  .+...
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~--~~l~l  192 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK--EVLKL  192 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence            33333455667788889999999999999999888875 4555579999999999999999999999999864  45666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhc-hhhhhc--------CcchhHHhhhh-hhHH--HhcCC----CcHHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIY-QGEAFN--------GKPTKTARSHG-KKFQ--VSVRQ----ETSRLLGNLAWA  168 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p-~~~~~~--------~~~~~~~~~~~-~~~~--~~l~p----~~~~~l~nLg~~  168 (297)
                      ++.+|.+.|++++|+..+.+.++... ++..+.        +.........+ ..+.  ..-.|    +++.++..+|..
T Consensus       193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~  272 (409)
T TIGR00540       193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH  272 (409)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence            89999999999999999999997632 111110        00000000000 0111  12234    578899999999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-H--hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--c----------chhhHH
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-A--CNLGLCLIKRTRYNEARSVLEDVLYGRIPGC--E----------DGRTRK  233 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~--~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~--~----------~~~~~~  233 (297)
                      +...|++++|+..++++++..|++.. .  .-........++.+.++..+++++...|.++  .          ..+.++
T Consensus       273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~  352 (409)
T TIGR00540       273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI  352 (409)
T ss_pred             HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence            99999999999999999999999885 2  2223334455788889999999988755444  2          245666


Q ss_pred             HHHHHHHH--HHhcCCCCchhhhhcccc-----hhHHHHHHHHHH
Q 022442          234 RAEELLLE--LESKQPPPDLSDLLGLNL-----EDEFVNGLEEMV  271 (297)
Q Consensus       234 ~a~~~l~~--~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~l  271 (297)
                      .|.+.++.  .....|++.....+|..+     .++..+-|.+-+
T Consensus       353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777773  222334433333444433     255555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.35  E-value=2.3e-10  Score=116.33  Aligned_cols=181  Identities=11%  Similarity=-0.010  Sum_probs=142.5

Q ss_pred             ccccccchhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHH
Q 022442            8 KKIFSSKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI   86 (297)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~   86 (297)
                      ++|.....-+.|..+.+. |..+.+......++...|+.++|+.++++++.-.|.....+..+|.++..+|++++|+++|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445455666777555544 5543333366667778899999999999999544555666666688999999999999999


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442           87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus        87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg  166 (297)
                      +++++.+|+++  .+...++.+|...|+.++|+..+++++...|.                          +. .+..++
T Consensus       126 ~kaL~~dP~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--------------------------~~-~~l~la  176 (822)
T PRK14574        126 QSSLKKDPTNP--DLISGMIMTQADAGRGGVVLKQATELAERDPT--------------------------VQ-NYMTLS  176 (822)
T ss_pred             HHHHhhCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--------------------------hH-HHHHHH
Confidence            99999999864  34445689999999999999999999988651                          11 124456


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      .++..++++.+|+..|+++++.+|++.. ...+..++...|-..-|++...+
T Consensus       177 yL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        177 YLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            6666788888899999999999999999 88999999999999999877764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=2.2e-10  Score=102.67  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      ...+|.-.+..|++..|+.-|..|+..+|++-.+++.-|.+|..+|+..-|+.-+.+++.+-|+..  ....--|.++.+
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQRg~vllK  118 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHHhchhhhh
Confidence            445666677899999999999999999999999999999999999999999999999999999843  233345788999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcC---c---------chhHHh------hhhhh-----HHHhcCCCcHHHHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNG---K---------PTKTAR------SHGKK-----FQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~---~---------~~~~~~------~~~~~-----~~~~l~p~~~~~l~nLg~~  168 (297)
                      +|.+++|++-|+++|.-.|.......   .         +.....      ++...     -.+++.|=++..+...+.|
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC  198 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            99999999999999998773211100   0         000000      00111     1157778888889999999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCED  228 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~  228 (297)
                      |...|+...||.-++.|-++..|+.. ++.++.++...|+.+.++...++.|..   +|++
T Consensus       199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdH  256 (504)
T KOG0624|consen  199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDH  256 (504)
T ss_pred             HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccch
Confidence            99999999999999999999999998 999999999999999999999999998   5554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.33  E-value=7.5e-10  Score=104.63  Aligned_cols=199  Identities=9%  Similarity=0.036  Sum_probs=135.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      ...+...|+++.|..+|.++.+.+|+...+. ...+.++..+|++++|++.+++..+..|++.  .+...++.+|.+.|+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~--~al~ll~~~~~~~gd  202 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP--EVLRLAEQAYIRTGA  202 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHh
Confidence            4555788888888888888888888875333 3448888888999999998888888888743  455567888888899


Q ss_pred             HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh-----hHH--H--------------------hcCCCcHHHHHHHHH
Q 022442          115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK-----KFQ--V--------------------SVRQETSRLLGNLAW  167 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----~~~--~--------------------~l~p~~~~~l~nLg~  167 (297)
                      +++|+.++.+..+...           .......     .+.  +                    .-.|+++.++..++.
T Consensus       203 w~~a~~~l~~l~k~~~-----------~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~  271 (398)
T PRK10747        203 WSSLLDILPSMAKAHV-----------GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE  271 (398)
T ss_pred             HHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence            9888888888777532           0011111     000  0                    122457777888888


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHH
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAE  236 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~  236 (297)
                      .+...|+.++|....+++++..| ++. ..-.+.+  ..|+.++++...++++...|.++.          ..+.++.|.
T Consensus       272 ~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~  348 (398)
T PRK10747        272 HLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS  348 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            88888888888888888888443 443 3333333  348888888888888876433332          245566777


Q ss_pred             HHHHHHHhcCCCCc
Q 022442          237 ELLLELESKQPPPD  250 (297)
Q Consensus       237 ~~l~~~~~~~~~~~  250 (297)
                      +.++......|+..
T Consensus       349 ~~le~al~~~P~~~  362 (398)
T PRK10747        349 LAFRAALKQRPDAY  362 (398)
T ss_pred             HHHHHHHhcCCCHH
Confidence            77777765555433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=3.8e-10  Score=106.05  Aligned_cols=190  Identities=19%  Similarity=0.145  Sum_probs=147.8

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHH-HH---HH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQE-SL---DN  103 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~-~l---~~  103 (297)
                      ......+|.....+.+++.|++.|.+++.++ .+..-+++.+.+|...|.+.+.+..+..+++.+-.. ... .+   ..
T Consensus       224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            3457778888899999999999999999999 888889999999999999999999999888776531 000 11   12


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh--HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      .+|..|.+.++++.|+..|.++|.-.-.....+.  .+......+.  -...++|+-+.--.+-|..++..|+|.+|+.+
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~--lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK--LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence            2567899999999999999998875311111110  0000000000  11356677777777789999999999999999


Q ss_pred             HHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          182 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       182 y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.+|+..+|+++. +.|.|.||.++|.+.+|+.-.+.+++.
T Consensus       381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            9999999999999 889999999999999999999999998

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.31  E-value=8.2e-11  Score=116.73  Aligned_cols=201  Identities=16%  Similarity=0.142  Sum_probs=150.6

Q ss_pred             hhhhcCCCC---CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           20 HVIHKVPAG---DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        20 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      |+++.+-+.   ...|+..+..+...|++++|-.+|.++++.+|++ .-+++.||.+++..|++++|+..|++++...|+
T Consensus       295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~  374 (1018)
T KOG2002|consen  295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN  374 (1018)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence            455555322   2358889999999999999999999999999887 667888999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhchh-hhhcC--------cchhHHhhhhhhH---HHhcCCCcH
Q 022442           96 QSQESLDNVLIDLYKKCG----KVEEQIEMLKRKLRLIYQG-EAFNG--------KPTKTARSHGKKF---QVSVRQETS  159 (297)
Q Consensus        96 ~~~~~l~~~L~~ly~~~g----~~~eAi~~~~~al~~~p~~-~~~~~--------~~~~~~~~~~~~~---~~~l~p~~~  159 (297)
                      .  .....+||.+|...+    .-+.|..+..++++..|.+ .++..        .........+...   .-.-.+=.+
T Consensus       375 ~--~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~  452 (1018)
T KOG2002|consen  375 N--YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP  452 (1018)
T ss_pred             h--HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence            4  245566899988776    6789999999999987643 22210        0000000001110   001122246


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcH-----H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~-----~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .+++|+|..++.+|.+++|..+|.+|+..     +++..     . .+|||.++...++++.|...|..++...
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            78999999999999999999999999976     34432     3 6899999999999999999999999863

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=4.4e-11  Score=106.54  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=160.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC
Q 022442           34 RAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG  113 (297)
Q Consensus        34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g  113 (297)
                      +.+.+++.-|-+.+|.+.++.+++..|. ++.+..|+.+|...++...|+..|...++..|.+.  ....-.+.++..++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHHH
Confidence            4577889999999999999999997765 67788999999999999999999999999999843  33334578999999


Q ss_pred             CHHHHHHHHHHHHHhhchhh-hh--------c-CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          114 KVEEQIEMLKRKLRLIYQGE-AF--------N-GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~-~~--------~-~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ++++|.++|+.++++.|... +.        . +++.-..+...+.+  .+--.++..+.|+|.|++-.+.+|-++..|+
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL--qmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL--QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH--HhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            99999999999999976431 11        1 11111111111122  2233577899999999999999999999999


Q ss_pred             HHHHhC--CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHHHHHHHhcCCC-
Q 022442          184 KAQMID--PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLLELESKQPP-  248 (297)
Q Consensus       184 ~Al~~~--P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~l~~~~~~~~~-  248 (297)
                      +|+...  |+.. + |+|||.+....|++.-|...|+-++...+....          .......|..++....+..|+ 
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            999864  5544 5 999999999999999999999999986221111          123344566666655554444 


Q ss_pred             Cchhhhhc
Q 022442          249 PDLSDLLG  256 (297)
Q Consensus       249 ~~~~~~~~  256 (297)
                      .+...|++
T Consensus       463 ~E~~~Nl~  470 (478)
T KOG1129|consen  463 AEVTTNLQ  470 (478)
T ss_pred             ccccccee
Confidence            33334443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.4e-09  Score=96.89  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=158.2

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHH
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      +.-|+|-.+.+. |..-.+...+|.++-..|..|.||..-+..+. .|+.     .-++..||.-|...|-+|.|..+|.
T Consensus        53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~  131 (389)
T COG2956          53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN  131 (389)
T ss_pred             hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            456788444444 66667899999999999999999998865544 5653     3478899999999999999999999


Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-----hhcCcchhH--Hhh-hhh---h--HHHhc
Q 022442           88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-----AFNGKPTKT--ARS-HGK---K--FQVSV  154 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-----~~~~~~~~~--~~~-~~~---~--~~~~l  154 (297)
                      .+.+. |..+. ...-.|..+|.+..++++||++-++.+++.+...     .|...+...  ..+ ..+   .  -.+..
T Consensus       132 ~L~de-~efa~-~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa  209 (389)
T COG2956         132 QLVDE-GEFAE-GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA  209 (389)
T ss_pred             HHhcc-hhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence            88764 33333 3334477899999999999999999999866431     111100000  000 001   0  11567


Q ss_pred             CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|...++-..||.++...|+|..|++.++++++.||+...  .-.|..||..+|+.++.+..+.+..+.
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8888999999999999999999999999999999999986  567999999999999999999999986

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.30  E-value=7.8e-10  Score=109.20  Aligned_cols=209  Identities=21%  Similarity=0.167  Sum_probs=158.0

Q ss_pred             ccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           12 SSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ....++.+. ++..-|..+.||..++.++-..||.+++..+.-.|..++|++.+-|..++....++|.+.+|+-+|.+++
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI  234 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI  234 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344455553 4445588888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-------------hc--C------------------
Q 022442           91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-------------FN--G------------------  137 (297)
Q Consensus        91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-------------~~--~------------------  137 (297)
                      +.+|.++.  +...-+.+|.+.|++..|...|.+++.+.|+...             +.  +                  
T Consensus       235 ~~~p~n~~--~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~  312 (895)
T KOG2076|consen  235 QANPSNWE--LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD  312 (895)
T ss_pred             hcCCcchH--HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence            99998643  3333578899999999999999999988772100             00  0                  


Q ss_pred             c----------------------chhH--Hhh-------------------------hhh-------h------------
Q 022442          138 K----------------------PTKT--ARS-------------------------HGK-------K------------  149 (297)
Q Consensus       138 ~----------------------~~~~--~~~-------------------------~~~-------~------------  149 (297)
                      .                      ...+  ...                         .++       .            
T Consensus       313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~  392 (895)
T KOG2076|consen  313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE  392 (895)
T ss_pred             cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc
Confidence            0                      0000  000                         000       0            


Q ss_pred             ---------HHHhcC--C-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHH
Q 022442          150 ---------FQVSVR--Q-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVL  215 (297)
Q Consensus       150 ---------~~~~l~--p-~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~  215 (297)
                               +...-+  | +..+.+..++.+|.+.|+|.+|+.+|-.++...+.+. . |+++|.||..+|.+++|+..|
T Consensus       393 ~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y  472 (895)
T KOG2076|consen  393 RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFY  472 (895)
T ss_pred             cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence                     000000  1 3456788999999999999999999999998888766 4 999999999999999999999


Q ss_pred             HHHHhcC
Q 022442          216 EDVLYGR  222 (297)
Q Consensus       216 ~~al~~~  222 (297)
                      ++++...
T Consensus       473 ~kvl~~~  479 (895)
T KOG2076|consen  473 EKVLILA  479 (895)
T ss_pred             HHHHhcC
Confidence            9999873

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.30  E-value=7e-11  Score=109.97  Aligned_cols=112  Identities=16%  Similarity=0.099  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      +...|..+...|++++|+..|++++.++|++.  .++..+|.+|...|++++|+..+++++.+.|               
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------   67 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDP---------------   67 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------
Confidence            44567777788888888888888888888743  3555578888888888888888888888743               


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~  205 (297)
                                 +++.+++++|.+|..+|+|++|+.+|++++.++|++.. ...++.|...+
T Consensus        68 -----------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         68 -----------SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             -----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                       45667888899999999999999999999999998887 66666665444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=4.6e-11  Score=105.40  Aligned_cols=111  Identities=22%  Similarity=0.144  Sum_probs=96.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      -+...+++.+|+..|.+||+++|+++-.+-+-+.+|.++|.++.|++-++.++.++|..  ...+..||.+|..+|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHHH
Confidence            35678999999999999999999999999999999999999999999999999999974  3455568999999999999


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      |++.|+++|++.|                          +++....+|.++-..++...
T Consensus       168 A~~aykKaLeldP--------------------------~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  168 AIEAYKKALELDP--------------------------DNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHhhhccCC--------------------------CcHHHHHHHHHHHHHhcCCC
Confidence            9999999999855                          45556677777776666655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.29  E-value=1.2e-10  Score=96.76  Aligned_cols=126  Identities=10%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ++.+..+...+...++..+..  ..+++++|.++..+|++++|+..|++++.+.|+.. ....+..+|.+|...|++++|
T Consensus        12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA   91 (168)
T CHL00033         12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA   91 (168)
T ss_pred             ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence            444556666665555555544  66789999999999999999999999998877521 123556689999999999999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH-------HCCChH-------HHHHHHHH
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-------QKTNFM-------AAEVVYQK  184 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~-------~~g~~~-------eA~~~y~~  184 (297)
                      +..|++++.+.|                          .....+.++|.+|.       .+|+++       +|+.+|++
T Consensus        92 ~~~~~~Al~~~~--------------------------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033         92 LEYYFQALERNP--------------------------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             HHHHHHHHHhCc--------------------------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            999999998854                          23344555555555       777766       66677777


Q ss_pred             HHHhCCCcH
Q 022442          185 AQMIDPDAN  193 (297)
Q Consensus       185 Al~~~P~~~  193 (297)
                      ++..+|++.
T Consensus       146 a~~~~p~~~  154 (168)
T CHL00033        146 AIALAPGNY  154 (168)
T ss_pred             HHHhCcccH
Confidence            778888765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.26  E-value=7.1e-10  Score=109.49  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=135.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ....|++++|+..+..+|+.+|.++.+|+.||.+|-++|+.+++....-.+..++|++.  ..+..++++..++|.++.|
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHH
Confidence            44569999999999999999999999999999999999999999999999999999865  4555689999999999999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-----
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-----  193 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-----  193 (297)
                      +-+|.+||+.+|+                          +-........+|.++|++..|...|++++.+.|...     
T Consensus       227 ~~cy~rAI~~~p~--------------------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~  280 (895)
T KOG2076|consen  227 RYCYSRAIQANPS--------------------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE  280 (895)
T ss_pred             HHHHHHHHhcCCc--------------------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence            9999999999662                          334677889999999999999999999999999322     


Q ss_pred             H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          194 K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       194 ~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      + ....+..+...++.+.|+..++.++..
T Consensus       281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  281 DLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            1 345678888999889999999999883

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=3.7e-11  Score=106.97  Aligned_cols=198  Identities=14%  Similarity=0.119  Sum_probs=154.1

Q ss_pred             hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHH
Q 022442           21 VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQES  100 (297)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~  100 (297)
                      .++.- +.+..|.-+..++..-.++..|+..|.+.+...|.+...+..++.++-.++++++|+++|+.+++.+|.+.  .
T Consensus       249 sL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv--E  325 (478)
T KOG1129|consen  249 SLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV--E  325 (478)
T ss_pred             HhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc--e
Confidence            34443 46777888888888889999999999999999999998899999999999999999999999999999743  2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-hhhhhcCcch------hH---HhhhhhhHHHhcCCC-cHHHHHHHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIY-QGEAFNGKPT------KT---ARSHGKKFQVSVRQE-TSRLLGNLAWAY  169 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~~------~~---~~~~~~~~~~~l~p~-~~~~l~nLg~~y  169 (297)
                      .....+.-|+-.|+.+-|+..|++.|.+-- .+..|++...      ..   ..+..+.....-+|+ -+++|+|||.+.
T Consensus       326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             eeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            222356667888999999999999998732 1233321100      00   000001111122233 468999999999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ...|++.-|..+|+-||.-+|++.. +.|||.+-.+.|+.++|..++..+-..
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            9999999999999999999999998 999999999999999999999988876

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=1.5e-09  Score=101.24  Aligned_cols=134  Identities=18%  Similarity=0.065  Sum_probs=119.9

Q ss_pred             CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      |....+++..+..+...|.+++|...++.+++..|+++  .+....++++.+.|+.++|++.+++++.+.|         
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P---------  371 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDP---------  371 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---------
Confidence            78888999999999999999999999999999999854  3455678999999999999999999999865         


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                                       +.+.+..++|.+|.+.|++.+|+..+.+.+.-+|+++. |.-|+.+|..+|+..+|...+-+.
T Consensus       372 -----------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         372 -----------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             -----------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence                             34557889999999999999999999999999999998 999999999999999999888877


Q ss_pred             Hhc
Q 022442          219 LYG  221 (297)
Q Consensus       219 l~~  221 (297)
                      ...
T Consensus       435 ~~~  437 (484)
T COG4783         435 YAL  437 (484)
T ss_pred             HHh
Confidence            764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.25  E-value=2.6e-10  Score=95.26  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      ....+++++|..+...|++++|+..|++++...|+... ......+|.+|...|++++|+..|++++...|         
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------  103 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---------  103 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------
Confidence            45566788888888888888888888888877665211 23455678888888888888888888887643         


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHHhCCCc
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN--------------FMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~--------------~~eA~~~y~~Al~~~P~~  192 (297)
                                       ++...+.++|.+|..+|+              +++|+.++++++..+|++
T Consensus       104 -----------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        104 -----------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             -----------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                             345567778888888777              455555555555556555

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=5.3e-10  Score=105.13  Aligned_cols=153  Identities=20%  Similarity=0.201  Sum_probs=122.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC  112 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~  112 (297)
                      .+.|..+...++++.|+.+|.+++.-.-+        ..++.+....++++...+...-++|.-+.  -...-|+-+++.
T Consensus       302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~--e~r~kGne~Fk~  371 (539)
T KOG0548|consen  302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAE--EEREKGNEAFKK  371 (539)
T ss_pred             HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHH--HHHHHHHHHHhc
Confidence            33444555567777788888776653222        55666667777777777777777776322  222347888999


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      |+|.+|+..|.++|+.+                          |+++.++.|.|.||..+|.+.+|+...+++++++|++
T Consensus       372 gdy~~Av~~YteAIkr~--------------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~  425 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRD--------------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF  425 (539)
T ss_pred             cCHHHHHHHHHHHHhcC--------------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence            99999999999999984                          5678899999999999999999999999999999999


Q ss_pred             HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .. +..-|.++..+.+|++|...|+++++.
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98 888899999999999999999999997

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.24  E-value=1.8e-09  Score=100.82  Aligned_cols=157  Identities=23%  Similarity=0.134  Sum_probs=132.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ....|++++|+..++..++..|+++..+...+.++...|+..+|++.+++++.+.|..  ..+..++|..|.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHH
Confidence            4568999999999999999999999999999999999999999999999999999984  35667799999999999999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL  198 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL  198 (297)
                      +..+++.+..+                          |+++..|..|+.+|..+|+-.+|...+-               
T Consensus       394 i~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------  432 (484)
T COG4783         394 IRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLARA---------------  432 (484)
T ss_pred             HHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHHH---------------
Confidence            99999988763                          5788999999999999999999877654               


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          199 GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       199 g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                       ..|...|++++|+..+.++.+....+...+.   ++.....++
T Consensus       433 -E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a---R~dari~~~  472 (484)
T COG4783         433 -EGYALAGRLEQAIIFLMRASQQVKLGFPDWA---RADARIDQL  472 (484)
T ss_pred             -HHHHhCCCHHHHHHHHHHHHHhccCCcHHHH---HHHHHHHHH
Confidence             4566789999999999998886444454443   444444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.23  E-value=1.6e-09  Score=105.63  Aligned_cols=195  Identities=14%  Similarity=0.065  Sum_probs=134.7

Q ss_pred             CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442           25 VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN  103 (297)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~  103 (297)
                      -|.++.+.+++...+...++.+.|....++++.+ +-.++.+|+.|+.++..++|+.+|+.+...++.-.|++.....+.
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~  553 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK  553 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence            3677778888888888899999999999999999 556788999999999999999999998888777666521000000


Q ss_pred             HHHHHHHHcC-------------------------------------------CHHHHHHHHHHHHHh------------
Q 022442          104 VLIDLYKKCG-------------------------------------------KVEEQIEMLKRKLRL------------  128 (297)
Q Consensus       104 ~L~~ly~~~g-------------------------------------------~~~eAi~~~~~al~~------------  128 (297)
                        ..+-...|                                           +..+|+..++++..+            
T Consensus       554 --~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~  631 (799)
T KOG4162|consen  554 --IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL  631 (799)
T ss_pred             --hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence              01111122                                           333333333333332            


Q ss_pred             ------------------------------------------------hchhhhh-c--CcchhHHhhhhhh---H--HH
Q 022442          129 ------------------------------------------------IYQGEAF-N--GKPTKTARSHGKK---F--QV  152 (297)
Q Consensus       129 ------------------------------------------------~p~~~~~-~--~~~~~~~~~~~~~---~--~~  152 (297)
                                                                      .|-.... .  |........+...   |  .+
T Consensus       632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence                                                            1100000 0  0000000011111   1  16


Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHH--HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEV--VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~--~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .++|++..+...||.++.+.|+..-|.+  .++.|++++|+++. |+.||.++.++|+.++|.+.|..+++.
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            8889999999999999999998888888  89999999999998 999999999999999999999988876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.23  E-value=2.8e-10  Score=87.91  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ++++.+|..+..+|++++|+..|+.++..+|++. .......+|.++.+.|++++|+..|++++...|..          
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS----------   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC----------
Confidence            5677788888888888888888888888777531 12344557888888888888888888888765411          


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                   |..+.++.++|.++..+|++++|+.+|+++++..|++..
T Consensus        73 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        73 -------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             -------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence                         112456788888888888888888888888888887764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=7.3e-10  Score=92.50  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442           88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW  167 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~  167 (297)
                      .....+++.........+|.+|...|++++|+.+|++++++.|..                       ++.+.++.++|.
T Consensus        24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~~~~~la~   80 (172)
T PRK02603         24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------------NDRSYILYNMGI   80 (172)
T ss_pred             HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------------chHHHHHHHHHH
Confidence            344444443233456778999999999999999999999875410                       112458899999


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC--------------HHHHHHHHHHHHhc
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR--------------YNEARSVLEDVLYG  221 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~--------------~~eA~~~~~~al~~  221 (297)
                      +|..+|++++|+.+|++++.+.|++.. +.++|.++...|+              +++|+.++++++..
T Consensus        81 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603         81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998 8899999999887              45555555555554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=5e-11  Score=83.94  Aligned_cols=64  Identities=30%  Similarity=0.384  Sum_probs=61.5

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT-RYNEARSVLEDVLYG  221 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g-~~~eA~~~~~~al~~  221 (297)
                      ++.++.++|.++..+|++++|+.+|+++++++|+++. ++++|.++..+| ++++|+..++++++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            5678999999999999999999999999999999998 999999999999 799999999999986

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.22  E-value=3.9e-10  Score=105.00  Aligned_cols=96  Identities=16%  Similarity=0.038  Sum_probs=87.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC  112 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~  112 (297)
                      ..-+..++..|++++|+.+|+++++.+|+++.++.++|.++..+|++++|+..+++++.++|+++  ..++.+|.+|..+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~l   83 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHh
Confidence            34456677899999999999999999999999999999999999999999999999999999853  4566689999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 022442          113 GKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p  130 (297)
                      |++++|+..|++++++.|
T Consensus        84 g~~~eA~~~~~~al~l~P  101 (356)
T PLN03088         84 EEYQTAKAALEKGASLAP  101 (356)
T ss_pred             CCHHHHHHHHHHHHHhCC
Confidence            999999999999999865

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.22  E-value=3.9e-10  Score=93.68  Aligned_cols=118  Identities=12%  Similarity=0.007  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc
Q 022442           79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET  158 (297)
Q Consensus        79 ~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~  158 (297)
                      +..+.+.+...+...+.+........+|.++...|++++|+..|++++.+.+..                       ++.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------~~~   71 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------YDR   71 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------hhh
Confidence            344444444444455543344556668999999999999999999999885410                       113


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHH-------HcCCHHHHHHHHHHHH
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI-------KRTRYNEARSVLEDVL  219 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~-------~~g~~~eA~~~~~~al  219 (297)
                      +.++.++|.+|..+|++++|+.+|++++.++|++.. +.++|.++.       .+|++++|+..+++++
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            458999999999999999999999999999999998 889999998       7888776655555444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.22  E-value=1.2e-09  Score=110.68  Aligned_cols=150  Identities=15%  Similarity=0.042  Sum_probs=115.7

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-  136 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-  136 (297)
                      .+|.+..++..|..++...|++++|++.++.+++.+|+.  ..+++.+|.++.+.++++++..+  +++.+.+...-+. 
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            578888888888888888888888888888888888873  34556677888888888888877  7777755432111 


Q ss_pred             -CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHH
Q 022442          137 -GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV  214 (297)
Q Consensus       137 -~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~  214 (297)
                       -........         -+++..+++.||.||..+|++++|...|+++|+++|+|+. ..|+|..|... ++++|+.+
T Consensus       102 ve~~~~~i~~---------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m  171 (906)
T PRK14720        102 VEHICDKILL---------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITY  171 (906)
T ss_pred             HHHHHHHHHh---------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHH
Confidence             001111111         1234558999999999999999999999999999999998 88999999999 99999999


Q ss_pred             HHHHHhc
Q 022442          215 LEDVLYG  221 (297)
Q Consensus       215 ~~~al~~  221 (297)
                      +.+++..
T Consensus       172 ~~KAV~~  178 (906)
T PRK14720        172 LKKAIYR  178 (906)
T ss_pred             HHHHHHH
Confidence            9999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.8e-10  Score=104.08  Aligned_cols=180  Identities=17%  Similarity=0.117  Sum_probs=149.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH----------HHHHHHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE----------SLDNVLID  107 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~----------~l~~~L~~  107 (297)
                      +....|+.++|...--..+++++.+.++++.-|.++.-.++.+.|+..|++++.++|+....          .....-|+
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            45578999999999999999999999999999999999999999999999999999973110          01112356


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      -..+.|++.+|.++|..+|.+.|....                      .++..+.|.+.+...+|+..+|+.-...|+.
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~----------------------~naklY~nra~v~~rLgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKK----------------------TNAKLYGNRALVNIRLGRLREAISDCNEALK  315 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccc----------------------hhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence            668999999999999999999874211                      1345789999999999999999999999999


Q ss_pred             hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 022442          188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL  240 (297)
Q Consensus       188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~  240 (297)
                      ++|.... +..-|.|+..++++++|.+.|+++.+... ++.....+.+|...|.
T Consensus       316 iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~-s~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK-DCEIRRTLREAQLALK  368 (486)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHH
Confidence            9999998 78889999999999999999999998732 2444455555555555

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.21  E-value=6e-09  Score=108.69  Aligned_cols=233  Identities=11%  Similarity=0.060  Sum_probs=155.4

Q ss_pred             ccccchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCChHHHH
Q 022442           10 IFSSKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN----AGDRVDSALKDMAVVMKQLDRSEEAI   83 (297)
Q Consensus        10 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~Lg~~l~~~g~~~eAi   83 (297)
                      +......+.|..|.+.  .++...|..+...+...|++++|..++.....    ..|+ ..++..|-..|.+.|++++|.
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~  599 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAK  599 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHH
Confidence            3344556677777554  34455677777778888999999999888765    3455 356777888888999999999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hchhhhhc---------CcchhHHhhhhhhHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--IYQGEAFN---------GKPTKTARSHGKKFQV  152 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~--~p~~~~~~---------~~~~~~~~~~~~~~~~  152 (297)
                      ++|+.+.+.+... ....++.+...|.+.|++++|+.+|++..+.  .|+...|+         +.......-+......
T Consensus       600 elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        600 EVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            9998888765321 2345667788888999999999999888775  23322222         1100000000000001


Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC---
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYGR-IPGC---  226 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~~-~~~~---  226 (297)
                      .+.| +..+++.|..+|.+.|++++|+.+|++..+  +.|+...|..|...|.+.|++++|..++++..... .|+.   
T Consensus       679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            1222 355788899999999999999999998865  46766668888999999999999999999877642 1111   


Q ss_pred             -------cchhhHHHHHHHHHHHHhc
Q 022442          227 -------EDGRTRKRAEELLLELESK  245 (297)
Q Consensus       227 -------~~~~~~~~a~~~l~~~~~~  245 (297)
                             .....++.|..++..+...
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence                   1244566677777777543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.21  E-value=6.4e-10  Score=107.98  Aligned_cols=122  Identities=15%  Similarity=0.071  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHHcC
Q 022442           44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--------SEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCG  113 (297)
Q Consensus        44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~--------~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~~~g  113 (297)
                      +...|+.+|++|++++|+++.++-.++.++.....        ...+.+..++++.+  .|.++  ..+..+|.++...|
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~g  434 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVKG  434 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhcC
Confidence            37789999999999999999999988887765432        33444555555554  44332  45556677777889


Q ss_pred             CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                      ++++|...+++|+.++|                           +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus       435 ~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        435 KTDEAYQAINKAIDLEM---------------------------SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999998854                           245788899999999999999999999999999888


Q ss_pred             H
Q 022442          194 K  194 (297)
Q Consensus       194 ~  194 (297)
                      .
T Consensus       488 t  488 (517)
T PRK10153        488 T  488 (517)
T ss_pred             h
Confidence            6

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=4.7e-09  Score=93.54  Aligned_cols=190  Identities=17%  Similarity=0.186  Sum_probs=141.4

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h-HHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S-QESLDNVLI  106 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~-~~~l~~~L~  106 (297)
                      ..|+..... +...+.++|+.+|-..++.+|..-+++..||.++.+.|..|.||.+-+.++.. |+-  . ......-||
T Consensus        37 r~Yv~GlNf-LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~  114 (389)
T COG2956          37 RDYVKGLNF-LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLG  114 (389)
T ss_pred             HHHHhHHHH-HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence            345555444 45888999999999999999999999999999999999999999987776654 541  1 122335588


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhch-hhhhc--CcchhHHhhhhhhHH-----HhcCCCc-----HHHHHHHHHHHHHCC
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQ-GEAFN--GKPTKTARSHGKKFQ-----VSVRQET-----SRLLGNLAWAYMQKT  173 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~-~~~~~--~~~~~~~~~~~~~~~-----~~l~p~~-----~~~l~nLg~~y~~~g  173 (297)
                      .=|+..|-+|.|..+|...+..-.. ..+.-  -......+...+...     ..+.++.     +..+-.|+..+....
T Consensus       115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~  194 (389)
T COG2956         115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS  194 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence            8999999999999999998874110 00100  000011111111111     2233322     345667899999999


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|...+++|++-+|++.. -+-||.+....|+|+.|+..++.+++-
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence            999999999999999999998 788999999999999999999999986

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=3.5e-09  Score=91.49  Aligned_cols=160  Identities=19%  Similarity=0.105  Sum_probs=131.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      ...+++..|+.+-|..++.+.-...|+.......-|+.+-..|.+++|+++|+..+.-+|.+..  .+---..+...+|+
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v--~~KRKlAilka~GK  135 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV--IRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH--HHHHHHHHHHHcCC
Confidence            3445667788888888888766667888888888888888889999999999888888887432  22112234578888


Q ss_pred             HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      --+||+.+.+-++..+                          .++++|..|+.+|...|+|+.|.-||++.+-++|-++-
T Consensus       136 ~l~aIk~ln~YL~~F~--------------------------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l  189 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFM--------------------------NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL  189 (289)
T ss_pred             cHHHHHHHHHHHHHhc--------------------------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence            8888888888777643                          46789999999999999999999999999999999998


Q ss_pred             -HhHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 022442          195 -ACNLGLCLIKRT---RYNEARSVLEDVLYGR  222 (297)
Q Consensus       195 -~~nLg~~l~~~g---~~~eA~~~~~~al~~~  222 (297)
                       +..||.++..+|   +++-|..+|.+++..+
T Consensus       190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  190 YFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence             889999998887   7788999999999973

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=1.1e-09  Score=101.33  Aligned_cols=212  Identities=15%  Similarity=0.009  Sum_probs=143.1

Q ss_pred             ccccccchhhhhhhhhcCCCCCc--HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442            8 KKIFSSKKEDLFHVIHKVPAGDG--PYVRAKHAQLVQ--KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI   83 (297)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi   83 (297)
                      |.+.+...-|...|..+-.+...  +..++-.++..+  +++..|-.+-..|+..+--++.++.+-|.+-...|++++|.
T Consensus       431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~  510 (840)
T KOG2003|consen  431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA  510 (840)
T ss_pred             hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence            34445555666677776643222  233333344444  47889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh-------HH-HhcC
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK-------FQ-VSVR  155 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------~~-~~l~  155 (297)
                      +.|+.++.-+.. ....++ ++|..+..+|+.++|+++|-+.-.+.-...........+.....+.       .+ ..+-
T Consensus       511 ~~ykeal~ndas-c~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli  588 (840)
T KOG2003|consen  511 EFYKEALNNDAS-CTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI  588 (840)
T ss_pred             HHHHHHHcCchH-HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence            999999976554 222344 4788899999999999999987665321110000000000000000       01 2555


Q ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |++|.++..||.+|.+.|+-..|..|+-.....-|-|.. .-.||..|+...-.++|+.+|+++--.
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali  655 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI  655 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            777777777777777777777777777777777777776 666777777777777777777776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.17  E-value=6e-09  Score=93.97  Aligned_cols=195  Identities=23%  Similarity=0.231  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAG----D--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQES  100 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~  100 (297)
                      -|..++..+...|++++|..+|.++....    .  ....++...+.++.+. ++++|+..|++++.+.-.    .....
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~  115 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            37778888889999999999999998632    1  1244577778887776 999999999998875321    11223


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          101 LDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       101 l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ....+|.+|... |++++|+++|++|+++....              +...      .-...+.++|.++.++|+|++|+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--------------~~~~------~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--------------GSPH------SAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--------------T-HH------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------CChh------hHHHHHHHHHHHHHHhCCHHHHH
Confidence            456689999999 99999999999999984211              1100      01247789999999999999999


Q ss_pred             HHHHHHHHhCCCc------H-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCC
Q 022442          180 VVYQKAQMIDPDA------N-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQP  247 (297)
Q Consensus       180 ~~y~~Al~~~P~~------~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~  247 (297)
                      ..|+++....-++      . . ++..+.|++..|+...|...+++..... |...+..+..-+..++.++...++
T Consensus       176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~-~~F~~s~E~~~~~~l~~A~~~~D~  250 (282)
T PF14938_consen  176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD-PSFASSREYKFLEDLLEAYEEGDV  250 (282)
T ss_dssp             HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS-TTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHhCCH
Confidence            9999998854322      1 2 4577889999999999999999998762 233456666778888888875443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.16  E-value=6e-10  Score=112.74  Aligned_cols=163  Identities=12%  Similarity=0.033  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      +.-.+...+...+++++|+..++.++..+|+....++.+|.++.+.+++.++...  .++...+.+..  + ...-.++.
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--~-~~ve~~~~  107 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK--W-AIVEHICD  107 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc--h-hHHHHHHH
Confidence            4555566677899999999999999999999999999999999999999999988  77777665321  1 11222333


Q ss_pred             HcCCHHHHHHH-HHHHHHhhchhhhhcCcchhHHhhhhhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          111 KCGKVEEQIEM-LKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       111 ~~g~~~eAi~~-~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      ..|++-+-..+ +..|.-...     .+...+.    ...+.  +.++|+++.+++|+|..|... +.++|+.++++|+.
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk-----~g~~~ka----~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAK-----LNENKKL----KGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHH-----cCChHHH----HHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            33443333321 111111100     0000010    11111  688899999999999999999 99999999999998


Q ss_pred             hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          188 IDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       188 ~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .             ++...++.++..++.+.+..
T Consensus       178 ~-------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        178 R-------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             H-------------HHhhhcchHHHHHHHHHHhc
Confidence            6             55566777777777777775

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.15  E-value=3.2e-09  Score=86.12  Aligned_cols=124  Identities=16%  Similarity=0.083  Sum_probs=99.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKK  111 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~  111 (297)
                      ....+..++...+...+++.+...|+.   ..+...+|.++...|++++|++.|+.++...|+.. .......|+.++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~   97 (145)
T PF09976_consen   18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ   97 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            334446899999999999999999988   45677899999999999999999999999877532 12334558999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      +|++++|+..++....-                           +-.+.++..+|.+|..+|++++|+..|++||
T Consensus        98 ~~~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   98 QGQYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             cCCHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999999998662110                           0123466779999999999999999999985

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.13  E-value=1.7e-08  Score=89.01  Aligned_cols=180  Identities=12%  Similarity=-0.013  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLI  106 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~  106 (297)
                      ..+..+...+..|++++|+..|++.+...|..+.+   ...+|.++.+++++++|+..++++++.+|++... .+.+.+|
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            35555666678999999999999999999987655   4899999999999999999999999999974322 3445566


Q ss_pred             HHHHHcC------------------CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442          107 DLYKKCG------------------KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus       107 ~ly~~~g------------------~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~  168 (297)
                      .++...+                  ...+|+..+++.++..|......     .++   ... ..+.-..+.--...|..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~-----~A~---~rl-~~l~~~la~~e~~ia~~  184 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT-----DAT---KRL-VFLKDRLAKYELSVAEY  184 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH-----HHH---HHH-HHHHHHHHHHHHHHHHH
Confidence            5544443                  14678899999999987542211     000   000 00000112233578999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      |.+.|+|..|+.-++.+++..|+.+   + ..-|+..|..+|..++|..+...+.
T Consensus       185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            9999999999999999999999886   3 5678999999999999988776554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.13  E-value=1e-09  Score=79.11  Aligned_cols=97  Identities=27%  Similarity=0.317  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      ++.+|.++..+|++++|+..+++++...|.+.  .+...+|.++...|++++|+..+++++...|               
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------------   65 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDP---------------   65 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------
Confidence            44455555555555555555555555555421  2233345555555555555555555554422               


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                                 .+..++..+|.++...|++++|..++.+++...|
T Consensus        66 -----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          66 -----------DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             -----------cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence                       1223444555555555555555555555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.12  E-value=6.5e-09  Score=105.04  Aligned_cols=183  Identities=11%  Similarity=0.014  Sum_probs=94.4

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLID  107 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~  107 (297)
                      ..+..+...+.+.|++++|...|+..   .+.+..+|..|...|.+.|++++|+.+|++....  .|+   ...++.+..
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd---~~t~~~ll~  333 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID---QFTFSIMIR  333 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Confidence            34444555566666666666666543   2334455666666666666666666666665442  333   123344555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhch-h-hhhcCcchhHHhhh------hhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQ-G-EAFNGKPTKTARSH------GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~-~-~~~~~~~~~~~~~~------~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .|.+.|++++|.+++..+++...+ + ..++. +.......      ...|....+| +..+|+.|...|.+.|+.++|+
T Consensus       334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~-Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~  411 (697)
T PLN03081        334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTA-LVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAV  411 (697)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCCCCeeehHH-HHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHH
Confidence            566666666666666666554311 1 01110 00000000      0011111112 3345666666666666666666


Q ss_pred             HHHHHHHH--hCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          180 VVYQKAQM--IDPDANKACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       180 ~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      ..|++.++  +.||...+..+..++.+.|+.++|..+|+....
T Consensus       412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            66666554  345555555555666666666666666666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.11  E-value=4.7e-10  Score=78.06  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      +|..+.+.|++++|+.+|+++++..                          |+++.++..+|.++.++|++++|+..|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--------------------------PDNPEAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--------------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4566677777777777777777653                          34556777777777777777777777777


Q ss_pred             HHHhCCCcH
Q 022442          185 AQMIDPDAN  193 (297)
Q Consensus       185 Al~~~P~~~  193 (297)
                      +++++|+++
T Consensus        57 a~~~~P~~p   65 (65)
T PF13432_consen   57 ALELDPDNP   65 (65)
T ss_dssp             HHHHSTT-H
T ss_pred             HHHHCcCCC
Confidence            777777664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.10  E-value=5.6e-09  Score=100.16  Aligned_cols=184  Identities=15%  Similarity=0.057  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      ++|.-..=....+++...+...++.++..|.+++++...|..+..+|+.++|....+..+..++.. +.=|+ .+|.+++
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwH-v~gl~~R   86 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWH-VLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHH-HHHHHHh
Confidence            344333334467899999999999999999999999999999999999999999999999988873 23344 4788999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcC---cchhHHhhhhh-----hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNG---KPTKTARSHGK-----KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~---~~~~~~~~~~~-----~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..++|++||.+|+.|+.+.|++.....   .+....+....     ...+++.|..-..|..++.++...|++..|....
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998653321110   00000000000     0113444555555556666666666666665555


Q ss_pred             HHHHHhC---CCcHH-H-----hHHHHHHHHcCCHHHHHHHHH
Q 022442          183 QKAQMID---PDANK-A-----CNLGLCLIKRTRYNEARSVLE  216 (297)
Q Consensus       183 ~~Al~~~---P~~~~-~-----~nLg~~l~~~g~~~eA~~~~~  216 (297)
                      ..-....   |+... -     .--...+.+.|.+++|.+.+.
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~  209 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL  209 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4444332   32221 1     112334455555555555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.10  E-value=5.2e-09  Score=105.74  Aligned_cols=201  Identities=11%  Similarity=0.021  Sum_probs=149.8

Q ss_pred             cchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           13 SKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ......+..+.+.  +++...+..+...+.+.|++++|...|++..+  | +..+|..|...|.+.|+.++|+++|++..
T Consensus       342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566555554  44555777788888899999999999987654  3 34578999999999999999999999987


Q ss_pred             hh--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hchhhhhcCcchhHHhhhh---h---hHH-HhcCCCc
Q 022442           91 GL--CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL---IYQGEAFNGKPTKTARSHG---K---KFQ-VSVRQET  158 (297)
Q Consensus        91 ~~--~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~~~~~~~~~---~---~~~-~~l~p~~  158 (297)
                      ..  .|+   ...++.+...+...|.+++|..+|+...+.   .|....|+... ......+   +   .+. ..+.|+ 
T Consensus       419 ~~g~~Pd---~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li-~~l~r~G~~~eA~~~~~~~~~~p~-  493 (697)
T PLN03081        419 AEGVAPN---HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI-ELLGREGLLDEAYAMIRRAPFKPT-  493 (697)
T ss_pred             HhCCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH-HHHHhcCCHHHHHHHHHHCCCCCC-
Confidence            64  454   234555778889999999999999998763   23222332100 0000001   1   111 223343 


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+|..|..++...|+++.|...+++.+++.|++.. +..|+.+|.+.|++++|..+++.....
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            457999999999999999999999999999999887 888999999999999999999998865

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.10  E-value=8.4e-09  Score=83.68  Aligned_cols=121  Identities=18%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             HCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442           75 QLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  153 (297)
Q Consensus        75 ~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (297)
                      ..++...+.+.++.++..+|+... ......++.++...|++++|+..|++++...|+...                   
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l-------------------   83 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL-------------------   83 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence            688999999999999999997522 234466899999999999999999999986431100                   


Q ss_pred             cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                          .+.+...||.++..+|++++|+..++.+ .-.+-.+. +..+|.+|..+|++++|+..|++++
T Consensus        84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                1236788999999999999999999762 22222334 5678999999999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.10  E-value=1.2e-08  Score=87.58  Aligned_cols=175  Identities=21%  Similarity=0.141  Sum_probs=124.4

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNV  104 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~  104 (297)
                      +...+..+...+..|++.+|+..|++.+...|.   .+.+.+.+|.++...|++++|+..+++++...|++.. ..+.+.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            345777788889999999999999999987665   5788999999999999999999999999999997421 234445


Q ss_pred             HHHHHHH-----------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442          105 LIDLYKK-----------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       105 L~~ly~~-----------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      +|..+..           ++...+|+..|+..+...|.+....     .++....    .+....+.--..+|..|...|
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-----~A~~~l~----~l~~~la~~e~~ia~~Y~~~~  155 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE-----EAKKRLA----ELRNRLAEHELYIARFYYKRG  155 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHcc
Confidence            6665444           3445689999999999887542111     0000000    000011223466899999999


Q ss_pred             ChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHH
Q 022442          174 NFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~  212 (297)
                      +|..|+.-|+.+++..|+.+   . +.-|+.+|.++|..+.|.
T Consensus       156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999999999999987   2 567899999999988554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.09  E-value=3.8e-08  Score=102.76  Aligned_cols=95  Identities=11%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      |..+.......|+++.|..++++..+.+.. +...+..|-..|.+.|+.++|..+|+.+...+.. ++...++.+...|.
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~  518 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence            433344444555555555555555443211 2334444555555555555555555555443221 01123334445555


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 022442          111 KCGKVEEQIEMLKRKLR  127 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~  127 (297)
                      +.|++++|+.+|++...
T Consensus       519 k~G~~eeAl~lf~~M~~  535 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRS  535 (1060)
T ss_pred             HCcCHHHHHHHHHHHHH
Confidence            55555555555555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.08  E-value=3.1e-09  Score=105.90  Aligned_cols=215  Identities=17%  Similarity=0.159  Sum_probs=154.8

Q ss_pred             CCcccccccchhhhhhhhhcCCCCCcHHHHHHHH-----HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCh
Q 022442            5 SNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHA-----QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRS   79 (297)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~   79 (297)
                      |+|++.-++...-.+|.+.++-....-.++....     -...++...|...+-++++++|..+.++..||.+|....+.
T Consensus       429 s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm  508 (1238)
T KOG1127|consen  429 SFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM  508 (1238)
T ss_pred             hcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            3455555555555555555553222111111111     12456788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh----hc-Cc-chhHHhhhhh--hHH
Q 022442           80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA----FN-GK-PTKTARSHGK--KFQ  151 (297)
Q Consensus        80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~----~~-~~-~~~~~~~~~~--~~~  151 (297)
                      ..|..+|+++.+++|.++  ...-.+++.|.....+++|..+.-.+-+..|....    .. |. ..+....|+.  .++
T Consensus       509 ~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ  586 (1238)
T KOG1127|consen  509 KRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ  586 (1238)
T ss_pred             HHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence            999999999999999854  34444789999999999999986666665553211    11 10 0010111111  133


Q ss_pred             --HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          152 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       152 --~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                        +.++|.+.+.|..||.+|-..|++.-|++.|.+|..++|++.. .+..+......|.|.+|++.+..++..
T Consensus       587 sALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  587 SALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              5677888888999999999999999999999999999998887 888888888889999999988888764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=6.5e-10  Score=81.56  Aligned_cols=83  Identities=31%  Similarity=0.406  Sum_probs=70.6

Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      .+|++++|+..++++++..|.+                       | +..++.++|.||.++|+|++|+.++++ +..+|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~   55 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP   55 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence            3689999999999999986521                       1 234678899999999999999999999 88999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      .+.. .+.+|.|+.++|++++|+.+++++
T Consensus        56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   56 SNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            9987 778899999999999999999875

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.07  E-value=3.7e-08  Score=89.98  Aligned_cols=202  Identities=15%  Similarity=0.117  Sum_probs=152.8

Q ss_pred             hhhhhcCCCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----
Q 022442           19 FHVIHKVPAGDGPYVRAK--HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----   92 (297)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~----   92 (297)
                      -..+.+.+++++-.+.+.  .+.+.+||++.|..-..+++...|.++..+.-.-.+|...|++.+....+.+..+.    
T Consensus       141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~  220 (400)
T COG3071         141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS  220 (400)
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence            367778877777555554  56778999999999999999999999999999999999999999988766533211    


Q ss_pred             ----------------------------------CCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-
Q 022442           93 ----------------------------------CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF-  135 (297)
Q Consensus        93 ----------------------------------~P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~-  135 (297)
                                                        -|..  .+..+...++.-+.++|++++|.+..+++++...++... 
T Consensus       221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~  300 (400)
T COG3071         221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR  300 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH
Confidence                                              1110  001222334566788999999999999999986433211 


Q ss_pred             -cCc--chhHHhhhhhh--HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHH
Q 022442          136 -NGK--PTKTARSHGKK--FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNE  210 (297)
Q Consensus       136 -~~~--~~~~~~~~~~~--~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~e  210 (297)
                       .+.  ..+ .....+.  ..+...|+++.++..||..|...+.|.+|..+|+.|++..|+..++..+|.++.++|+..+
T Consensus       301 ~~~~l~~~d-~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         301 LIPRLRPGD-PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE  379 (400)
T ss_pred             HHhhcCCCC-chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence             000  000 0000011  1145568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 022442          211 ARSVLEDVLYG  221 (297)
Q Consensus       211 A~~~~~~al~~  221 (297)
                      |.+++++++..
T Consensus       380 A~~~r~e~L~~  390 (400)
T COG3071         380 AEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.4e-08  Score=90.04  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc
Q 022442           79 SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET  158 (297)
Q Consensus        79 ~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~  158 (297)
                      .++-+..++..+..+|+++. .|. .||.+|..+|+++.|...|++|+++.                          |++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~e-gW~-~Lg~~ym~~~~~~~A~~AY~~A~rL~--------------------------g~n  189 (287)
T COG4235         138 MEALIARLETHLQQNPGDAE-GWD-LLGRAYMALGRASDALLAYRNALRLA--------------------------GDN  189 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCch-hHH-HHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCC
Confidence            55666778888999998653 344 48999999999999999999999985                          467


Q ss_pred             HHHHHHHHHHHHHC---CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 022442          159 SRLLGNLAWAYMQK---TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE  227 (297)
Q Consensus       159 ~~~l~nLg~~y~~~---g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~  227 (297)
                      ++++..+|.++..+   ....++...+++++.+||++.. ..-||..++..|+|.+|...++..+...+++.+
T Consensus       190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            78888899888655   3567899999999999999998 888999999999999999999999998544444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.06  E-value=2.6e-08  Score=95.88  Aligned_cols=154  Identities=19%  Similarity=0.124  Sum_probs=97.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      .+..||...|...+.+|+..+|+..+.|..--.+......+++|..+|.++....|.   +.++.--+.+...++..++|
T Consensus       594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT---eRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT---ERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc---chhhHHHhHHHHHhhhHHHH
Confidence            345577777777777777777777777766666666677777777777777666664   12333334455666777777


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  197 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n  197 (297)
                      +.+++++|+..|                          +++..+..+|.++.++++.+.|...|..-++.=|+.+. |..
T Consensus       671 ~rllEe~lk~fp--------------------------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll  724 (913)
T KOG0495|consen  671 LRLLEEALKSFP--------------------------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL  724 (913)
T ss_pred             HHHHHHHHHhCC--------------------------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence            777777777654                          44555666666666666666666666666666666665 666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          198 LGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       198 Lg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |+.+-.+.|..-.|..+++++...
T Consensus       725 LakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  725 LAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHhc
Confidence            666666666666666666555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.05  E-value=5.4e-09  Score=80.66  Aligned_cols=102  Identities=15%  Similarity=0.022  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVL  105 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L  105 (297)
                      ..++..+..+...|++++|+..|.+++..+|++   +.+++.+|.++.+.|++++|+..|+.++..+|++. .......+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            356778888889999999999999999988876   67899999999999999999999999999998742 12345668


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhch
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~  131 (297)
                      |.++...|++++|+..++++++..|.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            99999999999999999999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=2e-08  Score=90.26  Aligned_cols=231  Identities=17%  Similarity=0.140  Sum_probs=165.3

Q ss_pred             ccccccchhhhhhhhhcCCCCCcH----HHHHHH------------HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 022442            8 KKIFSSKKEDLFHVIHKVPAGDGP----YVRAKH------------AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAV   71 (297)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~   71 (297)
                      |.|+-.+.+.-|+.+.+..++...    .-.+..            .+.-.||...|+......|+..|=+++.+..-+.
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak  197 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK  197 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence            556677777788666666433322    211111            1234589999999999999999999998889999


Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc--CcchhHHhhhhh
Q 022442           72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN--GKPTKTARSHGK  148 (297)
Q Consensus        72 ~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~--~~~~~~~~~~~~  148 (297)
                      +|...|....||.-++.+-++..++  ....+-.+.++...|+.+.++...++.|+++|+-. .|.  -.+.++..+...
T Consensus       198 c~i~~~e~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les  275 (504)
T KOG0624|consen  198 CYIAEGEPKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES  275 (504)
T ss_pred             HHHhcCcHHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887763  34555578889999999999999999999988432 111  001111111100


Q ss_pred             ---------------h--HHHhcCCCcHHH----HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442          149 ---------------K--FQVSVRQETSRL----LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  206 (297)
Q Consensus       149 ---------------~--~~~~l~p~~~~~----l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g  206 (297)
                                     .  ..+.-+|+-+.+    +.-+-.|+..-|++.+|+....++|+++|++.. ++..+.+|+-..
T Consensus       276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE  355 (504)
T KOG0624|consen  276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE  355 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence                           0  013445654333    344788999999999999999999999999998 999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q 022442          207 RYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLL  240 (297)
Q Consensus       207 ~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~  240 (297)
                      .|++|+.-|+++.+.+..+..-...+++|..+..
T Consensus       356 ~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk  389 (504)
T KOG0624|consen  356 MYDDAIHDYEKALELNESNTRAREGLERAKRLKK  389 (504)
T ss_pred             HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence            9999999999999973222222233444544444

>PLN03077 Protein ECB2; Provisional

Probab=99.03  E-value=2.1e-08  Score=103.63  Aligned_cols=200  Identities=10%  Similarity=0.004  Sum_probs=138.2

Q ss_pred             cchhhhhhhhhcC--CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           13 SKKEDLFHVIHKV--PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ...++.+..+.+.  ..+...+..+...+.+.|+.++|...|...    +.+..+|..|...|.+.|+.++|+++|++..
T Consensus       506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~  581 (857)
T PLN03077        506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV  581 (857)
T ss_pred             HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344455444443  233334555566777888888888888765    4455678888888888888888888888876


Q ss_pred             hh--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hchhhhhcC------cchhHHhhhhhhHH-HhcCCCc
Q 022442           91 GL--CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL---IYQGEAFNG------KPTKTARSHGKKFQ-VSVRQET  158 (297)
Q Consensus        91 ~~--~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~---~p~~~~~~~------~~~~~~~~~~~~~~-~~l~p~~  158 (297)
                      ..  .|+.   ..++.+...+.+.|++++|..+|++..+.   .|.-..|+.      +..+.... .+.+. +.++|+ 
T Consensus       582 ~~g~~Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA-~~~~~~m~~~pd-  656 (857)
T PLN03077        582 ESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA-YNFINKMPITPD-  656 (857)
T ss_pred             HcCCCCCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH-HHHHHHCCCCCC-
Confidence            63  4542   23344556778888888888888887743   232223320      00000000 00111 245565 


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+|..|-.++...|+.+.++...+++++++|++.. +..|+.+|...|++++|..+.+...+.
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            567888777888999999999999999999999998 888999999999999999999988765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.3e-08  Score=90.35  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH-HcC--CHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK-KCG--KVEEQI  119 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~-~~g--~~~eAi  119 (297)
                      ...+.-+.-++..++.+|++.+-|..||.+|..+|++..|..+|++++++.|+++....+  ++.++. +.|  ...++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g--~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG--LAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCcccHHHH
Confidence            346778888999999999999999999999999999999999999999999986543222  443333 333  467889


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHH
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA  195 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~  195 (297)
                      ..++++++++                          |.+..+++.||..+++.|+|.+|+..++..++..|.+..+
T Consensus       214 ~ll~~al~~D--------------------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         214 ALLRQALALD--------------------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            9999999884                          4567899999999999999999999999999999877653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.02  E-value=5.1e-09  Score=75.39  Aligned_cols=98  Identities=22%  Similarity=0.188  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      .+...+..+...|++++|+..++++++..|....++..+|.++...|++++|+..++.++...|.+.  .....++.++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHH
Confidence            3556677778899999999999999999999999999999999999999999999999999999743  35556889999


Q ss_pred             HcCCHHHHHHHHHHHHHhhc
Q 022442          111 KCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p  130 (297)
                      ..|++++|...++++++..|
T Consensus        80 ~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          80 KLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHhHHHHHHHHHHHHccCC
Confidence            99999999999999988754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=4e-09  Score=95.39  Aligned_cols=66  Identities=24%  Similarity=0.310  Sum_probs=52.8

Q ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH-HHHHHHHHHHHhc
Q 022442          156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY-NEARSVLEDVLYG  221 (297)
Q Consensus       156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~-~eA~~~~~~al~~  221 (297)
                      +.++.+++.++.+++++|+|++|+..+++|+..+|++++ +.|++.+...+|+. +.+.+++.++...
T Consensus       198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            346678899999999999999999999999999999998 89999999999988 5555566665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.02  E-value=5.1e-09  Score=104.39  Aligned_cols=202  Identities=13%  Similarity=-0.012  Sum_probs=135.4

Q ss_pred             hhhhhhhh----hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           15 KEDLFHVI----HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        15 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      .+.+||.+    +.-+.-..+|..+|+++-.--|...|..+|++|..+||.+.++....+..|.....+++|..+.-.+-
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            34555333    33344455788899988755688889999999999999988887777777777777777776654444


Q ss_pred             hhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh--------hhhc--CcchhHHhhhhhhH--HHhcCCC
Q 022442           91 GLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--------EAFN--GKPTKTARSHGKKF--QVSVRQE  157 (297)
Q Consensus        91 ~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~--------~~~~--~~~~~~~~~~~~~~--~~~l~p~  157 (297)
                      +..|... ..+|.. .|-.|.+.+++-.|+..++.+++..|.+        .+|.  |+...    ..+.|  ...++|+
T Consensus       554 qka~a~~~k~nW~~-rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~----AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  554 QKAPAFACKENWVQ-RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSH----ALKVFTKASLLRPL  628 (1238)
T ss_pred             hhchHHHHHhhhhh-ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceeh----HHHhhhhhHhcCcH
Confidence            4444211 112222 4555666666666666666666665532        1111  11000    01122  1345667


Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +--+.+-.+.....+|+|.+|+..+...+....+-.. ...||.++++.-...-+...+.+++..
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~  693 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF  693 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            7778888999999999999999999999998777776 778999999887766666666776654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.01  E-value=1.7e-09  Score=79.37  Aligned_cols=81  Identities=27%  Similarity=0.282  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      +|+++.|+.+|++++..+|.  +...++.+|.++.++|++++|+..+++ ...+|.+  ......+|.++.++|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--PDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--HHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHHHhCCHHHHH
Confidence            68999999999999999984  567788899999999999999999999 7777753  244556799999999999999


Q ss_pred             HHHHHH
Q 022442          120 EMLKRK  125 (297)
Q Consensus       120 ~~~~~a  125 (297)
                      .+|+++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.01  E-value=1e-09  Score=76.33  Aligned_cols=58  Identities=31%  Similarity=0.352  Sum_probs=55.4

Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|.++.+.|++++|+.+|+++++.+|+++. ++.+|.++..+|++++|+.+|++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999 999999999999999999999999987

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.01  E-value=9.7e-09  Score=91.50  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+++-||.+|...|++++|+..|++++...|+++   + ++.+|.++..+|++++|..+|++++..
T Consensus       181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555443   2 444555555555555555555555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.01  E-value=3.4e-08  Score=84.75  Aligned_cols=137  Identities=21%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      .++.++..|..+.+.|++.+|+..|+.++...|.. ........+|.++.+.|++++|+..+++.++..|..        
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~--------   75 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS--------   75 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence            46788999999999999999999999999999963 223455668999999999999999999999987732        


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-----------CChHHHHHHHHHHHHhCCCcHH---H-----------
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----------TNFMAAEVVYQKAQMIDPDANK---A-----------  195 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-----------g~~~eA~~~y~~Al~~~P~~~~---~-----------  195 (297)
                                     |..+.+++.+|.++..+           +...+|+..|+..+...|++.-   .           
T Consensus        76 ---------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   76 ---------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             ---------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence                           22345777888876554           3456999999999999999852   1           


Q ss_pred             ----hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 ----CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 ----~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                          +.+|..|.+.|.+..|+..++.++..
T Consensus       141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  141 AEHELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                45799999999999999999999996

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.01  E-value=1.7e-08  Score=79.20  Aligned_cols=108  Identities=24%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      .+.++.++...|+.++|+.+|++++.....+                       +.-.+++.++|.+|..+|++++|+..
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-----------------------~~~~~a~i~lastlr~LG~~deA~~~   60 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG-----------------------ADRRRALIQLASTLRNLGRYDEALAL   60 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3447888999999999999999999863211                       11235889999999999999999999


Q ss_pred             HHHHHHhCCC---cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 022442          182 YQKAQMIDPD---ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL  238 (297)
Q Consensus       182 y~~Al~~~P~---~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~  238 (297)
                      +++++...|+   +.. ...++.++...|+++||+..+-.++..      ....+.++...
T Consensus        61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~------~~~~y~ra~~~  115 (120)
T PF12688_consen   61 LEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE------TLPRYRRAIRF  115 (120)
T ss_pred             HHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            9999999898   555 677899999999999999999888874      22255555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.01  E-value=4.4e-08  Score=88.35  Aligned_cols=143  Identities=24%  Similarity=0.227  Sum_probs=102.8

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----cchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P----~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ++++|..+|.+              .|..|...|++++|.++|.++....-    .......+...+.+|.+. ++++|+
T Consensus        30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            67777777765              58889999999999999998755432    111122334456676555 999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCC--CcH---
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDP--DAN---  193 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-g~~~eA~~~y~~Al~~~P--~~~---  193 (297)
                      .+|++++.+.-              ..++.-      .-+.++.++|.+|... |++++|+.+|++|+++.-  +..   
T Consensus        95 ~~~~~A~~~y~--------------~~G~~~------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a  154 (282)
T PF14938_consen   95 ECYEKAIEIYR--------------EAGRFS------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA  154 (282)
T ss_dssp             HHHHHHHHHHH--------------HCT-HH------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHH--------------hcCcHH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence            99999999731              111110      0245789999999999 999999999999999732  222   


Q ss_pred             -H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          194 -K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       194 -~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                       . ..++|.++..+|+|++|+..|+++...
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             2 468999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.99  E-value=2e-08  Score=82.18  Aligned_cols=112  Identities=19%  Similarity=0.119  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ..|.-+..+|++++|..+|+-....+                          |.+++.+..||.|+..+++|++|+.+|-
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--------------------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~   95 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYD--------------------------FYNPDYTMGLAAVCQLKKQFQKACDLYA   95 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666688999999999888766653                          3456788999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESK  245 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~  245 (297)
                      .|..++++++. .+..|.||+.+|+.++|...|+.++..    +.+..-.++|..+|..+...
T Consensus        96 ~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~  154 (165)
T PRK15331         96 VAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTA  154 (165)
T ss_pred             HHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHcc
Confidence            99999999998 999999999999999999999999984    55555567888888888643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.98  E-value=3.3e-09  Score=74.54  Aligned_cols=67  Identities=27%  Similarity=0.188  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p  130 (297)
                      ++.+|..+|.++...|++++|+..|++++.++|+++  .++..+|.+|..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            355666777777777777777777777777777632  34455667777777 57777777777776644

...

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=8.2e-08  Score=83.16  Aligned_cols=134  Identities=17%  Similarity=0.213  Sum_probs=109.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      -..|.+++|+++|...+..+|.+..++..--.++..+|+.-+||+.+...++..|.|. +.|+. |+.+|...|+|++|.
T Consensus        97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~-EAW~e-LaeiY~~~~~f~kA~  174 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ-EAWHE-LAEIYLSEGDFEKAA  174 (289)
T ss_pred             HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH-HHHHH-HHHHHHhHhHHHHHH
Confidence            3568999999999999999999999998888888999999999999999999999863 34544 899999999999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHhCCCcHH-H
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ---KTNFMAAEVVYQKAQMIDPDANK-A  195 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~---~g~~~eA~~~y~~Al~~~P~~~~-~  195 (297)
                      =||++.+-+.|.                          ++..+..+|.++.-   ..++.-|..+|.++++++|.+.. +
T Consensus       175 fClEE~ll~~P~--------------------------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  175 FCLEELLLIQPF--------------------------NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL  228 (289)
T ss_pred             HHHHHHHHcCCC--------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence            999999988763                          33344444544443   34788999999999999996665 6


Q ss_pred             hHHHHH
Q 022442          196 CNLGLC  201 (297)
Q Consensus       196 ~nLg~~  201 (297)
                      +.+-.|
T Consensus       229 ~GI~lc  234 (289)
T KOG3060|consen  229 FGIYLC  234 (289)
T ss_pred             HHHHHH
Confidence            554333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.95  E-value=1.4e-07  Score=90.88  Aligned_cols=203  Identities=15%  Similarity=0.137  Sum_probs=159.0

Q ss_pred             hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      ++|.......+....+.....+....+..++|+.+++.+++..|.....|..+|.++.++++.+.|.++|..-++.+|..
T Consensus       639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            44544444444444565556666778999999999999999999999999999999999999999999999999999974


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc----------Ccc-------hhHHhhhhhh----------
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN----------GKP-------TKTARSHGKK----------  149 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~----------~~~-------~~~~~~~~~~----------  149 (297)
                      .  .++..|+.+=.+.|..-.|-.++.++.-.+|.+..+.          |+.       .+.....+..          
T Consensus       719 i--pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l  796 (913)
T KOG0495|consen  719 I--PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL  796 (913)
T ss_pred             c--hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence            3  4666688888888999999999999988888653321          110       0000000000          


Q ss_pred             ---------HH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          150 ---------FQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       150 ---------~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                               +.  +.--..++.++...|..+....+++.|.+.|.+|+.++||+.+ |..+-..+...|.-++-.+++.+
T Consensus       797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~  876 (913)
T KOG0495|consen  797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK  876 (913)
T ss_pred             ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                     00  1111357788999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHhc
Q 022442          218 VLYG  221 (297)
Q Consensus       218 al~~  221 (297)
                      ....
T Consensus       877 c~~~  880 (913)
T KOG0495|consen  877 CETA  880 (913)
T ss_pred             Hhcc
Confidence            8886

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.95  E-value=3.1e-08  Score=92.76  Aligned_cols=120  Identities=22%  Similarity=0.254  Sum_probs=105.4

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH  146 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~  146 (297)
                      ..|-..+...+++++|+..++++.+.+|.     +...++.++...++-.+|+..++++|+..|                
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----------------  231 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENP----------------  231 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----------------
Confidence            34556677789999999999999999986     223478889999999999999999998644                


Q ss_pred             hhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       147 ~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                                .+...+..-+..+...++++.|+.+.++++.+.|++.. |..|+.+|..+|++++|+..+..
T Consensus       232 ----------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  232 ----------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence                      45668888999999999999999999999999999998 99999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.95  E-value=1e-07  Score=91.71  Aligned_cols=248  Identities=15%  Similarity=0.082  Sum_probs=166.6

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      .++.+.|.++.+.+-.|...-.-|+.++|..+-+.+++.++...-+|+.+|.++....+|+|||++|+.|+.+.|++  .
T Consensus        32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN--~  109 (700)
T KOG1156|consen   32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN--L  109 (700)
T ss_pred             HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc--H
Confidence            45667788888887777777778999999999999999999999999999999999999999999999999999984  4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc--------chhHHhhhhhhHHHhcC--CCc-----HHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK--------PTKTARSHGKKFQVSVR--QET-----SRLLG  163 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~--------~~~~~~~~~~~~~~~l~--p~~-----~~~l~  163 (297)
                      .+..-|+.+..+.|+++-....-.+.+++.|..-++. +.        ....+...-..+.-..+  |+.     ...+.
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L  189 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL  189 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            5666678888999999999999999999987432221 00        00000000111111111  222     23445


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHH---
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAE---  236 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~---  236 (297)
                      ....++.+.|.+++|++....   ..|...+    ...-+.++.++|++++|..+|+..+..+|....-...+..+.   
T Consensus       190 y~n~i~~E~g~~q~ale~L~~---~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~  266 (700)
T KOG1156|consen  190 YQNQILIEAGSLQKALEHLLD---NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI  266 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHh---hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Confidence            567777888998888776654   4444443    334689999999999999999999997332222122222222   


Q ss_pred             --------HHHHHHHhcCCCCchhhhhcccc--hhHHHHHHHHHHh
Q 022442          237 --------ELLLELESKQPPPDLSDLLGLNL--EDEFVNGLEEMVR  272 (297)
Q Consensus       237 --------~~l~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~l~  272 (297)
                              .+++.+....|-...+..++.++  +++|-+..+.++.
T Consensus       267 ~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~  312 (700)
T KOG1156|consen  267 KDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR  312 (700)
T ss_pred             hhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence                    12222223333333333344443  5777777777765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.94  E-value=2.1e-07  Score=82.10  Aligned_cols=138  Identities=17%  Similarity=0.085  Sum_probs=114.2

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      ..+..++..|..+...|++++|++.|+.++...|.... ......+|.+|.+.|++++|+..+++.++..|.        
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~--------  101 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--------  101 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence            45667889999999999999999999999999997422 123456899999999999999999999999773        


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC------------------hHHHHHHHHHHHHhCCCcHH---H---
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN------------------FMAAEVVYQKAQMIDPDANK---A---  195 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~------------------~~eA~~~y~~Al~~~P~~~~---~---  195 (297)
                                     .|+.+.+++.+|.++..+++                  ..+|+..|++.++..|+..-   .   
T Consensus       102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866        102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence                           23456788999988755541                  35789999999999998852   1   


Q ss_pred             ------------hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 ------------CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 ------------~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                                  +..|..|.+.|++..|+.-++.++..
T Consensus       167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~  204 (243)
T PRK10866        167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD  204 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence                        45788999999999999999999996

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.93  E-value=3.7e-07  Score=88.57  Aligned_cols=183  Identities=17%  Similarity=0.062  Sum_probs=134.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH-----
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-----  111 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~-----  111 (297)
                      .+....|++++|+..+......-.+....+...|.++.++|++++|...|+.++..+|++.  ..+..|..+..-     
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHhhhcccc
Confidence            3455789999999999998888888888899999999999999999999999999999843  233334333311     


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhh-------------hc-------------Ccc------hhHHhhhhh------h---H
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEA-------------FN-------------GKP------TKTARSHGK------K---F  150 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~-------------~~-------------~~~------~~~~~~~~~------~---~  150 (297)
                      ....+.-..+|++.-...|...+             |.             |.+      ..+.....+      .   +
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~  169 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY  169 (517)
T ss_pred             cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence            12567778888887666552211             10             000      000000000      0   0


Q ss_pred             HHh--------------cCCCc--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHH
Q 022442          151 QVS--------------VRQET--SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARS  213 (297)
Q Consensus       151 ~~~--------------l~p~~--~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~  213 (297)
                      .-.              .+|..  .++++.|+..|...|++++|+.+..+||+..|+.++ ++..|.+|-..|++.+|..
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~  249 (517)
T PF12569_consen  170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAE  249 (517)
T ss_pred             HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            001              11111  256788999999999999999999999999999999 7888999999999999999


Q ss_pred             HHHHHHhc
Q 022442          214 VLEDVLYG  221 (297)
Q Consensus       214 ~~~~al~~  221 (297)
                      .++.+...
T Consensus       250 ~~~~Ar~L  257 (517)
T PF12569_consen  250 AMDEAREL  257 (517)
T ss_pred             HHHHHHhC
Confidence            99999987

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=2.9e-08  Score=91.14  Aligned_cols=130  Identities=17%  Similarity=0.120  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCc-------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG  132 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-------------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~  132 (297)
                      ...-|..|.+.|+|..|+..|++++..-+.             ......+++|+.+|.++++|.+|+....++|++.   
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---  287 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---  287 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence            566799999999999999999987765331             1123456778999999999999999999999874   


Q ss_pred             hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHH
Q 022442          133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEA  211 (297)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA  211 (297)
                                             |++..+++.-|.+|..+|+|+.|+..|++|++++|+|.. ...|..|-.+..++.+.
T Consensus       288 -----------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  288 -----------------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             -----------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence                                   456778999999999999999999999999999999987 77788887777766555


Q ss_pred             -HHHHHHHHhc
Q 022442          212 -RSVLEDVLYG  221 (297)
Q Consensus       212 -~~~~~~al~~  221 (297)
                       ..+|.+.+..
T Consensus       345 ekk~y~~mF~k  355 (397)
T KOG0543|consen  345 EKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhc
Confidence             6777887764

>PRK11906 transcriptional regulator; Provisional

Probab=98.92  E-value=5.5e-08  Score=91.24  Aligned_cols=149  Identities=9%  Similarity=0.045  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           44 DPEAAIVLFWKAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        44 ~~~~A~~~~~~al---~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      +.+.|+.+|.+++   .++|..+.++-.++.++...         ....+|.++.+++++++|.|+.  ....+|.++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~--a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK--ILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHh
Confidence            4567999999999   99999999999999888665         2345777788899999998764  34447887888


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      .|+++.|+..+++|+.++                          |+.+.+++..|+++.-.|+.++|+++.++|++++|.
T Consensus       351 ~~~~~~a~~~f~rA~~L~--------------------------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHS--------------------------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             hcchhhHHHHHHHHhhcC--------------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            899999999999999985                          467889999999999999999999999999999998


Q ss_pred             cHH--HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          192 ANK--ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       192 ~~~--~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      -..  ...+-.-..-....++|+..|-+-.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            764  55665523345667888888866444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.4e-07  Score=84.24  Aligned_cols=214  Identities=12%  Similarity=0.049  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHcCCHHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEA--AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~--A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      .++....+.-.++...  +..++-.-.+.-|++.+.+..+|.++...|++++|+..|+++..++|...  ..--..|.++
T Consensus       199 ~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i--~~MD~Ya~LL  276 (564)
T KOG1174|consen  199 KWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV--EAMDLYAVLL  276 (564)
T ss_pred             HHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh--hhHHHHHHHH
Confidence            4444444444555444  44555555667788999999999999999999999999999999999621  1222346677


Q ss_pred             HHcCCHHHHHHHHHHHHHhhch--hhhhc-CcchhHHhhhhhh-----HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQ--GEAFN-GKPTKTARSHGKK-----FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~--~~~~~-~~~~~~~~~~~~~-----~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      ...|+++.-..+-...+.+...  ..++. +......+.....     ..+.++|.+..++..-|.++.++||.++|+-+
T Consensus       277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia  356 (564)
T KOG1174|consen  277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA  356 (564)
T ss_pred             HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence            8999999888888888777532  23333 1110000001111     11567788999999999999999999999999


Q ss_pred             HHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CC----CcchhhHHHHHHHHHHHHhcCC
Q 022442          182 YQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PG----CEDGRTRKRAEELLLELESKQP  247 (297)
Q Consensus       182 y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~--------~~----~~~~~~~~~a~~~l~~~~~~~~  247 (297)
                      ||.|..+.|-... +-.|-.+|...|++.||...-+.+...-+        .+    .+++...++|...+..-....|
T Consensus       357 FR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P  435 (564)
T KOG1174|consen  357 FRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP  435 (564)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence            9999999999998 88999999999999999988887765411        11    1234455566666665544444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.91  E-value=9.3e-08  Score=93.00  Aligned_cols=140  Identities=12%  Similarity=-0.082  Sum_probs=100.0

Q ss_pred             HcCCChHHHH--HHHHHHHHHCCC---hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Q 022442           57 NAGDRVDSAL--KDMAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK--------VEEQIEMLK  123 (297)
Q Consensus        57 ~~~p~~~~a~--~~Lg~~l~~~g~---~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~--------~~eAi~~~~  123 (297)
                      ...|.++++|  +..|.-+...+.   +.+|+.+|+++++++|+++..  +..++.+|.....        ...+....+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a--~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYA--QAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            4456665554  445666665544   789999999999999986432  2223444433221        223333333


Q ss_pred             HHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          124 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       124 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                      +++.+                        ...|..+.++.-+|..+...|++++|...|++|++++|+ .. +..+|.++
T Consensus       409 ~a~al------------------------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~  463 (517)
T PRK10153        409 NIVAL------------------------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY  463 (517)
T ss_pred             Hhhhc------------------------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence            33222                        123456678888999999999999999999999999996 55 88999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC
Q 022442          203 IKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       203 ~~~g~~~eA~~~~~~al~~~~  223 (297)
                      ...|++++|++.|++++...|
T Consensus       464 ~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        464 ELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHcCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999843

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=1.6e-07  Score=91.40  Aligned_cols=175  Identities=15%  Similarity=0.073  Sum_probs=127.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      +.-.....|=...|+..|++        .+.|-....+|...|+..+|..+.++-++..|+   ..++..||++....--
T Consensus       404 laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d---~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD---PRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc---chhHHHhhhhccChHH
Confidence            34455677888888888886        356778888999999999999999888885444   2566667777666555


Q ss_pred             HHHHHHHHHHHHHhhchhhhhcCcch--hHHhhhhhhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          115 VEEQIEMLKRKLRLIYQGEAFNGKPT--KTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      |++|.++.+..-....  ..++....  .......+.+.  ++++|-...+|+++|.+..+++++..|..+|.+++.++|
T Consensus       473 yEkawElsn~~sarA~--r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  473 YEKAWELSNYISARAQ--RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HHHHHHHhhhhhHHHH--HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            5666555554333210  01000000  00111112222  577888889999999999999999999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++.. |.||+.+|++.|+..+|...+.+++..+
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9998 9999999999999999999999999874

>PRK15331 chaperone protein SicA; Provisional

Probab=98.90  E-value=3.2e-08  Score=80.95  Aligned_cols=116  Identities=9%  Similarity=-0.008  Sum_probs=95.9

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      +.++.-+..+..|.-+.++|++++|...|+-+...+|.+.  ....-||.++..+|+|++|+..|--+..+.        
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--------  101 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTLL--------  101 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence            4455667788899999999999999999999999999754  344558999999999999999999988773        


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHH
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCL  202 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l  202 (297)
                                        ++++...+..|.||..+|+.+.|..+|..|+. .|.+......+..+
T Consensus       102 ------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~  147 (165)
T PRK15331        102 ------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY  147 (165)
T ss_pred             ------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence                              34666789999999999999999999999999 57766544444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.90  E-value=3.4e-07  Score=76.08  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=124.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      .=|++....-..+.+...|.+.. ...||+.+...||+.||...|++++. +.-.++.  +..-++...+..+++.+|..
T Consensus        69 ~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a--~lLglA~Aqfa~~~~A~a~~  145 (251)
T COG4700          69 KLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAA--MLLGLAQAQFAIQEFAAAQQ  145 (251)
T ss_pred             hcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH--HHHHHHHHHHhhccHHHHHH
Confidence            34677777777777777777654 67899999999999999999999875 3334433  33347788999999999999


Q ss_pred             HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHH
Q 022442          121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGL  200 (297)
Q Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~  200 (297)
                      .+++..+..|..                        ..++.+.-+|.+|..+|++.+|+..|+.++...|+....+-.+.
T Consensus       146 tLe~l~e~~pa~------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e  201 (251)
T COG4700         146 TLEDLMEYNPAF------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE  201 (251)
T ss_pred             HHHHHhhcCCcc------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999876521                        13456777899999999999999999999999999888777899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 022442          201 CLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       201 ~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+.++|+..+|..-+..+...
T Consensus       202 ~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         202 MLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HHHHhcchhHHHHHHHHHHHH
Confidence            999999999998888777764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.2e-07  Score=90.30  Aligned_cols=198  Identities=18%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHH
Q 022442           22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL  101 (297)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l  101 (297)
                      +...|++.+++.+.-...+..+.+++|+.+.++-....-.+ .-.+.-+.+..++|+.++|+..++   ..++.+  ..+
T Consensus        39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~--~~l  112 (652)
T KOG2376|consen   39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLD--DKL  112 (652)
T ss_pred             HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccc--hHH
Confidence            33344443444433334455567777774444322111111 111566788888888888888877   233321  123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh--hhc-CcchhHHhhhhhhHH-HhcCCC-cHHHHHHHHHHHHHCCChH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AFN-GKPTKTARSHGKKFQ-VSVRQE-TSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~--~~~-~~~~~~~~~~~~~~~-~~l~p~-~~~~l~nLg~~y~~~g~~~  176 (297)
                      .-+-+.++.++|+|++|.++|+..++-.-++.  -.. +.............+ +.+.|+ .-+.++|.+.++...|+|.
T Consensus       113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~  192 (652)
T KOG2376|consen  113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN  192 (652)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence            33357788899999999999999887643210  000 000000111111111 233344 5578999999999999999


Q ss_pred             HHHHHHHHHHHh-------CCCc---H-----H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 022442          177 AAEVVYQKAQMI-------DPDA---N-----K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG  225 (297)
Q Consensus       177 eA~~~y~~Al~~-------~P~~---~-----~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~  225 (297)
                      +|++.+++|+++       +-.+   .     . ...|+.+|..+|+.+||..+|..++...+.+
T Consensus       193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            999999999543       1111   1     1 3569999999999999999999999874443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.89  E-value=3.7e-08  Score=96.23  Aligned_cols=130  Identities=16%  Similarity=0.080  Sum_probs=115.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      -+....+..++|.-++..+-.++|-.+..++..|.++...|.+.||.++|..++.++|++.  .....+|.++.+.|+..
T Consensus       658 ~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle~G~~~  735 (799)
T KOG4162|consen  658 DLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLELGSPR  735 (799)
T ss_pred             HHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhCCcc
Confidence            3455678888999999999999999999999999999999999999999999999999854  34455899999999888


Q ss_pred             HHHH--HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          117 EQIE--MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       117 eAi~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      -|..  .+..++++.                          |.++++|++||.++..+|+.++|..+|.-|+++++.+|.
T Consensus       736 la~~~~~L~dalr~d--------------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  736 LAEKRSLLSDALRLD--------------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             hHHHHHHHHHHHhhC--------------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            8877  888888874                          568899999999999999999999999999999999884

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.88  E-value=6.8e-08  Score=75.75  Aligned_cols=101  Identities=21%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      .+++++|.++..+|+.++|+..|++++...++.. .......+|..|...|++++|+..+++++...|.+.         
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~---------   72 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE---------   72 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence            4567777777777777777777777777655421 122334467777777777777777777776544210         


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                                    -+..+...++.++...|+++||+..+-.++.
T Consensus        73 --------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 --------------LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             --------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                          0233455567777777777777777776664

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.88  E-value=7.8e-09  Score=96.75  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++.   . ++|+|.+|..+|++++|+..++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999997   3 899999999999999999999999986

>PLN03077 Protein ECB2; Provisional

Probab=98.86  E-value=2.3e-07  Score=95.93  Aligned_cols=199  Identities=13%  Similarity=0.092  Sum_probs=101.9

Q ss_pred             cchhhhhhhhhcCC--CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           13 SKKEDLFHVIHKVP--AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ......+..+.+..  ++...+..+...+.+.|+.++|...|++...   .+..+|..+...|.+.|+.++|+..|++..
T Consensus       406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~  482 (857)
T PLN03077        406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQML  482 (857)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33445555555543  2333455556677788888888888876433   234467778888888888888888888776


Q ss_pred             hh-CCcchH--------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-
Q 022442           91 GL-CSKQSQ--------------------------------ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-  136 (297)
Q Consensus        91 ~~-~P~~~~--------------------------------~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-  136 (297)
                      .. .|+...                                ..+.+.|.+.|.+.|++++|...|++.   .++-..|+ 
T Consensus       483 ~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~  559 (857)
T PLN03077        483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNI  559 (857)
T ss_pred             hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHH
Confidence            42 343110                                011223445556666666666655553   11111111 


Q ss_pred             --------CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCcHHHhHHHHHHHHc
Q 022442          137 --------GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPDANKACNLGLCLIKR  205 (297)
Q Consensus       137 --------~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~---~P~~~~~~nLg~~l~~~  205 (297)
                              |.......-........+.|+. .++..+-.+|...|++++|..+|+...+.   .|+...+..+..+|.+.
T Consensus       560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~  638 (857)
T PLN03077        560 LLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA  638 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence                    0000000000000001233332 23444445566666666666666665532   33332345566666666


Q ss_pred             CCHHHHHHHHHHH
Q 022442          206 TRYNEARSVLEDV  218 (297)
Q Consensus       206 g~~~eA~~~~~~a  218 (297)
                      |++++|...+++.
T Consensus       639 G~~~eA~~~~~~m  651 (857)
T PLN03077        639 GKLTEAYNFINKM  651 (857)
T ss_pred             CCHHHHHHHHHHC
Confidence            6666666666553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.82  E-value=7.1e-08  Score=85.98  Aligned_cols=100  Identities=11%  Similarity=0.004  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLID  107 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~  107 (297)
                      |..+..+.+..|++++|+..|++.++..|+.   +.+++.+|.+|...|++++|+..|++++...|++. .......+|.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            3333334466899999999999999999987   58999999999999999999999999999999732 2234455799


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhch
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~  131 (297)
                      +|..+|++++|+..|+++++..|.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcC
Confidence            999999999999999999998774

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=3.5e-08  Score=95.96  Aligned_cols=177  Identities=16%  Similarity=0.096  Sum_probs=121.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      .++...|+..+|....++-++ .|+++-.|-.+|-+.+...-|++|.++.+..-..        ....+|......++|.
T Consensus       432 ~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  432 LCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHH
Confidence            345667788888888887777 5666666666676666666566665554332111        1112233334467777


Q ss_pred             HHHHHHHHHHHhhch--hhhhc-Ccc-hhHHhhhhh--hH--HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          117 EQIEMLKRKLRLIYQ--GEAFN-GKP-TKTARSHGK--KF--QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       117 eAi~~~~~al~~~p~--~~~~~-~~~-~~~~~~~~~--~~--~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ++..+++..++++|-  +-+|. |.. .++.+....  .|  -+.++|++..+|+|++.+|..+|+-.+|...+++|++.
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            777777777777652  23332 211 011111111  12  25778899999999999999999999999999999999


Q ss_pred             CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      +-++.. |-|.-.+..+.|.+++|+..|.+.+..+
T Consensus       583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            977887 9999999999999999999999998763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.79  E-value=1e-08  Score=73.90  Aligned_cols=64  Identities=30%  Similarity=0.320  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+.++.++|.+|..+|++++|+.+|++++++    .++++   . +.++|.++..+|++++|+.+++++++.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4568999999999999999999999999976    23333   3 679999999999999999999999874

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=3.8e-07  Score=80.87  Aligned_cols=181  Identities=15%  Similarity=0.078  Sum_probs=139.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      .+..+.+.+++.|++++.--.+.+|.....+..||.+|....+|.+|.++|+++-.+.|...+..++  -+..+.+.+.+
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A~i~   94 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKACIY   94 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHhccc
Confidence            3445788999999999999999999999999999999999999999999999999999985443443  35556788999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcC--cchh-HHhhhh----hhHHHhcCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNG--KPTK-TARSHG----KKFQVSVRQ--ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~--~~~~-~~~~~~----~~~~~~l~p--~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .+|+.+....... |.  ..+.  .+.. +.-+.+    ....+.--|  +.+++.+|.|.+..+.|+|++|.+-|+.|+
T Consensus        95 ADALrV~~~~~D~-~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl  171 (459)
T KOG4340|consen   95 ADALRVAFLLLDN-PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL  171 (459)
T ss_pred             HHHHHHHHHhcCC-HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence            9999877665442 10  0000  0000 000000    011123334  567899999999999999999999999999


Q ss_pred             HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +..--++- .+|++.+..+.|+++.|+.+..++++.
T Consensus       172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            99998888 999999999999999999999998876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.2e-07  Score=87.24  Aligned_cols=106  Identities=21%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      -|+.|++.|+|..|+..|++++...+....+..       ....... +   --..++.||+.||..+++|.+|+....+
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-------ee~~~~~-~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-------EEQKKAE-A---LKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-------HHHHHHH-H---HHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            467789999999999999999997542111110       0000000 0   0113789999999999999999999999


Q ss_pred             HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+++|+|.. ++.-|.++..+|+|+.|+..|++++..
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            9999999998 999999999999999999999999998

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=4.6e-08  Score=68.35  Aligned_cols=53  Identities=26%  Similarity=0.448  Sum_probs=49.5

Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|++++|+..|++++..+|++.. ++.||.+|.+.|++++|..++++++..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999998 999999999999999999999999986

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=6.6e-08  Score=67.55  Aligned_cols=65  Identities=22%  Similarity=0.149  Sum_probs=56.6

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI  106 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~  106 (297)
                      +..|++++|+..|++++..+|++.+++..+|.+|..+|++++|...+++++..+|++  ..+...++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHh
Confidence            578999999999999999999999999999999999999999999999999999984  23444343

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.1e-07  Score=85.52  Aligned_cols=127  Identities=15%  Similarity=0.095  Sum_probs=109.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHH------------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDS------------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNV  104 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~------------a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~  104 (297)
                      ..-..+.+.|+..|+++++++|++..            .+..-|+-..+.|++.+|.+.|..++.++|.+  ....++..
T Consensus       213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            33478899999999999999998643            45667899999999999999999999999973  34456667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      .+.+..+.|+..+|+.-.+.++++++                          ....++...|.|+..+++|++|.+.|++
T Consensus       293 ra~v~~rLgrl~eaisdc~~Al~iD~--------------------------syikall~ra~c~l~le~~e~AV~d~~~  346 (486)
T KOG0550|consen  293 RALVNIRLGRLREAISDCNEALKIDS--------------------------SYIKALLRRANCHLALEKWEEAVEDYEK  346 (486)
T ss_pred             hHhhhcccCCchhhhhhhhhhhhcCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999854                          2335788899999999999999999999


Q ss_pred             HHHhCCC
Q 022442          185 AQMIDPD  191 (297)
Q Consensus       185 Al~~~P~  191 (297)
                      |++..-+
T Consensus       347 a~q~~~s  353 (486)
T KOG0550|consen  347 AMQLEKD  353 (486)
T ss_pred             HHhhccc
Confidence            9998877

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.70  E-value=1.7e-06  Score=89.87  Aligned_cols=168  Identities=14%  Similarity=0.019  Sum_probs=126.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLI  106 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~  106 (297)
                      +.++...|++++|..++++++...|..     ..++..+|.++...|++++|...+++++.....    .........++
T Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            456678999999999999999854432     235678999999999999999999998865432    11122345678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .++...|++++|...+++++.+...              .+..-    .+....++..+|.++...|++++|...+++++
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~--------------~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEE--------------QHLEQ----LPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHH--------------hcccc----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            9999999999999999999987421              00000    00012346678999999999999999999999


Q ss_pred             HhCCC----c-HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          187 MIDPD----A-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       187 ~~~P~----~-~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+...    . .. +..+|.++...|++++|...++++...
T Consensus       601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            86432    2 23 557899999999999999999988653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.69  E-value=1.1e-07  Score=67.30  Aligned_cols=62  Identities=24%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .+|.+.+++++|+.++++++.+.|                          +++..+..+|.+|..+|++++|+..|++++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP--------------------------DDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc--------------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            455666666666666666666533                          344556666666666666666666666666


Q ss_pred             HhCCCcHH
Q 022442          187 MIDPDANK  194 (297)
Q Consensus       187 ~~~P~~~~  194 (297)
                      +..|+++.
T Consensus        57 ~~~p~~~~   64 (73)
T PF13371_consen   57 ELSPDDPD   64 (73)
T ss_pred             HHCCCcHH
Confidence            66666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.69  E-value=9.3e-08  Score=89.64  Aligned_cols=71  Identities=10%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      .+|++++++.++|.+|..+|++++|+..|+++++++|++... ..++++|.+|..+|++++|+++|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467777788888888888888888888888888888874321 23455777788888888888888888776

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.68  E-value=6.8e-06  Score=67.64  Aligned_cols=191  Identities=25%  Similarity=0.291  Sum_probs=116.5

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI  106 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~  106 (297)
                      ..............+++..+...+...+.  ..+.....+..+|..+...+.+.+++..+..++...+...  ......+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  136 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLA  136 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHH
Confidence            44566666777788999999999999887  7888888999999999999999999999999998777531  1222233


Q ss_pred             H-HHHHcCCHHHHHHHHHHHHHhhch--hhh--hc--CcchhHHhhhhh---hHH--HhcCCC-cHHHHHHHHHHHHHCC
Q 022442          107 D-LYKKCGKVEEQIEMLKRKLRLIYQ--GEA--FN--GKPTKTARSHGK---KFQ--VSVRQE-TSRLLGNLAWAYMQKT  173 (297)
Q Consensus       107 ~-ly~~~g~~~eAi~~~~~al~~~p~--~~~--~~--~~~~~~~~~~~~---~~~--~~l~p~-~~~~l~nLg~~y~~~g  173 (297)
                      . ++...|++++|+..|.+++...|.  ...  ..  ............   .+.  +.+.+. ....+.+++.++...+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            4 788999999999999999775431  100  00  000000000000   000  222333 3445555555555555


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+..+.+++...|+... +..++..+...|.++++...+.+++..
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555555555555555333 444444444444555555555555554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.68  E-value=5.3e-08  Score=83.11  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcC
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQ  246 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~  246 (297)
                      ...+.++.+.|.+.|.+|+++.|+... |..+|..-.+.|+++.|...|+++++.   ++++..   -+..-|+.+....
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l---dp~D~~---gaa~kLa~lg~~e   77 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL---DPEDHG---GAALKLAVLGRGE   77 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC---Cccccc---chhhhHHhhcCCC
Confidence            456789999999999999999999998 999999999999999999999999998   454332   3677788887767


Q ss_pred             CCCchhhhhcccchhHHHHHHHHHHhhcCcccC
Q 022442          247 PPPDLSDLLGLNLEDEFVNGLEEMVRVWAPSRS  279 (297)
Q Consensus       247 ~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~yr~  279 (297)
                      .|..+++.|+..+||.|++.|+..|...++|+.
T Consensus        78 ~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v  110 (287)
T COG4976          78 TPEKPPSAYVETLFDQYAERFDHILVDKLGYSV  110 (287)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            778888899999999999999999887667773

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.67  E-value=9.9e-08  Score=68.66  Aligned_cols=70  Identities=26%  Similarity=0.389  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ...+.+|.+|..+|++++|+..|++++++..              ..+..     .|+.+.+++++|.+|..+|++++|+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~   66 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEE--------------QLGDD-----HPDTANTLNNLGECYYRLGDYEEAL   66 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--------------HTTTH-----HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------HHCCC-----CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4556689999999999999999999998721              01110     0123468999999999999999999


Q ss_pred             HHHHHHHHh
Q 022442          180 VVYQKAQMI  188 (297)
Q Consensus       180 ~~y~~Al~~  188 (297)
                      .+|++|+++
T Consensus        67 ~~~~~al~i   75 (78)
T PF13424_consen   67 EYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999986

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.64  E-value=6.2e-08  Score=89.01  Aligned_cols=188  Identities=18%  Similarity=0.155  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH------HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCcchHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAI------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~~~~~~l  101 (297)
                      |-++|..+.--+|+++|+++-.-=|      .-.-..+.+--+||+++...|+|++|+..+.+-+.    ++..-.....
T Consensus        58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA  137 (639)
T KOG1130|consen   58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA  137 (639)
T ss_pred             HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence            5666666666666666666543222      22223444445666666666666666666555333    2222111223


Q ss_pred             HHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhch-------hhhhc--Cc-------chhHHhh
Q 022442          102 DNVLIDLYKKCGK--------------------VEEQIEMLKRKLRLIYQ-------GEAFN--GK-------PTKTARS  145 (297)
Q Consensus       102 ~~~L~~ly~~~g~--------------------~~eAi~~~~~al~~~p~-------~~~~~--~~-------~~~~~~~  145 (297)
                      .++||.+|...|+                    ++.|.+.|..-|++...       +.+|-  |+       .......
T Consensus       138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~  217 (639)
T KOG1130|consen  138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF  217 (639)
T ss_pred             HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence            3446666666654                    34556666666665321       11110  00       0000000


Q ss_pred             hhhhHHHhcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC----CcH--H-HhHHHHHHHHcCCHHHHH
Q 022442          146 HGKKFQVSVRQE------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP----DAN--K-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       146 ~~~~~~~~l~p~------~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P----~~~--~-~~nLg~~l~~~g~~~eA~  212 (297)
                      |..  .+.|..+      --+++.|||.+|.-+|+++.|+++|++++.+.-    ...  . .+.||+.|.-...++.|+
T Consensus       218 H~~--RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI  295 (639)
T KOG1130|consen  218 HKL--RLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI  295 (639)
T ss_pred             HHH--HHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            000  0111111      124788999999999999999999999876532    222  2 578899888888999999


Q ss_pred             HHHHHHHhc
Q 022442          213 SVLEDVLYG  221 (297)
Q Consensus       213 ~~~~~al~~  221 (297)
                      .++.+-+.+
T Consensus       296 ~Yh~rHLaI  304 (639)
T KOG1130|consen  296 TYHQRHLAI  304 (639)
T ss_pred             HHHHHHHHH
Confidence            888876654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.64  E-value=1.8e-07  Score=66.26  Aligned_cols=57  Identities=32%  Similarity=0.407  Sum_probs=54.6

Q ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |..+|.+.+++++|+.++++++.++|+++. +..+|.++..+|++++|...++++++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998 999999999999999999999999997

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.63  E-value=2.2e-07  Score=85.40  Aligned_cols=186  Identities=20%  Similarity=0.168  Sum_probs=126.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLID  107 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~  107 (297)
                      |....+.||....+.+|++|++....+-    .++-.||++|.-+++|++|++.-..-    ..++..........+||+
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            4456688999999999999999887753    34667899999999999999864432    222222111112233788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhch-------h-hhhc-C-------cchhHH-----hhhh-----------hhHH--Hh
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQ-------G-EAFN-G-------KPTKTA-----RSHG-----------KKFQ--VS  153 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~-------~-~~~~-~-------~~~~~~-----~~~~-----------~~~~--~~  153 (297)
                      .+.-.|+|++|+-+..+-|.+...       + +.|| +       +...+.     ...+           +.+.  ++
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999998887421       1 1222 1       100000     0000           0011  11


Q ss_pred             cCC--C----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          154 VRQ--E----TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       154 l~p--~----~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      +-.  .    .-+++.|||..|.-+|+|+.|+..-+.-|.+.-...      . +.|||+|++-+|+++.|+++|++.+.
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            111  1    124678999999999999999999999888865443      2 46899999999999999999998775


Q ss_pred             c
Q 022442          221 G  221 (297)
Q Consensus       221 ~  221 (297)
                      .
T Consensus       264 L  264 (639)
T KOG1130|consen  264 L  264 (639)
T ss_pred             H
Confidence            4

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=6.8e-06  Score=85.36  Aligned_cols=168  Identities=14%  Similarity=-0.043  Sum_probs=125.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch---HHHH
Q 022442           34 RAKHAQLVQKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS---QESL  101 (297)
Q Consensus        34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~---~~~l  101 (297)
                      ....+....|++++|..+++++...-+.         ...+...+|.++...|++++|...+++++...|...   ....
T Consensus       414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a  493 (903)
T PRK04841        414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA  493 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3445566789999999999988763211         234556678899999999999999999988655421   1123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      .+.+|.++...|++++|...+++++.....              .+....      ...++.++|.++...|++++|..+
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~--------------~g~~~~------~~~~~~~la~~~~~~G~~~~A~~~  553 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQ--------------HDVYHY------ALWSLLQQSEILFAQGFLQAAYET  553 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--------------hcchHH------HHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456788899999999999999999987321              111000      123678899999999999999999


Q ss_pred             HHHHHHhCC-----Cc---HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          182 YQKAQMIDP-----DA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       182 y~~Al~~~P-----~~---~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++++++..     +.   .. ...+|.++...|++++|...+++++..
T Consensus       554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            999998632     11   12 457899999999999999999998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=1e-06  Score=79.77  Aligned_cols=149  Identities=17%  Similarity=0.078  Sum_probs=100.8

Q ss_pred             hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCC
Q 022442           17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi~~~~~al~~~P   94 (297)
                      ++...+++. ..-....-..++++.-++++.|.+.++..-+.+++..-+....+.+....|  ++.+|.-.|+......|
T Consensus       120 ~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~  198 (290)
T PF04733_consen  120 EALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG  198 (290)
T ss_dssp             HHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred             HHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence            444444444 122233334567778888888888888877777664433333333444444  68888888888777765


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442           95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN  174 (297)
Q Consensus        95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~  174 (297)
                      ..  ..+.+.++.++..+|++++|...+++++...                          |.+++++.|+..+...+|+
T Consensus       199 ~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------------------------~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  199 ST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------------------------PNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             -S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-
T ss_pred             CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------------------------cCCHHHHHHHHHHHHHhCC
Confidence            52  2455567788888889999888888877653                          5678899999999999999


Q ss_pred             h-HHHHHHHHHHHHhCCCcHH
Q 022442          175 F-MAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       175 ~-~eA~~~y~~Al~~~P~~~~  194 (297)
                      . +.+.++..+....+|+++-
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSHH
T ss_pred             ChhHHHHHHHHHHHhCCCChH
Confidence            9 5677788888889999885

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK11906 transcriptional regulator; Provisional

Probab=98.60  E-value=2.1e-06  Score=80.75  Aligned_cols=139  Identities=9%  Similarity=0.061  Sum_probs=104.2

Q ss_pred             HHHcCCChH---HHH----HHHHHHHHHCC---ChHHHHHHHHHHH---hhCCcchHHHHHHHHHHHHHHc---------
Q 022442           55 AINAGDRVD---SAL----KDMAVVMKQLD---RSEEAIEAIKSFR---GLCSKQSQESLDNVLIDLYKKC---------  112 (297)
Q Consensus        55 al~~~p~~~---~a~----~~Lg~~l~~~g---~~~eAi~~~~~al---~~~P~~~~~~l~~~L~~ly~~~---------  112 (297)
                      +....|.+.   ++|    +..|.....++   ..+.|..+|.+++   .++|+.+  ..+..++.++...         
T Consensus       240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a--~a~~~lA~~h~~~~~~g~~~~~  317 (458)
T PRK11906        240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT--ECYCLLAECHMSLALHGKSELE  317 (458)
T ss_pred             hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH--HHHHHHHHHHHHHHHhcCCCch
Confidence            344445544   444    45565554444   4567888899999   8999743  2333345444332         


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      ....+|..+-++|+++                          +|+++.++..+|.++...|+++.|+..|++|+.++|+.
T Consensus       318 ~~~~~a~~~A~rAvel--------------------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        318 LAAQKALELLDYVSDI--------------------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI  371 (458)
T ss_pred             HHHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence            2334555555555554                          56788899999999999999999999999999999999


Q ss_pred             HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          193 NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       193 ~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +. ++-.|.+..-.|+.++|....++++..
T Consensus       372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        372 ASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            98 999999999999999999999999997

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=9.3e-07  Score=77.72  Aligned_cols=106  Identities=15%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  144 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~  144 (297)
                      .++.|.-+.+.|+|.+|+..|...++..|+.. ..+..+-||.++..+|++++|...|..+++-.|.             
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-------------  210 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-------------  210 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence            67777777788888888888888888777531 1133344677777777777777777777776542             


Q ss_pred             hhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          145 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                .|.-+++++-||.+..++|+.++|...|+++++..|+...
T Consensus       211 ----------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         211 ----------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             ----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence                      1334567777777777777777777777777777777664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.58  E-value=2e-05  Score=64.78  Aligned_cols=176  Identities=24%  Similarity=0.227  Sum_probs=110.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRG--LCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~--~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      .+....+...+...+...+.  ........+..+...+.+..++..+.....  ..+.  ........+..+...+.+.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  113 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--LAEALLNLGLLLEALGKYEE  113 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHhhHHH
Confidence            57788899999999998887  477889999999999999999999999886  4454  22445557888899999999


Q ss_pred             HHHHHHHHHHhhchhhh---------h-c-CcchhHHhhhhhhHHHhcCC---CcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          118 QIEMLKRKLRLIYQGEA---------F-N-GKPTKTARSHGKKFQVSVRQ---ETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~---------~-~-~~~~~~~~~~~~~~~~~l~p---~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ++..+.+++...+....         + . +......... ... +.+.|   ........++..+...+++++|+..+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  191 (291)
T COG0457         114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY-EKA-LELDPELNELAEALLALGALLEALGRYEEALELLE  191 (291)
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHH-HHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence            99999999986542100         0 0 0000000000 000 12222   233344444445555556666666666


Q ss_pred             HHHHhCCC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++...|+ ... ..+++.++...|++++|...+..++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL  231 (291)
T ss_pred             HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence            66655555 344 555555555555566666555555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.58  E-value=1.9e-06  Score=69.08  Aligned_cols=108  Identities=19%  Similarity=0.119  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      +..++.-|....+.|+|.+|++.|+.+....|.. ........|+.+|.+.|++++|+..+++-|+++|.          
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~----------   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT----------   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence            4556777777777888888888888877777742 11234455777788888888888888888877662          


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHhCCCcH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN---------------FMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~---------------~~eA~~~y~~Al~~~P~~~  193 (297)
                                   .|+-+.+++..|.++.++..               ..+|...|++.+...|++.
T Consensus        80 -------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   80 -------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             -------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence                         12234466777777777665               7788888888888888876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.58  E-value=2.3e-06  Score=80.27  Aligned_cols=115  Identities=20%  Similarity=0.140  Sum_probs=99.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ...++++.|+.++++..+.+|.   +...++.++...++-.+|+..+.+++..+|.++  .+....+..+...|+++.|+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHH
Confidence            3568999999999999988876   455689999999999999999999999999853  45566788999999999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      .+.++++.+.|                          +.-..|..|+.+|..+|++++|+..+..+
T Consensus       255 ~iAk~av~lsP--------------------------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  255 EIAKKAVELSP--------------------------SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhCc--------------------------hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999865                          34468999999999999999999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=2.9e-06  Score=81.16  Aligned_cols=158  Identities=22%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      +.+.-.+.+...|++++|+.-..+.+...|+..++++---++++++++|++|+..++.-....-.   ....+--+.+..
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHH
Confidence            34444556678899999999999999999999999999999999999999999665543222111   112123467778


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-  189 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~-  189 (297)
                      ++++.++|+..++ .+..                            ++..++.--|.++.++|+|++|+..|+..++-+ 
T Consensus        91 rlnk~Dealk~~~-~~~~----------------------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   91 RLNKLDEALKTLK-GLDR----------------------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HcccHHHHHHHHh-cccc----------------------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            9999999999887 2221                            222355667899999999999999999975432 


Q ss_pred             -----------------------------CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          190 -----------------------------PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       190 -----------------------------P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                                                   |++. + .+|.+-+++..|+|.+|++.+++++.
T Consensus       142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                                         3322 4 68999999999999999999999953

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.45  E-value=9.8e-06  Score=63.76  Aligned_cols=90  Identities=19%  Similarity=0.149  Sum_probs=78.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--hHHHHHHHHHHHHHHcCCHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--SQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~~~~l~~~L~~ly~~~g~~~  116 (297)
                      ....|+++.|++.|.++|.+-|..++++.|-+..+.-+|+.++|++-+.+++.+..+.  .....+.--|.+|+.+|+.+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            4467999999999999999999999999999999999999999999999999986542  11233344688999999999


Q ss_pred             HHHHHHHHHHHh
Q 022442          117 EQIEMLKRKLRL  128 (297)
Q Consensus       117 eAi~~~~~al~~  128 (297)
                      .|-.-|+.+-++
T Consensus       133 ~AR~DFe~AA~L  144 (175)
T KOG4555|consen  133 AARADFEAAAQL  144 (175)
T ss_pred             HHHHhHHHHHHh
Confidence            999999998887

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.45  E-value=3.6e-07  Score=58.48  Aligned_cols=41  Identities=27%  Similarity=0.205  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  200 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~  200 (297)
                      .++..+|.+|.++|++++|+++|+++++.+|+++. |..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            47899999999999999999999999999999998 888875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.43  E-value=1.4e-05  Score=77.78  Aligned_cols=138  Identities=16%  Similarity=0.070  Sum_probs=107.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC  112 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~  112 (297)
                      +.+.+.+-..|++++|+.++.+||...|..++.+...|.+|...|++.+|.+.++.+..+++.|  ..+.+-.+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHC
Confidence            3444555578999999999999999999999999999999999999999999999999999974  34555667778999


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      |++++|+.....-.+-.- + ..           .+...+    ...+.....|.+|.+.|++..|+..|..+++.-
T Consensus       276 ~~~e~A~~~~~~Ftr~~~-~-~~-----------~~L~~m----Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDV-D-PL-----------SNLNDM----QCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             CCHHHHHHHHHhhcCCCC-C-cc-----------cCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999987766444310 0 00           000000    012455668999999999999999999999864

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=9.3e-06  Score=73.72  Aligned_cols=174  Identities=20%  Similarity=0.148  Sum_probs=125.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      .+...|+..|+.+++-....+.... +...-+|.++..+|+|++|+..|.-+....  ++...++..|+-+++-.|.|.+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHH
Confidence            4578899999999998887665544 456679999999999999999998876632  2234577778999999999999


Q ss_pred             HHHHHHHHHHhhchh--hhhc-----CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          118 QIEMLKRKLRLIYQG--EAFN-----GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       118 Ai~~~~~al~~~p~~--~~~~-----~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      |..+-.++-+- |-.  -.++     +.-.++.     .|+-.+ +|..+-...|+.++...-.|.+|++.|+++|.-+|
T Consensus       110 A~~~~~ka~k~-pL~~RLlfhlahklndEk~~~-----~fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~  182 (557)
T KOG3785|consen  110 AKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRIL-----TFHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP  182 (557)
T ss_pred             HHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHH-----HHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            99887775432 210  0000     0000000     111111 12223345678888888899999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +... -.+++.||.++.=++-+.+++.--+..
T Consensus       183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q  214 (557)
T KOG3785|consen  183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence            9888 778999999999999998888777764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=5.2e-06  Score=69.85  Aligned_cols=92  Identities=23%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ++..|.|++|..-|..||++.|+-..      .               .-+-.+.|.|.++..+++++.|+.-..+|+++
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~------e---------------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel  163 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTST------E---------------ERSILYSNRAAALIKLRKWESAIEDCSKAIEL  163 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccH------H---------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence            36667777777777777777652100      0               01124566777777777777777777777777


Q ss_pred             CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          189 DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       189 ~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|.+.. +...+.+|.++..|++|+.-|.++++.
T Consensus       164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            777776 555677777777777777777777775

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.38  E-value=6.2e-06  Score=68.36  Aligned_cols=49  Identities=24%  Similarity=0.233  Sum_probs=36.7

Q ss_pred             hcCCCcHHHHHHHHHHHHHCCC-----------hHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          153 SVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~-----------~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                      .|+|+..+++.++|.+|..++.           |++|..+|++|++.+|++.. ...|..+
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4467788899999999988765           78899999999999999987 5555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.37  E-value=8.7e-07  Score=53.16  Aligned_cols=33  Identities=36%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      .+++++|.+|..+|++++|+.+|++|++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.37  E-value=0.00014  Score=63.67  Aligned_cols=186  Identities=15%  Similarity=0.082  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLI  106 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~  106 (297)
                      .++.-+.-.+..|++++|+..|++.....|.   ...+...++.++.+.+++++|+..+++.+.+.|.+.+. -+.++.|
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            4566677788999999999999999887666   45678899999999999999999999999999974322 2334444


Q ss_pred             HHHHH--------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442          107 DLYKK--------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  178 (297)
Q Consensus       107 ~ly~~--------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA  178 (297)
                      ..+..        +....+|+..++..|...|...--.     .+......+.    -..+.-=..+|..|.+.|.+-.|
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-----dA~~~i~~~~----d~LA~~Em~IaryY~kr~~~~AA  186 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-----DAKARIVKLN----DALAGHEMAIARYYLKRGAYVAA  186 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-----hHHHHHHHHH----HHHHHHHHHHHHHHHHhcChHHH
Confidence            44433        2345678888888888877432100     0000000000    00011224589999999999999


Q ss_pred             HHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442          179 EVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  226 (297)
Q Consensus       179 ~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~  226 (297)
                      +.-++++++..|+..   . +.-|..+|..+|-.++|...- ++|..+.+++
T Consensus       187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s  237 (254)
T COG4105         187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence            999999999988775   3 567889999999999997654 4555544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.37  E-value=0.00021  Score=65.80  Aligned_cols=188  Identities=14%  Similarity=0.134  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      +|.-+...+-.-||.+.|-.+..++-+..+ +.-......+.++..+|++..|..-..++....|.+.  .+..+...+|
T Consensus       120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrLa~r~y  197 (400)
T COG3071         120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRLALRAY  197 (400)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHHHHHHH
Confidence            455556667778999999999998888733 2334566778899999999999999999999999743  4555567899


Q ss_pred             HHcCCHHHHHHHHHHHHHhhc---h------hhhhcCcchhHHh--------hhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIY---Q------GEAFNGKPTKTAR--------SHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p---~------~~~~~~~~~~~~~--------~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      .+.|++.+...++.+.-+..-   +      ..++.+.+.....        .+.+... .-...++.+...++.=+.+.
T Consensus       198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l  276 (400)
T COG3071         198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRL  276 (400)
T ss_pred             HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHc
Confidence            999999999888887665421   0      0111111000000        0000000 00013456677778888888


Q ss_pred             CChHHHHHHHHHHHHh-------------------------------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          173 TNFMAAEVVYQKAQMI-------------------------------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~-------------------------------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      |++++|.+..+.+++.                               .|+++. +..||..+.+.+.+.+|..+++.++.
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~  356 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK  356 (400)
T ss_pred             CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            8888888888777753                               477777 78899999999999999999999998


Q ss_pred             c
Q 022442          221 G  221 (297)
Q Consensus       221 ~  221 (297)
                      .
T Consensus       357 ~  357 (400)
T COG3071         357 L  357 (400)
T ss_pred             c
Confidence            6

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=7.4e-05  Score=65.53  Aligned_cols=139  Identities=18%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-------hhhc--
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-------EAFN--  136 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-------~~~~--  136 (297)
                      +..-|.++...|++++|..+......+.-     .+.+  ..++.+..+++-|+..++++..+..+.       +|.+  
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~-----~Al~--VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la  183 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENLEA-----AALN--VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA  183 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence            44447788888888888887766332211     1111  245577888888888888888875321       1111  


Q ss_pred             CcchhHHhhhhhhHH----Hh-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH
Q 022442          137 GKPTKTARSHGKKFQ----VS-VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE  210 (297)
Q Consensus       137 ~~~~~~~~~~~~~~~----~~-l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e  210 (297)
                      ....+    ..+.|.    +. --|-.+.+++..+.|++.+|||+||+..++.||..+|++++ ..|+-.+-...|...+
T Consensus       184 ~ggek----~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  184 TGGEK----IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             ccchh----hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            00000    001111    11 12345667788888888999999999999999988888888 8888888888887766


Q ss_pred             HHHHH
Q 022442          211 ARSVL  215 (297)
Q Consensus       211 A~~~~  215 (297)
                      +..-+
T Consensus       260 ~~~r~  264 (299)
T KOG3081|consen  260 VTERN  264 (299)
T ss_pred             HHHHH
Confidence            65444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.31  E-value=1e-05  Score=71.16  Aligned_cols=100  Identities=13%  Similarity=-0.028  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLID  107 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~  107 (297)
                      ++.+..-+++.||+..|+..|..-++..|+   .+.|++.||.++..+|++++|...|..+.+-.|+... .....-||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            567777778899999999999999998887   4688999999999999999999999999999996321 134445899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhch
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~  131 (297)
                      +...+|+.++|-..|+++++..|.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCC
Confidence            999999999999999999998773

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.31  E-value=1.1e-06  Score=79.19  Aligned_cols=183  Identities=11%  Similarity=-0.032  Sum_probs=131.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      |.-++.+|.+++|+.||.+++..+|-++-.+.|.+.+|.++.+|..|..-+..++.++-.  ....+.--+..-..+|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhH
Confidence            445789999999999999999999999999999999999999999999999999998765  334455556777889999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH-------HH--HHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS-------RL--LGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~-------~~--l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .||..-++.+|++.|....+.-...++..-........-.|...       .+  .-.-|..+...|.++-++.+|-+-+
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~  261 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPR  261 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccc
Confidence            99999999999998853221100000000000000000011111       11  1234777788899999999998888


Q ss_pred             HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+-++.. ..+ +..+.+.-++++++.-.-+++..
T Consensus       262 A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~  296 (536)
T KOG4648|consen  262 ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP  296 (536)
T ss_pred             cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence            77777665 555 77888888999998777666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.29  E-value=4e-05  Score=63.95  Aligned_cols=130  Identities=9%  Similarity=-0.013  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      -++++......|++.+|...|++++. +.-.++..+..++......+++.+|...++.+.+.+|..-..+-...++..|.
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            44556667788999999999999998 56677788889999999999999999999999999985211223445788999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      .+|++.+|...|+.++...|                           .+.+....|..+..+|+.++|-.-|..+.+.
T Consensus       172 a~g~~a~Aesafe~a~~~yp---------------------------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         172 AQGKYADAESAFEVAISYYP---------------------------GPQARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            99999999999999999765                           1234555678889999999998888776653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.29  E-value=1.4e-05  Score=64.01  Aligned_cols=102  Identities=16%  Similarity=0.045  Sum_probs=83.1

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVL  105 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L  105 (297)
                      ..++..+.-.+..|++++|++.++......|-   ...+...||.+|.+.|++++|++.++++++++|.+... -+.+..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            35777788888999999999999998886554   56789999999999999999999999999999974322 233446


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHHhhch
Q 022442          106 IDLYKKCGK---------------VEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus       106 ~~ly~~~g~---------------~~eAi~~~~~al~~~p~  131 (297)
                      |..+..+..               ..+|...|++.|...|.
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence            777777766               88889999998888663

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=9.5e-06  Score=68.31  Aligned_cols=100  Identities=22%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY--------KKCGKVEEQIEMLKRKLRLIYQGEAF  135 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly--------~~~g~~~eAi~~~~~al~~~p~~~~~  135 (297)
                      +.+..-|+-+...|.|++|..-|..++.++|.-..     -.-.++        .+++.++.||....++|++.|     
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-----  165 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-----  165 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----
Confidence            34666799999999999999999999999997221     256543        456788888888888888754     


Q ss_pred             cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                           .+..++...+.+|.++.+|++|+.-|+++++++|....
T Consensus       166 ---------------------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  166 ---------------------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             ---------------------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence                                 34567888999999999999999999999999998654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.26  E-value=8.3e-07  Score=53.53  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=29.1

Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~  212 (297)
                      +|++||+++|+++. +++||.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            48899999999998 999999999999999986

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.26  E-value=2.4e-06  Score=51.00  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      .+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.26  E-value=8.4e-07  Score=53.52  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHH
Q 022442           51 LFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE   84 (297)
Q Consensus        51 ~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~   84 (297)
                      +|++||+++|+++.+|++||.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999999999999999999999999999973

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.23  E-value=0.00014  Score=68.83  Aligned_cols=57  Identities=21%  Similarity=0.104  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhCCCcHH-HhHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442          177 AAEVVYQKAQMIDPDANK-ACNL------GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  241 (297)
Q Consensus       177 eA~~~y~~Al~~~P~~~~-~~nL------g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~  241 (297)
                      .|.+..+||++.+|.-+. ...+      -.-+.+.|+ +||+.+-.--+.       ++++.+.|.+.|..
T Consensus       364 ~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~-------hWk~veGAL~lL~~  427 (539)
T PF04184_consen  364 NAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQ-------HWKRVEGALNLLHC  427 (539)
T ss_pred             HHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHH-------HHhcCHhHHHHHHH
Confidence            477899999999999886 4321      223455665 888877766665       35555556666653

The molecular function of this protein is uncertain.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=3.1e-05  Score=66.09  Aligned_cols=167  Identities=13%  Similarity=-0.016  Sum_probs=95.8

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHH
Q 022442           22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL  101 (297)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l  101 (297)
                      +.--|..+.+|..+|.....+|+++.|.+.|.-.++++|....++.|-|+.+.--||+.-|.+-+.+....+|+++...+
T Consensus        92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L  171 (297)
T COG4785          92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL  171 (297)
T ss_pred             hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence            33446666667777777777777777777777777777777777777777777777777777777777777776554444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHH-HHHHHhhchhhhh-------cCcchh-HHhhhhhhHH---HhcCCCcHHHHHHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEML-KRKLRLIYQGEAF-------NGKPTK-TARSHGKKFQ---VSVRQETSRLLGNLAWAY  169 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~-~~al~~~p~~~~~-------~~~~~~-~~~~~~~~~~---~~l~p~~~~~l~nLg~~y  169 (297)
                      +..|.   ...-+..+|...+ +++.... .+-+-       -|.... ..-.....+.   -.+.....++++.||.-|
T Consensus       172 WLYl~---E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         172 WLYLN---EQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHHHH---HhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            43221   3333455554333 2222221 11110       011000 0000000000   000011245788999999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCc
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      ..+|+.++|...|+-|+..+--+
T Consensus       248 l~~G~~~~A~~LfKLaiannVyn  270 (297)
T COG4785         248 LSLGDLDEATALFKLAVANNVYN  270 (297)
T ss_pred             hccccHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999866543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.20  E-value=0.00028  Score=73.59  Aligned_cols=178  Identities=16%  Similarity=0.167  Sum_probs=136.4

Q ss_pred             ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCh-------HHHHHHHHHHHHHCCChHHH
Q 022442           12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN-AGDRV-------DSALKDMAVVMKQLDRSEEA   82 (297)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~-------~~a~~~Lg~~l~~~g~~~eA   82 (297)
                      .|+-++-| +.+.+-|++.-..-+.....+..++.++|.+..++|+. +++.-       +-|+.||=+.|   |.-+.-
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence            44334444 88888888877777777778889999999999999997 55553       33444544444   566677


Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442           83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  162 (297)
Q Consensus        83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l  162 (297)
                      .+.|+++.+.+..   ..++..|..+|...+++++|.++|+..++..-                          +...+|
T Consensus      1517 ~kVFeRAcqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------------------------q~~~vW 1567 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------------------------QTRKVW 1567 (1710)
T ss_pred             HHHHHHHHHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------------------------chhhHH
Confidence            7899999998854   35677788999999999999999999998631                          123478


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCC--cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~--~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ...|..++.+.+-++|-..+.+||..-|.  +.. .-..+..-.+.|+-+.+..+|+..+..
T Consensus      1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence            88888888888888888888888888887  445 556778888888888888888888776

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.17  E-value=7.1e-05  Score=59.00  Aligned_cols=105  Identities=20%  Similarity=0.172  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      +..-|+.+...|+.++|++.|.+++.+.|..  .+.+|+-+..|+-+|+.++|++-+++++++.-+.       ++..  
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-------trta--  114 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-------TRTA--  114 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------chHH--
Confidence            4556899999999999999999999999984  3677888999999999999999999999984210       1111  


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                   -.++...|.+|..+|+.+.|..-|..|-++...+..
T Consensus       115 -------------cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  115 -------------CQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR  150 (175)
T ss_pred             -------------HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence                         136788999999999999999999999988776653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.11  E-value=0.00033  Score=67.74  Aligned_cols=156  Identities=21%  Similarity=0.211  Sum_probs=117.1

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHH-------H--HH-H--HCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMA-------V--VM-K--QLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg-------~--~l-~--~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      -.||-+.++.+++++.+ .++.-.++-.|.       .  .+ .  .....+.|.+++.......|+..  -+....|.+
T Consensus       200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~  276 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRL  276 (468)
T ss_pred             cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Confidence            46999999999999988 333222211111       1  11 1  34567889999999999999843  344557899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      +...|+.++|++.|++++....               ..+.+       ..-.++.+|+++.-+++|++|..+|.+.++.
T Consensus       277 ~~~~g~~~~Ai~~~~~a~~~q~---------------~~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  277 ERLKGNLEEAIESFERAIESQS---------------EWKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHhcCHHHHHHHHHHhccchh---------------hHHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            9999999999999999886321               00101       1236789999999999999999999999998


Q ss_pred             CCCcHH--HhHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 022442          189 DPDANK--ACNLGLCLIKRTRY-------NEARSVLEDVLYG  221 (297)
Q Consensus       189 ~P~~~~--~~nLg~~l~~~g~~-------~eA~~~~~~al~~  221 (297)
                      +.-...  .+-.|.|+...|+.       ++|...++++-..
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            887665  56789999999999       8888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.4e-05  Score=68.99  Aligned_cols=90  Identities=19%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.-|....+|+.||.+|-++|.++|.                          .+..+.|-+.||+++.+++....-.++|
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~--------------------------~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPT--------------------------VASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCC--------------------------cchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            44456778999999999999999762                          3456789999999999999999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+... .+-||.++.....|++|+..+.++...
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999999998 999999999999999999999999654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0016  Score=57.34  Aligned_cols=158  Identities=18%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT  142 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~  142 (297)
                      .+...++..+..-++.++=+....+.+...-......+...-+.+|...|++++|+.+..+...+.  -.+.+ ....+.
T Consensus        73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~  150 (299)
T KOG3081|consen   73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKM  150 (299)
T ss_pred             HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHH
Confidence            345666777766677777666555544332222232444556789999999999999988844431  11111 001110


Q ss_pred             Hhhh--hhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHH
Q 022442          143 ARSH--GKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVL  215 (297)
Q Consensus       143 ~~~~--~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~  215 (297)
                      -+..  .+.......-+...++..|+.+|..    .+++.+|.-+|+.--+..|-.+. ....+.|.+.+||++||..++
T Consensus       151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence            0000  0111112223455678888888755    36899999999999885565565 888999999999999999999


Q ss_pred             HHHHhcCC
Q 022442          216 EDVLYGRI  223 (297)
Q Consensus       216 ~~al~~~~  223 (297)
                      +.+|...+
T Consensus       231 ~eaL~kd~  238 (299)
T KOG3081|consen  231 EEALDKDA  238 (299)
T ss_pred             HHHHhccC
Confidence            99999733

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.06  E-value=0.00072  Score=59.24  Aligned_cols=136  Identities=20%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      ++-|++-|....+.|++++|+..|+++....|.. ........++..+.+.|++++|+...++-+.+.|..         
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~---------  104 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH---------  104 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC---------
Confidence            4568888999999999999999999999999963 223455668899999999999999999999997721         


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHH--------CCChHHHHHHHHHHHHhCCCcHH---H---------------
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQ--------KTNFMAAEVVYQKAQMIDPDANK---A---------------  195 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~--------~g~~~eA~~~y~~Al~~~P~~~~---~---------------  195 (297)
                                    |+-..+++..|.++..        +.--.+|+..|+..+...|+..-   .               
T Consensus       105 --------------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         105 --------------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             --------------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence                          2233455566666543        33446889999999999998741   1               


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 ~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+|..|.+.|.+..|+.-++.+++.
T Consensus       171 m~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         171 MAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            45799999999999999999999997

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.04  E-value=2.5e-05  Score=70.69  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      +..-|+-|.++|+|+|||++|.+.+.+.|-++  .++.+-+..|+++++|..|..-.+.|+.++.               
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---------------  162 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDK---------------  162 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---------------
Confidence            56689999999999999999999999999533  3444568889999999999999999998842               


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                 ....+|...|.+-..+|...||-+-|+.+|++.|++..
T Consensus       163 -----------~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  163 -----------LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             -----------HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence                       02247788999999999999999999999999999875

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=0.0016  Score=61.47  Aligned_cols=178  Identities=15%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             hhhhh-hhhhcCCCCCcH-HH---------HHHHHHHHcCCHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHHCCCh
Q 022442           15 KEDLF-HVIHKVPAGDGP-YV---------RAKHAQLVQKDPEAAIVLFWKAINAGDR----VDSALKDMAVVMKQLDRS   79 (297)
Q Consensus        15 ~~~~~-~~~~~~~~~~~~-~~---------~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~Lg~~l~~~g~~   79 (297)
                      =.+-| +.+.++|+...- ++         .+.+..+...|.+.+.+.|+..|.+-|.    .+..|..-|...+.+.+.
T Consensus       341 Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l  420 (677)
T KOG1915|consen  341 IRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL  420 (677)
T ss_pred             HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc
Confidence            34556 677777764442 11         1122345779999999999999998886    577788889999999999


Q ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442           80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS  159 (297)
Q Consensus        80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~  159 (297)
                      ..|..++-.++..+|.+   .+..-...+=.++++++..-.+|++-|+-.|                          ++-
T Consensus       421 ~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~P--------------------------e~c  471 (677)
T KOG1915|consen  421 TGARKILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSP--------------------------ENC  471 (677)
T ss_pred             HHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh--------------------------Hhh
Confidence            99999999999999984   2332234566788999999999999998754                          455


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK--ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .++...|..=..+|+.+.|-.+|.-|+.... +.+.  |-.....-...|.++.|..+|++.|+.
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            6788889989999999999999999988543 3344  445566667889999999999999986

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.0042  Score=58.81  Aligned_cols=195  Identities=11%  Similarity=0.036  Sum_probs=119.2

Q ss_pred             hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHH---------HHHHHH-HHHHHCCChHHHHHHHHHHHh
Q 022442           22 IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS---------ALKDMA-VVMKQLDRSEEAIEAIKSFRG   91 (297)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~Lg-~~l~~~g~~~eAi~~~~~al~   91 (297)
                      +.+.|-+..+.+-...+--..|+.+.-.+.|++||..-|...+         .|.+-+ ..-+...+.+.+.++|+.+++
T Consensus       315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3444444444444444444556666666666666665444221         111111 111344566666666666666


Q ss_pred             hCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           92 LCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        92 ~~P~--~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      +-|-  ..-..+..+.+.--.++.+...|-.++-.||...|....|                           -..-.+=
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF---------------------------k~YIelE  447 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF---------------------------KGYIELE  447 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH---------------------------HHHHHHH
Confidence            6663  1112233334445556666666666666666665532221                           1112233


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------chhhHHHHH
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE------------DGRTRKRAE  236 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~------------~~~~~~~a~  236 (297)
                      .++++++.--.+|++-|+.+|.+-. |...|.+-..+|+.+.|..+|+-+++.+..+.+            ...+++++.
T Consensus       448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR  527 (677)
T KOG1915|consen  448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR  527 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence            5678899999999999999999997 999999999999999999999999986433322            245566777


Q ss_pred             HHHHHHH
Q 022442          237 ELLLELE  243 (297)
Q Consensus       237 ~~l~~~~  243 (297)
                      .+.+.+.
T Consensus       528 ~LYerlL  534 (677)
T KOG1915|consen  528 ALYERLL  534 (677)
T ss_pred             HHHHHHH
Confidence            7766553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.93  E-value=0.00062  Score=54.81  Aligned_cols=61  Identities=26%  Similarity=0.200  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      .++..++..+...|++++|+..+++++.++|-+.. +..|-.+|..+|+..+|+.+|++...
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999998 88999999999999999999998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.92  E-value=4.9e-05  Score=63.10  Aligned_cols=89  Identities=15%  Similarity=0.057  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      ++.|.+-++.....+|.+++++++=|.+|..+.+          +++|+.-|+.++.++|+..  ....++|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence            5778888888889999999999998888876643          4667778888999999842  233446666666543


Q ss_pred             -----------HHHHHHHHHHHHHhhchhhhh
Q 022442          115 -----------VEEQIEMLKRKLRLIYQGEAF  135 (297)
Q Consensus       115 -----------~~eAi~~~~~al~~~p~~~~~  135 (297)
                                 |++|..+|++|+...|.+..|
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y  116 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELY  116 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence                       667777777777776654443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.92  E-value=1.9e-05  Score=47.11  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      .+++.+|.+|.++|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999964

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.90  E-value=0.0049  Score=57.05  Aligned_cols=180  Identities=14%  Similarity=0.032  Sum_probs=134.2

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH-------------------------------
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-------------------------------   88 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~-------------------------------   88 (297)
                      ...|+.+.|..+-+++....|..+.++...-...+..|+++.|+.+.+.                               
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            4679999999999999999999999988888888899999999987651                               


Q ss_pred             ----------HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh---hc-CcchhHHhhhhh--hHHH
Q 022442           89 ----------FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA---FN-GKPTKTARSHGK--KFQV  152 (297)
Q Consensus        89 ----------al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~---~~-~~~~~~~~~~~~--~~~~  152 (297)
                                +.++.|+...  ...+-+.+|++.|+..++-.+++.+.+..|....   |. .+........-+  ....
T Consensus       245 p~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~  322 (531)
T COG3898         245 PASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE  322 (531)
T ss_pred             hHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                      2233343211  1223467788999999999999999998875322   21 111111111111  1224


Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK-RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~-~g~~~eA~~~~~~al~~  221 (297)
                      +++|++.......+..-..-|+|..|-.--+.+....|.-..+.-|+.+-.. .|+-.+....+-+++..
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            8899999999999999999999999999999999999988877677776654 49999999999999876

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.90  E-value=0.002  Score=62.86  Aligned_cols=176  Identities=11%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-cCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHH
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLI  106 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~  106 (297)
                      .+.+.+.+|+..+-+.-|..|++ .+|..     ...|..+|..|-..|+.+.|..+|+++.+.+=.  +....++...|
T Consensus       353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa  432 (835)
T KOG2047|consen  353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA  432 (835)
T ss_pred             HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence            45677788999999999999887 66653     356888999999999999999999999987533  11223444456


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhh---hhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGE---AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ..=.+..+++.|..+.++|+.. |...   .|.+....+.+-|          ....+|..++......|=++.-...|.
T Consensus       433 emElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlh----------rSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  433 EMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLH----------RSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHH----------HhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            6667888999999999999886 5432   2222211111111          123456666666666677777777777


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++++.--.|. ..|.|..+....-++++..+|++-+..
T Consensus       502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence            77777666666 667777777777777777777766654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0012  Score=58.20  Aligned_cols=137  Identities=18%  Similarity=0.230  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      ...+-+..+++..|.|.=.+.++.+++..+|.. ...+...||.+-.+.|+.+.|...++++-+-..   ..++      
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---kL~~------  247 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---KLDG------  247 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---hhhc------
Confidence            356668889999999999999999999999752 224666689999999999999999987554311   0000      


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                       -.          ..--++.|.+.+|.-..+|.+|...|.+++..||.++. ..|-+.|++=.|+..+|+..++.++..
T Consensus       248 -~q----------~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  248 -LQ----------GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             -cc----------hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             00          11237889999999999999999999999999999998 788999999999999999999999987

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.88  E-value=0.014  Score=59.05  Aligned_cols=242  Identities=14%  Similarity=0.064  Sum_probs=134.5

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      .++++.|+...+-+--+....+.|+.++|..+++..-...+++...+..+-.+|..+|++++|...|+++...+|+  . 
T Consensus        34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~--e-  110 (932)
T KOG2053|consen   34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS--E-  110 (932)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc--H-
Confidence            5677777776666555666777788888887776555566667777777888888888888888888888888886  1 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-C------------c--chhHH-hhhhhhHHHhcCCC-----c
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-G------------K--PTKTA-RSHGKKFQVSVRQE-----T  158 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~------------~--~~~~~-~~~~~~~~~~l~p~-----~  158 (297)
                      .+...+-..|.+-+.|.+-.++--+.-+..|....+- .            .  ..... .-..+.++..++..     .
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~  190 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE  190 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence            2333345566777776665444333333334322110 0            0  00000 00001111111111     1


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCCcH-HHhHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHH
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDAN-KACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRA  235 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al-~~~P~~~-~~~nL-g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a  235 (297)
                      +++... =.++..+|+++||...+..-+ +..+.-+ ...++ ...+...+++.+-.++..+++..   ++++.+.+  .
T Consensus       191 aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~~--~  264 (932)
T KOG2053|consen  191 AEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKIY--T  264 (932)
T ss_pred             HHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHHH--H
Confidence            122221 246778899999999994433 3444433 34444 55777888999999988888886   45543311  1


Q ss_pred             HHHHHHHHhcC-CCCchhhhhcccchhHHHHHHHHHH
Q 022442          236 EELLLELESKQ-PPPDLSDLLGLNLEDEFVNGLEEMV  271 (297)
Q Consensus       236 ~~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~l  271 (297)
                      ....+-++... +|+......... .|++++-.+..+
T Consensus       265 ~sv~klLe~~~~~~a~~~~s~~~~-l~~~~ek~~~~i  300 (932)
T KOG2053|consen  265 DSVFKLLELLNKEPAEAAHSLSKS-LDECIEKAQKNI  300 (932)
T ss_pred             HHHHHHHHhcccccchhhhhhhhh-HHHHHHHHHHhh
Confidence            22444444442 233333333322 355555555444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.87  E-value=0.00065  Score=62.16  Aligned_cols=185  Identities=18%  Similarity=0.129  Sum_probs=128.8

Q ss_pred             hhhhhhhhhcCCCCCc---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHHCCChHH
Q 022442           15 KEDLFHVIHKVPAGDG---PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR----------VDSALKDMAVVMKQLDRSEE   81 (297)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~Lg~~l~~~g~~~e   81 (297)
                      =+.++++.+...+.-.   .++.++-++-.-+|+++|+-+..+|..+-.+          ..-+++.|++.+..+|+.-.
T Consensus       145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd  224 (518)
T KOG1941|consen  145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD  224 (518)
T ss_pred             HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc
Confidence            3556666666632222   4777777777788999999999998875322          23467889999999999999


Q ss_pred             HHHHHHHHHhhCC---cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC
Q 022442           82 AIEAIKSFRGLCS---KQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE  157 (297)
Q Consensus        82 Ai~~~~~al~~~P---~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~  157 (297)
                      |.+.++++.++.-   +. .+..-...+|++|+..|+.+.|..-|++|....-              ..++...      
T Consensus       225 A~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~--------------~~gdrmg------  284 (518)
T KOG1941|consen  225 AMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA--------------SLGDRMG------  284 (518)
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh--------------hhhhhHH------
Confidence            9999998765532   11 1222235579999999999999999999988631              1122111      


Q ss_pred             cHHHHHHHHHHHHHCCChHH-----HHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          158 TSRLLGNLAWAYMQKTNFMA-----AEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~e-----A~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      ...++...+.++....-..+     |++.-++++++...-.      . +..|+.+|..+|.-++=...+.++-
T Consensus       285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            12366777777777666666     8888888888765432      2 4678999999987777666665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=4.6e-05  Score=65.81  Aligned_cols=88  Identities=20%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ....++++.|+.+|.+||..+|..+..+.+-+.++.++.+++.+..-.++++++.|+.  .-.++.||....+...|++|
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHH
Confidence            4456789999999999999999999999999999999999999999999999999983  34566789999999999999


Q ss_pred             HHHHHHHHHh
Q 022442          119 IEMLKRKLRL  128 (297)
Q Consensus       119 i~~~~~al~~  128 (297)
                      |.++.++..+
T Consensus        98 I~~Lqra~sl  107 (284)
T KOG4642|consen   98 IKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHH
Confidence            9999999776

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0025  Score=55.50  Aligned_cols=189  Identities=17%  Similarity=0.194  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CcchHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQSQE   99 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~~~~   99 (297)
                      .|.++...+-..+++++|..++.+|++...++.      .++...|.+...+..+.|++..|+++..+.     |+-+..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            477777788889999999999999997544432      345567888899999999999999987653     221211


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .+.. .+.+ .+.-++++|+++|++++.+...+.          +.+.          -.+.+...+.+|....+|+||-
T Consensus       113 aleK-Aak~-lenv~Pd~AlqlYqralavve~~d----------r~~m----------a~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  113 ALEK-AAKA-LENVKPDDALQLYQRALAVVEEDD----------RDQM----------AFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             HHHH-HHHH-hhcCCHHHHHHHHHHHHHHHhccc----------hHHH----------HHHHHHHhhhHhhhhHHhhHHH
Confidence            2222 2333 577899999999999998743110          0000          1235677899999999999999


Q ss_pred             HHHHHHHHh----C--CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442          180 VVYQKAQMI----D--PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  243 (297)
Q Consensus       180 ~~y~~Al~~----~--P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~  243 (297)
                      ..+.+-...    +  |+.-. ......+++-..+|..|..+++..-+.+  +......-.....+|..+.
T Consensus       171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip--~f~~sed~r~lenLL~ayd  239 (308)
T KOG1585|consen  171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP--AFLKSEDSRSLENLLTAYD  239 (308)
T ss_pred             HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc--cccChHHHHHHHHHHHHhc
Confidence            888875433    2  22223 4455566677779999999999877652  2222222234555555553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.80  E-value=0.00043  Score=63.32  Aligned_cols=163  Identities=12%  Similarity=0.056  Sum_probs=113.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHHHHHHHHHHcC
Q 022442           43 KDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVLIDLYKKCG  113 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~~L~~ly~~~g  113 (297)
                      -++.+++.+...-+.+....     ..++..+|..+..++.++++++.|+.++.....  |+  ...+...||.++-+..
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            34555555554444432222     245667899999999999999999998876442  21  1123455788889999


Q ss_pred             CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---
Q 022442          114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP---  190 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P---  190 (297)
                      ++++|+-...+|.++...   + + .    .+...++       ..-+++.|+.+|..+|+...|.++.++|.++.-   
T Consensus       177 D~~Kal~f~~kA~~lv~s---~-~-l----~d~~~ky-------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNS---Y-G-L----KDWSLKY-------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             hhhHHhhhhHhHHHHHHh---c-C-c----CchhHHH-------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            999999999998887320   0 0 0    0000001       123788999999999999999999999988642   


Q ss_pred             CcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.+   . ..-+|.+|...|+.+.|..-|+.+...
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            222   3 457899999999999999999988754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.79  E-value=0.00094  Score=53.75  Aligned_cols=91  Identities=23%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC----------------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~----------------------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      +......++.+.++..+++++.+-..                      ...++..++..+...|++++|+..+++++..+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            34445678999999999999985321                      13455668888999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      |.  ++..+..+..+|...|+..+|+..|++....
T Consensus        93 P~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   93 PY--DEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             TT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            97  3567777889999999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.78  E-value=0.0021  Score=55.07  Aligned_cols=166  Identities=12%  Similarity=0.010  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML  122 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~  122 (297)
                      |=..-|.--|.+++.+.|..+++++.||+-+...|+++.|.++|...++++|....  ...+-|..+.--||+.-|.+-+
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y--a~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--AHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--HHhccceeeeecCchHhhHHHH
Confidence            44555666777888999999999999999999999999999999999999997322  2223444556679999998877


Q ss_pred             HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH------------HHHH--HHCCChHHHHHHHHHHHHh
Q 022442          123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL------------AWAY--MQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL------------g~~y--~~~g~~~eA~~~y~~Al~~  188 (297)
                      .+--..+|.+.--.   ..+..     ....++|..  +..||            ||..  .-+|+..+ ...++++...
T Consensus       157 ~~fYQ~D~~DPfR~---LWLYl-----~E~k~dP~~--A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~  225 (297)
T COG4785         157 LAFYQDDPNDPFRS---LWLYL-----NEQKLDPKQ--AKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKAD  225 (297)
T ss_pred             HHHHhcCCCChHHH---HHHHH-----HHhhCCHHH--HHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhh
Confidence            77666554321000   00000     001122211  11111            1111  22344333 3456666665


Q ss_pred             CCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          189 DPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       189 ~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .-++..        ..-||..+...|+.++|...|+-++..
T Consensus       226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            555542        345889999999999999999999985

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.003  Score=54.65  Aligned_cols=144  Identities=19%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL----CSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~----~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      +.+++|.++|.+|              |++|.....+..|-.+|.++...    +..+...+-+...+.+ .+.++..+|
T Consensus        28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eA   92 (288)
T KOG1586|consen   28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEA   92 (288)
T ss_pred             cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHH
Confidence            4788888888775              44555556666666666665433    2221111222223344 456699999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCcH----
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-TNFMAAEVVYQKAQMIDPDAN----  193 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-g~~~eA~~~y~~Al~~~P~~~----  193 (297)
                      +.++++++++...          .    | .|.+     -+.-+..+|.+|..- .+++.|+.+|++|-+......    
T Consensus        93 v~cL~~aieIyt~----------~----G-rf~~-----aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   93 VNCLEKAIEIYTD----------M----G-RFTM-----AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHHh----------h----h-HHHH-----HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            9999999998421          0    1 1110     123567899999654 999999999999998654332    


Q ss_pred             --H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          194 --K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       194 --~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                        . .+..+..-...|+|++|+.+|+++...
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1 344566677889999999999998865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.00067  Score=61.91  Aligned_cols=137  Identities=21%  Similarity=0.119  Sum_probs=102.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH--------------HhhCCcchH---
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF--------------RGLCSKQSQ---   98 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a--------------l~~~P~~~~---   98 (297)
                      ++.+..-||+++|+..|.-+.+.+.-..+.+.+|+.++.-+|.|.||..+-.++              .+++...-.   
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f  143 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF  143 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence            566778899999999999888877777889999999999999999998765432              223321100   


Q ss_pred             -HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH
Q 022442           99 -ESL------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ  171 (297)
Q Consensus        99 -~~l------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~  171 (297)
                       .++      ...|+.+....-.|.|||++|+++|.-+|                          +.-.+-.+++.||..
T Consensus       144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~--------------------------ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP--------------------------EYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh--------------------------hhhhhHHHHHHHHHh
Confidence             111      12355666666789999999999887654                          122244679999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442          172 KTNFMAAEVVYQKAQMIDPDANKACNL  198 (297)
Q Consensus       172 ~g~~~eA~~~y~~Al~~~P~~~~~~nL  198 (297)
                      +.=|+-+.+.+.--|..-||.+...||
T Consensus       198 lDYydvsqevl~vYL~q~pdStiA~NL  224 (557)
T KOG3785|consen  198 LDYYDVSQEVLKVYLRQFPDSTIAKNL  224 (557)
T ss_pred             cchhhhHHHHHHHHHHhCCCcHHHHHH
Confidence            999999999999999999999875444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.011  Score=51.20  Aligned_cols=190  Identities=21%  Similarity=0.229  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH----HHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ----ESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~----~~l  101 (297)
                      |.+++..+-..+.+..|=..|.++...    +..  .+..+...+.+|.+ ++..+|+..+++++.+.-+...    ...
T Consensus        37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~  115 (288)
T KOG1586|consen   37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH  115 (288)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence            666777777788888887777777652    322  33456666666655 4999999999999988664111    122


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          102 DNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       102 ~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      +..+|.+|... .+++.||.+|+++-+........        .+            --..+.-.+..-.++++|.+|+.
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~--------ss------------ANKC~lKvA~yaa~leqY~~Ai~  175 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV--------SS------------ANKCLLKVAQYAAQLEQYSKAID  175 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh--------hh------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888776 89999999999988763211000        00            00134445666678899999999


Q ss_pred             HHHHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH
Q 022442          181 VYQKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELE  243 (297)
Q Consensus       181 ~y~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~  243 (297)
                      .|+++....-+|+-        ++.-|.|++..++.-.+...+++-.+.. |...+..+..-...++.++.
T Consensus       176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d-P~F~dsREckflk~L~~aie  245 (288)
T KOG1586|consen  176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD-PAFTDSRECKFLKDLLDAIE  245 (288)
T ss_pred             HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC-CcccccHHHHHHHHHHHHHh
Confidence            99999987777652        2456888888888888888888877762 22234454445555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.72  E-value=9e-05  Score=47.19  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      +++..+|.+|..+|++++|++.|+++++.+|++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777777764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=9.9e-05  Score=43.98  Aligned_cols=33  Identities=24%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      +.+|+++|.++..+|++++|+..|+++++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            356778888888888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=0.0028  Score=53.36  Aligned_cols=116  Identities=20%  Similarity=0.130  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhCCcchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442           81 EAIEAIKSFRGLCSKQSQESL-DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS  159 (297)
Q Consensus        81 eAi~~~~~al~~~P~~~~~~l-~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~  159 (297)
                      +.+...+++...+|......+ ...++..+...|++++|+..++.++.. +.++.               +       .+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~---------------l-------k~  126 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDEN---------------L-------KA  126 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHH---------------H-------HH
Confidence            667777888888876333223 245788899999999999999999975 21110               0       01


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      -+-..|+.+..++|.+++|+..+....  +++...  ..-.|.+|...|+.++|...|++++..
T Consensus       127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            245679999999999999999876542  233333  334699999999999999999999986

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=0.00011  Score=43.59  Aligned_cols=33  Identities=27%  Similarity=0.159  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      +.+++.+|.++..+|++++|+..|++++.++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            356778888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0011  Score=57.73  Aligned_cols=107  Identities=13%  Similarity=0.052  Sum_probs=81.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      |+-+.++|+|+||+..|+.|+..-..- .        .+..+..-. ++++.-....+.|...|+...|+|-+++++...
T Consensus       185 GN~lfk~~~ykEA~~~YreAi~~l~~L-~--------lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAIICLRNL-Q--------LKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHHH-H--------hccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            566689999999999999999863100 0        000000000 111122334688999999999999999999999


Q ss_pred             HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|..+|+|.. ++..|.+....=+.+||..-+.++|+.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            9999999998 888999998889999999999999997

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0014  Score=58.69  Aligned_cols=137  Identities=12%  Similarity=-0.048  Sum_probs=101.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH----------------H
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS----------------F   89 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~----------------a   89 (297)
                      |-+..++--+++++....++..|..+|++.-.+.|........-+..+.+.+++.+|+.....                +
T Consensus        41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA  120 (459)
T KOG4340|consen   41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA  120 (459)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            334455666788888999999999999999999999888777788888888888888865432                1


Q ss_pred             H--------------hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcC
Q 022442           90 R--------------GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR  155 (297)
Q Consensus        90 l--------------~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~  155 (297)
                      +              ..-|........+..|-+..+.|++++|++-|+.+++..-                         
T Consensus       121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-------------------------  175 (459)
T KOG4340|consen  121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-------------------------  175 (459)
T ss_pred             HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC-------------------------
Confidence            1              1123111112334467777888999999998888888631                         


Q ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                       -.+-+-+|++.++.+.|+++.|+++-.+.++.
T Consensus       176 -yqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  176 -YQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             -CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence             12335689999999999999999998887764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0037  Score=55.85  Aligned_cols=150  Identities=21%  Similarity=0.125  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      -..-+.-....|++.+|...|..++...|...  .+...++.+|...|+.++|..++..    .|....       ..+.
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~-------~~~~  203 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAA----LPLQAQ-------DKAA  203 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHh----Ccccch-------hhHH
Confidence            34455556666666666666666666666532  2333356666666666666665544    121000       0000


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP  224 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~  224 (297)
                      +              .+..--..+.+.....+. ..+++.+..+|++.. .+.|+..|...|+.++|.+.+-.++... +
T Consensus       204 ~--------------~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-~  267 (304)
T COG3118         204 H--------------GLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-R  267 (304)
T ss_pred             H--------------HHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c
Confidence            0              000000112222222222 224445566777666 6677777777777777777766666541 1


Q ss_pred             CCcchhhHHHHHHHHHHHHh
Q 022442          225 GCEDGRTRKRAEELLLELES  244 (297)
Q Consensus       225 ~~~~~~~~~~a~~~l~~~~~  244 (297)
                      +..+.....+..++|..++.
T Consensus       268 ~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         268 GFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             cccCcHHHHHHHHHHHhcCC
Confidence            12222223345555555543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.58  E-value=0.0017  Score=65.28  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=78.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      .+..+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++ ...+ -.+-.+|+.+|++++|
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHH
Confidence            4677899999999999999999999999999999999999999998887766666653 2333 4478899999999999


Q ss_pred             HHHHHHHHHhhc
Q 022442          119 IEMLKRKLRLIY  130 (297)
Q Consensus       119 i~~~~~al~~~p  130 (297)
                      ..+|++++...|
T Consensus        97 ~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   97 VHLYERANQKYP  108 (932)
T ss_pred             HHHHHHHHhhCC
Confidence            999999999876

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.0027  Score=57.67  Aligned_cols=60  Identities=8%  Similarity=-0.050  Sum_probs=32.5

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      +.-+.++-..|++-+|....++.++-.|.+-  -....--++++..|+.+.-...+++.+-.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~  166 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPK  166 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence            3344555566666666666666666666531  11111234555666666666666665543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.54  E-value=0.0078  Score=63.31  Aligned_cols=154  Identities=15%  Similarity=0.130  Sum_probs=128.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM  121 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~  121 (297)
                      -|.-+.-.+.|++|.+.... --.+..|.-+|...+++++|.++++..++..-+  ....+...++.+.++++-++|-.+
T Consensus      1510 yG~eesl~kVFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred             hCcHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHH
Confidence            36667778888888885432 235778999999999999999999999988764  234555578888999999999999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  200 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~  200 (297)
                      +.+||+-.|.                        .++.....--+..-++.|+.+.+..+|+-.|.-+|.-.+ |.-...
T Consensus      1587 L~rAL~~lPk------------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1587 LKRALKSLPK------------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             HHHHHhhcch------------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            9999998662                        123445667788889999999999999999999999999 998888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Q 022442          201 CLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       201 ~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .-++.|+.+-+..+|++++...
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcC
Confidence            8899999999999999999974

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.54  E-value=0.0022  Score=61.04  Aligned_cols=135  Identities=16%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcC
Q 022442           76 LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR  155 (297)
Q Consensus        76 ~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~  155 (297)
                      ..+...-|++-+++++++|+-+  ..+.+|+  -....-..||+.+|+++++.....   .++. .....++........
T Consensus       181 ERnp~aRIkaA~eALei~pdCA--dAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~~---lg~s-~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCA--DAYILLA--EEEASTIVEAEELLRQAVKAGEAS---LGKS-QFLQHHGHFWEAWHR  252 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhh--HHHhhcc--cccccCHHHHHHHHHHHHHHHHHh---hchh-hhhhcccchhhhhhc
Confidence            3566677777788888888622  3333343  113445788888888888864210   0000 000001110000000


Q ss_pred             CC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          156 QE---TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       156 p~---~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      .+   ...+...||.|..++|+.+||++.|+..++..|..  .. ..||..+|+.+++|.++..++.+-
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            01   12356789999999999999999999999988853  34 789999999999999999888774

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.52  E-value=0.00016  Score=43.95  Aligned_cols=28  Identities=29%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ++.+||.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999996654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.003  Score=55.61  Aligned_cols=157  Identities=13%  Similarity=0.042  Sum_probs=117.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC----cchHHHHHHHHHHHHHHcC
Q 022442           39 QLVQKDPEAAIVLFWKAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS----KQSQESLDNVLIDLYKKCG  113 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P----~~~~~~l~~~L~~ly~~~g  113 (297)
                      .+--|.+.-....+.+.++.+ |..+.....||.+-.|.|+.+.|...++++-+.+.    -.....++.+.+.+|.-++
T Consensus       187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n  266 (366)
T KOG2796|consen  187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN  266 (366)
T ss_pred             HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence            445577888899999999977 66777788899999999999999999996544332    1223355666778899999


Q ss_pred             CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                      ++.+|...|.+.+..+|                          .++.+.+|-+.|++-+|+..+|++..+.++.+.|...
T Consensus       267 n~a~a~r~~~~i~~~D~--------------------------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDP--------------------------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             chHHHHHHHhhccccCC--------------------------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999887643                          3555778899999999999999999999999999765


Q ss_pred             ---H-HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442          194 ---K-ACNLGLCLIK-RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       194 ---~-~~nLg~~l~~-~g~~~eA~~~~~~al~~  221 (297)
                         . ..||...|.- --+..+-...+..++..
T Consensus       321 l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~  353 (366)
T KOG2796|consen  321 LHESVLFNLTTMYELEYSRSMQKKQALLEAVAG  353 (366)
T ss_pred             hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhc
Confidence               2 4566554421 12333334455566654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.012  Score=52.74  Aligned_cols=152  Identities=14%  Similarity=0.005  Sum_probs=109.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHHHHHHHHHcCCHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~L~~ly~~~g~~~e  117 (297)
                      ....|++.+|...+..++...|.+.++...|+.+|...|+.++|..++..    .|.+... .+..           ...
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~-----------l~a  208 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHG-----------LQA  208 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHH-----------HHH
Confidence            34689999999999999999999999999999999999999999987654    3432111 1111           222


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH--H-
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--K-  194 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~--~-  194 (297)
                      .++.+.++-.. |+...+             .-.+.-+|++..+-+.|+..|...|++++|++.+-..+..+-+..  . 
T Consensus       209 ~i~ll~qaa~~-~~~~~l-------------~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~  274 (304)
T COG3118         209 QIELLEQAAAT-PEIQDL-------------QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA  274 (304)
T ss_pred             HHHHHHHHhcC-CCHHHH-------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence            35555554443 210000             011355799999999999999999999999999999998876544  2 


Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          195 ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       195 ~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      .-.|-.++...|..+.+...|++=+
T Consensus       275 Rk~lle~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         275 RKTLLELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5567777777776666666666544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.00076  Score=63.80  Aligned_cols=157  Identities=18%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH-HhhCCcc------hHHHHHHHHHHHHHHc
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF-RGLCSKQ------SQESLDNVLIDLYKKC  112 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a-l~~~P~~------~~~~l~~~L~~ly~~~  112 (297)
                      +....+..+..-..-+.....+.+.++..-+..+...|++..|.+.+-.. +.-.|..      ..-..+|+||-++.+.
T Consensus       217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~  296 (696)
T KOG2471|consen  217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL  296 (696)
T ss_pred             HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence            34445555555555566666778888888999999999999999987542 2333320      1112346789999999


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcC-cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNG-KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      |.|.-++-+|.+||+-.-.. .-+| ...       ..+.+. .-..-.+++|.|..|...||+-+|.+||.+++...-.
T Consensus       297 ~~y~~~~~~F~kAL~N~c~q-L~~g~~~~-------~~~tls-~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~  367 (696)
T KOG2471|consen  297 GCYQASSVLFLKALRNSCSQ-LRNGLKPA-------KTFTLS-QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR  367 (696)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HhccCCCC-------cceehh-cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence            99999999999999721100 0001 000       000000 0112358999999999999999999999999999999


Q ss_pred             cHH-HhHHHHHHHHc
Q 022442          192 ANK-ACNLGLCLIKR  205 (297)
Q Consensus       192 ~~~-~~nLg~~l~~~  205 (297)
                      +|. |..|+.|.+..
T Consensus       368 nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  368 NPRLWLRLAECCIMA  382 (696)
T ss_pred             CcHHHHHHHHHHHHH
Confidence            998 99999988654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.0093  Score=50.27  Aligned_cols=120  Identities=13%  Similarity=0.048  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHcCCChHHH---HHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442           47 AAIVLFWKAINAGDRVDSA---LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEML  122 (297)
Q Consensus        47 ~A~~~~~~al~~~p~~~~a---~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~  122 (297)
                      +.+...++-+..+|....+   ...++..+...|++++|+..++.++..-.++. ...+...|+.+..++|.+|+|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3344444444445444332   34578889999999999999999886644321 1123345789999999999999876


Q ss_pred             HHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      .....-                            .+.. .-...|.++..+|+-++|...|.+|+..+++.+.
T Consensus       150 ~t~~~~----------------------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         150 DTIKEE----------------------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hccccc----------------------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            552221                            1111 2345799999999999999999999999877663

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.0069  Score=55.13  Aligned_cols=55  Identities=16%  Similarity=0.055  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442          162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  216 (297)
Q Consensus       162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~  216 (297)
                      +..++..+.+.|-|++|++.-+++++++|.+.- ...++.++...|++.|+.+.+.
T Consensus       178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  178 HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            334444455555555555555555555554443 3344444444444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.42  E-value=0.0038  Score=60.39  Aligned_cols=124  Identities=17%  Similarity=-0.053  Sum_probs=98.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHHHcCCHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ..+.+.|.+++....+..|+..--++.-|.++...|+.++|++.|++++.....  ........-++..+.-+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            567888999999999999999888899999999999999999999998854432  112223345788899999999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh-------HHHHHHHHHHHHhCC
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-------MAAEVVYQKAQMIDP  190 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~-------~eA~~~y~~Al~~~P  190 (297)
                      ..+.+.++.+.-.                         .+-..+..|.|+...|+.       ++|..+|+++-.+-.
T Consensus       326 ~~f~~L~~~s~WS-------------------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  326 EYFLRLLKESKWS-------------------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHhccccH-------------------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            9999988864200                         112456689999999999       999999998876644

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.40  E-value=0.00027  Score=41.50  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      +++++|.+|..+|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999974

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.35  E-value=0.039  Score=54.16  Aligned_cols=165  Identities=18%  Similarity=0.157  Sum_probs=119.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-CC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----------chH
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAG-DR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----------QSQ   98 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----------~~~   98 (297)
                      ...+.++...|+++.|...++++++.+ +.   .+..|-+-|..-....+++.|..+.+++...--.          ..+
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ  470 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ  470 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence            334567778999999999999999854 33   3677888888888999999999999988754211          112


Q ss_pred             HHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           99 ESL------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        99 ~~l------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      ..+      +..++++-...|-++.-..+|++.+.+.-                          -.|.+..|.|..+.+.
T Consensus       471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------------------------aTPqii~NyAmfLEeh  524 (835)
T KOG2047|consen  471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------------------------ATPQIIINYAMFLEEH  524 (835)
T ss_pred             HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------------------------CCHHHHHHHHHHHHhh
Confidence            222      34457777888888888899999888731                          1455778888888888


Q ss_pred             CChHHHHHHHHHHHHhCC--CcHH-HhH-HHHHHHHcC--CHHHHHHHHHHHHhcCC
Q 022442          173 TNFMAAEVVYQKAQMIDP--DANK-ACN-LGLCLIKRT--RYNEARSVLEDVLYGRI  223 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P--~~~~-~~n-Lg~~l~~~g--~~~eA~~~~~~al~~~~  223 (297)
                      .-+++|.+.|++.+.+-|  .--+ |.. |-.+..+-|  ..+.|..+|+++|...|
T Consensus       525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            889999999999888764  2224 543 222222333  77888899999988633

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.27  E-value=0.0026  Score=47.18  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      .+..+++++..+|++.++.+.+|..+...|++++|++.+-.++..+|+.........+..++...|.-+.-..-|++-|
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL   85 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL   85 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            4677889999999999999999999999999999999999999998863222344445667777787666666666644

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.27  E-value=0.022  Score=51.24  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=95.1

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC---
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---  113 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g---  113 (297)
                      ...+...|+.+|+++.  ...++.+.++||.+|..    ..+..+|...|+++...+-..+ ......++..|..-+   
T Consensus        89 v~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~  165 (292)
T COG0790          89 VSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQAL  165 (292)
T ss_pred             ccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhh
Confidence            3455777787777443  35566677778877766    3377778888877776644321 112334555544331   


Q ss_pred             ----CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q 022442          114 ----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKA  185 (297)
Q Consensus       114 ----~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~A  185 (297)
                          ....|+..|.++-..                            .++.+..+||.+|..    ..++.+|...|++|
T Consensus       166 ~~~~~~~~A~~~~~~aa~~----------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A  217 (292)
T COG0790         166 AVAYDDKKALYLYRKAAEL----------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA  217 (292)
T ss_pred             cccHHHHhHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence                122455555554443                            255688999999865    34899999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcC---------------CHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRT---------------RYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g---------------~~~eA~~~~~~al~~  221 (297)
                      -+...  .. .++++ ++...|               +...|...+..+...
T Consensus       218 a~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         218 AEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             HHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            99877  55 78888 777666               666677777666654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.25  E-value=0.0076  Score=46.78  Aligned_cols=95  Identities=18%  Similarity=0.106  Sum_probs=69.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhh---chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          109 YKKCGKVEEQIEMLKRKLRLI---YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      ..+.|-|++|...++++++..   |+..+|.         |.. |       ++-.+..|+.++..+|+|++++..-.++
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD---------h~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~a   81 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFD---------HDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRA   81 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS------------HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcc---------ccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            346689999999999999984   5554443         000 1       2336788999999999999999888888


Q ss_pred             HH-------hCCCcHH-H----hHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          186 QM-------IDPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       186 l~-------~~P~~~~-~----~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      |.       ++.|... |    ++.+..+...|+.++|+..|+.+-+
T Consensus        82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            84       5677665 5    4689999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.24  E-value=0.02  Score=53.42  Aligned_cols=134  Identities=18%  Similarity=0.091  Sum_probs=90.3

Q ss_pred             cCCHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           42 QKDPEAAIVLFWKA-INAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        42 ~g~~~~A~~~~~~a-l~~~p~~~~a~~~Lg~~l~~~---------g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      .||.++|+..+..+ ....+.+++.+-.+|.+|...         ...++||..|+++..+.|+.   ..+.+++.++..
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~---Y~GIN~AtLL~~  271 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY---YSGINAATLLML  271 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc---cchHHHHHHHHH
Confidence            79999999999984 456778889888899887653         35789999999999999862   345556777788


Q ss_pred             cCCHHHHHHHHHHHH-HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          112 CGKVEEQIEMLKRKL-RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       112 ~g~~~eAi~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      .|...+...-+++.. +++.    +          .+++-. .-+-.+-+.+..++.+..-.|++++|++++++++.+.|
T Consensus       272 ~g~~~~~~~el~~i~~~l~~----l----------lg~kg~-~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSS----L----------LGRKGS-LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             cCCcccchHHHHHHHHHHHH----H----------HHhhcc-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            887555554444433 2210    0          000000 00012345667788888888899999999999888866


Q ss_pred             CcH
Q 022442          191 DAN  193 (297)
Q Consensus       191 ~~~  193 (297)
                      ..-
T Consensus       337 ~~W  339 (374)
T PF13281_consen  337 PAW  339 (374)
T ss_pred             cch
Confidence            544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.015  Score=50.85  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcc---hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~---~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      +..-++.+....++++|-..+.++.+-.-++   ++ .-.+--.+.+......+.|+.++|++|..+.-           
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~-----------  102 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV-----------  102 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------
Confidence            4445788888999999999999888543321   01 11122345677888999999999999998731           


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSV  214 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~  214 (297)
                         .+|       .|+.+..-..-+.=..+.-++++|+.+|++++.+--...      + +-..+++|.+..++.||...
T Consensus       103 ---E~G-------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  103 ---ECG-------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             ---HhC-------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence               111       122222222233334566789999999999998643222      2 34678999999999999888


Q ss_pred             HHHHH
Q 022442          215 LEDVL  219 (297)
Q Consensus       215 ~~~al  219 (297)
                      +.+-.
T Consensus       173 ~lKe~  177 (308)
T KOG1585|consen  173 FLKEG  177 (308)
T ss_pred             HHHhh
Confidence            86533

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.20  E-value=0.1  Score=48.74  Aligned_cols=159  Identities=13%  Similarity=0.036  Sum_probs=102.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHH---CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~l~~---~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ...+-.-+|++.-+.+.+..-.+    -++.+...+..|.++.+   .|+.++|+..+..++........ ....++|.+
T Consensus       148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~-d~~gL~GRI  226 (374)
T PF13281_consen  148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP-DTLGLLGRI  226 (374)
T ss_pred             HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh-HHHHHHHHH
Confidence            33444567888888888765555    34456677788999999   99999999999886554433222 334446766


Q ss_pred             HHHc---------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          109 YKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       109 y~~~---------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      |...         ...++|+..|+++.++.|  ..|                         .-.|++.++.-.|...+..
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--~~Y-------------------------~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEP--DYY-------------------------SGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcCCc--ccc-------------------------chHHHHHHHHHcCCcccch
Confidence            6542         357889999999998864  111                         2245555555555433333


Q ss_pred             HHHHHHH-H----------hCCCcHHH--hHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          180 VVYQKAQ-M----------IDPDANKA--CNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       180 ~~y~~Al-~----------~~P~~~~~--~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .-.++.. .          .++...-|  -.++.+..-.|++++|...+++++...
T Consensus       280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            2222222 1          11221113  357788888999999999999999873

>smart00028 TPR Tetratricopeptide repeats

Probab=97.16  E-value=0.00057  Score=38.61  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      .++.++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            367899999999999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.15  E-value=0.00085  Score=63.34  Aligned_cols=94  Identities=18%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .-.+..+.|+.|+..|-+||++.|                          +.+..+.+.+.++...+.+..|+.-..+|+
T Consensus        12 n~~l~~~~fd~avdlysKaI~ldp--------------------------nca~~~anRa~a~lK~e~~~~Al~Da~kai   65 (476)
T KOG0376|consen   12 NEALKDKVFDVAVDLYSKAIELDP--------------------------NCAIYFANRALAHLKVESFGGALHDALKAI   65 (476)
T ss_pred             hhhcccchHHHHHHHHHHHHhcCC--------------------------cceeeechhhhhheeechhhhHHHHHHhhh
Confidence            334678999999999999999865                          334455677788888999999999999999


Q ss_pred             HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442          187 MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  226 (297)
Q Consensus       187 ~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~  226 (297)
                      +++|.... ++.-|.+....+++.+|...|+.+....|.++
T Consensus        66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~  106 (476)
T KOG0376|consen   66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP  106 (476)
T ss_pred             hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence            99998888 77778888999999999999998888743333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.14  E-value=0.019  Score=51.79  Aligned_cols=134  Identities=10%  Similarity=0.052  Sum_probs=94.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ-LDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~-~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      .......+..+.|...|.+|.+..+-..+.|...|.+-.. .++.+.|..+|+.+++..|.+..  +.....+.+...|+
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~--~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD--FWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHTT-
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhCc
Confidence            3344455668999999999997777778889999999666 55555599999999999997543  33334567789999


Q ss_pred             HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      .+.|-.+|++++...+....                       ...+|......=...|+.+....+++++.+.-|+...
T Consensus        86 ~~~aR~lfer~i~~l~~~~~-----------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   86 INNARALFERAISSLPKEKQ-----------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHHHHHHHHCCTSSCHHH-----------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHHHHHHHHHHhcCchhH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            99999999999987542110                       0124444444446668999999999999999888554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0022  Score=58.07  Aligned_cols=94  Identities=21%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      -|+-|++.++|..|+..|.++|+..-++                       |+ ++..|+|.+.+...+|+|..|+.-..
T Consensus        87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------------------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs  143 (390)
T KOG0551|consen   87 EGNEYFKEKRYKDAVESYTEGLKKKCAD-----------------------PDLNAVLYTNRAAAQLYLGNYRSALNDCS  143 (390)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------------------ccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4677899999999999999999873211                       11 23478899999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+.++|++.. .+.=+.|+..+.++++|..+++..+..
T Consensus       144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999998 888899999999999999998877654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.05  E-value=0.15  Score=47.64  Aligned_cols=99  Identities=13%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442           27 AGDGPYVRAK--HAQLVQKDPEAAIVLFWKAINAGDRVDSA-LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN  103 (297)
Q Consensus        27 ~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~  103 (297)
                      ++..++..+.  +..+.+|+++.|.+-|+.-+. +|..... +.-|-.--..+|..+-|+.+-+.+....|.-.+. +..
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA-~~A  193 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWA-ARA  193 (531)
T ss_pred             ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchH-HHH
Confidence            4444554443  456789999999999976554 4554321 2233344467799999999999999999974332 222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      .| ......|+++.|+++.......
T Consensus       194 tL-e~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         194 TL-EARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HH-HHHHhcCChHHHHHHHHHHHHH
Confidence            23 3447899999999988876654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.98  E-value=0.063  Score=53.09  Aligned_cols=178  Identities=20%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             cccccccchhhhhhhhhcCC--CCCcHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-------cCCChHHHHHHHHHH
Q 022442            7 NKKIFSSKKEDLFHVIHKVP--AGDGPYVRAKHAQL-----VQKDPEAAIVLFWKAIN-------AGDRVDSALKDMAVV   72 (297)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~al~-------~~p~~~~a~~~Lg~~   72 (297)
                      +.+.++.+..++|+.....-  ....+-..++.++.     ..+|++.|+.+|+.+..       ..  .+.+.+.+|.+
T Consensus       220 ~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~  297 (552)
T KOG1550|consen  220 NERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRL  297 (552)
T ss_pred             cccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHH
Confidence            33333334445554443332  23345555666544     45789999999999877       33  45577889999


Q ss_pred             HHHCC-----ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442           73 MKQLD-----RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  144 (297)
Q Consensus        73 l~~~g-----~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g---~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~  144 (297)
                      |.+..     +...|..+|.++......+++    ..||.+|..-.   ++..|...|..|...                
T Consensus       298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~----~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------------  357 (552)
T KOG1550|consen  298 YLQGLGVEKIDYEKALKLYTKAAELGNPDAQ----YLLGVLYETGTKERDYRRAFEYYSLAAKA----------------  357 (552)
T ss_pred             HhcCCCCccccHHHHHHHHHHHHhcCCchHH----HHHHHHHHcCCccccHHHHHHHHHHHHHc----------------
Confidence            98864     677799999998887665333    33566655444   356788888777764                


Q ss_pred             hhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHHHhHHHHHHH-HcCCHHHHHHHHHHHH
Q 022442          145 SHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANKACNLGLCLI-KRTRYNEARSVLEDVL  219 (297)
Q Consensus       145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~-~~g~~~eA~~~~~~al  219 (297)
                                  .+..+..++|.+|..    ..+...|..+|++|.+..+-.. ...++.++. ..+++..+...+....
T Consensus       358 ------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A-~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  358 ------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSA-AYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             ------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhh-HHHHHHHHHHccccccHHHHHHHHHH
Confidence                        245678888888865    3689999999999999983222 233332222 1177766666554433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.01  Score=51.80  Aligned_cols=106  Identities=18%  Similarity=-0.019  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHh--------hCCcc--h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRG--------LCSKQ--S------QESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~--------~~P~~--~------~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      ..+++.-|+-+..+|+|.||+..|+.++.        -.|.+  +      ...+..+...++...|+|=++++.....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            35678889999999999999999998753        23432  1      12334445778888999999999999988


Q ss_pred             HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      ...                          |.+..+++..|.++...-+..+|.+-|.++|+++|.-..
T Consensus       258 ~~~--------------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHH--------------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcC--------------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            874                          356678999999999999999999999999999998764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.92  E-value=0.0017  Score=38.44  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      .+++.+|.++.++|++++|+..|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3456666666666666666666666666655

...

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.91  E-value=0.00095  Score=60.60  Aligned_cols=90  Identities=20%  Similarity=0.138  Sum_probs=75.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ++.+|.++.|++.|..+|.++|..+..+..-+.++..+++...||.=|..++.++|+.+...  -.-+...+.+|++++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y--kfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY--KFRGYAERLLGNWEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc--chhhHHHHHhhchHHH
Confidence            45789999999999999999999999999999999999999999999999999999743322  2235566788999999


Q ss_pred             HHHHHHHHHhhc
Q 022442          119 IEMLKRKLRLIY  130 (297)
Q Consensus       119 i~~~~~al~~~p  130 (297)
                      ...++.+.++..
T Consensus       202 a~dl~~a~kld~  213 (377)
T KOG1308|consen  202 AHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHhccc
Confidence            999999998853

>PRK10941 hypothetical protein; Provisional

Probab=96.90  E-value=0.013  Score=52.49  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ   98 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~   98 (297)
                      ...+|..+..+++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|+.-++..++.+|+++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            5566778889999999999999999999999999999999999999999999999999999998643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.86  E-value=0.0025  Score=39.28  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      .++++||.+|..+|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            47888999999999999999999998875

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.86  E-value=0.0021  Score=38.97  Aligned_cols=24  Identities=33%  Similarity=0.546  Sum_probs=14.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ||.+|.++|++++|+.+|+++|.+
T Consensus         5 Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    5 LGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566666666666666666665544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.84  E-value=0.0016  Score=38.06  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      ++++.+|.++..+|++++|+..|++++...|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            46788888888888888888888888888885

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.066  Score=54.09  Aligned_cols=163  Identities=12%  Similarity=0.059  Sum_probs=91.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ..-|-.++|..+|++--+        +-.|-.+|..+|++++|.++-+.--.+.-.    +-++..+.-+...++.+.|+
T Consensus       811 ieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHH
Confidence            344455555555554322        233455666667777766665443222222    11222344446777777777


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV-RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI----------  188 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l-~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~----------  188 (297)
                      +.|+++=.-  .-+.+     +.....+.....-+ ...++..|.--|.-+...|+.+.|+.+|..|-+.          
T Consensus       879 eyyEK~~~h--afev~-----rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~q  951 (1416)
T KOG3617|consen  879 EYYEKAGVH--AFEVF-----RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQ  951 (1416)
T ss_pred             HHHHhcCCh--HHHHH-----HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeec
Confidence            777774221  00000     00000011000000 1123445566688888899999999999988653          


Q ss_pred             -----------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          189 -----------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       189 -----------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                                 ...+.. -+.||.-|...|++.+|+..|.++-..
T Consensus       952 Gk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  952 GKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             cCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                       122333 578999999999999999999887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.83  E-value=0.047  Score=49.19  Aligned_cols=129  Identities=11%  Similarity=-0.023  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      +|..+.....+.+..+.|..+|.+++...+-..  .++...|.+-.. .++.+-|..+|+++++..|             
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-------------   67 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFP-------------   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-------------
Confidence            455566677777779999999999986544322  345455666455 4555559999999999854             


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                                   .+...+......+...|+.+.|..+|++++..-|...   . |......=.+.|+.+....+.+++.
T Consensus        68 -------------~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   68 -------------SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             -------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                         2445666666788899999999999999999877766   3 6667777788899999999998888


Q ss_pred             hc
Q 022442          220 YG  221 (297)
Q Consensus       220 ~~  221 (297)
                      +.
T Consensus       135 ~~  136 (280)
T PF05843_consen  135 EL  136 (280)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.82  E-value=0.0021  Score=60.79  Aligned_cols=98  Identities=11%  Similarity=-0.061  Sum_probs=63.4

Q ss_pred             HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442           69 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  148 (297)
Q Consensus        69 Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (297)
                      -+.-...-+.++.|+..|.++++++|+.+  .....-+.++.+.+.+..|+.-..+|+++.|                  
T Consensus        10 ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------------------   69 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDP------------------   69 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCc------------------
Confidence            34455556667777777777777777522  1221223455677777777777777777644                  


Q ss_pred             hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       149 ~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                              ....++..-|.+++.++++.+|...|++...+.|+.+.
T Consensus        70 --------~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   70 --------TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             --------hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence                    22345566677777778888888888888888887776

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.81  E-value=0.0041  Score=60.19  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442           69 MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  148 (297)
Q Consensus        69 Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (297)
                      -|.-...+|+...|++++..++-..|......+.+ |+.++..-|-..+|-..+.++|.+..                  
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~------------------  673 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINS------------------  673 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhcc------------------
Confidence            35555788999999999999999999643334444 78888999999999999999998842                  


Q ss_pred             hHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       149 ~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                              .-+-.++.+|.+|..+.+.+.|+++|+.|++++|+++.
T Consensus       674 --------sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  674 --------SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPE  711 (886)
T ss_pred             --------cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence                    12236778999999999999999999999999999996

>PRK10941 hypothetical protein; Provisional

Probab=96.68  E-value=0.025  Score=50.64  Aligned_cols=81  Identities=17%  Similarity=0.087  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEEL  238 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~  238 (297)
                      +.+.||=.+|.+.++++.|+.+.++.+.+.|+++. +-..|.+|.++|.+..|..-++.-++..|.++    ........
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp----~a~~ik~q  257 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP----ISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch----hHHHHHHH
Confidence            46789999999999999999999999999999998 88999999999999999999999998632222    23345555


Q ss_pred             HHHHHh
Q 022442          239 LLELES  244 (297)
Q Consensus       239 l~~~~~  244 (297)
                      +.++..
T Consensus       258 l~~l~~  263 (269)
T PRK10941        258 IHSIEQ  263 (269)
T ss_pred             HHHHhh
Confidence            555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.66  E-value=0.12  Score=40.34  Aligned_cols=101  Identities=15%  Similarity=0.024  Sum_probs=62.7

Q ss_pred             HHHCCChHHHHHHHHHHHhh---CCc-c------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           73 MKQLDRSEEAIEAIKSFRGL---CSK-Q------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        73 l~~~g~~~eAi~~~~~al~~---~P~-~------~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      -.+-|-|++|.+.++++...   -|. .      .+..-+..|+..+..+|+|++++..-.++|....          +.
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN----------RR   88 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN----------RR   88 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH----------HH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh----------hc
Confidence            34457777887777776542   232 1      1122234577888899999999999888887532          00


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ..-+.+.-.+     +..+.++.|.++..+|+.++|+..|+.+-++
T Consensus        89 GEL~qdeGkl-----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKL-----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHH-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchh-----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            0001111111     2246789999999999999999999999764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.54  E-value=0.0026  Score=57.86  Aligned_cols=118  Identities=16%  Similarity=0.044  Sum_probs=70.1

Q ss_pred             HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442           74 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  153 (297)
Q Consensus        74 ~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (297)
                      ...|.+++||+.|..++.++|..+  .++..-+.+++++++...||.-+..+++++|+                      
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~D----------------------  180 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPD----------------------  180 (377)
T ss_pred             hcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcc----------------------
Confidence            345777777777777777777632  34433566777777777777777777776542                      


Q ss_pred             cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                          .+.-+--.|.+...+|+|++|-..++.|.+++=+-..--.|-.+.-..+..++-...+++..
T Consensus       181 ----sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~  242 (377)
T KOG1308|consen  181 ----SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAR  242 (377)
T ss_pred             ----cccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence                22233445666677777777777777777765443322223333333444444444444433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.52  E-value=0.0097  Score=39.49  Aligned_cols=38  Identities=24%  Similarity=0.195  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL  198 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL  198 (297)
                      .++.|+..+..+|+|++|..+...+|+++|+|.....|
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            57889999999999999999999999999999874444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.46  E-value=0.11  Score=45.05  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----  187 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~----  187 (297)
                      ...+++|++.|.-|+-...           ...  .+..      .-+.++..+||+|..+|+.+.....+++|++    
T Consensus        90 ~Rt~~~ai~~YkLAll~~~-----------~~~--~~~s------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~  150 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQ-----------IKK--EKPS------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE  150 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHH-----------HhC--CCHH------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence            4567788888877776421           000  0000      1234678899999999996665555555554    


Q ss_pred             ---hC--CCc----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442          188 ---ID--PDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL  239 (297)
Q Consensus       188 ---~~--P~~----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l  239 (297)
                         ..  |..    .. .+-+|.+..+.|++++|..+|.+++... ..+....-.+.|++..
T Consensus       151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~-~~s~~~~l~~~AR~~w  211 (214)
T PF09986_consen  151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK-KASKEPKLKDMARDQW  211 (214)
T ss_pred             HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHH
Confidence               33  222    23 5678999999999999999999999862 2222233344555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.43  E-value=0.32  Score=44.47  Aligned_cols=147  Identities=15%  Similarity=0.081  Sum_probs=98.4

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh-
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-S-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF-  135 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~-  135 (297)
                      .......+..++.+..+.|+++-|..++.++...++.. . ...+...-+.++-..|+..+|+..++..+......... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence            44566788899999999999999999999998876321 0 11333445677889999999999999998832211100 


Q ss_pred             -cCcchhHH-----h-hhhhhHHHhcCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          136 -NGKPTKTA-----R-SHGKKFQVSVRQETSRLLGNLAWAYMQK------TNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       136 -~~~~~~~~-----~-~~~~~~~~~l~p~~~~~l~nLg~~y~~~------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                       ........     . .........-....+.++..+|.....+      +..++++..|++|+.++|+... |..+|..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence             00000000     0 0000000000011346788899999888      9999999999999999999998 8888887


Q ss_pred             HHHc
Q 022442          202 LIKR  205 (297)
Q Consensus       202 l~~~  205 (297)
                      +...
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.31  E-value=0.035  Score=41.14  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+..++++++.+|++.. .+.||..+...|++++|++.+-.++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            35567777777888777 777888888888888888877777775

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.27  E-value=0.065  Score=43.94  Aligned_cols=87  Identities=15%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      ....+..+..+-.+.++.+++..++..+.-+.|...  .+...-|.++...|++.+|+.+++.+....            
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~------------   74 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEERA------------   74 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhccC------------
Confidence            345566777777788888888888888888888743  455556788888899999998888865542            


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                                    |.++.+-.-++.|+..+|+.+
T Consensus        75 --------------~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   75 --------------PGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --------------CCChHHHHHHHHHHHHcCChH
Confidence                          233445566788887777654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.6  Score=44.77  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=115.7

Q ss_pred             HHHcCCHHHHHHHHHHHHH---cCCC-------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chHHHHHHHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLID  107 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~---~~p~-------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~~~l~~~L~~  107 (297)
                      .+..|++.+|+.......+   ..|.       .+..+..+|.-...-|.+++|...|..+.++-.. +-+.....+|+.
T Consensus       333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi  412 (629)
T KOG2300|consen  333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI  412 (629)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence            4578999999988887766   3454       3456777899999999999999999998876553 334455567899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhh-chh-hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLI-YQG-EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~-p~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      .|.+.|+.+.--    ++++.. |+. ..+.+        +  ..       -..+++--|...+.++++.||....++.
T Consensus       413 ~YL~~~~~ed~y----~~ld~i~p~nt~s~ss--------q--~l-------~a~~~~v~glfaf~qn~lnEaK~~l~e~  471 (629)
T KOG2300|consen  413 SYLRIGDAEDLY----KALDLIGPLNTNSLSS--------Q--RL-------EASILYVYGLFAFKQNDLNEAKRFLRET  471 (629)
T ss_pred             HHHHhccHHHHH----HHHHhcCCCCCCcchH--------H--HH-------HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999988766544    344433 221 00000        0  00       1236777888899999999999999999


Q ss_pred             HHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          186 QMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       186 l~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      |++. +..+        ..-||.+....|+..|+....+-++...
T Consensus       472 Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  472 LKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             Hhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            9987 2221        2347888889999999999999888764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.16  E-value=0.093  Score=43.04  Aligned_cols=82  Identities=10%  Similarity=-0.031  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      ......+.+..++.+.+..++...--+.|+.++.-..-|.+++..|++.+|+.+++.+....|..+.  ..-+++.++..
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~--~kALlA~CL~~   90 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY--AKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHH
Confidence            4445566778899999999998777799999999999999999999999999999998888776332  22335666666


Q ss_pred             cCCH
Q 022442          112 CGKV  115 (297)
Q Consensus       112 ~g~~  115 (297)
                      +|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.12  E-value=0.33  Score=45.39  Aligned_cols=35  Identities=23%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHCCCh---------------HHHHHHHHHHHHhCCCcHH
Q 022442          160 RLLGNLAWAYMQKTNF---------------MAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~---------------~eA~~~y~~Al~~~P~~~~  194 (297)
                      ..-+..+.++..+++-               ++|-..+++|+..-|.-..
T Consensus       179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~  228 (360)
T PF04910_consen  179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV  228 (360)
T ss_pred             cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence            4567788889999888               9999999999998887654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.09  E-value=0.87  Score=40.77  Aligned_cols=148  Identities=15%  Similarity=0.038  Sum_probs=105.7

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----c
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----C  112 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~  112 (297)
                      ..+++..|..++.++-...  .+.+...++.++...    .+..+|+..|+.+....-.    .....||.+|..    .
T Consensus        53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~----~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA----EALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH----HHHHhHHHHHhcCCCcc
Confidence            5678999999999887733  236778888888665    3688899999866554322    233346767666    4


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-------ChHHHHHHHHHH
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-------NFMAAEVVYQKA  185 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-------~~~eA~~~y~~A  185 (297)
                      .+..+|...|+++.+......                         ..+..+||.+|..-.       +...|+..|++|
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEA-------------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhH-------------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            489999999999988731100                         123677777776642       334899999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHc-C---CHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKR-T---RYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~-g---~~~eA~~~~~~al~~  221 (297)
                      -...  ++. ..+||.+|..- |   ++.+|..+|.++.+.
T Consensus       182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            8876  666 78899888553 3   899999999999985

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.07  E-value=0.16  Score=51.39  Aligned_cols=61  Identities=20%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHH----------HHhCCCcH----------H-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKA----------QMIDPDAN----------K-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~A----------l~~~P~~~----------~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      .++++.+.-+...++.+.|+++|+++          |.-+|...          . |-.-|..+...|+.+.|+.+|..+
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            47889999999999999999999985          23344332          2 334688889999999999999987


Q ss_pred             Hh
Q 022442          219 LY  220 (297)
Q Consensus       219 l~  220 (297)
                      -.
T Consensus       939 ~D  940 (1416)
T KOG3617|consen  939 KD  940 (1416)
T ss_pred             hh
Confidence            65

>smart00028 TPR Tetratricopeptide repeats

Probab=95.84  E-value=0.013  Score=32.65  Aligned_cols=31  Identities=23%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      ++..+|.++..+|++++|+..+++++...|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4566677777777777777777766666553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.83  E-value=0.37  Score=47.72  Aligned_cols=141  Identities=16%  Similarity=0.076  Sum_probs=106.1

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----CChHHHHHHHHHHHh-------hC-CcchHHHHHHHHHHHHH
Q 022442           44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRG-------LC-SKQSQESLDNVLIDLYK  110 (297)
Q Consensus        44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-----g~~~eAi~~~~~al~-------~~-P~~~~~~l~~~L~~ly~  110 (297)
                      +...|..+|+.+...  .+..+...+|.++..-     .+.+.|+..++.+..       .. |.     ..+-+|.+|.
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~-----a~~~lg~~Y~  299 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP-----AQYGLGRLYL  299 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc-----cccHHHHHHh
Confidence            356799999988775  4556778888888665     589999999988766       22 21     2233677777


Q ss_pred             HcC-----CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC---ChHHHHHHH
Q 022442          111 KCG-----KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT---NFMAAEVVY  182 (297)
Q Consensus       111 ~~g-----~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g---~~~eA~~~y  182 (297)
                      +..     +.+.|..+|.++-..                            +++++.+.||.+|..-.   ++..|..+|
T Consensus       300 ~g~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy  351 (552)
T KOG1550|consen  300 QGLGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYY  351 (552)
T ss_pred             cCCCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHH
Confidence            743     677788888888776                            25568899999998766   578999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKR----TRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~----g~~~eA~~~~~~al~~  221 (297)
                      ..|...  .+.. .++|+.||..-    -+.+.|..++.++.+.
T Consensus       352 ~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  352 SLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             HHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence            999765  5555 78888887643    3889999999999886

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.83  E-value=0.33  Score=41.93  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=74.2

Q ss_pred             HHCCChHHHHHHHHHHHhh----CCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh
Q 022442           74 KQLDRSEEAIEAIKSFRGL----CSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK  148 (297)
Q Consensus        74 ~~~g~~~eAi~~~~~al~~----~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (297)
                      ...-.+++|++.|.-++-.    ..+ .....+..-++++|+.+|+.+.....+++|++....  ++..        .  
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~--a~~~--------e--  155 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE--AYEN--------E--  155 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--HHHh--------C--
Confidence            3445778888888765421    212 112345566899999999999888888888887421  1100        0  


Q ss_pred             hHHHhcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH--HHhHHHHH
Q 022442          149 KFQVSVRQ-ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN--KACNLGLC  201 (297)
Q Consensus       149 ~~~~~l~p-~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~--~~~nLg~~  201 (297)
                      .+  .+.+ +...+++-+|.++.++|++++|...|.+++...-.+.  ...+++.=
T Consensus       156 ~~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  156 DF--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD  209 (214)
T ss_pred             cC--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            00  0000 1234778899999999999999999999998654443  25566543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.67  E-value=0.02  Score=49.56  Aligned_cols=58  Identities=16%  Similarity=0.107  Sum_probs=54.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      ....+|.+.|.++|.+++.+-|.+..-|+.+|...-+.|+++.|.++|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4467999999999999999999999999999999999999999999999999999974

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.66  E-value=0.08  Score=51.61  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=78.8

Q ss_pred             HHHHcCCChHHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442           54 KAINAGDRVDSALKDMAVV-MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG  132 (297)
Q Consensus        54 ~al~~~p~~~~a~~~Lg~~-l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~  132 (297)
                      .+++..|.++. +++++.. ...+|+.-+|..++..++...|+.........||.++.+.|...+|--++..|+.-.|  
T Consensus       204 ~glq~~~~sw~-lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~--  280 (886)
T KOG4507|consen  204 EGLQKNTSSWV-LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD--  280 (886)
T ss_pred             HhhhcCchhHH-HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc--
Confidence            34445555554 4444444 4778888888888888888777633333445578888888888888877766665432  


Q ss_pred             hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                              ....-++.+|.+|.++|.+.-.+.+|..+++.+|...
T Consensus       281 ------------------------~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  281 ------------------------FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             ------------------------cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence                                    1112256788899999999999999999999888765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.13  Score=46.98  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhh-CCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~-~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      -+..-|+-|.+..+|..|+..|.+.++. +++ +....++++-+.+....|+|..|+.-..+++.+.|            
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P------------  150 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP------------  150 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc------------
Confidence            3456799999999999999999998874 443 34556777778888888999999998888888754            


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                    .+..+++.=+.|+.++.++++|....+..+.++-+..
T Consensus       151 --------------~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  151 --------------THLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             --------------chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence                          4556777788899999998888888888777655443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.63  E-value=0.24  Score=41.47  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      ...++..+|..|.+.|+.++|+++|.+++..+.. .........+..+....|++......+.++-.+...+..+     
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~-----  109 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW-----  109 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH-----
Confidence            4567889999999999999999999999887754 1223444556778888999999999999987764211000     


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                            ..         .......-|..++..++|.+|-..|-.++.-.
T Consensus       110 ------~~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  110 ------ER---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             ------HH---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence                  00         01133456777788899999999988876543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.50  E-value=0.032  Score=34.08  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=11.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ||.+|...|++++|+.++++++.+
T Consensus         8 la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    8 LANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcchhhHHHHHHHHH
Confidence            444455555555555555555544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.31  E-value=0.19  Score=40.65  Aligned_cols=63  Identities=17%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ..+..+..+-...++.+++..++..+.-+.|+..  .+...-|.++...|++++|+.+++...+-
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            3455555555668999999999999888999743  45556788899999999999999886664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.27  E-value=0.065  Score=48.43  Aligned_cols=64  Identities=13%  Similarity=0.039  Sum_probs=55.2

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGC  226 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~  226 (297)
                      .+.+.-....|+.++|...|..|+.++|+++. ...+|.+.....+.-+|-.+|-+++...|..+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            34455567789999999999999999999999 88999999999999999999999999854444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.77  Score=44.92  Aligned_cols=141  Identities=14%  Similarity=0.017  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHH--HHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~--Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      |...-++.++...+..+|.+++.+..  +.+.+...+....++-.++..+..+|.+.  ....+|+..+...|..-.++.
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~  122 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALA  122 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHH
Confidence            33344777787777888988887433  58888899999999999999999999853  344556666666777666665


Q ss_pred             HHHH-HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHH
Q 022442          121 MLKR-KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  198 (297)
Q Consensus       121 ~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nL  198 (297)
                      .+.+ +....|....+.+                    +...++.+|.....+|+..++.....+++++.|.++. ...+
T Consensus       123 ~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         123 DISEIAEWLSPDNAEFLG--------------------HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HHHHHHHhcCcchHHHHh--------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            5555 5555442111100                    0112233799999999999999999999999999976 5455


Q ss_pred             HHHHHHc
Q 022442          199 GLCLIKR  205 (297)
Q Consensus       199 g~~l~~~  205 (297)
                      .....++
T Consensus       183 ~~~r~~~  189 (620)
T COG3914         183 MTARQEQ  189 (620)
T ss_pred             HHHHHHh
Confidence            4444333

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=2  Score=41.40  Aligned_cols=186  Identities=19%  Similarity=0.156  Sum_probs=116.0

Q ss_pred             ccccccchhhhhhhhhcCCCCCcHHHHHHHH--HHHcCCHHHHHHHHHHHHHcC------CChH--------HHHHHHHH
Q 022442            8 KKIFSSKKEDLFHVIHKVPAGDGPYVRAKHA--QLVQKDPEAAIVLFWKAINAG------DRVD--------SALKDMAV   71 (297)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~A~~~~~~al~~~------p~~~--------~a~~~Lg~   71 (297)
                      -|++++-..+.|+-+.|-.-.  +++.+.-+  ...+|-+++|.++-+++|..-      |...        -.+.++..
T Consensus       254 e~ilgsps~~l~~wlpkeqic--aLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~  331 (629)
T KOG2300|consen  254 EKILGSPSPILFEWLPKEQIC--ALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM  331 (629)
T ss_pred             ccccCCCChHHHhhccHhhhH--hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence            355555566666554442111  22222111  124455666666666666532      2111        12445677


Q ss_pred             HHHHCCChHHHHHHHHHHHhhC---Cc-----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           72 VMKQLDRSEEAIEAIKSFRGLC---SK-----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        72 ~l~~~g~~~eAi~~~~~al~~~---P~-----~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      +-...|++.+|+..+..+...+   |.     .....++.++|.-...-|.++.|...|..+++.....           
T Consensus       332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----------  400 (629)
T KOG2300|consen  332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----------  400 (629)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----------
Confidence            7788999999999988776543   43     1123456777777778899999999999999974210           


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH----------H-HhHHHHHHHHcCCHHHHH
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------K-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----------~-~~nLg~~l~~~g~~~eA~  212 (297)
                          + .       .+-+-.|++.+|...|+-+.   .|+-.=.+.|.|.          . .+--|.....++++.||.
T Consensus       401 ----d-l-------~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK  465 (629)
T KOG2300|consen  401 ----D-L-------QAFCNLNLAISYLRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK  465 (629)
T ss_pred             ----H-H-------HHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence                0 0       12245689999999776543   4443334677643          1 234577778999999999


Q ss_pred             HHHHHHHhc
Q 022442          213 SVLEDVLYG  221 (297)
Q Consensus       213 ~~~~~al~~  221 (297)
                      ..+++.+..
T Consensus       466 ~~l~e~Lkm  474 (629)
T KOG2300|consen  466 RFLRETLKM  474 (629)
T ss_pred             HHHHHHHhh
Confidence            999999986

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.23  E-value=2.4  Score=38.88  Aligned_cols=28  Identities=14%  Similarity=0.002  Sum_probs=20.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          196 CNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       196 ~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                      ..+...+...|-.+.|+..++.+++.+.
T Consensus       158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  158 LRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            4567777777888888888888887653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.18  E-value=0.041  Score=49.67  Aligned_cols=63  Identities=22%  Similarity=0.348  Sum_probs=54.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ..+.|+.++|..+|+.|+++.                          |++++++..+|.....-.+.-+|-.+|-+||.+
T Consensus       126 ~~~~Gk~ekA~~lfeHAlala--------------------------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALA--------------------------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcC--------------------------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            357788888888888888774                          578899999999999999999999999999999


Q ss_pred             CCCcHH-HhH
Q 022442          189 DPDANK-ACN  197 (297)
Q Consensus       189 ~P~~~~-~~n  197 (297)
                      +|.|.. ..|
T Consensus       180 sP~nseALvn  189 (472)
T KOG3824|consen  180 SPGNSEALVN  189 (472)
T ss_pred             CCCchHHHhh
Confidence            999986 544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.02  E-value=0.23  Score=52.50  Aligned_cols=172  Identities=16%  Similarity=0.063  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHH------HHHHHH-HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH-------hhCCcc
Q 022442           31 PYVRAKHAQLVQKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-------GLCSKQ   96 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~------~~~~al-~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al-------~~~P~~   96 (297)
                      -++..++..+.+|.+.+|.+      ++...- .+.|.....+..|+.++...|++++|+..-+++.       ..++.+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            46777788888888887777      554322 3578888999999999999999999999766543       333321


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      .. .-+..++......+....|...+.+++.+..         .    ..+     ...|..+.+..|++.++...++++
T Consensus      1014 t~-~~y~nlal~~f~~~~~~~al~~~~ra~~l~~---------L----s~g-----e~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1014 TK-LAYGNLALYEFAVKNLSGALKSLNRALKLKL---------L----SSG-----EDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred             HH-HHhhHHHHHHHhccCccchhhhHHHHHHhhc---------c----ccC-----CCCCchhhhhhHHHHHHhhHHHHH
Confidence            11 1223356667778888899999988888731         0    000     123555567789999999999999


Q ss_pred             HHHHHHHHHHHhC-----CCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          177 AAEVVYQKAQMID-----PDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       177 eA~~~y~~Al~~~-----P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .|+.+.+.|+..+     |...   . ...++.+...+|++..|....+.....
T Consensus      1075 ~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            9999999999864     2222   1 345677777777777776666655443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=95.01  E-value=0.066  Score=34.03  Aligned_cols=41  Identities=29%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 022442          196 CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLE  241 (297)
Q Consensus       196 ~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~  241 (297)
                      ++|+.+|+.+|+++.|...+++++..   ++  .....+|..++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~---~~--~~q~~eA~~LL~~   43 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE---GD--EAQRQEARALLAQ   43 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc---CC--HHHHHHHHHHHhc
Confidence            57889999999999999999998863   22  2333566666653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.00  E-value=0.03  Score=31.20  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHH
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ++.+||.++..+|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            56677777888888887777765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.86  E-value=1.6  Score=39.91  Aligned_cols=99  Identities=10%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-c----------
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-Q----------   96 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~----------   96 (297)
                      ......+..+.|.++.|...+.++...++    ..+...+.-+.++-..|+..+|+..++..+..... .          
T Consensus       149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF02259_consen  149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK  228 (352)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence            33344556789999999999999888552    24567778899999999999999999887761110 0          


Q ss_pred             ---------------------hHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhc
Q 022442           97 ---------------------SQESLDNVLIDLYKKC------GKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        97 ---------------------~~~~l~~~L~~ly~~~------g~~~eAi~~~~~al~~~p  130 (297)
                                           ........+|......      +..++++..|+++++..|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             hccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                 0112233445555555      777788888888887754

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.83  E-value=0.14  Score=48.96  Aligned_cols=130  Identities=16%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHHHcCCHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P-~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      ++..||.-.|-.-.+.+++..|..|......+.+...+|.|+.+...+.-+-..-. .+.  ... ++-.-+...|++++
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~--~~~-~~~r~~~~l~r~~~  375 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS--TLR-CRLRSLHGLARWRE  375 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch--HHH-HHHHhhhchhhHHH
Confidence            56789999999999999999999999888889999999999999988765433222 111  122 23334578899999


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC  196 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~  196 (297)
                      |...-.-.|.-.                          -++++++.--+..-.++|-+++|...+++.+.++|.... |.
T Consensus       376 a~s~a~~~l~~e--------------------------ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v  429 (831)
T PRK15180        376 ALSTAEMMLSNE--------------------------IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV  429 (831)
T ss_pred             HHHHHHHHhccc--------------------------cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence            987655544321                          123344444444556778899999999999999886554 54


Q ss_pred             H
Q 022442          197 N  197 (297)
Q Consensus       197 n  197 (297)
                      |
T Consensus       430 ~  430 (831)
T PRK15180        430 N  430 (831)
T ss_pred             e
Confidence            4

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.71  E-value=0.2  Score=37.19  Aligned_cols=68  Identities=16%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      .+.|++.+|++.+.+............         ...        ....++.++|.++...|++++|+..+++|+++.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~--------~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSS---------SNS--------GLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccch---------hhH--------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            578999999999999888742110000         000        123468889999999999999999999999986


Q ss_pred             CCcHH
Q 022442          190 PDANK  194 (297)
Q Consensus       190 P~~~~  194 (297)
                      ....+
T Consensus        72 re~~D   76 (94)
T PF12862_consen   72 RENGD   76 (94)
T ss_pred             HHHCC
Confidence            65443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.65  E-value=0.15  Score=37.87  Aligned_cols=73  Identities=19%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcH---------H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDAN---------K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL  239 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~---------~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l  239 (297)
                      .+.|+|.+|++.+.+.++......         . ..++|.+....|++++|+..+++++... +...+...+..+...+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A-re~~D~~~l~~al~~~   87 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA-RENGDRRCLAYALSWL   87 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Confidence            578999999999999998643221         2 5789999999999999999999999862 2233444555555555


Q ss_pred             HHHH
Q 022442          240 LELE  243 (297)
Q Consensus       240 ~~~~  243 (297)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            5443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.59  E-value=0.19  Score=48.12  Aligned_cols=102  Identities=10%  Similarity=0.049  Sum_probs=71.5

Q ss_pred             CCcHHHHHH-HHHHHcCCHHHHHHHHHHH-HHcCCC------hHH--HHHHHHHHHHHCCChHHHHHHHHHHHh-h----
Q 022442           28 GDGPYVRAK-HAQLVQKDPEAAIVLFWKA-INAGDR------VDS--ALKDMAVVMKQLDRSEEAIEAIKSFRG-L----   92 (297)
Q Consensus        28 ~~~~~~~~~-~~~~~~g~~~~A~~~~~~a-l~~~p~------~~~--a~~~Lg~~l~~~g~~~eAi~~~~~al~-~----   92 (297)
                      +..++.-+| +.....|++.+|.+++-.. +...|.      ...  .|.|||.++.++|.|.-++..|.++++ .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            334444443 5666789999999887532 112222      222  367999999999999999999999885 1    


Q ss_pred             ----CCc-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           93 ----CSK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        93 ----~P~-------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                          -|.       +-...+.+++|.+|...||.-+|.++|.+++...
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence                121       0012334558999999999999999999999874

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.47  E-value=1.2  Score=39.82  Aligned_cols=210  Identities=16%  Similarity=0.214  Sum_probs=121.9

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-----chHHHHHHHHHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQESLDNVLIDLYK  110 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-----~~~~~l~~~L~~ly~  110 (297)
                      +.+.++++|+.-|++++.+.+...    .|+..+-.+...+|++++-...|++++..-..     ...-....+| +--.
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il-DyiS  116 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL-DYIS  116 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHh
Confidence            356689999999999999887753    36777888899999999999888876543211     1111222222 2223


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH----HHHHHHHHHCCChHHHHHHHHHHH
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l----~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      ...+.+--...|+-.|+.-.+  +                      .+.+.|    .-||.+|+..|.|..-.+.+++.-
T Consensus       117 tS~~m~LLQ~FYeTTL~ALkd--A----------------------KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh  172 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALKD--A----------------------KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH  172 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHHh--h----------------------hcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence            444555555555555543110  0                      011122    348899999988888777776654


Q ss_pred             H-hCCCcH-----------HHhHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhcCCCCchhh
Q 022442          187 M-IDPDAN-----------KACNL-GLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLELESKQPPPDLSD  253 (297)
Q Consensus       187 ~-~~P~~~-----------~~~nL-g~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~  253 (297)
                      . +..++.           ..+.| ...|..+.+-..-..+|++++... ...+++.    ..-..++|++...-.+-.+
T Consensus       173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK-SAIPHPl----ImGvIRECGGKMHlreg~f  247 (440)
T KOG1464|consen  173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK-SAIPHPL----IMGVIRECGGKMHLREGEF  247 (440)
T ss_pred             HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh-ccCCchH----HHhHHHHcCCccccccchH
Confidence            3 221111           12333 345666677777778888888752 2234454    5556677765443222222


Q ss_pred             hhcccchhHHHHHHHHHHhhcCcccCCCc
Q 022442          254 LLGLNLEDEFVNGLEEMVRVWAPSRSKRL  282 (297)
Q Consensus       254 ~~~~~~~d~~~~~~~~~l~~~~~yr~~~~  282 (297)
                      .-+   +.+|-++|.++-..-.|-|..|+
T Consensus       248 e~A---hTDFFEAFKNYDEsGspRRttCL  273 (440)
T KOG1464|consen  248 EKA---HTDFFEAFKNYDESGSPRRTTCL  273 (440)
T ss_pred             HHH---HhHHHHHHhcccccCCcchhHHH
Confidence            222   36788888887433335555555

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.44  E-value=3.4  Score=42.47  Aligned_cols=163  Identities=15%  Similarity=0.078  Sum_probs=100.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLI  106 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~  106 (297)
                      ..+.+..|++++|+++.+.++..=|..     .-++..+|.+.+-.|++++|..+.+.+.+..-.    .-.....+.-+
T Consensus       465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s  544 (894)
T COG2909         465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS  544 (894)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            346778899999999999999855543     235667889999999999999988887666332    11111223346


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCc---HHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~---~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      .++..+|+..-|...-...+...               .+     +.-.|-+   ..+...+.++|..   ++.+....+
T Consensus       545 ~il~~qGq~~~a~~~~~~~~~~~---------------q~-----l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear  601 (894)
T COG2909         545 EILEAQGQVARAEQEKAFNLIRE---------------QH-----LEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR  601 (894)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHH---------------HH-----hhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence            77788884333332221111110               00     0000111   1234445555554   777777777


Q ss_pred             HHHHhC----CCcH--H--HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMID----PDAN--K--ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~----P~~~--~--~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+++.    |...  .  .++|+.++...|++++|...+.++...
T Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            777653    3222  2  237899999999999999988887765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.41  E-value=0.15  Score=30.88  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHCCChHHHHHH--HHHHHHhCCCc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVV--YQKAQMIDPDA  192 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~--y~~Al~~~P~~  192 (297)
                      +.+..+|..+.++|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3567889999999999999999  66888887764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.38  E-value=5.4  Score=41.06  Aligned_cols=162  Identities=15%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHH-HHc--CCC------------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           35 AKHAQLVQKDPEAAIVLFWKA-INA--GDR------------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~a-l~~--~p~------------------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      +..-++..||++.|..+.++- .++  ..+                  .|.....-+-.+..+.+++||..++.++...-
T Consensus       366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l  445 (894)
T COG2909         366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL  445 (894)
T ss_pred             HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence            344456788888888877765 111  111                  12223334566778899999999998876543


Q ss_pred             Cc-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442           94 SK-------QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus        94 P~-------~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg  166 (297)
                      |.       +-...+.-.-+.+....|++++|++.-+.++..-|....+.                     -..++.++|
T Consensus       446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~---------------------r~~~~sv~~  504 (894)
T COG2909         446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS---------------------RIVALSVLG  504 (894)
T ss_pred             CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh---------------------hhhhhhhhh
Confidence            32       11112333345677888999999999999999866332211                     112677899


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCC----CcHH-Hh--HHHHHHHHcC--CHHHHHHHHHH
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDP----DANK-AC--NLGLCLIKRT--RYNEARSVLED  217 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P----~~~~-~~--nLg~~l~~~g--~~~eA~~~~~~  217 (297)
                      .+..-.|++++|..+.+.+.++.-    -.-. |.  .-+.++..+|  .+++....+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~  564 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL  564 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999999998843    2223 33  3478889999  33444444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.31  E-value=4.2  Score=37.31  Aligned_cols=165  Identities=11%  Similarity=-0.000  Sum_probs=107.5

Q ss_pred             hhhhhhhhcCCCCCcHHHHHHHHHH---H---------cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH
Q 022442           16 EDLFHVIHKVPAGDGPYVRAKHAQL---V---------QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI   83 (297)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi   83 (297)
                      .++...+.+.|.+..+-......+-   .         ..-.+.-+..|++|++.+|+....+..+=....+....++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4555677777776666544432221   1         011456788999999999999988887777888888899999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYK--KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~--~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                      ..+++++..+|++.. -|...|-....  ..-.+++....|.++|........-.      ...+....  .++.....+
T Consensus        86 ~~we~~l~~~~~~~~-LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~------~~~~~~~~--~~e~~~l~v  156 (321)
T PF08424_consen   86 KKWEELLFKNPGSPE-LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR------MTSHPDLP--ELEEFMLYV  156 (321)
T ss_pred             HHHHHHHHHCCCChH-HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc------cccccchh--hHHHHHHHH
Confidence            999999999997532 22222222222  23468899999999998743110000      00000000  000012246


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          162 LGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       162 l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      +..+...+.+.|-.+.|+.+++-.++++
T Consensus       157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  157 FLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            7788999999999999999999999986

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.22  E-value=0.66  Score=37.62  Aligned_cols=78  Identities=10%  Similarity=-0.032  Sum_probs=59.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      ..-+.+...+++++..++...--+.|+.++.-..-|.++++.|++.||+.+++....-.|..+.  .--+++.++..+|+
T Consensus        16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~--~kAL~A~CL~al~D   93 (153)
T TIGR02561        16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY--GKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH--HHHHHHHHHHhcCC
Confidence            3345667899999999998766699999999999999999999999999999998877664221  11224455555554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.22  E-value=1.3  Score=46.12  Aligned_cols=180  Identities=15%  Similarity=0.128  Sum_probs=117.7

Q ss_pred             cchhhhhhhhhcCCCCCcHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442           13 SKKEDLFHVIHKVPAGDGPYVRAKHAQL-VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG   91 (297)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~   91 (297)
                      .--+|+|...++..    .+..+..+.+ .-+..+.|.++-++.     +.+..|..+|.+-.+.|+..+||+.|-++  
T Consensus      1062 ~LyEEAF~ifkkf~----~n~~A~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD----MNVSAIQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred             hHHHHHHHHHHHhc----ccHHHHHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence            33578888887774    3445556655 337788888777653     55788999999999999999999987443  


Q ss_pred             hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--ch--hh-hhc-CcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442           92 LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQ--GE-AFN-GKPTKTARSHGKKFQVSVRQETSRLLGNL  165 (297)
Q Consensus        92 ~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~--p~--~~-~~~-~~~~~~~~~~~~~~~~~l~p~~~~~l~nL  165 (297)
                      -+|..     +....++-.+.|.|++-+..+.-|-+..  |.  ++ .+. .+..++.  ....  .-.-|+.+. ....
T Consensus      1131 dDps~-----y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~--elE~--fi~gpN~A~-i~~v 1200 (1666)
T KOG0985|consen 1131 DDPSN-----YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT--ELEE--FIAGPNVAN-IQQV 1200 (1666)
T ss_pred             CCcHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH--HHHH--HhcCCCchh-HHHH
Confidence            34532     1123445578899999988776654432  10  11 010 0000000  0000  112244443 3568


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.-+...|.|+.|.-+|.-        .. |..|+..+..+|+|..|.+.-+++-..
T Consensus      1201 Gdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred             hHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence            9999999999999888854        44 888999999999999999998887553

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.13  E-value=0.15  Score=33.83  Aligned_cols=33  Identities=15%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      +.++.+|+.+.++|+|++|...++.+++..|++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            567889999999999999999999999999984

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.81  E-value=1.6  Score=40.81  Aligned_cols=142  Identities=15%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--HHcCCHHH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY--KKCGKVEE  117 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly--~~~g~~~e  117 (297)
                      +..+|++.=+.+    ++.+|-+.+++..++.++.++|++..|.+.+++++-..-.    .++.......  ...|+   
T Consensus        21 v~~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~----~~~~~F~~~~~~~~~g~---   89 (360)
T PF04910_consen   21 VQSHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER----AFHPSFSPFRSNLTSGN---   89 (360)
T ss_pred             HHccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHhhhhhcccccCc---
Confidence            345566544433    4567888888888888888888888888888887644322    1111000000  00000   


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-cHH--
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-ANK--  194 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~-~~~--  194 (297)
                              ..+ |           .....++.+        -.+++.....+.+.|-+..|+++.+-.+.++|+ |+-  
T Consensus        90 --------~rL-~-----------~~~~eNR~f--------flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~  141 (360)
T PF04910_consen   90 --------CRL-D-----------YRRPENRQF--------FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV  141 (360)
T ss_pred             --------ccc-C-----------CccccchHH--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence                    000 0           000011111        125677788889999999999999999999998 764  


Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          195 ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       195 ~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      .+.+=..-++.++++==++.++....
T Consensus       142 ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  142 LLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            44555566677788777777776554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.66  E-value=0.79  Score=35.21  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      .-+.+.|++-+|+++.+..+.....+....    -....+|..|. ++-+-+++++-..    |     .--|+++|.++
T Consensus         4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~if~~lA~~ten~d~k~~----y-----Ll~sve~~s~a   70 (111)
T PF04781_consen    4 KDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTIFYKLAKKTENPDVKFR----Y-----LLGSVECFSRA   70 (111)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHHHHHHHHhccCchHHHH----H-----HHHhHHHHHHH
Confidence            346789999999999999988754322000    01112222221 1111122222111    1     23478999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+.|+.+. .+.||.-+-..--|+++....++.|..
T Consensus        71 ~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   71 VELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            999999987 888888777777888888888888875

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.50  E-value=0.094  Score=29.11  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHH
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      ++..+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555556666666666555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=0.34  Score=43.06  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS   97 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~   97 (297)
                      ++..+..+++++.|...-.+.+.++|.++.-+..-|.+|.++|-+.-|+.-++.++..+|+++
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            455677888999999999999999999998888899999999999999999998888889743

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.24  E-value=0.99  Score=38.48  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=74.9

Q ss_pred             cccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442           11 FSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKS   88 (297)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~   88 (297)
                      ++-+.++.=......-++..|+  +.+.++..-.-+.|..-|-++ +..|  +.++..+.||..|. .-+.++|+.++-+
T Consensus        90 ~~~s~~~l~~L~~~tk~S~dP~--llYy~Wsr~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~  165 (203)
T PF11207_consen   90 LLHSYQELERLQEETKNSQDPY--LLYYHWSRFGDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLR  165 (203)
T ss_pred             HHHHHHHHHHHHHHHccCCCcc--HHHHHhhccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHH
Confidence            3445555555566666677776  566677774446677666543 3333  36778888998887 5788999999999


Q ss_pred             HHhhCCc--chHHHHHHHHHHHHHHcCCHHHHH
Q 022442           89 FRGLCSK--QSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        89 al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ++++.+.  +.+..+...|+++|.++|+++.|-
T Consensus       166 ~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  166 ALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            9987664  345567778999999999999874

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.79  E-value=1.2  Score=34.23  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=24.4

Q ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       156 p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      |+.+..++.||.=+-...-|+++..--+++|.+
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            445667888887776677788888888888765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.66  E-value=11  Score=36.98  Aligned_cols=169  Identities=15%  Similarity=0.060  Sum_probs=101.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc---C
Q 022442           51 LFWKAINAGDRVDSALKDMAVVMKQLDR--------------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC---G  113 (297)
Q Consensus        51 ~~~~al~~~p~~~~a~~~Lg~~l~~~g~--------------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~---g  113 (297)
                      .|++++..-+-.++.|+.-+.-+...++              .+|+..+|++++..--.. ...++..+++--...   +
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n  345 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDN  345 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccc
Confidence            4566666566678888877776666666              788888999887654321 112333332211111   1


Q ss_pred             CHHHHHHHHHHHHHhhchh--hhhcCcchhHHhhhhh-----hHHH-hcCCCcHHHHHHHHHH---HHHCCChHHHHHHH
Q 022442          114 KVEEQIEMLKRKLRLIYQG--EAFNGKPTKTARSHGK-----KFQV-SVRQETSRLLGNLAWA---YMQKTNFMAAEVVY  182 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~--~~~~~~~~~~~~~~~~-----~~~~-~l~p~~~~~l~nLg~~---y~~~g~~~eA~~~y  182 (297)
                      ..+.--..|++++.+...+  -.++....-..+..|-     .|.. --++-.. -+.-.+.+   |.-+++..-|..+|
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-hhVfVa~A~mEy~cskD~~~AfrIF  424 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-HHVFVAAALMEYYCSKDKETAFRIF  424 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-chhhHHHHHHHHHhcCChhHHHHHH
Confidence            3556677788877763211  1221111001111110     0110 0001111 12223333   45589999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +--|...+|.+. .+.....+...|+-..|..+|++++..
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999999999998 777888999999999999999999986

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.51  E-value=1.2  Score=39.97  Aligned_cols=63  Identities=16%  Similarity=0.026  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      ...++..++..+...|+++.++..+++.+.++|-+.. +..|-.+|...|+...|+..|+++-.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3458899999999999999999999999999999998 99999999999999999999998765

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=1.2  Score=44.06  Aligned_cols=96  Identities=18%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      +.-.++..+|..+++.|...++-.|.+.-            .        -+++....+|..||..+...|.|.++|++|
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~------------~--------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA  420 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNY------------S--------DRFAKIQRALQVCYLKLEQLDNAVEVYQEA  420 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhh------------h--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44557888999999999999987663311            0        123457889999999999999999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      -+.+|.++- ..-+......-|.-++|+.+..++...
T Consensus       421 E~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  421 EEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            999999995 444455566778899999988877654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.35  E-value=2  Score=40.66  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=76.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      +.-+.++|.|.-|+.-|+-+|++...+.+..--.   ....++.+.+     ...+-..|..||..+++.+-|+.+-.+.
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~---~~~~~di~~v-----aSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPF---KASAEDISSV-----ASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCChhhHHHH-----HHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            5667889999999999999999976554432100   0001111111     1124467999999999999999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  216 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~  216 (297)
                      +.++|.... ++.-+.|...+.||.+|..-.-
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987 8888999999999999876543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.28  E-value=0.24  Score=30.39  Aligned_cols=30  Identities=27%  Similarity=0.237  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      +++..||.+-...++|++|+.-|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.11  E-value=12  Score=36.11  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=46.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHH-------HHHHHhh---------CCcchHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEA-------IKSFRGL---------CSKQSQE   99 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~-------~~~al~~---------~P~~~~~   99 (297)
                      ..++..||++++....+. -++-|..+ +-...++..+.++|.++.|+..       |+-++++         .-.-...
T Consensus       269 k~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~  347 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDP  347 (443)
T ss_dssp             HHHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTH
T ss_pred             HHHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcH
Confidence            345667888886666641 12222222 2244566666777777777653       2222222         2110112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLR  127 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~  127 (297)
                      ..+..||++...+|+++-|+.+|+++=.
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            3555689999999999999999988543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=5.9  Score=39.03  Aligned_cols=114  Identities=21%  Similarity=0.081  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                      ++.++..-+..+|.+....+.+.+...+...+....+....+.++..                          +|+++.+
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--------------------------~~~~~~~  103 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--------------------------NPENCPA  103 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--------------------------CcccchH
Confidence            45555555556665432222232455566677777777766666665                          4567788


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHH-HHHhCCCcHH-HhH------HHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          162 LGNLAWAYMQKTNFMAAEVVYQK-AQMIDPDANK-ACN------LGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       162 l~nLg~~y~~~g~~~eA~~~y~~-Al~~~P~~~~-~~n------Lg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..|||.+....|....+...+.. +....|++.. ...      ++..+..+|+..++....++++..
T Consensus       104 ~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~  171 (620)
T COG3914         104 VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL  171 (620)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999888877777776666 9999999986 444      488888889999999999988886

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.55  E-value=9.8  Score=34.03  Aligned_cols=129  Identities=13%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHc----CCCh----HHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhC----Cc-----c---
Q 022442           38 AQLVQKDPEAAIVLFWKAINA----GDRV----DSALKDMAVVMKQLD-RSEEAIEAIKSFRGLC----SK-----Q---   96 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~----~p~~----~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~----P~-----~---   96 (297)
                      .++.+||++.|..++.|+-..    +|+.    ...+++.|.-+...+ ++++|+..++++.++.    +.     +   
T Consensus         2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            457899999999999987663    3443    456888999999999 9999999999987773    21     1   


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH-HHHHHHHHHCCCh
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL-GNLAWAYMQKTNF  175 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l-~nLg~~y~~~g~~  175 (297)
                      -.......|+.+|...+.++.... ..++++...             ..         -|+.+.++ ..+-.+.. .++.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~-------------~e---------~~~~~~~~~L~l~il~~-~~~~  137 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEK-ALNALRLLE-------------SE---------YGNKPEVFLLKLEILLK-SFDE  137 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHH-------------Hh---------CCCCcHHHHHHHHHHhc-cCCh
Confidence            112334567888888887764444 222333210             00         12222333 23332223 7888


Q ss_pred             HHHHHHHHHHHHhCC
Q 022442          176 MAAEVVYQKAQMIDP  190 (297)
Q Consensus       176 ~eA~~~y~~Al~~~P  190 (297)
                      +++.+.+++.+.--+
T Consensus       138 ~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  138 EEYEEILMRMIRSVD  152 (278)
T ss_pred             hHHHHHHHHHHHhcc
Confidence            888888888887543

It is also involved in sporulation [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.54  E-value=1  Score=35.88  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHCC---ChHHHHHHHHHHHH-hCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHH
Q 022442          160 RLLGNLAWAYMQKT---NFMAAEVVYQKAQM-IDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK  233 (297)
Q Consensus       160 ~~l~nLg~~y~~~g---~~~eA~~~y~~Al~-~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~  233 (297)
                      ...++++|++....   +..+-+.+++..++ -.|+.. . .+-|+..+.+.|+|+.++.+.+..++.   ++++.    
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~----  105 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNR----  105 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcH----
Confidence            46799999997654   56788999999997 556555 4 678999999999999999999999996   44433    


Q ss_pred             HHHHHHHHHHh
Q 022442          234 RAEELLLELES  244 (297)
Q Consensus       234 ~a~~~l~~~~~  244 (297)
                      +|..+-+.++.
T Consensus       106 Qa~~Lk~~ied  116 (149)
T KOG3364|consen  106 QALELKETIED  116 (149)
T ss_pred             HHHHHHHHHHH
Confidence            36666555543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.41  E-value=1.8  Score=38.62  Aligned_cols=62  Identities=23%  Similarity=0.207  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|+=.+|.+.++++.|..+-.+.+.++|+++. +..-|.+|.++|.+.-|+.-+...++.
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~  244 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH  244 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence            45678889999999999999999999999999998 999999999999999999999998875

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.17  E-value=1.2  Score=40.16  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ...++..++..+...|+++.++..+++.+..+|-+  +..+..+...|.+.|+...|+..|++.-..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45577889999999999999999999999999973  455555677899999999999999997664

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.97  E-value=0.79  Score=27.69  Aligned_cols=31  Identities=23%  Similarity=0.120  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHCCChHHHHHH--HHHHHhhCC
Q 022442           64 SALKDMAVVMKQLDRSEEAIEA--IKSFRGLCS   94 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~--~~~al~~~P   94 (297)
                      +.++.+|..+.++|++++|+..  |+-+..++|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            4567778888888888888888  446655555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.81  E-value=8.9  Score=32.20  Aligned_cols=149  Identities=13%  Similarity=0.107  Sum_probs=93.6

Q ss_pred             HHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhh
Q 022442           70 AVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKK  149 (297)
Q Consensus        70 g~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  149 (297)
                      +.-+.+.|+.++|+..|..+-+-+-.....-...-.+.+..+.|+..+|+..|..+-.-.+-...        .+     
T Consensus        65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--------~r-----  131 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--------GR-----  131 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--------hh-----
Confidence            44456778999999999888776654322223344578889999999999999886654321000        00     


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Q 022442          150 FQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ-MIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE  227 (297)
Q Consensus       150 ~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al-~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~  227 (297)
                               .-+...-++++...|-|++-..-.+-.- +-+|-... .-.||..-++.|++..|...|..+.... ..|.
T Consensus       132 ---------d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da-~apr  201 (221)
T COG4649         132 ---------DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA-QAPR  201 (221)
T ss_pred             ---------HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc-cCcH
Confidence                     0133456778888898887655433211 11222223 4578999999999999999999988741 1121


Q ss_pred             chhhHHHHHHHHHHHH
Q 022442          228 DGRTRKRAEELLLELE  243 (297)
Q Consensus       228 ~~~~~~~a~~~l~~~~  243 (297)
                        .-.++|.-++.-+.
T Consensus       202 --nirqRAq~mldlI~  215 (221)
T COG4649         202 --NIRQRAQIMLDLID  215 (221)
T ss_pred             --HHHHHHHHHHHHHh
Confidence              12345665655553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.54  E-value=1.2  Score=38.03  Aligned_cols=55  Identities=22%  Similarity=0.130  Sum_probs=47.3

Q ss_pred             CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc----HH-HhHHHHHHHHcCCHHHHH
Q 022442          157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       157 ~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~----~~-~~nLg~~l~~~g~~~eA~  212 (297)
                      +++...+.||..|. ..+.++|+..|-++|++.+.+    ++ ...|+.++.++|+++.|-
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            46788999998887 789999999999999987644    35 668999999999999985

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.26  E-value=2.1  Score=43.30  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=64.3

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      ..|+++-|.++|.++=        ....--.+|.+.|++.+|..+-+++-  .|. +...++..-+.-+.+.|+|.||.+
T Consensus       777 n~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e-~t~~~yiakaedldehgkf~eaeq  845 (1636)
T KOG3616|consen  777 NKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPE-ATISLYIAKAEDLDEHGKFAEAEQ  845 (1636)
T ss_pred             cchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--Cch-hHHHHHHHhHHhHHhhcchhhhhh
Confidence            4566666666665421        11222345666677766666544432  343 223444444555677788888777


Q ss_pred             HHH------HHHHhhchhhhhcCc---chhH-HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          121 MLK------RKLRLIYQGEAFNGK---PTKT-ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       121 ~~~------~al~~~p~~~~~~~~---~~~~-~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      +|-      +++.....    .+.   ..++ .+.|++.        ..+++..+|.-|...|+..+|+..|-+|-+
T Consensus       846 lyiti~~p~~aiqmydk----~~~~ddmirlv~k~h~d~--------l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  846 LYITIGEPDKAIQMYDK----HGLDDDMIRLVEKHHGDH--------LHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             eeEEccCchHHHHHHHh----hCcchHHHHHHHHhChhh--------hhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            662      22221100    010   0011 1122221        235677788888888888888888776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.15  E-value=11  Score=36.21  Aligned_cols=127  Identities=15%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             HHCCChHHHHHHHH--HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhHHhhhhhhH
Q 022442           74 KQLDRSEEAIEAIK--SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTARSHGKKF  150 (297)
Q Consensus        74 ~~~g~~~eAi~~~~--~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~  150 (297)
                      ...|+++++....+  ..+..-|.    ..+..++.-+.++|..+.|+.+-+.--...  +-+.. |++       ...+
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~~~rF--eLAl~lg~L-------~~A~  338 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDPDHRF--ELALQLGNL-------DIAL  338 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-HHHHH--HHHHHCT-H-------HHHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCChHHHh--HHHHhcCCH-------HHHH
Confidence            34678888777665  23322332    345556667789999999886432211000  00000 100       1112


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          151 QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       151 ~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      .+.-+.+++..|..||...+.+|+++-|+.+|+++=+       +..|..+|...|+.+.=..+...+..
T Consensus       339 ~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  339 EIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            2333445677899999999999999999999998632       45666677777776555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.13  E-value=6  Score=40.18  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhH-----HHHHHHHcC-CHHHHHHHH
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACN-----LGLCLIKRT-RYNEARSVL  215 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~n-----Lg~~l~~~g-~~~eA~~~~  215 (297)
                      ..+-..+.++..++..+...|++++|-++|-.|++++.-|..|+.     .-.-.++.| +.++|..+|
T Consensus       989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen  989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred             hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence            334445678899999999999999999999999999887766543     222234445 666666665

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.85  E-value=3.3  Score=40.01  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=50.5

Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  163 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~  163 (297)
                      ..|+.+....+.|..  ++.....-..+.+.+.+--.+|.+++...                          |+++++|.
T Consensus        92 ~lyr~at~rf~~D~~--lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--------------------------p~~~dLWI  143 (568)
T KOG2396|consen   92 FLYRRATNRFNGDVK--LWLSYIAFCKKKKTYGEVKKIFAAMLAKH--------------------------PNNPDLWI  143 (568)
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHhcchhHHHHHHHHHHHhC--------------------------CCCchhHH
Confidence            456666666665432  22212222244444777777777777664                          34566676


Q ss_pred             HHHHHHHHCCC-hHHHHHHHHHHHHhCCCcHH
Q 022442          164 NLAWAYMQKTN-FMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       164 nLg~~y~~~g~-~~eA~~~y~~Al~~~P~~~~  194 (297)
                      .-+...++-+. .+.|...+.++|..+|+++.
T Consensus       144 ~aA~wefe~n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  144 YAAKWEFEINLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             hhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence            66666555554 77777788888888888775

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.85  E-value=14  Score=33.00  Aligned_cols=135  Identities=13%  Similarity=0.069  Sum_probs=87.2

Q ss_pred             HHCCChHHHHHHHHHHHhh----CCcch--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhh
Q 022442           74 KQLDRSEEAIEAIKSFRGL----CSKQS--QESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSH  146 (297)
Q Consensus        74 ~~~g~~~eAi~~~~~al~~----~P~~~--~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~  146 (297)
                      -.+|+++-|...+.++-..    .|+..  -..+.+..|.-....+ ++++|+..++++.++.......       ...+
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~-------~~~~   76 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM-------DKLS   76 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc-------cccC
Confidence            3679999999999887543    44421  1233455677777888 9999999999999985321000       0000


Q ss_pred             hhhHHHhcCCCcHHHHHHHHHHHHHCCChHH---HHHHHHHHHHhCCCcHH-H-hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMIDPDANK-A-CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       147 ~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~e---A~~~y~~Al~~~P~~~~-~-~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+...+     ...++..|+.+|.+.+.++-   |..+.+.+-.-.|+.+. . ..+-.+. +.++.+++.+.+.+++..
T Consensus        77 ~~~~el-----r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~-~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   77 PDGSEL-----RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL-KSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             CcHHHH-----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh-ccCChhHHHHHHHHHHHh
Confidence            000000     12478889999999887754   44444455556688776 3 4444333 379999999999999986

It is also involved in sporulation [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.79  E-value=1.8  Score=38.23  Aligned_cols=44  Identities=20%  Similarity=0.058  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          178 AEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       178 A~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |+.+|++|+.+.|++.. ++.||.+....|+.=+|+-+|-+++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~   45 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV   45 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence            67788888888888887 888888888888888888888888865

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.78  E-value=2  Score=45.05  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHC----C---ChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~----g---~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      .+..+.++.|+..|++...-.|.-   -+|.+.+|+.+..+    |   .+++|+..|+++-.. |..+-+-++.  +.+
T Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~  561 (932)
T PRK13184        485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYLGK--ALV  561 (932)
T ss_pred             HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHHhH--HHH
Confidence            456788999999999998888774   46889999888654    3   477777777665432 3333445565  458


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhc
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p  130 (297)
                      |.++|+++|-+++|.-|++..|
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~  583 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKRYS  583 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999865

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.58  E-value=24  Score=35.35  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHH---cCCC-hHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCcc--h--HHHHHHHHHHHHHHcCCHH
Q 022442           46 EAAIVLFWKAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRGLCSKQ--S--QESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        46 ~~A~~~~~~al~---~~p~-~~~a~~~Lg~~l~-~~g~~~eAi~~~~~al~~~P~~--~--~~~l~~~L~~ly~~~g~~~  116 (297)
                      ..|+.+++.+++   +.|. .+.+...+|.+|. ...++++|...+++++.++...  .  .......++.+|.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            457888887774   2222 2345777888886 7899999999999998887431  1  1223356788988888888


Q ss_pred             HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH-HHHHHHCCChHHHHHHHHHHHHhC--CCcH
Q 022442          117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL-AWAYMQKTNFMAAEVVYQKAQMID--PDAN  193 (297)
Q Consensus       117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL-g~~y~~~g~~~eA~~~y~~Al~~~--P~~~  193 (297)
                       |...+++.++....              .+..       .+..+..-+ ...+...+++..|+..++......  +.++
T Consensus       118 -a~~~l~~~I~~~~~--------------~~~~-------~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~  175 (608)
T PF10345_consen  118 -ALKNLDKAIEDSET--------------YGHS-------AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP  175 (608)
T ss_pred             -HHHHHHHHHHHHhc--------------cCch-------hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence             99999999986321              0000       001112222 222233389999999999999876  4554


Q ss_pred             H---HhH--HHHHHHHcCCHHHHHHHHHHHHh
Q 022442          194 K---ACN--LGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       194 ~---~~n--Lg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      .   ...  -+.+....+..++++...+++..
T Consensus       176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~  207 (608)
T PF10345_consen  176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIA  207 (608)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence            3   222  35666677878888888887754

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.57  E-value=8.3  Score=36.45  Aligned_cols=131  Identities=14%  Similarity=0.065  Sum_probs=92.8

Q ss_pred             HcCCHHHHHHHHHHHHHc----CC-----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---C-CcchHHHHHHHHHH
Q 022442           41 VQKDPEAAIVLFWKAINA----GD-----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL---C-SKQSQESLDNVLID  107 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~----~p-----~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~---~-P~~~~~~l~~~L~~  107 (297)
                      .++++.+|..+-+..+.-    +-     -.+-.|+.+..++-..|+...-...+...+..   . ....+..+.|.|-.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            557888888777665541    11     13556888999999999977766665554432   2 22345667787888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      .|...+.|+.|-....++.-  | ..+.|                   .+.++.++.+|.+-.-+++|..|.+++-.|+.
T Consensus       218 ~yL~n~lydqa~~lvsK~~~--p-e~~sn-------------------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~r  275 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVY--P-EAASN-------------------NEWARYLYYLGRIKAIQLDYSSALEYFLQALR  275 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccC--c-ccccc-------------------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence            88888999988876655331  2 11111                   13467889999999999999999999999999


Q ss_pred             hCCCcH
Q 022442          188 IDPDAN  193 (297)
Q Consensus       188 ~~P~~~  193 (297)
                      ..|++.
T Consensus       276 kapq~~  281 (493)
T KOG2581|consen  276 KAPQHA  281 (493)
T ss_pred             hCcchh
Confidence            999764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.43  E-value=1.4  Score=39.75  Aligned_cols=58  Identities=26%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      .++-.+..|.+.|.+.+|+.+.++++.++|-+.. +--|-.+|..+|+--++...|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4555688899999999999999999999999988 888999999999988888877653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.23  E-value=6.5  Score=39.67  Aligned_cols=141  Identities=13%  Similarity=-0.009  Sum_probs=76.6

Q ss_pred             HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442           73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  152 (297)
Q Consensus        73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  152 (297)
                      +.+.|++-....+++.--.-..+...+...+..|.-+...-.+++|.++|.+.-.....-+.+.  ...+   .+..-.+
T Consensus       770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly--~le~---f~~LE~l  844 (1189)
T KOG2041|consen  770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLY--RLEL---FGELEVL  844 (1189)
T ss_pred             HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHH--HHHh---hhhHHHH
Confidence            3455555555554443211111112234455677777788888888888877543321101100  0000   0000001


Q ss_pred             -hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH-------------------HHhCCCc-----HH-HhHHHHHHHHcC
Q 022442          153 -SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA-------------------QMIDPDA-----NK-ACNLGLCLIKRT  206 (297)
Q Consensus       153 -~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A-------------------l~~~P~~-----~~-~~nLg~~l~~~g  206 (297)
                       .--|++...+--+|..+...|..++|.++|-+-                   +++..++     .. ...-+.-++..+
T Consensus       845 a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~  924 (1189)
T KOG2041|consen  845 ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA  924 (1189)
T ss_pred             HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc
Confidence             112777778888999999999999998888652                   2221111     11 112344556678


Q ss_pred             CHHHHHHHHHHH
Q 022442          207 RYNEARSVLEDV  218 (297)
Q Consensus       207 ~~~eA~~~~~~a  218 (297)
                      +.-+|++.++++
T Consensus       925 ~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  925 NHMEAIEKDRKA  936 (1189)
T ss_pred             chHHHHHHhhhc
Confidence            888888888887

>PF12854 PPR_1: PPR repeat

Probab=89.13  E-value=1.1  Score=26.53  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442           99 ESLDNVLIDLYKKCGKVEEQIEMLKR  124 (297)
Q Consensus        99 ~~l~~~L~~ly~~~g~~~eAi~~~~~  124 (297)
                      ...++.|...|.+.|++++|++++++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            35667788899999999999998876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.09  E-value=9.2  Score=31.89  Aligned_cols=97  Identities=12%  Similarity=-0.033  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDN  103 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~  103 (297)
                      ++...+..+..-||.+.|++.|.++......   ..+.+.++-.+....|++......+.++-.+...  ++  ...+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4666677888999999999999998774333   2455677788888999999999998887654322  22  112233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLR  127 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~  127 (297)
                      .-|..+...|+|.+|...|-.++.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCc
Confidence            346667788999999998876554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12854 PPR_1: PPR repeat

Probab=88.99  E-value=0.94  Score=26.75  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=19.3

Q ss_pred             CCCcHHHhHHHHHHHHcCCHHHHHHHHHH
Q 022442          189 DPDANKACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       189 ~P~~~~~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      .||...+..|-..|.+.|+.++|..++++
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            45555566667777777777777776654

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.83  E-value=9.7  Score=33.38  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442          175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~  221 (297)
                      .+.|..+|++|++     +.|.+|.    .+|.+.+|. -+|+.++|+.+.++++..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3789999999986     5788884    457777664 489999999999988865

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=88.72  E-value=14  Score=35.59  Aligned_cols=129  Identities=11%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhC---Ccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLC---SKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      +-.-|.++.+++++.+|.++|.+..+.-   |..- .+.+++.+.+.|+. ++.+.    .+.-+...            
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~----Me~~l~~l------------   71 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDL----MEKQLMEL------------   71 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHH----HHHHHHHH------------
Confidence            3345888888999999998888765432   2111 12233333344332 22222    22222110            


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc-------------HH-H--hHHHHHHHHc
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA-------------NK-A--CNLGLCLIKR  205 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~-------------~~-~--~nLg~~l~~~  205 (297)
                       .         ...|..+.+..-.|.+..+.+.|.+|++.+-.--..--+.             .+ +  ...+.++++.
T Consensus        72 -~---------~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~  141 (549)
T PF07079_consen   72 -R---------QQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET  141 (549)
T ss_pred             -H---------HhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc
Confidence             0         0123344555667888888999999988776554431111             11 1  2368899999


Q ss_pred             CCHHHHHHHHHHHHhc
Q 022442          206 TRYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g~~~eA~~~~~~al~~  221 (297)
                      |++.|+..++++++..
T Consensus       142 g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  142 GRFSEGRAILNRIIER  157 (549)
T ss_pred             CCcchHHHHHHHHHHH
Confidence            9999999999998864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.64  E-value=3.1  Score=43.72  Aligned_cols=95  Identities=8%  Similarity=-0.082  Sum_probs=60.9

Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHH----HcCC---HHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           72 VMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYK----KCGK---VEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        72 ~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~----~~g~---~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ++..-..|++|+..|++.....|+  ...+.... +|..+.    ..|+   +++|+.-|++.-.-              
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  548 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFR-LGITLLEKASEQGDPRDFTQALSEFSYLHGG--------------  548 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHH-hhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--------------
Confidence            445567899999999999999996  22222221 222222    2232   44444444432211              


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                   |.-|--+..-+.+|..+|+|+|-+++|.-|++..|++|.
T Consensus       549 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        549 -------------VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             -------------CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence                         111223556788999999999999999999999999984

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.81  E-value=1.9  Score=31.00  Aligned_cols=57  Identities=14%  Similarity=0.007  Sum_probs=45.3

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH---HHHHHHHcCCHHHHHHHHHHHH
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN---LGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n---Lg~~l~~~g~~~eA~~~~~~al  219 (297)
                      ..-|.=+.++.+..+|+..+++||+..++.+. +..   |..+|...|+|.+.+.+--+=+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567999999999999999999999886 544   5678889999999887764433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.27  E-value=2.6  Score=37.23  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHH
Q 022442           48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL-CSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~-~P~~~~~~l~~~L~~ly~~  111 (297)
                      |+.+|.+|+.+.|.....++.||++....|+.=+|+=.|-+++.. .|.   .....+|..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf---~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF---PSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999888776643 343   1233335555554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.90  E-value=1.9  Score=27.29  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=22.5

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      .+||.+|..+|+.+.|.+.++.++.-.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            578889999999999999998888543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.94  E-value=21  Score=33.98  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC--------CC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMID--------PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IP----  224 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~--------P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~----  224 (297)
                      .+..|-.++.-+|+|..|++...-. +++        |. +.. .+.+|.+|+.++||.+|+..|..++.--  ..    
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~  202 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYH  202 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4566788999999999999987653 222        22 223 6889999999999999999999988530  01    


Q ss_pred             -CCc----chhhHHHHHHHHHHHHhcCCCCchhhhhcccchhHHHHHHHH
Q 022442          225 -GCE----DGRTRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEE  269 (297)
Q Consensus       225 -~~~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  269 (297)
                       .+.    -.+..++...+++=+....| .+..++....+.+.+.+-+..
T Consensus       203 ~~~~q~d~i~K~~eqMyaLlAic~~l~p-~~lde~i~~~lkeky~ek~~k  251 (404)
T PF10255_consen  203 QRSYQYDQINKKNEQMYALLAICLSLCP-QRLDESISSQLKEKYGEKMEK  251 (404)
T ss_pred             cccchhhHHHhHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHH
Confidence             111    13555556665655544332 224444444444555444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.66  E-value=23  Score=34.12  Aligned_cols=120  Identities=16%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             HcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHH--HHHHHH---------hhCCcc-hHHHHHHHHH-
Q 022442           41 VQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE--AIKSFR---------GLCSKQ-SQESLDNVLI-  106 (297)
Q Consensus        41 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~--~~~~al---------~~~P~~-~~~~l~~~L~-  106 (297)
                      ..|. -++|+.+++.+++..|.+-++....-  +.--..|.+|+.  .+-+++         .+.|-. ....+.|.|+ 
T Consensus       391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD  468 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD  468 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence            4454 56677777777777666554332211  111123444432  122221         122210 1123444453 


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          107 -DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       107 -~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                       .-+..+|+|.++.-.-.=..+                          |.| .+.++.-+|.|+....+|.||-.++.. 
T Consensus       469 AEyLysqgey~kc~~ys~WL~~--------------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~-  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTK--------------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQK-  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHH--------------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh-
Confidence             334566777766644333333                          345 677899999999999999999999876 


Q ss_pred             HHhCCCc
Q 022442          186 QMIDPDA  192 (297)
Q Consensus       186 l~~~P~~  192 (297)
                        +-|++
T Consensus       521 --LP~n~  525 (549)
T PF07079_consen  521 --LPPNE  525 (549)
T ss_pred             --CCCch
Confidence              45533

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.87  E-value=43  Score=33.17  Aligned_cols=166  Identities=13%  Similarity=0.071  Sum_probs=107.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      ..+..|+++...-+|++.+---....+.|...+..+...|+..-|-.++.++.+..-... ..+...-+.+-...|+++.
T Consensus       306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~  384 (577)
T KOG1258|consen  306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDD  384 (577)
T ss_pred             hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHH
Confidence            456789999999999998876677788899999999999999999988888776543321 2344444556677789999


Q ss_pred             HHHHHHHHHHhhchhhhhc-----------CcchhHHhhhhhhHHH----hcCCC-cHHHHHHHHHHH-HHCCChHHHHH
Q 022442          118 QIEMLKRKLRLIYQGEAFN-----------GKPTKTARSHGKKFQV----SVRQE-TSRLLGNLAWAY-MQKTNFMAAEV  180 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~----~l~p~-~~~~l~nLg~~y-~~~g~~~eA~~  180 (297)
                      |..+|++...-.| +..-+           +.. .....+......    ..++. .+..+.+.++.. .-.++.+.|..
T Consensus       385 A~~~lq~i~~e~p-g~v~~~l~~~~~e~r~~~~-~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~  462 (577)
T KOG1258|consen  385 AKVILQRIESEYP-GLVEVVLRKINWERRKGNL-EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI  462 (577)
T ss_pred             HHHHHHHHHhhCC-chhhhHHHHHhHHHHhcch-hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999887663 32110           100 000000000000    00011 122334444443 55689999999


Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRT  206 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g  206 (297)
                      .+.+++++.|++.. +..+-.+...++
T Consensus       463 ~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  463 ILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            99999999999997 766655554444

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.57  E-value=9.5  Score=27.46  Aligned_cols=62  Identities=13%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ...-|.-+..+.+.++|+..+++++..-++  +-...++ .|..+|...|+|.++++.--+=+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG-~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG-YLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677888999999999999887665  2222333 3678889999999999876665555

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=84.09  E-value=9.1  Score=40.74  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=84.8

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      .++|+.+=+.++++.-+..+     ...-=.+=.-+|||+.|+..+.++   .+....+ .-+.    -.+.|-|++|+.
T Consensus       863 SqkDPkEyLP~L~el~~m~~-----~~rkF~ID~~L~ry~~AL~hLs~~---~~~~~~e-~~n~----I~kh~Ly~~aL~  929 (1265)
T KOG1920|consen  863 SQKDPKEYLPFLNELKKMET-----LLRKFKIDDYLKRYEDALSHLSEC---GETYFPE-CKNY----IKKHGLYDEALA  929 (1265)
T ss_pred             hccChHHHHHHHHHHhhchh-----hhhheeHHHHHHHHHHHHHHHHHc---CccccHH-HHHH----HHhcccchhhhh
Confidence            44566665555554322211     111222334457888888775443   3432222 2221    278888888887


Q ss_pred             HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----------hCC
Q 022442          121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM----------IDP  190 (297)
Q Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~----------~~P  190 (297)
                      +|+--.+...  ..+.     ....|-.    .     ..-+..-|..|...|+.++|+.+|+.+..          +.+
T Consensus       930 ly~~~~e~~k--~i~~-----~ya~hL~----~-----~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~  993 (1265)
T KOG1920|consen  930 LYKPDSEKQK--VIYE-----AYADHLR----E-----ELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSE  993 (1265)
T ss_pred             eeccCHHHHH--HHHH-----HHHHHHH----H-----hccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence            7755443311  0000     0000000    0     01234567788888999999999887543          233


Q ss_pred             CcHH----HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANK----ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~----~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +-..    ...|..-+..++++-||..+....+..
T Consensus       994 ~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen  994 GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred             CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence            3222    257888899999999999999888874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=83.85  E-value=17  Score=36.63  Aligned_cols=47  Identities=15%  Similarity=0.221  Sum_probs=24.0

Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcHH--HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDANK--ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~--~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      ..+.+.++|++|.+.-++    .|...+  ++-.|..+.+..+|+||...|-+
T Consensus       781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHK  829 (1081)
T ss_pred             hheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHH
Confidence            344556666766655443    344432  34445555555555555554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.84  E-value=65  Score=34.42  Aligned_cols=158  Identities=17%  Similarity=0.187  Sum_probs=91.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      ..+++..+=+++|...|.+    ...+..|   +-++.-..+..+.|.+.-+++   +-.    .++.-++....+.|..
T Consensus      1055 a~iai~~~LyEEAF~ifkk----f~~n~~A---~~VLie~i~~ldRA~efAe~~---n~p----~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKK----FDMNVSA---IQVLIENIGSLDRAYEFAERC---NEP----AVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHH----hcccHHH---HHHHHHHhhhHHHHHHHHHhh---CCh----HHHHHHHHHHHhcCch
Confidence            3455566667888888865    2333333   233445567777777765443   221    3445578888999999


Q ss_pred             HHHHHHHHHHHHhhchhhhhc--------CcchhHHhhhhhhHHHh-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          116 EEQIEMLKRKLRLIYQGEAFN--------GKPTKTARSHGKKFQVS-VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~--------~~~~~~~~~~~~~~~~~-l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .+||+.|-+|=   .++....        +....+    -+.+++. -+-.-+.+-..|-.+|.+.++..|-++.     
T Consensus      1121 ~dAieSyikad---Dps~y~eVi~~a~~~~~~edL----v~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~f----- 1188 (1666)
T KOG0985|consen 1121 KDAIESYIKAD---DPSNYLEVIDVASRTGKYEDL----VKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEF----- 1188 (1666)
T ss_pred             HHHHHHHHhcC---CcHHHHHHHHHHHhcCcHHHH----HHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHH-----
Confidence            99999886632   2211110        110000    0001110 0001122334455677777777776553     


Q ss_pred             HhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          187 MIDPDANKACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       187 ~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      -..|+.+.....|.-+...|.|+.|.-+|..+-
T Consensus      1189 i~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1189 IAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred             hcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence            246777778888998899999999988876543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.81  E-value=25  Score=29.60  Aligned_cols=145  Identities=14%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-chH-HHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV--DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQ-ESLDNVL  105 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-~~~-~~l~~~L  105 (297)
                      .+|..+..+. .++..++|+..|...-+.+-..  .-+.+..|.++.+-|+.++|+..|..+-...|- ..- .....--
T Consensus        60 d~flaAL~lA-~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALKLA-QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHHHH-HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            3444444444 5788899999887655533222  235677899999999999999999988766552 111 1122224


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      +.++...|.|++-..-.+.. .-  ++     +                 |=-..+.-.||.+-.+.|++..|...|...
T Consensus       139 a~lLvD~gsy~dV~srvepL-a~--d~-----n-----------------~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPL-AG--DG-----N-----------------PMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHhccccHHHHHHHhhhc-cC--CC-----C-----------------hhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            56778889888766533221 10  00     0                 111235567999999999999999999998


Q ss_pred             HHhCCCcHH-HhHHHHH
Q 022442          186 QMIDPDANK-ACNLGLC  201 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~  201 (297)
                      .. +.+.+. ..+.+.+
T Consensus       194 a~-Da~aprnirqRAq~  209 (221)
T COG4649         194 AN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             Hc-cccCcHHHHHHHHH
Confidence            76 433333 4444443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=83.73  E-value=4.8  Score=39.31  Aligned_cols=90  Identities=18%  Similarity=0.019  Sum_probs=56.2

Q ss_pred             CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442           77 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI---EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  153 (297)
Q Consensus        77 g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi---~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (297)
                      +....||..|.+++...|.. ..-+.+ -+.++.+.+=...+.   .-...++++                         
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~-~~~l~n-raa~lmkRkW~~d~~~AlrDch~Alrl-------------------------  440 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDA-IYLLEN-RAAALMKRKWRGDSYLALRDCHVALRL-------------------------  440 (758)
T ss_pred             HHHHHHHHHHHHHhhhccch-hHHHHh-HHHHHHhhhccccHHHHHHhHHhhccC-------------------------
Confidence            34557778888888877762 222223 334444433222222   222233333                         


Q ss_pred             cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                       +|-.-.+++.|+.++.+++++.+|+.+...+....|.+..
T Consensus       441 -n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  441 -NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             -ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence             3344468899999999999999999999888888886665

>smart00101 14_3_3 14-3-3 homologues

Probab=83.67  E-value=30  Score=30.48  Aligned_cols=47  Identities=17%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442          175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~  221 (297)
                      .+.|..+|+.|++     +.|.+|.    .+|.+.+|. -+++.++|..+-++++..
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999986     4588884    356666655 469999999888887764

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=83.13  E-value=39  Score=38.85  Aligned_cols=162  Identities=15%  Similarity=0.125  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHH---c----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           45 PEAAIVLFWKAIN---A----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        45 ~~~A~~~~~~al~---~----~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      ..+-+-.+++++-   .    +....+.|...|.+-...|+++.|-.++-.+-+..+.    .++...+.++-.+|+...
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHH
Confidence            4445555555543   2    3446789999999999999999999998888777654    355557788899999999


Q ss_pred             HHHHHHHHHHhhchhhh--hcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhCCCcH
Q 022442          118 QIEMLKRKLRLIYQGEA--FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF--MAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~--~eA~~~y~~Al~~~P~~~  193 (297)
                      |+..+++.+..+-++..  ++..+..      +..  .   -...+..-++....+.|++  ..-+..|+.|.++.|...
T Consensus      1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~------~n~--~---i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQS------VNL--L---IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred             HHHHHHHHHHhhcccccCCccccchh------hhh--h---hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence            99999999987532211  0000000      000  0   0123455566666666664  456788999999999777


Q ss_pred             H-HhHHHHHHHH------------cCCHHH---HHHHHHHHHhc
Q 022442          194 K-ACNLGLCLIK------------RTRYNE---ARSVLEDVLYG  221 (297)
Q Consensus       194 ~-~~nLg~~l~~------------~g~~~e---A~~~~~~al~~  221 (297)
                      . ++.||..|.+            .|++..   ++..|.+++..
T Consensus      1790 ~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1790 DKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred             CceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHh
Confidence            6 7777755433            366666   55555666654

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=82.62  E-value=36  Score=31.61  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML  122 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~  122 (297)
                      ..|+++-.++||..||++.++.+.+-.|-..-.+++-+|...+....-|.+...++
T Consensus       279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888899999999988888777774222233334444445555454444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.51  E-value=23  Score=35.34  Aligned_cols=49  Identities=22%  Similarity=0.084  Sum_probs=31.3

Q ss_pred             HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ..+.||++.|.++.   .+.+.    +.-+..||++....|++..|.+++.++-.+
T Consensus       647 al~lgrl~iA~~la---~e~~s----~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~  695 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLA---VEANS----EVKWRQLGDAALSAGELPLASECFLRARDL  695 (794)
T ss_pred             hhhcCcHHHHHHHH---Hhhcc----hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence            34556666665542   22222    123344788888889999999998887665

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.30  E-value=37  Score=30.46  Aligned_cols=124  Identities=13%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH-HHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE-EQIE  120 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~-eAi~  120 (297)
                      .....|+++.+.+|.++|.+-..|+.--.++..++ +..+-++.+...+.-+|++.+...+.  -.+....|++. .-++
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR--r~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR--RVIVELLGDPSFRELE  134 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH--HHHHHHhcCcccchHH
Confidence            34455666666666666665555555554444333 34444555555555556543321111  11223344444 3344


Q ss_pred             HHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      ..++++..                          +..+-.++...-|++..-+.|+.-+.+-.+.|+.+--|..
T Consensus       135 f~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS  182 (318)
T KOG0530|consen  135 FTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS  182 (318)
T ss_pred             HHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            44444432                          1124456666667777777777777777777766665554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.02  E-value=3.4  Score=25.28  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      .+..||.+-...++|++|+.-|+++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45568888899999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=81.69  E-value=16  Score=29.23  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHCC---ChHHHHHHHHHHHh-hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442           63 DSALKDMAVVMKQLD---RSEEAIEAIKSFRG-LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      .+..++++-++....   +..+.|.+++..++ -.|..-.+-++ .|+.-+.+.|+|++++.+.+..|+..|
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~ly-YLAvg~yRlkeY~~s~~yvd~ll~~e~  102 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLY-YLAVGHYRLKEYSKSLRYVDALLETEP  102 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhh-hhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence            345666666665543   34455666666664 33432222222 255556667777777777777666654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.63  E-value=8.9  Score=33.36  Aligned_cols=58  Identities=14%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      .+..+...+|+...+.-++.+|.+...-+.+-.+|.-.|++++|..-++-+-.+.|++
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            4578899999999999999999999999999999999999999999999999998874

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.12  E-value=41  Score=30.19  Aligned_cols=156  Identities=12%  Similarity=0.049  Sum_probs=90.8

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      .-+.-+|+++.+.--.+.++  ..++.++..+|+..+..+.                 +...|+.+.+.++.++|.+. +
T Consensus        19 ~Dv~PlpqdDg~npvv~I~Y--te~fr~~m~YfRAI~~~~E-----------------~S~RAl~LT~d~i~lNpAnY-T   78 (318)
T KOG0530|consen   19 SDVTPLPQDDGPNPVVKIAY--TEDFRDVMDYFRAIIAKNE-----------------KSPRALQLTEDAIRLNPANY-T   78 (318)
T ss_pred             ccCccCCCCCCCCcceEeee--chhHHHHHHHHHHHHhccc-----------------cCHHHHHHHHHHHHhCcccc-h
Confidence            33444454444332222222  3466777777766555443                 34456666677777777632 2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH-HH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM-AA  178 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~-eA  178 (297)
                      .+.+-.-.+-.-..+..+-++.+.+.++-+|                          .+-.++...-.+....|++. .-
T Consensus        79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~np--------------------------KNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNP--------------------------KNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc--------------------------cchhHHHHHHHHHHHhcCcccch
Confidence            2322111111222346666777777666543                          23346666666777777776 67


Q ss_pred             HHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++..++++..+..|-. |...-.++..-+.++.-+.+..+.++.
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~  176 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE  176 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            7777777777776665 777777777777777777777777754

>PF13041 PPR_2: PPR repeat family

Probab=81.08  E-value=4.2  Score=25.85  Aligned_cols=29  Identities=34%  Similarity=0.436  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ..++.+...|.+.|++++|.++|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            45677888999999999999999998875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=81.01  E-value=42  Score=34.21  Aligned_cols=115  Identities=18%  Similarity=0.235  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHH----------------------HhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSF----------------------RGLCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~a----------------------l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      ..|+.++|..+..+-.+++|.+.|...                      ...-|++.  .+.-.+|+.+...|-.++|.+
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s--~llp~~a~mf~svGMC~qAV~  873 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDS--ELLPVMADMFTSVGMCDQAVE  873 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCccc--chHHHHHHHHHhhchHHHHHH
Confidence            467888999888888899988877521                      22234422  344457888889999999998


Q ss_pred             HHHHHHHhhchhhhhc-CcchhHHhhhhhhHHHhcC---CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          121 MLKRKLRLIYQGEAFN-GKPTKTARSHGKKFQVSVR---QETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       121 ~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~l~---p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      +|-+   ...+.++.. ...   ....++...++-.   |+--..+..-+.-+.+.++..+|++.+|+|
T Consensus       874 a~Lr---~s~pkaAv~tCv~---LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  874 AYLR---RSLPKAAVHTCVE---LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHh---ccCcHHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            8855   222222211 000   0001111111000   111122333455567788999999999988

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=81.00  E-value=17  Score=35.30  Aligned_cols=86  Identities=10%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      .-..+|+.|+...+.+...|.+-.....+.+-+.+--.+|.+++..+|+++.. |....-..|.-.-+++.|-+++.++|
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dL-WI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDL-WIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchh-HHhhhhhHHhhccchHHHHHHHHHHh
Confidence            35678888888888888888887777777777888889999999999986542 22222344444445899999999999


Q ss_pred             Hhhchhh
Q 022442          127 RLIYQGE  133 (297)
Q Consensus       127 ~~~p~~~  133 (297)
                      +.+|...
T Consensus       168 R~npdsp  174 (568)
T KOG2396|consen  168 RFNPDSP  174 (568)
T ss_pred             hcCCCCh
Confidence            9887543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.72  E-value=3.4  Score=29.42  Aligned_cols=35  Identities=26%  Similarity=0.142  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh-------CCCcHH
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMI-------DPDANK  194 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-------~P~~~~  194 (297)
                      ..+...+.-+...|++.+|+.+|+++++.       .||++.
T Consensus         7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            34667788889999999999998887763       566653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.67  E-value=4  Score=22.72  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=23.1

Q ss_pred             CChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          173 TNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                      |+++.|..+|++++...|.++. |...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            5678889999999999998887 7765543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.41  E-value=14  Score=36.99  Aligned_cols=89  Identities=11%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC  112 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~  112 (297)
                      .+.-+++..++++|...+..-|.      .+....+|..+|..+.+.|.|.++++.+-+.+|...-....  ...+....
T Consensus       364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~--~~~~~~~E  441 (872)
T KOG4814|consen  364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL--MLQSFLAE  441 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH--HHHHHHHh
Confidence            34568899999999999986554      45567789999999999999999999999999874322222  22344677


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 022442          113 GKVEEQIEMLKRKLRLI  129 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~  129 (297)
                      |.-++|+.+........
T Consensus       442 ~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  442 DKSEEALTCLQKIKSSE  458 (872)
T ss_pred             cchHHHHHHHHHHHhhh
Confidence            99999999888876653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-04

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 27/178 (15%), Positives = 64/178 (35%), Gaps = 34/178 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
             + + A   F +A++        + ++ VV  Q    + A +    A++  + + ++ +
Sbjct: 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

Query: 98  QESLDNVLIDL---YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 154
            +  + +L +L    +K  K  E ++  ++ L L          P + A ++        
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---------IP-QNASTYS------- 274

Query: 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                     + + +    NF  A   +  A  +  D   +   LG C+      +EA
Sbjct: 275 ---------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 19/176 (10%), Positives = 49/176 (27%), Gaps = 20/176 (11%)

Query: 37  HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96
           H+  V+ + + A+  ++ A          +  + +     + S+ A         +  + 
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

Query: 97  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 156
               +  V + +  + G+ +   +     L  I                           
Sbjct: 193 P-FVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP------------- 237

Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
               LL NL     +   +  A   +++A ++ P        +G        +  A
Sbjct: 238 ----LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 36/171 (21%), Positives = 56/171 (32%), Gaps = 29/171 (16%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
             D EAA     +           L  ++ +  Q  R + +              + E+ 
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA-EAY 70

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161
            N L ++YK+ G+++E IE  +  LRL         KP      +               
Sbjct: 71  SN-LGNVYKERGQLQEAIEHYRHALRL---------KP-DFIDGYI-------------- 105

Query: 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
             NLA A +   +   A   Y  A   +PD      +LG  L    R  EA
Sbjct: 106 --NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 33/173 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 99
            +  + +      AI     +  A  ++  V K+  + +EAIE    +R     +    +
Sbjct: 46  CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH---YRHALRLKPDFID 102

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159
              N L       G +E  ++     L+           P                    
Sbjct: 103 GYIN-LAAALVAAGDMEGAVQAYVSALQY---------NP-DLYCVRS------------ 139

Query: 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
               +L            A+  Y KA    P+   A  NLG     +     A
Sbjct: 140 ----DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 34/177 (19%), Positives = 52/177 (29%), Gaps = 41/177 (23%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 95
               E A   + KAI        A  ++  V         AI        +         
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP------- 200

Query: 96  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155
              ++  N L ++ K+    +  +    R L L          P   A  HG        
Sbjct: 201 NFLDAYIN-LGNVLKEARIFDRAVAAYLRALSL---------SP-NHAVVHG-------- 241

Query: 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                   NLA  Y ++     A   Y++A  + P    A CNL   L ++    EA
Sbjct: 242 --------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 41/177 (23%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 95
           Q +   AI  F KA+        A  ++  V+K+    + A+ A      +         
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP------- 234

Query: 96  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155
                  N L  +Y + G ++  I+  +R + L         +P     ++         
Sbjct: 235 NHAVVHGN-LACVYYEQGLIDLAIDTYRRAIEL---------QP-HFPDAYC-------- 275

Query: 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                   NLA A  +K +   AE  Y  A  + P    +  NL     ++    EA
Sbjct: 276 --------NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 33/173 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 99
           +   + AI  +  A+           ++A  +      E A++A   +            
Sbjct: 80  RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA---YVSALQYNPDLYC 136

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159
              + L +L K  G++EE      + +           +P   A +              
Sbjct: 137 VRSD-LGNLLKALGRLEEAKACYLKAIET---------QP-NFAVAWS------------ 173

Query: 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
               NL   +  +     A   ++KA  +DP+   A  NLG  L +   ++ A
Sbjct: 174 ----NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
             D E A+  +  A+     +     D+  ++K L R EEA      AI+          
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-----TQPNF 168

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
             +  N L  ++   G++   I   ++ + L          P     ++           
Sbjct: 169 AVAWSN-LGCVFNAQGEIWLAIHHFEKAVTL---------DP-NFLDAYI---------- 207

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                 NL     +   F  A   Y +A  + P+      NL     ++   + A
Sbjct: 208 ------NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
            +  + A+  + +A++          ++A V  +    + AI+    AI+          
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHF 270

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
            ++  N L +  K+ G V E  +     LRL          P   A S            
Sbjct: 271 PDAYCN-LANALKEKGSVAEAEDCYNTALRL---------CP-THADSLN---------- 309

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                 NLA    ++ N   A  +Y+KA  + P+   A  NL   L ++ +  EA
Sbjct: 310 ------NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 37/168 (22%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           Q   + AI  + +AI        A  ++A  +K+     EA +    A++    LC   +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR----LCPTHA 305

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
            +SL+N L ++ ++ G +EE + + ++ L +          P + A +H           
Sbjct: 306 -DSLNN-LANIKREQGNIEEAVRLYRKALEV---------FP-EFAAAHS---------- 343

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK 204
                 NLA    Q+     A + Y++A  I P    A  N+G  L +
Sbjct: 344 ------NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 21/175 (12%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
            +D + A   F KA +           +A ++ +  +  E+          F        
Sbjct: 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-----PTL 377

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
            E       ++    G  +  I+      RL         +     + H     +  +  
Sbjct: 378 PEVPTF-FAEILTDRGDFDTAIKQYDIAKRL---------EE-VQEKIHVGIGPLIGKAT 426

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                 +     + +  F AA  +  KA  +DP + +A   L    ++  + +EA
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 38/179 (21%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLC 93
              ++ +   A VL  ++IN     + +   +A+ +   + S+E  +    A+     L 
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVD----LN 306

Query: 94  SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS 153
            +    +  +    +Y      +   E  ++   L          P +    +       
Sbjct: 307 PEYP-PTYYH-RGQMYFILQDYKNAKEDFQKAQSL---------NP-ENVYPYI------ 348

Query: 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                      LA    ++  F  +E  + + ++  P   +        L  R  ++ A
Sbjct: 349 ----------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 31/224 (13%), Positives = 57/224 (25%), Gaps = 54/224 (24%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------------- 87
             D E  I    KA+        AL   A   + L    +A+  +               
Sbjct: 72  TGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE 131

Query: 88  --SFRGLCSKQSQESLDNV------LIDLYKKCGKVEEQIEMLKRKLRL----------- 128
               R L  +  +   +N+         +      +     +    L +           
Sbjct: 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191

Query: 129 --IYQGEAFNGKPTKT------ARSHGKKFQ-------------VSVRQETSRLLGNLAW 167
                 +A     + T      A     K                 +R+  +  L     
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251

Query: 168 AYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEA 211
            +  K N + A+V+ Q++  + P  N    L L L  +    E 
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 30/171 (17%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
                + +          +    AL    +     +   +A   ++    +    +  S 
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSY 279

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161
              L          +E  +  ++ + L          P                 E    
Sbjct: 280 IF-LALTLADKENSQEFFKFFQKAVDL---------NP-----------------EYPPT 312

Query: 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
             +    Y    ++  A+  +QKAQ ++P+       L   L K+ ++ E+
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 17/184 (9%), Positives = 47/184 (25%), Gaps = 41/184 (22%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 88
           Q     +   F +       +       A ++      + AI+    A +          
Sbjct: 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416

Query: 89  FRGLC-SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG 147
             G    K +  +  +          K    I++L +   L          P ++ ++  
Sbjct: 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---------DP-RSEQAKI 466

Query: 148 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTR 207
                            LA   +Q      A  +++ + ++    ++         +  +
Sbjct: 467 ----------------GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ-ATTFAEAAK 509

Query: 208 YNEA 211
             + 
Sbjct: 510 IQKR 513

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-- 95
             L       A+  F  A++       A    A V   + +S+ A+          +K  
Sbjct: 12  KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVI 64

Query: 96  ----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 151
                   +       L  K GK++E  +  K+ L+           P         + Q
Sbjct: 65  ALKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKS---------NP-SEQEEKEAESQ 113

Query: 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNE 210
           +    E  RL  + A       ++ AA     K   +     +       C IK     +
Sbjct: 114 LVKADEMQRLR-SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRK 172

Query: 211 ARSVLEDVL 219
           A S L+   
Sbjct: 173 AISDLKAAS 181

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 35/187 (18%)

Query: 37  HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI---------- 86
              + + +P  AI     A         A   ++ +  QL   E ++  +          
Sbjct: 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 87  -KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145
            + F      +    L     +L +  G+  +     +  ++          +P      
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKT---------EP------ 265

Query: 146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK 204
                  SV + T R    +   + +    + A  +  +   ++PD   A  +     + 
Sbjct: 266 -------SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318

Query: 205 RTRYNEA 211
              Y+EA
Sbjct: 319 EEMYDEA 325

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLYGR 222
            L         +  A   Y    ++D +  +   +   C ++    + A S         
Sbjct: 57  GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116

Query: 223 IPGCEDGRTRKRAEELLLELESKQ 246
                      RA  +L  + +++
Sbjct: 117 AAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
            L +   Q   +  A+ ++Q   M+D    +    LG C      Y +A
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQA 71

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 36/184 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
           Q + E A+ L+ KA+       +A  ++A V++Q  + +EA+   K    +    +    
Sbjct: 22  QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK--EAIRISPTFADA 79

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161
            + + +  K+   V+  ++   R +++          P                   +  
Sbjct: 80  YSNMGNTLKEMQDVQGALQCYTRAIQI---------NP-----------------AFADA 113

Query: 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK-------RTRYNEARS 213
             NLA  +    N   A   Y+ A  + PD   A CNL  CL           R  +  S
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173

Query: 214 VLED 217
           ++ D
Sbjct: 174 IVAD 177

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-- 95
             L       A+  F  A++       A    A V   + +S+ A+          +K  
Sbjct: 35  KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVI 87

Query: 96  ----QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 151
                   +       L  K GK++E  +  K+ L+           P         + Q
Sbjct: 88  QLKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKS---------NP-SENEEKEAQSQ 136

Query: 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNE 210
           +    E  RL  + A       ++ AA     K   +     +       C IK     +
Sbjct: 137 LIKSDEMQRLR-SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRK 195

Query: 211 ARSVLEDVL 219
           A S L+   
Sbjct: 196 AISDLKAAS 204

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 37  HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96
              + + +P  AI     A    +    A   ++ +  QL   E ++  ++    L    
Sbjct: 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR--ECL---- 238

Query: 97  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG---EAFNGKPTKTARSHGKKFQVS 153
               LD      +    +V++  ++++    LI  G   +A +            K + S
Sbjct: 239 ---KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS------KYESVMKTEPS 289

Query: 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEAR 212
           + + T R    +   + +    + A  V  +   ++PD   A  +     +    Y+EA 
Sbjct: 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 349

Query: 213 SVLEDVL 219
              E   
Sbjct: 350 QDYETAQ 356

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 34/180 (18%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 100
            +D   A      A+ +  + + A    A + + L  +++A E+ +  + L  K  S E 
Sbjct: 21  GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR--QALSIKPDSAEI 78

Query: 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQG--EAFNGKPTKTARSHGKKFQVSVRQE 157
            +N    L  +  +  E +    + L    Y     A                       
Sbjct: 79  NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL--------------------- 117

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLE 216
                 N      ++  F  AE   +++    P    A   L    +   +  +A    +
Sbjct: 118 ------NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 38/175 (21%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           + + E AI     A+  G  + +  K ++    ++  +   +      I+        Q 
Sbjct: 51  KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE------YYQK 104

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
             +      D+  K    E++++  + +  +          P K A              
Sbjct: 105 SLTEHR-TADILTKLRNAEKELKKAEAEAYV---------NPEK-AEEA----------- 142

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                      Y  K+++  A   Y +     P+  +   N    L K   + EA
Sbjct: 143 -----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 51/338 (15%), Positives = 101/338 (29%), Gaps = 86/338 (25%)

Query: 8   KKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAI-VLFWKAINAGDR----- 61
           K I S ++ D  H+                  ++ KD  +    LFW  ++  +      
Sbjct: 43  KSILSKEEID--HI------------------IMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 62  VDSAL-KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV--EEQ 118
           V+  L  +   +M  +    E  +     R    ++ +   DN +   Y     V   + 
Sbjct: 83  VEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQP 136

Query: 119 IEMLKRKLR-------LIYQGEAFNGKPT---KTARSHGKK----FQV---SVRQETS-- 159
              L++ L        ++  G   +GK         S+  +    F++   +++   S  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVL 219
            +L  L     Q      +   +     +   + +A  L   L+K   Y     VL +V 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-EL-RRLLKSKPYENCLLVLLNVQ 254

Query: 220 YGRI-----PGCEDGR----TRKRAEELLLELESKQPPPDLSDLLGLNLEDEFVNGLEEM 270
             +        C   +    TR +     L   +          + L   DE    ++ +
Sbjct: 255 NAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDE----VKSL 306

Query: 271 VRVWAPSRSKRLP-------------IFEEISSFRDRI 295
           +  +   R + LP             I E I       
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 28/172 (16%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
             +   AI +F K               AV   +L + + A + I+++    +    +S 
Sbjct: 16  NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75

Query: 102 D-NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 160
           D      +  K G+    I+  +  +             T+                   
Sbjct: 76  DFEYYGKILMKKGQDSLAIQQYQAAVDR---------DTTR-----------------LD 109

Query: 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
           + G +   +  K NF  A    +K         K    LG        Y +A
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 23/192 (11%), Positives = 53/192 (27%), Gaps = 30/192 (15%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           +     AI  +  A++           +            AI+     I+      +   
Sbjct: 87  KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-----PTTTD 141

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAF----NGKPTKTARS 145
            +     L   Y    +  +      + L L        +++  A            A+ 
Sbjct: 142 PKVFYE-LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

Query: 146 HGKKF-------QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CN 197
           + +K            + E       +A+ Y    + + A+  ++    +DP   KA   
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260

Query: 198 LGLCLIKRTRYN 209
           L + L     ++
Sbjct: 261 LKMKLEHHHHHH 272

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 40/225 (17%)

Query: 32  YVRAKHAQLVQKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIEA 85
           Y +A  A    K  E A   + +      N      +A   +   +++K L R  EA++ 
Sbjct: 39  YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98

Query: 86  IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS 145
           I+                    +Y + G  +     L  +   + +        +K    
Sbjct: 99  IEK----------------ASVMYVENGTPDTAAMALD-RAGKLME----PLDLSKAVHL 137

Query: 146 HGKKFQVSV----RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-------ANK 194
           + +   V       ++ + L+G  +   +++  F  A    QK + +  +         K
Sbjct: 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197

Query: 195 ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL 239
                L  + R  Y  A+  + +     IPG          E+LL
Sbjct: 198 CIAQVLVQLHRADYVAAQKCVRE--SYSIPGFSGSEDCAALEDLL 240

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEARSVLEDVLYGR 222
            L         +  A   Y    ++D  +     +   CL++     EA S L       
Sbjct: 60  GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119

Query: 223 IPGCEDGRTRKRAEELLLELESKQ 246
               E      R   +L  ++ K+
Sbjct: 120 ANXPEFXELSTRVSSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
           +LA+   Q   +  A  V+Q   ++D   ++    LG C     +Y+ A
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 100
           + D   A++LF  A+    +   A + +     + ++   AI A++  R L  K  +Q +
Sbjct: 77  EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR--RCLELKPDNQTA 134

Query: 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 160
           L   L   +       +  E+L+  LR                    +    +    + R
Sbjct: 135 LMA-LAVSFTNESLQRQACEILRDWLRY-------TPAYAHLVTPAEEGAGGAGLGPSKR 186

Query: 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA---CNLGLCLIKRTRYNEA 211
           +LG+L    +  + F+  + ++  A  +DP +      C LG+       Y++A
Sbjct: 187 ILGSL----LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 40/189 (21%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------SFR 90
            Q   +    AI    + +       +AL  +AV         +A E ++       ++ 
Sbjct: 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166

Query: 91  GLCSKQSQESLDNVLIDLYK------KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT-A 143
            L +   + +    L    +            E  E+    +RL          PT    
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL---------DPTSIDP 217

Query: 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCL 202
                                L   +     +  A   +  A  + P+       LG  L
Sbjct: 218 DVQ----------------CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261

Query: 203 IKRTRYNEA 211
               +  EA
Sbjct: 262 ANGNQSEEA 270

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 31/216 (14%), Positives = 59/216 (27%), Gaps = 37/216 (17%)

Query: 39  QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ 98
           +      E A V F KA+    +       +A+   +LD    +  AI   R        
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207

Query: 99  ES-----LDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFN--GKPTKTA 143
                  L   L  + ++  +  E  ++++  L              + +    +P K A
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK-A 266

Query: 144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMA-------------------AEVVYQK 184
               KK  +      + L   +   Y  K   +                    A    +K
Sbjct: 267 IELLKK-ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325

Query: 185 AQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 219
           A   + +  +    L        +Y EA    +   
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 73  MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG 132
           M+  +  ++  + +       +++ + ++ N+L  L    G+ E  +E L++   LI Q 
Sbjct: 25  MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84

Query: 133 EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192
            A   +                   +    GN AW Y         ++   K + +    
Sbjct: 85  HADQAEI-----------------RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127

Query: 193 NKA---------CNLGLCLIK--RTRYNEARSVLEDVL 219
           +           C  G   +K    +   A+   E  L
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 27/204 (13%), Positives = 52/204 (25%), Gaps = 34/204 (16%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFR-GLCSKQSQE 99
               + AI    +AI            +A+ + ++    E   E  K     L       
Sbjct: 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRL-------------IY--QGEAFNGKPTKTAR 144
            +       Y++  + ++ IE+LK+ L                Y  +             
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307

Query: 145 SHGKKFQ------------VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192
              K  +                    R+   LA  +     +  AE  +QK    +   
Sbjct: 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

Query: 193 NKA----CNLG-LCLIKRTRYNEA 211
                     G   L +    ++A
Sbjct: 368 VAKQLLHLRYGNFQLYQMKCEDKA 391

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 5/155 (3%)

Query: 48  AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI-KSFRGLCSKQSQESLDNVLI 106
           A+    KA  A D +      +A +    D+ EEA     K F    +  +++ L     
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378

Query: 107 DLYKKCGKVEEQ-IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL 165
           +      K E++ I      +++    ++   +  K       K ++S     S  L  L
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL 436

Query: 166 AWAYMQKTNFMAAEVVYQKAQMIDPD-ANKACNLG 199
           A+          A+   ++         + +   G
Sbjct: 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 32/208 (15%), Positives = 68/208 (32%), Gaps = 32/208 (15%)

Query: 39  QLVQKDPEAAIVLFWKAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97
           Q +  + +   + +W  ++    + S L  ++A+  K+    ++A    K    L    +
Sbjct: 29  QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK--ELLQKAPN 86

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
                    ++    G+ ++ + M ++ L+L         +                   
Sbjct: 87  NVDCLEACAEMQVCRGQEKDALRMYEKILQL---------EADNL--------------A 123

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLE 216
            +  LGN    Y+             K          A    GL  +  TRY +AR+ L+
Sbjct: 124 ANIFLGNYY--YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181

Query: 217 DVLYGRI-PGCEDGRTRKRAEELLLELE 243
            V+     P  E  +T  +   +  E+ 
Sbjct: 182 KVI--LRFPSTEAQKTLDKILRIEKEVN 207

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 20/160 (12%), Positives = 38/160 (23%), Gaps = 29/160 (18%)

Query: 44  DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN 103
           D    ++    A+    +   A   +A     +  +     A++  RGL           
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQ--RGLALHPGHPEAVA 61

Query: 104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG 163
            L  +     +  E   +L++                                E   +  
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDA--------------------------APEHPGIAL 95

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCL 202
            L  A        AA   Y +A  + P+       L    
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLED 217
              +  LA  Y  K  F  A  +Y  A  +  +      + G C ++     +A+   E 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 218 VLYGRIPGCEDGRTRKRAEELLLELE 243
           V    I    D + + +A+  L  ++
Sbjct: 130 V----IQHSNDEKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNEA 211
           + A+ +  K     AEV ++   + D  + +    L      + ++ +A
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 22/176 (12%)

Query: 37  HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ 96
           H+  ++ + + AI  +  A             + +   QL     A E ++S   L    
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

Query: 97  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 156
               L+ + +  + K   ++  I   +  L L+ + ++       T              
Sbjct: 475 P-LLLNELGVVAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAAT-------------- 518

Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                  NL  AY +   + AA     +  ++  +       + L  + +     A
Sbjct: 519 -----WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 32/167 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK-SFRGLCSKQ 96
             +   A      +          L ++ VV       + AI     A+    +   +++
Sbjct: 454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

Query: 97  SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 156
              +    L   Y+K    +  I+ L + L L              A  H          
Sbjct: 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLL---------ST-NDANVHT--------- 554

Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCL 202
                   +A  Y+ K     A     ++  I P+   A   L   L
Sbjct: 555 -------AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 35/199 (17%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI----EAIKSFRGLCSKQS 97
           +      + +  K +                + +     +      + +         + 
Sbjct: 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-----PEK 372

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAF--NGKPTK------ 141
             +    +   Y    K+ E      +   +        I    +F   G+  +      
Sbjct: 373 AVTW-LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431

Query: 142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGL 200
           TA          + Q T      L   +MQ  N + A    Q +  +   D      LG+
Sbjct: 432 TA--------ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483

Query: 201 CLIKRTRYNEARSVLEDVL 219
               ++    A +  ++ L
Sbjct: 484 VAFNKSDMQTAINHFQNAL 502

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 219
            LA  +++  N   A  ++++    DPD      +LG    +  R ++A       +
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 41/186 (22%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           + + E A V   KA+        A   +AVV +     + A E    A+         ++
Sbjct: 50  RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-----SDSRN 104

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL-IYQG--EAFNGKPTKTARSHGKKFQVSV 154
              L+N       +  + EE  + L    +  +Y      F                   
Sbjct: 105 ARVLNN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE------------------ 145

Query: 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARS 213
                    NL    +Q      A+  ++K+  ++ +       +   L K   Y  AR 
Sbjct: 146 ---------NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 214 VLEDVL 219
             +   
Sbjct: 197 YYDLFA 202

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 34/174 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           + +P+ A   + KA+ +  R    L +    + +  R EEA +    A +        + 
Sbjct: 84  EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 143

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
            E+L  V + +     K  +  E  ++ LRL            +                
Sbjct: 144 FENLGLVSLQM----KKPAQAKEYFEKSLRL---------NRNQ-PSVAL---------- 179

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEA 211
                  +A    ++  ++ A   Y           ++  LG+ L K     + 
Sbjct: 180 ------EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 30/200 (15%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK---------- 87
            Q   +    AI+    A     +  +    +AV       +  A+ +++          
Sbjct: 64  TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123

Query: 88  ---SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFN 136
              S          +         +    +  E   +L   L +           G  +N
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183

Query: 137 --GKPTKTARSHGKKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA 192
                   A +     +  V +R + ++L   L            A   Y +A  I+P  
Sbjct: 184 LSNNYDSAAAN----LRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239

Query: 193 NKA-CNLGLCLIKRTRYNEA 211
            +   N+ +     ++Y+ A
Sbjct: 240 VRVMYNMAVSYSNMSQYDLA 259

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/172 (10%), Positives = 48/172 (27%), Gaps = 16/172 (9%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQES 100
             +   A + F     A    + A + + +   + ++   AI A+          +    
Sbjct: 34  LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN--HARMLDPKDIAV 91

Query: 101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR 160
               L   +         +  L+  L           +P +  +      Q         
Sbjct: 92  HAA-LAVSHTNEHNANAALASLRAWLLS---------QP-QYEQLGSVNLQAD-VDIDDL 139

Query: 161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
            + +  + +     +     +   A  ++P+  +   +LG+       Y+ A
Sbjct: 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLYGR 222
            L   Y +   F AA    + A   DP  + A   LG  L  +     AR   E  L   
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL--A 81

Query: 223 I-PGCEDGRTRKRAEELLLELESKQPPP 249
                 D +  K  +  L  L  +    
Sbjct: 82  AAQSRGDQQVVKELQVFLRRLAREDALE 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 219
           +L     +      A +    A+M+DP        L +        N A + L   L
Sbjct: 56  SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS-KQSQES 100
                 A VL  KA+     +  A   +  V  +      A          C  K S ++
Sbjct: 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175

Query: 101 LDNVLIDL-----YKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHG 147
           L  VL  L      +    V + +   K  +++           G A+      T ++  
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235

Query: 148 KKFQV-----------SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA- 195
              Q                    L  N A  +  + ++  A   + +A  +DP   +  
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295

Query: 196 CNLGLCLIKRTRYNEA 211
                 L   +R    
Sbjct: 296 QREQQLLEFLSRLTSL 311

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 219
            L   +     +  AE V        P+         + L    RY +   +L  ++
Sbjct: 32  GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 26/215 (12%)

Query: 2   EMGSNNKKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDR 61
           +   N   + +S+K   FH  +      G +      +L + D    I+    AI     
Sbjct: 39  QEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGL-KRLKEGDLPVTILFMEAAILQDPG 97

Query: 62  VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-QSQESLDNVLIDLYKKCGKVEEQIE 120
              A + + +   + +  + AI A++  R L  +  + ++L   L   Y      ++  E
Sbjct: 98  DAEAWQFLGITQAENENEQAAIVALQ--RCLELQPNNLKALMA-LAVSYTNTSHQQDACE 154

Query: 121 MLKRKLRLIYQ-GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE 179
            LK  ++   +       K                   +  L   ++ + +  +     +
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKG-----------------SPGLTRRMSKSPVDSSVLEGVK 197

Query: 180 VVYQKAQMIDPDANKA---CNLGLCLIKRTRYNEA 211
            +Y +A   + D         LG+       +N A
Sbjct: 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 23/178 (12%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97
            Q   ++ +AAIV   + +        AL  +AV        ++A EA+K    +     
Sbjct: 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK--NWIKQNPK 165

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQGEAFNGKPTKT-ARSHGKKFQVSV 154
            + L            ++ +          +   Y  EA +                   
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL-EAAHQNGDMIDPDLQT------- 217

Query: 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                     L   +     F  A   +  A  + P+       LG  L    R  EA
Sbjct: 218 ---------GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 46/201 (22%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRGLCSKQS 97
           + D       F KA+       S       +   L   ++A +    A +        ++
Sbjct: 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE-----LDPEN 337

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHGKK 149
                  L  L  +  K ++   +     R          +  E    K           
Sbjct: 338 IFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK---------ND 387

Query: 150 FQ---------VSVRQETSRLLGNLAWAYMQKT---------NFMAAEVVYQKAQMIDPD 191
           F          + +  +   +   +A    + T         NF+ A  + +KA  +DP 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 192 ANKA-CNLGLCLIKRTRYNEA 211
           + +A   L    +++   +EA
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEA 468

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 20/193 (10%), Positives = 51/193 (26%), Gaps = 15/193 (7%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97
            +   +  +A + +  +A         A+       + L+  +  +  +    GL  +Q 
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ- 207

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI-YQGEAFNGKPTKTARSHGKKFQ----- 151
             ++ +      +    V+  + +L +   L   Q  A         +   +  Q     
Sbjct: 208 VVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN--GGGKQALETVQRLLPV 264

Query: 152 ----VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRT 206
                 +  +    + + +              V  +A  + P    A  + G       
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 207 RYNEARSVLEDVL 219
                  VL    
Sbjct: 325 TVQRLLPVLCQAH 337

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 33/173 (19%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--E 99
            +  +  + +  +A     +   A+       + L+  +  +  +    GL  +Q     
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159
           S D     L      V+  + +L +   L          P                 E  
Sbjct: 349 SHDGGKQAL----ETVQRLLPVLCQAHGL---------TP-----------------EQV 378

Query: 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
             + +                V  +A  + P+   A  +              
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 14/175 (8%), Positives = 42/175 (24%), Gaps = 29/175 (16%)

Query: 38  AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS 97
            +   +  +  + +  +A     +   A+       + L+  +  +  +    GL + + 
Sbjct: 81  GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPEQ 139

Query: 98  QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE 157
             ++ +      +    V+  + +L +   L                            E
Sbjct: 140 VVAIAS-HDGGKQALETVQALLPVLCQAHGL--------------------------TPE 172

Query: 158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
               + +                V  +A  + P    A  + G            
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 32/190 (16%)

Query: 32  YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG 91
            + A       ++P+AA+    +  +        +     ++ +LDR + A + +K  + 
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQD 158

Query: 92  LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ 151
                +   L    + L     K+++   + +                            
Sbjct: 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------- 195

Query: 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANKACNLGLCLIKRTRYNE 210
                 T  LL   A  +M +  + AAE V Q+A   D        NL +      +  E
Sbjct: 196 ---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252

Query: 211 ARSVLEDVLY 220
             +     L 
Sbjct: 253 VTNRYLSQLK 262

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 43/183 (23%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 88
               +AA+ LF +A+    +   AL  +A    +L     A+E     +           
Sbjct: 18  LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77

Query: 89  FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK 148
                       L     D  +  G +E+ + +LK   R+          P + A  H  
Sbjct: 78  VLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERV---------NP-RYAPLHL- 122

Query: 149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRY 208
                               Y        AE   ++A  ++        L    +   R 
Sbjct: 123 ---------------QRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL 167

Query: 209 NEA 211
           +EA
Sbjct: 168 DEA 170

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 31/133 (23%)

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKR---KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ 156
           + +N L   Y K GK ++   + K    +      G             +G         
Sbjct: 171 TKNN-LASCYLKQGKYQDAETLYKEILTRAHEKEFGSV-----------NG--------- 209

Query: 157 ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PD-ANKACNLGLCLIKRTRYN 209
           +   +  +       K     +    +            P       +LG    ++ +  
Sbjct: 210 DNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLE 269

Query: 210 EARSVLEDVLYGR 222
            A ++ +     R
Sbjct: 270 AAHTLEDCASRNR 282

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 35/143 (24%)

Query: 100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS 159
           + +N L   Y K GK ++   + K  L   ++            R  G         E  
Sbjct: 197 TKNN-LASCYLKQGKFKQAETLYKEILTRAHE------------REFGSV-----DDENK 238

Query: 160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PD-ANKACNLGLCLIKRTRYNEAR 212
            +  +       K          +            P       NLG    ++ ++  A 
Sbjct: 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298

Query: 213 SVLEDVLYGRIPGCEDGRTRKRA 235
           ++ E  +          R+RK+ 
Sbjct: 299 TLEEAAM----------RSRKQG 311

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 59/186 (31%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIK---------S 88
             D E A   F KAI           + A ++  ++  E A+     A++          
Sbjct: 36  FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 89  FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI--YQGEAFNGKPTKTARSH 146
             G                 Y      +E  +M ++ LR      G+ F           
Sbjct: 96  GAGNV---------------YVVKEMYKEAKDMFEKALRAGMEN-GDLFY---------- 129

Query: 147 GKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKR 205
                             L    ++      A    Q+A  ++ +  +A    G+CL   
Sbjct: 130 -----------------MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172

Query: 206 TRYNEA 211
              +EA
Sbjct: 173 GMLDEA 178

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 37/195 (18%)

Query: 42  QKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AIKSFRG 91
           QK+   AI  + +A        D ++ A     +A     + ++  ++     A+  ++ 
Sbjct: 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN 173

Query: 92  LCSKQSQESL-DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKF 150
                 +      V+   Y      ++ +  L+  L L              A       
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL--------------AMDIQND- 218

Query: 151 QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA------CNLGLCLIK 204
                +  +  L N+A +Y +  +   A   +QKA  +  +            L   L K
Sbjct: 219 -----RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273

Query: 205 RTRYNEARSVLEDVL 219
             +  +A   +E+ L
Sbjct: 274 AGQTQKAFQFIEEGL 288

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 19/177 (10%), Positives = 41/177 (23%), Gaps = 41/177 (23%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA------IKSFRGLCSK 95
                 A++L  +  +A          + +   +    +   E                 
Sbjct: 21  AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP------- 73

Query: 96  QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVR 155
            + +     L   Y +  K +  + +L +              P                
Sbjct: 74  DNVKVATV-LGLTYVQVQKYDLAVPLLIKVAEA---------NP-INFNVRF-------- 114

Query: 156 QETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEA 211
                    L  A      F  A   ++ A  + P+  K    +     +  R+ EA
Sbjct: 115 --------RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 36/206 (17%), Positives = 65/206 (31%), Gaps = 39/206 (18%)

Query: 29  DGPYVRAKHAQLVQKDPEAAIVLFWKAIN----AGDRVD--SALKDMAVVMKQLDRSEEA 82
            G     K    V++    A+  + + +      GDR     A  ++      L   + A
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242

Query: 83  IE----AIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG 137
           IE     ++  R    + ++  +  N L + +   G+ E+  E  KR L L         
Sbjct: 243 IEHHQERLRIAREFGDRAAERRANSN-LGNSHIFLGQFEDAAEHYKRTLAL--------- 292

Query: 138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PD 191
                A   G+      R+  ++   +L   Y     F  A   + +   I         
Sbjct: 293 -----AVELGE------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341

Query: 192 ANKAC-NLGLCLIKRTRYNEARSVLE 216
             +AC +LG        +  A    E
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAE 367

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 22/196 (11%), Positives = 65/196 (33%), Gaps = 38/196 (19%)

Query: 42  QKDPEAAIVLFWKAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AIKSFRG 91
           Q++  +AI  F KA        DR++ A     M+     + ++  +++    A + ++ 
Sbjct: 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175

Query: 92  LCSKQSQE-SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKF 150
             +   +     ++    +    + E+ I   ++   +              A +  +  
Sbjct: 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--------------AEAEKQPQ 221

Query: 151 QVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-------CNLGLCLI 203
            +       R L N+      ++ +  A   +++A  +  ++N           +     
Sbjct: 222 LMG------RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275

Query: 204 KRTRYNEARSVLEDVL 219
           K  + ++A       +
Sbjct: 276 KLGKIDKAHEYHSKGM 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.94
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.92
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.86
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.85
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.84
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.83
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.82
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.81
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.76
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.74
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.73
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.73
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.7
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.69
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.69
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.68
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.67
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.64
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.6
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.54
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.53
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.53
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.49
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.47
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.46
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.46
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.45
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.42
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.36
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.3
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.28
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.18
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.18
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.13
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.07
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.86
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.81
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.81
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.59
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.54
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.51
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.5
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.45
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.32
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.1
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.06
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.5
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.39
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.26
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.26
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.12
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.37
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.62
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.59
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.56
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.38
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.34
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.9
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.85
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.54
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.49
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.06
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.35
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.11
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.9
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.22
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	87.91
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.26
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.7
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.11
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	83.28
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.14
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.18

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=2.7e-25  Score=190.33  Aligned_cols=168  Identities=19%  Similarity=0.147  Sum_probs=155.7

Q ss_pred             CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442           25 VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV  104 (297)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~  104 (297)
                      ||++..++...+.++...|++++|+..|+++++.+|+++.++.++|.++.++|++++|+..|+++++++|+++  .....
T Consensus         1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~   78 (217)
T 2pl2_A            1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMV   78 (217)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHH
Confidence            6888889999999999999999999999999999999999999999999999999999999999999999853  45566


Q ss_pred             HHHHHHHc-----------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442          105 LIDLYKKC-----------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       105 L~~ly~~~-----------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      +|.+|...           |++++|+..|++++++.                          |+++.++.++|.+|..+|
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g  132 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--------------------------PRYAPLHLQRGLVYALLG  132 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcC
Confidence            89999999           99999999999999985                          457789999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+.+|+++++++ +++. +.++|.+|..+|++++|+..|++++..
T Consensus       133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999 8888 999999999999999999999999997

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.94  E-value=1e-24  Score=180.26  Aligned_cols=168  Identities=18%  Similarity=0.164  Sum_probs=155.4

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      +...+.|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...|+..  .....+
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~   79 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL   79 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence            345567999999999999999999999999999999999999999999999999999999999999999853  455568


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.++...+++++|+..+++++++.                          |++..++..+|.+|..+|++++|+.+|+++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~  133 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALN--------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKT  133 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            999999999999999999999874                          456778999999999999999999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+++. +.++|.+|..+|++++|+..|+++++.
T Consensus       134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            999999998 999999999999999999999999997

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.93  E-value=9.8e-25  Score=218.45  Aligned_cols=171  Identities=18%  Similarity=0.212  Sum_probs=159.1

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442           23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD  102 (297)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~  102 (297)
                      .++|+...++..++.++...|++++|+.+|++|++++|+++.++.+||.+|.++|++++|++.|+++++++|+++  ..+
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~   80 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAY   80 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence            456777788999999999999999999999999999999999999999999999999999999999999999854  456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      +.||.+|..+|++++|++.|+++++++                          |+++.++++||.+|..+|++++|+.+|
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~--------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~  134 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQIN--------------------------PAFADAHSNLASIHKDSGNIPEAIASY  134 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            679999999999999999999999984                          467889999999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++|++++|+++. +.+||.+|..+|++++|+..++++++.
T Consensus       135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence            999999999998 999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.92  E-value=1.5e-24  Score=185.67  Aligned_cols=181  Identities=17%  Similarity=0.080  Sum_probs=148.5

Q ss_pred             ccccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----------C
Q 022442           10 IFSSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-----------D   77 (297)
Q Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-----------g   77 (297)
                      +...+....|....+ -|....+++.++.++...|++++|+..|+++++++|+++.++.++|.++..+           |
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g   98 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG   98 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            334455566755444 4777778999999999999999999999999999999999999999999999           9


Q ss_pred             ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC
Q 022442           78 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE  157 (297)
Q Consensus        78 ~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~  157 (297)
                      ++++|+..|+++++++|+++  .....+|.+|...|++++|+..|++++++.                           +
T Consensus        99 ~~~~A~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~  149 (217)
T 2pl2_A           99 YLEQALSVLKDAERVNPRYA--PLHLQRGLVYALLGERDKAEASLKQALALE---------------------------D  149 (217)
T ss_dssp             HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------C
T ss_pred             CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------------------------c
Confidence            99999999999999999854  455668999999999999999999999973                           2


Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      ++.++.++|.+|..+|++++|+..|+++++++|+++. +.++|.++..+|++++|+..|+++-
T Consensus       150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            5678999999999999999999999999999999998 9999999999999999999998864

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=8.6e-23  Score=187.64  Aligned_cols=196  Identities=15%  Similarity=0.114  Sum_probs=110.8

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442           23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD  102 (297)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~  102 (297)
                      ...|....++...+.++...|++++|+..|++++..+|++..++.++|.++...|++++|+..|++++..+|+..  ...
T Consensus        61 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~  138 (388)
T 1w3b_A           61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--CVR  138 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--HHH
T ss_pred             hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHH
Confidence            334544556666666666777777777777777777777777777777777777777777777777777777632  334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHHHCC
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      ..+|.++...|++++|+..|+++++..|... ++.. ........+      ..+.  +.++|++..++.++|.++...|
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~  217 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            4466677777777777777777777655321 1100 000000000      0011  2444555555555555555555


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++|+..|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus       218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            555555555555555555554 555555555555555555555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=1.9e-22  Score=172.31  Aligned_cols=188  Identities=11%  Similarity=0.068  Sum_probs=160.1

Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442           28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI  106 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~  106 (297)
                      ++..++..+..+...|++++|+..|++++..+| .+..+++++|.++..+|++++|+..|++++..+|++  ......+|
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL--ANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH--HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence            346788889999999999999999999999998 888999999999999999999999999999999984  35666799


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .+|..+|++++|+..|++++++.|....+.                   .....++.++|.++..+|++++|+.+|++++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIE-------------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHH-------------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence            999999999999999999999876321100                   0012579999999999999999999999999


Q ss_pred             HhCCC--cHH-HhHHHHHHHHcCCH---------------------------HHHHHHHHHHHhcCCCCCcchhhHHHHH
Q 022442          187 MIDPD--ANK-ACNLGLCLIKRTRY---------------------------NEARSVLEDVLYGRIPGCEDGRTRKRAE  236 (297)
Q Consensus       187 ~~~P~--~~~-~~nLg~~l~~~g~~---------------------------~eA~~~~~~al~~~~~~~~~~~~~~~a~  236 (297)
                      +++|+  ++. +.+||.+|..+|+.                           ++|+..|++++..   .|.+..    +.
T Consensus       145 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l---~p~~~~----~~  217 (228)
T 4i17_A          145 DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL---SPNRTE----IK  217 (228)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCHH----HH
T ss_pred             hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCHH----HH
Confidence            99999  888 99999999999988                           8899999999987   444433    45


Q ss_pred             HHHHHHH
Q 022442          237 ELLLELE  243 (297)
Q Consensus       237 ~~l~~~~  243 (297)
                      .++..+.
T Consensus       218 ~~l~~i~  224 (228)
T 4i17_A          218 QMQDQVK  224 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=1.2e-22  Score=186.78  Aligned_cols=259  Identities=19%  Similarity=0.162  Sum_probs=198.4

Q ss_pred             ccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           12 SSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        12 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ..+..+.|..+.+ .|....++...+.++...|++++|+..|+++++.+|+...++..+|.++..+|++++|++.|++++
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3445566644444 465566788889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc--CcchhHHhhhhh---hHH--HhcCCCcHHHH
Q 022442           91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN--GKPTKTARSHGK---KFQ--VSVRQETSRLL  162 (297)
Q Consensus        91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~--~~~~~~~~~~~~---~~~--~~l~p~~~~~l  162 (297)
                      ..+|++.  ..+..+|.+|...|++++|+..|++++++.|... ++.  +...........   .+.  +.+.|+++.++
T Consensus       163 ~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (388)
T 1w3b_A          163 ETQPNFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHCTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence            9999853  4556689999999999999999999999987532 111  100000000011   111  57789999999


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhh
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRT  231 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~  231 (297)
                      .++|.+|..+|++++|+.+|+++++++|+++. +.++|.++...|++++|+..|++++...+....          ....
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  320 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999998 999999999999999999999999987432221          2345


Q ss_pred             HHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442          232 RKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR  272 (297)
Q Consensus       232 ~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~  272 (297)
                      ++.|...+.......| .+.+...+|..+     +++..+.|+..+.
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5667777776654444 344555555544     3666666666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=3.1e-21  Score=175.57  Aligned_cols=192  Identities=16%  Similarity=0.103  Sum_probs=162.7

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ..+++..+..+...|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..|++++.++|++.  .....+|.+
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~  142 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALAVS  142 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence            335888899999999999999999999999999999999999999999999999999999999999853  456668999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc---------chhHHhhhhh------hHH--HhcCCC--cHHHHHHHHHH
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK---------PTKTARSHGK------KFQ--VSVRQE--TSRLLGNLAWA  168 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~-~~---------~~~~~~~~~~------~~~--~~l~p~--~~~~l~nLg~~  168 (297)
                      |...|++++|+..|++++++.|...... ..         ........++      .+.  +.+.|+  ++.++.++|.+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            9999999999999999999987532111 00         0011111111      111  577898  89999999999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      |..+|++++|+.+|+++++++|+++. +.++|.+|..+|++++|+..|++++...
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998 9999999999999999999999999973

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=2e-22  Score=187.84  Aligned_cols=166  Identities=11%  Similarity=0.001  Sum_probs=151.5

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~-~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      .++...+.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..|++++.++|++.  .+++.+|.+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence            3577778888899999999999999999999999999999999999997 9999999999999999854  456668999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      |..+|++++|+..|+++|+++                          |++..+|+++|+++..+|++++|+.+|++++++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld--------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD--------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            999999999999999999985                          467789999999999999999999999999999


Q ss_pred             CCCcHH-HhHHHHHHHH-cCCHHHH-----HHHHHHHHhcCC
Q 022442          189 DPDANK-ACNLGLCLIK-RTRYNEA-----RSVLEDVLYGRI  223 (297)
Q Consensus       189 ~P~~~~-~~nLg~~l~~-~g~~~eA-----~~~~~~al~~~~  223 (297)
                      +|++.. |+++|.+|.. .|++++|     +..|++++...+
T Consensus       230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P  271 (382)
T 2h6f_A          230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP  271 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred             CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence            999998 9999999999 5665888     589999998743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=7.8e-22  Score=179.57  Aligned_cols=209  Identities=19%  Similarity=0.142  Sum_probs=165.0

Q ss_pred             ccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           12 SSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      .......|. .+...|....++...+.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  160 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI  160 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            344555664 4444577777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcchHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhch--hh-hhcCcchhHHhhhh---h---hHH--
Q 022442           91 GLCSKQSQE--------SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG---K---KFQ--  151 (297)
Q Consensus        91 ~~~P~~~~~--------~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~--~~-~~~~~~~~~~~~~~---~---~~~--  151 (297)
                      .+.|+....        .+...+|.+|...|++++|+.+|++++++.|.  .. .+. .........+   .   .+.  
T Consensus       161 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~a  239 (365)
T 4eqf_A          161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-GLGVLFHLSGEFNRAIDAFNAA  239 (365)
T ss_dssp             HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH-HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence            999963211        11223588999999999999999999999875  22 111 0111111111   1   111  


Q ss_pred             HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus       240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5778999999999999999999999999999999999999998 999999999999999999999999987

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.88  E-value=2.3e-21  Score=180.64  Aligned_cols=181  Identities=10%  Similarity=-0.005  Sum_probs=160.1

Q ss_pred             ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442           12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF   89 (297)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a   89 (297)
                      ....-+.| +++...|....++...+.++...|+ +++|+.+|++++.++|++..+|+++|.++..+|++++|+..|+++
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34455566 4555557777788889999999996 999999999999999999999999999999999999999999999


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      +.++|++.  ..++.+|.++..+|++++|+..|+++|+++                          |++..+|+++|.+|
T Consensus       193 l~ldP~~~--~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------------------------P~~~~a~~~lg~~l  244 (382)
T 2h6f_A          193 LNQDAKNY--HAWQHRQWVIQEFKLWDNELQYVDQLLKED--------------------------VRNNSVWNQRYFVI  244 (382)
T ss_dssp             HHHCTTCH--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHH
T ss_pred             HHhCccCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHH
Confidence            99999854  455668999999999999999999999985                          46778999999999


Q ss_pred             HH-CCChHHH-----HHHHHHHHHhCCCcHH-HhHHHHHHHHcC--CHHHHHHHHHHHHhc
Q 022442          170 MQ-KTNFMAA-----EVVYQKAQMIDPDANK-ACNLGLCLIKRT--RYNEARSVLEDVLYG  221 (297)
Q Consensus       170 ~~-~g~~~eA-----~~~y~~Al~~~P~~~~-~~nLg~~l~~~g--~~~eA~~~~~~al~~  221 (297)
                      .. .|.+++|     +.+|++|+.++|++.. |+++|.+|..+|  ++++|+..++++ ..
T Consensus       245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~  304 (382)
T 2h6f_A          245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP  304 (382)
T ss_dssp             HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence            99 5665888     5999999999999998 999999999999  699999999987 54

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=1.1e-20  Score=161.19  Aligned_cols=168  Identities=14%  Similarity=0.116  Sum_probs=115.1

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |....++...+.++...|++++|+..|++++..+|....++..+|.++..+|++++|+..+++++..+|.+.  .....+
T Consensus        54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~  131 (243)
T 2q7f_A           54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG--DLFYML  131 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH--HHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            434444555555555556666666666666666666556666666666666666666666666666555432  233345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.+|...|++++|+..++++++.                          .|+++.++.++|.+|...|++++|+.+|+++
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  185 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVEL--------------------------NENDTEARFQFGMCLANEGMLDEALSQFAAV  185 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh--------------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55556666666666666665554                          3456678888999999999999999999999


Q ss_pred             HHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +..+|++.. +.++|.++..+|++++|+..+++++..
T Consensus       186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            999998887 888899999999999999999988886

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=2e-21  Score=165.13  Aligned_cols=164  Identities=16%  Similarity=0.117  Sum_probs=141.4

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHH----------------HHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      ......+..++..|++++|+.+|++++..+|+++.+++.                +|.++..+|++++|+..|+++++++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            345666777889999999999999999999999999999                9999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442           94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus        94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      |++.  .....+|.+|...|++++|+..|++++++.                          |+++.+++++|.+|..+|
T Consensus        85 p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           85 PNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLE--------------------------ADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             TTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHH
T ss_pred             CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHHh
Confidence            9854  456668999999999999999999999985                          467889999999997775


Q ss_pred             C--hHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 N--FMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~--~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +  ...++..|++++...|....++++|.++..+|++++|+..|++++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4  56778889888754443334788999999999999999999999997

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=1.2e-20  Score=164.63  Aligned_cols=187  Identities=17%  Similarity=0.085  Sum_probs=154.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESL  101 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l  101 (297)
                      |.....++..+..++..|++++|+..|++++..+|++   +.+++.+|.++..+|++++|+..|++++...|++. ....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            4455578888999999999999999999999999998   99999999999999999999999999999999632 2345


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442          102 DNVLIDLYKK--------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       102 ~~~L~~ly~~--------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      ...+|.+|..        .|++++|+..|+++++..|......     ..  .  .....+.+..+..++++|.+|..+|
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~a--~--~~~~~~~~~~~~~~~~la~~~~~~g  162 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-----DA--T--QKIRELRAKLARKQYEAARLYERRE  162 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-----HH--H--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-----HH--H--HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            6678999999        9999999999999999977432110     00  0  0001111223456799999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCc---HH-HhHHHHHHHHc----------CCHHHHHHHHHHHHhc
Q 022442          174 NFMAAEVVYQKAQMIDPDA---NK-ACNLGLCLIKR----------TRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~---~~-~~nLg~~l~~~----------g~~~eA~~~~~~al~~  221 (297)
                      ++++|+..|+++++..|++   +. ++++|.+|..+          |++++|+..|++++..
T Consensus       163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            9999999999999999984   45 88999999977          9999999999999997

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=1.1e-19  Score=164.61  Aligned_cols=190  Identities=15%  Similarity=0.098  Sum_probs=163.5

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      .+++..+..+...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+..|++++.++|++.  .....+|.+|
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~  142 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSF  142 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHH
Confidence            45788889999999999999999999999999999999999999999999999999999999999853  4566689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcC----------------cchhHHhhhhh------hHH--HhcCCC--cHHHHH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNG----------------KPTKTARSHGK------KFQ--VSVRQE--TSRLLG  163 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~----------------~~~~~~~~~~~------~~~--~~l~p~--~~~~l~  163 (297)
                      ...|++++|+..|++++++.|.......                ...... ..++      .+.  +.+.|+  .+.++.
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  221 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC  221 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            9999999999999999999875432211                111111 1111      111  577888  899999


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++|.+|...|++++|+.+|++++.++|+++. +.++|.++...|++++|+..|++++...
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998 9999999999999999999999999873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=4.4e-21  Score=183.14  Aligned_cols=167  Identities=16%  Similarity=0.067  Sum_probs=151.0

Q ss_pred             CCCCcHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDP-EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV  104 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~  104 (297)
                      |.....+...+.++...|++ ++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|++++.++|+ .  .....
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~  175 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQN  175 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHH
Confidence            33444677778888889999 99999999999999999999999999999999999999999999999998 2  45566


Q ss_pred             HHHHHHHc---------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC---
Q 022442          105 LIDLYKKC---------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK---  172 (297)
Q Consensus       105 L~~ly~~~---------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~---  172 (297)
                      +|.+|...         |++++|+..|++++++.                          |+++.++.++|.+|..+   
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~  229 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------------------------VLDGRSWYILGNAYLSLYFN  229 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHHHh
Confidence            89999999         99999999999999885                          45677999999999999   


Q ss_pred             -----CChHHHHHHHHHHHHhCC---CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          173 -----TNFMAAEVVYQKAQMIDP---DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       173 -----g~~~eA~~~y~~Al~~~P---~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                           |++++|+.+|++|++++|   +++. ++++|.+|..+|++++|+..|++++..
T Consensus       230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                 999999999999999999   8888 999999999999999999999999987

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=167.66  Aligned_cols=208  Identities=12%  Similarity=-0.006  Sum_probs=148.9

Q ss_pred             ccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHH
Q 022442           12 SSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSF   89 (297)
Q Consensus        12 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~a   89 (297)
                      .......| ..+...|.....+...+.++...|++++|+.+++++++.+|+++.++..+|.++...| ++++|+..|+++
T Consensus        38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  117 (330)
T 3hym_B           38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA  117 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33444555 3444456666666666677777888888888888888888888888888888888888 888888888888


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHH
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSR  160 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~  160 (297)
                      +..+|.+.  .....+|.+|...|++++|+..|++++++.|... .+.. ........+      ..+.  +.+.|+++.
T Consensus       118 ~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          118 TTLEKTYG--PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-IGLEYGLTNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             HTTCTTCT--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHhCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence            88888743  3445578888888888888888888888876421 1110 000000001      1111  466788888


Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC---------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMID---------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~---------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++.++|.+|..+|++++|+.+|++++++.         |.... +.++|.++..+|++++|+..+++++...
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            88888888888888888888888888876         55555 7788888888888888888888888763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=3e-20  Score=156.09  Aligned_cols=170  Identities=11%  Similarity=0.018  Sum_probs=152.1

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |.....+...+..+...|++++|+.+|+++++.+|+.+.++..+|.++...|++++|+..+++++...|.+.  .....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Confidence            334456777888899999999999999999999999999999999999999999999999999999999753  455668


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          106 IDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       106 ~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      |.+|... |++++|+..++++++ .|.                       .|+...++.++|.+|...|++++|+.+|++
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  138 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALA-DPT-----------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKR  138 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHT-STT-----------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHc-CcC-----------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999 999999999999998 220                       234567899999999999999999999999


Q ss_pred             HHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          185 AQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       185 Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++.+|++.. +.++|.++...|++++|+..+++++..
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999998 899999999999999999999999986

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.9e-20  Score=160.64  Aligned_cols=190  Identities=17%  Similarity=0.081  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--H---HHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNVL  105 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~---~~l~~~L  105 (297)
                      ++...+..+...|++++|+.+|++++..+ .++.++..+|.++..+|++++|+..+++++.+.|+..  .   ......+
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            45566667777777777777777777777 6677777777777777777777777777777766420  0   2345557


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------------------------hchhhhhcCcchhHHhhhh------hhHH--
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRL--------------------------IYQGEAFNGKPTKTARSHG------KKFQ--  151 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~--------------------------~p~~~~~~~~~~~~~~~~~------~~~~--  151 (297)
                      |.+|...|++++|+..|++++++                          .|................+      ..+.  
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            77777777777777777777773                          2221100000000000000      0111  


Q ss_pred             HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +.++|.++..+|++++|+..|++++..
T Consensus       166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            3556777788888888888888888888888888888888887 788888888888888888888888876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=2.9e-20  Score=166.53  Aligned_cols=184  Identities=14%  Similarity=0.030  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ++..+..++...++.++|+..+++.+..  +|+++.+++.+|.++.+.|++++|++.+++     |++.  .....+|.+
T Consensus        67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~~~l~~~  139 (291)
T 3mkr_A           67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECMAMTVQI  139 (291)
T ss_dssp             HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHHHHHHHH
Confidence            3444455666778899999999998875  599999999999999999999999999887     6532  456668899


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhc-Cc-chhHHh---hhhh---hHH--HhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFN-GK-PTKTAR---SHGK---KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAA  178 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~-~~-~~~~~~---~~~~---~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA  178 (297)
                      |.++|++++|+..|+++++..|...... .. ......   ....   .+.  +...|+++.+++++|.+|.++|++++|
T Consensus       140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999876432111 00 000100   0111   121  466899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH-HHHHHHHHHhc
Q 022442          179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG  221 (297)
Q Consensus       179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e-A~~~~~~al~~  221 (297)
                      +..|+++++++|+++. +.|+|.++..+|++++ +..++++++..
T Consensus       220 ~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            9999999999999998 9999999999999987 56888999987

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.5e-20  Score=158.28  Aligned_cols=158  Identities=18%  Similarity=0.128  Sum_probs=128.6

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh--------
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG--------  132 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~--------  132 (297)
                      ..++++..+|.++...|++++|+..|++++..+ .+.  .....+|.+|...|++++|+..+++++++.|..        
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence            456789999999999999999999999999998 533  456668999999999999999999999997743        


Q ss_pred             hhhc---------CcchhHHhhhhhhHH------------------------HhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          133 EAFN---------GKPTKTARSHGKKFQ------------------------VSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       133 ~~~~---------~~~~~~~~~~~~~~~------------------------~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ..+.         +..............                        +.+.|+.+.++.++|.+|...|++++|+
T Consensus        80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  159 (258)
T 3uq3_A           80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV  159 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence            1111         110000000000000                        2277888899999999999999999999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|+++++++|+++. +.++|.++..+|++++|+..+++++..
T Consensus       160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999998 999999999999999999999999987

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=4.7e-20  Score=163.86  Aligned_cols=252  Identities=12%  Similarity=0.044  Sum_probs=189.0

Q ss_pred             hhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           16 EDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      ...-..+...+.....+...+..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   88 (330)
T 3hym_B            9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS   88 (330)
T ss_dssp             -----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence            34446666777777788888888889999999999999999999999999999999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh---h---hHH--HhcCCCcHHHHHHH
Q 022442           96 QSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG---K---KFQ--VSVRQETSRLLGNL  165 (297)
Q Consensus        96 ~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~---~---~~~--~~l~p~~~~~l~nL  165 (297)
                      ++  .....+|.++...| ++++|+..|++++++.|... ++.. ........+   .   .+.  +.+.|++..++.++
T Consensus        89 ~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           89 NP--VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             ST--HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             CH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            54  45566899999999 99999999999999987432 1110 000100111   1   111  46778889999999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCCc---------
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI--------PGCE---------  227 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~--------~~~~---------  227 (297)
                      |.+|...|++++|+.+|+++++.+|+++. +.++|.++..+|++++|+..+++++...+        +...         
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999998 99999999999999999999999997521        1111         


Q ss_pred             --chhhHHHHHHHHHHHHhcC-CCCchhhhhcccc--hhHHHHHHHHH
Q 022442          228 --DGRTRKRAEELLLELESKQ-PPPDLSDLLGLNL--EDEFVNGLEEM  270 (297)
Q Consensus       228 --~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~--~d~~~~~~~~~  270 (297)
                        ....++.|...+....... ..+.+...+|..+  .+++.++....
T Consensus       246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence              2355667777777664433 3566677777766  24444444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=7e-20  Score=165.92  Aligned_cols=207  Identities=18%  Similarity=0.131  Sum_probs=167.3

Q ss_pred             cchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442           13 SKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG   91 (297)
Q Consensus        13 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~   91 (297)
                      .+....|..+.+ .|....++...+.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.
T Consensus        81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  160 (368)
T 1fch_A           81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR  160 (368)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444555644444 4666668888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcchHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhhch--hh-hhcCcchhHHhhhh---h---
Q 022442           92 LCSKQSQESLDN--------------VLIDLYKKCGKVEEQIEMLKRKLRLIYQ--GE-AFNGKPTKTARSHG---K---  148 (297)
Q Consensus        92 ~~P~~~~~~l~~--------------~L~~ly~~~g~~~eAi~~~~~al~~~p~--~~-~~~~~~~~~~~~~~---~---  148 (297)
                      ..|+........              .++.++ ..|++++|+..|++++++.|.  .. .+. .........+   .   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~  238 (368)
T 1fch_A          161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC-GLGVLFNLSGEYDKAVD  238 (368)
T ss_dssp             TSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH-HHHHHHHHTTCHHHHHH
T ss_pred             hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH-HHHHHHHHcCCHHHHHH
Confidence            999743211111              356666 899999999999999999876  22 111 0011111111   1   


Q ss_pred             hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          149 KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       149 ~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+.  +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.+|..+|++++|+..|++++..
T Consensus       239 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          239 CFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            111  5678999999999999999999999999999999999999998 999999999999999999999999986

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.4e-19  Score=162.05  Aligned_cols=257  Identities=15%  Similarity=0.122  Sum_probs=163.7

Q ss_pred             cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 022442           13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG   91 (297)
Q Consensus        13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~   91 (297)
                      .+..+.|. .+...|....++...+.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   99 (359)
T 3ieg_A           20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK   99 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            34445553 34444666667777777777888888888888888888888888888888888888888888888888888


Q ss_pred             hCC---cchHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH
Q 022442           92 LCS---KQSQESLDNVL------------IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF  150 (297)
Q Consensus        92 ~~P---~~~~~~l~~~L------------~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~  150 (297)
                      ..|   ++.  .....+            |.++...|++++|+..++++++..|................+      ..+
T Consensus       100 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  177 (359)
T 3ieg_A          100 SNPSEQEEK--EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL  177 (359)
T ss_dssp             SCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCcccChH--HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888   532  222223            677788888888888888888876643211100000000001      011


Q ss_pred             H--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh------------HHHHHHHHcCCHHHHHHHH
Q 022442          151 Q--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC------------NLGLCLIKRTRYNEARSVL  215 (297)
Q Consensus       151 ~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~------------nLg~~l~~~g~~~eA~~~~  215 (297)
                      .  +.+.|+++.++.++|.+|..+|++++|+..|+++++.+|++.. +.            .+|.++...|++++|+..+
T Consensus       178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  257 (359)
T 3ieg_A          178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY  257 (359)
T ss_dssp             HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            1  4567778888888888888888888888888888888887765 32            3477788888888888888


Q ss_pred             HHHHhcCCCCCc--------------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHH
Q 022442          216 EDVLYGRIPGCE--------------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMV  271 (297)
Q Consensus       216 ~~al~~~~~~~~--------------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l  271 (297)
                      ++++...+..+.              ....++.|...+.......| .+.+...+|..+     ++++.+.|+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  333 (359)
T 3ieg_A          258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ  333 (359)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888776322211              12334455555555543333 455555566655     244444444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.86  E-value=1.1e-21  Score=158.53  Aligned_cols=145  Identities=12%  Similarity=0.011  Sum_probs=126.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      +|.++...|++++|+..+++++..+|..+.+++.+|.+|.++|++++|+..|+++++++|+++  ..+..+|.+|...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCc
Confidence            455566678999999999999999999999999999999999999999999999999999854  466678999999999


Q ss_pred             HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH-HHHHHHhCCCcH
Q 022442          115 VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV-YQKAQMIDPDAN  193 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~-y~~Al~~~P~~~  193 (297)
                      +++|+..|++++++.                          |+++.++.++|.+|..+|++++|... +++|++++|+++
T Consensus        81 ~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A           81 TDKAVECYRRSVELN--------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            999999999999984                          46778999999999999999888776 489999999999


Q ss_pred             H-HhHHHHHHHHcCC
Q 022442          194 K-ACNLGLCLIKRTR  207 (297)
Q Consensus       194 ~-~~nLg~~l~~~g~  207 (297)
                      . +..++.++..+|+
T Consensus       135 ~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          135 AVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            8 6677888888875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=3.5e-20  Score=172.65  Aligned_cols=103  Identities=17%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |.....+...+..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++.  .....+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT--AARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH--HHHHHH
Confidence            333334445555555556666666666666655555555566666666666666666666666655555532  233345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      |.+|..+|++++|+..|++++++.|
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~  125 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNP  125 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            5555556666666666666555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=1.5e-20  Score=188.19  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=127.8

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      ..|++++++++||.++.++|++++|++.|+++++++|+++  ..++.||.+|.++|++++|+..|+++++++        
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--------   73 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRIS--------   73 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence            4689999999999999999999999999999999999854  466679999999999999999999999984        


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHH
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLE  216 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~  216 (297)
                                        |+++.++++||.+|.++|++++|+.+|++|++++|++.. +.+||.+|..+|++++|+..|+
T Consensus        74 ------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           74 ------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                              467889999999999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHhcC
Q 022442          217 DVLYGR  222 (297)
Q Consensus       217 ~al~~~  222 (297)
                      ++++..
T Consensus       136 ~Al~l~  141 (723)
T 4gyw_A          136 TALKLK  141 (723)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999983

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.86  E-value=1.4e-19  Score=155.87  Aligned_cols=166  Identities=20%  Similarity=0.171  Sum_probs=145.0

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ..+...+..+...|++++|+.+|++++..+|..+.++..+|.++...|++++|+..+++++...|.+.  .....+|.+|
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHH
Confidence            34667778888999999999999999999999999999999999999999999999999999999743  4566689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      ...|++++|+..|+++++ .+                       ..|..+.++.++|.+|..+|++++|+.+|+++++.+
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999988 11                       023455678889999999999999999999999999


Q ss_pred             CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |++.. +..+|.++..+|++++|+..+++++..
T Consensus       172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  204 (252)
T 2ho1_A          172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQG  204 (252)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            98887 888899999999999999999988876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.86  E-value=2.8e-19  Score=153.91  Aligned_cols=182  Identities=13%  Similarity=0.027  Sum_probs=160.7

Q ss_pred             ccchhhhhhhh-hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           12 SSKKEDLFHVI-HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ..+..+.|... ...|....++...+.++...|++++|+.+|+++++.+|....++..+|.++...|++++|+..+++++
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34455556443 34465666788888899999999999999999999999999999999999999999999999999999


Q ss_pred             h--hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442           91 G--LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus        91 ~--~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~  168 (297)
                      .  ..|..  ......+|.+|...|++++|+..|+++++..|                          +++.++..+|.+
T Consensus       133 ~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~  184 (252)
T 2ho1_A          133 QDTLYPER--SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--------------------------NQPSVALEMADL  184 (252)
T ss_dssp             TCTTCTTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------------CCHHHHHHHHHH
T ss_pred             hCccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--------------------------ccHHHHHHHHHH
Confidence            9  66763  34566689999999999999999999998743                          456789999999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |..+|++++|+.+|+++++..|++.. +..++.++...|++++|..++++++..
T Consensus       185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 889999999999999999999999987

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.85  E-value=1.5e-19  Score=160.38  Aligned_cols=192  Identities=16%  Similarity=0.132  Sum_probs=161.2

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ...++..+..+...|++++|+.+|++++..+|++..++..+|.++...|++++|+..+++++...|++.  .....+|.+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHHHHHHH
Confidence            345777888888999999999999999999999999999999999999999999999999999999753  455668999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcc--------------hh-HHhhhh---h---hHH--HhcCCCcHHHHHHH
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP--------------TK-TARSHG---K---KFQ--VSVRQETSRLLGNL  165 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~--------------~~-~~~~~~---~---~~~--~~l~p~~~~~l~nL  165 (297)
                      |...|++++|+..|+++++..|.........              .. .....+   .   .+.  +.+.|+++.++..+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  178 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL  178 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            9999999999999999999877432211000              00 000011   1   111  46789999999999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      |.+|...|++++|+.+|+++++.+|+++. +.++|.++...|++++|+..+++++...
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998 9999999999999999999999999873

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=2.3e-19  Score=160.70  Aligned_cols=188  Identities=15%  Similarity=0.130  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      ....+.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.+.  .....+|.+|..
T Consensus       123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~  200 (359)
T 3ieg_A          123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT--EAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence            334455566667777777777777777777777777777777777777777777777777766532  344446667777


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhh-hc--Ccc---------hhHHhhhh------hhHH--HhcCCCcH----HHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEA-FN--GKP---------TKTARSHG------KKFQ--VSVRQETS----RLLGNLAW  167 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~-~~--~~~---------~~~~~~~~------~~~~--~~l~p~~~----~~l~nLg~  167 (297)
                      .|++++|+..|+++++..|.... +.  ...         .......+      ..+.  +.+.|+++    .++.++|.
T Consensus       201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~  280 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH  280 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            77777777777777766553211 00  000         00000000      0011  34456655    35678999


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|..+|++++|+.+|+++++++|+++. +.++|.++...|++++|+..|++++..
T Consensus       281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999998 999999999999999999999999997

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.85  E-value=7.3e-21  Score=157.01  Aligned_cols=167  Identities=14%  Similarity=0.059  Sum_probs=141.7

Q ss_pred             CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHH
Q 022442           26 PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVL  105 (297)
Q Consensus        26 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L  105 (297)
                      |......+..+..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++...| ++.  +...+
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~--~~~~~   79 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS--YKSLI   79 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH--HHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH--HHHHH
Confidence            444556778888889999999999999999999999999999999999999999999999999999998 432  33333


Q ss_pred             HHH-HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          106 IDL-YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       106 ~~l-y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      +.+ +...+...+|+..|++++++.                          |+++.++.++|.+|..+|++++|+.+|++
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~--------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAAN--------------------------PDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            433 223344556899999999874                          46778999999999999999999999999


Q ss_pred             HHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          185 AQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       185 Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++++|+.  .. +.+||.++..+|+.++|+..|++++..
T Consensus       134 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          134 ILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             HHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            99999985  45 889999999999999999999999863

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.85  E-value=1.8e-20  Score=167.26  Aligned_cols=174  Identities=14%  Similarity=0.052  Sum_probs=154.5

Q ss_pred             hhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH
Q 022442           20 HVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ   98 (297)
Q Consensus        20 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~   98 (297)
                      ..+.. +|....+....+..++..|++++|+..|++++..+|+++.++..+|.++.++|++++|+..+++++..+|+.  
T Consensus       107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--  184 (287)
T 3qou_A          107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--  184 (287)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--
T ss_pred             HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--
Confidence            44433 366666788888889999999999999999999999999999999999999999999999999999999963  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442           99 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  178 (297)
Q Consensus        99 ~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA  178 (297)
                      ......++..+...|+.++|+..|+++++..                          |+++.++++||.+|...|++++|
T Consensus       185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------P~~~~~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------PEDAALATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHcccHHHH
Confidence            2344445666788999999999999999884                          46788999999999999999999


Q ss_pred             HHHHHHHHHhCCCc--HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          179 EVVYQKAQMIDPDA--NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       179 ~~~y~~Al~~~P~~--~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +..|+++++.+|++  .. +.+|+.++..+|+.++|...|++++..
T Consensus       239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          239 LELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999998  66 889999999999999999999998863

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=1.2e-19  Score=147.46  Aligned_cols=163  Identities=12%  Similarity=0.031  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      .+...+..+...|++++|+..|++++..+|..+.++..+|.++...|++++|+..+++++...|.+.  .....+|.+|.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence            4556677888999999999999999999999999999999999999999999999999999999743  45566899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      ..|++++|+..++++++..|                          +++.++.++|.+|...|++++|+.+|+++++..|
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP--------------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhcCHHHHHHHHHHHHhcCc--------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            99999999999999998743                          4567899999999999999999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++. +.++|.++..+|++++|...+++++..
T Consensus       142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            9998 999999999999999999999999986

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=2.1e-19  Score=167.39  Aligned_cols=262  Identities=15%  Similarity=0.112  Sum_probs=192.8

Q ss_pred             cccchhhhhhhhhc-CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442           11 FSSKKEDLFHVIHK-VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF   89 (297)
Q Consensus        11 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a   89 (297)
                      ........|..+.+ .|....++...+.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++
T Consensus        41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV  120 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33445566654444 56666678888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCcch---HHH--H--------HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhH
Q 022442           90 RGLCSKQS---QES--L--------DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKF  150 (297)
Q Consensus        90 l~~~P~~~---~~~--l--------~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~  150 (297)
                      +..+|++.   ...  +        ...+|.++...|++++|+..|++++++.|................+      ..+
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (450)
T 2y4t_A          121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL  200 (450)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999743   111  0        1224677999999999999999999987743211100000000011      111


Q ss_pred             H--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHH------------HHHHHHcCCHHHHHHHH
Q 022442          151 Q--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL------------GLCLIKRTRYNEARSVL  215 (297)
Q Consensus       151 ~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nL------------g~~l~~~g~~~eA~~~~  215 (297)
                      .  +.+.|+++.++.++|.+|...|++++|+.+|++++.++|++.. +..+            |.++...|++++|+..|
T Consensus       201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  280 (450)
T 2y4t_A          201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY  280 (450)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            1  4667899999999999999999999999999999999999987 6555            99999999999999999


Q ss_pred             HHHHhcCCCCCc--------------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442          216 EDVLYGRIPGCE--------------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR  272 (297)
Q Consensus       216 ~~al~~~~~~~~--------------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~  272 (297)
                      ++++...+.++.              ....++.|...+.......| .+.+...+|..+     +++..+.|+..+.
T Consensus       281 ~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999987332211              13445566666666543333 455555555555     3566666665554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.85  E-value=5.3e-20  Score=156.89  Aligned_cols=163  Identities=18%  Similarity=0.120  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      ++...+..+...|++++|+.+|+++++.+|....++..+|.++...|++++|+..+++++...|.+.  .....+|.+|.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHHHHH
Confidence            4666778888999999999999999999999999999999999999999999999999999999743  45666899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      ..|++++|+..|+++++..|                          +++.++.++|.+|..+|++++|+.+|++++++.|
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGM--------------------------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTC--------------------------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             HhccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            99999999999999998754                          4567899999999999999999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++.. +.++|.++...|++++|+..+++++..
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9998 999999999999999999999999987

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.84  E-value=9.2e-19  Score=146.97  Aligned_cols=181  Identities=11%  Similarity=-0.040  Sum_probs=158.4

Q ss_pred             cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CChHHHHHHHHHHH
Q 022442           13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-g~~~eAi~~~~~al   90 (297)
                      .+....|. .+...|....++...+.++...|++++|+.+|++++..+|+...++..+|.++... |++++|+..+++++
T Consensus        25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (225)
T 2vq2_A           25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL  104 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34445563 44455666667888889999999999999999999999999999999999999999 99999999999999


Q ss_pred             h--hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442           91 G--LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus        91 ~--~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~  168 (297)
                      .  ..|..  ......+|.+|...|++++|+..++++++..|                          +++.++.++|.+
T Consensus       105 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~  156 (225)
T 2vq2_A          105 ADPTYPTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--------------------------QFPPAFKELART  156 (225)
T ss_dssp             TSTTCSCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHH
T ss_pred             cCcCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------CCchHHHHHHHH
Confidence            9  44542  34566789999999999999999999998743                          456789999999


Q ss_pred             HHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |..+|++++|+.+|+++++.+| ++.. +..++.++...|++++|..+++.++..
T Consensus       157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            9999999999999999999999 8888 778889999999999999999999876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.83  E-value=4.4e-19  Score=171.22  Aligned_cols=207  Identities=13%  Similarity=0.054  Sum_probs=136.9

Q ss_pred             ccchhhhhhhhh-cCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           12 SSKKEDLFHVIH-KVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ..+..+.|..+. ..|....++...+.++...|++++|+..+++++..+|++..++..+|.+|.+.|++++|+..|++++
T Consensus       321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  400 (597)
T 2xpi_A          321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS  400 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344455564433 3355555666667777777777777777777777777777777777777777777777777777777


Q ss_pred             hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcHHH
Q 022442           91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETSRL  161 (297)
Q Consensus        91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~  161 (297)
                      ...|++.  ..++.++.+|.+.|++++|+..|+++++..|... .+.. ........+      ..+.  +.+.|+++.+
T Consensus       401 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  477 (597)
T 2xpi_A          401 TMDPQFG--PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF-LGMQHMQLGNILLANEYLQSSYALFQYDPLL  477 (597)
T ss_dssp             HHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            7777632  3445577777777777777777777777765432 1110 000000001      1111  3556777777


Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHh------CCCc-HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          162 LGNLAWAYMQKTNFMAAEVVYQKAQMI------DPDA-NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       162 l~nLg~~y~~~g~~~eA~~~y~~Al~~------~P~~-~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.++|.+|...|++++|+.+|++++++      +|++ .. +.++|.+|...|++++|+..+++++..
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            777777777777777777777777777      5654 44 677777777777777777777777765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=1.5e-19  Score=160.45  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=163.9

Q ss_pred             chhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      +....|. .+...|....++...+.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..
T Consensus        39 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  118 (327)
T 3cv0_A           39 EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS  118 (327)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445553 344456666678888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH
Q 022442           93 CSKQSQESLDNVL--------------ID-LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ  151 (297)
Q Consensus        93 ~P~~~~~~l~~~L--------------~~-ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~  151 (297)
                      .|....  ....+              +. ++...|++++|+..++++++..|................+      ..+.
T Consensus       119 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  196 (327)
T 3cv0_A          119 QPQYEQ--LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR  196 (327)
T ss_dssp             STTTTT--C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCccHH--HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            997422  22222              44 5788999999999999999987743211100000000011      1111


Q ss_pred             --HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          152 --VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       152 --~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                        +.+.|+++.++.++|.+|...|++++|+.+|+++++++|++.. +.++|.++..+|++++|+..+++++..
T Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  269 (327)
T 3cv0_A          197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence              4678999999999999999999999999999999999999998 999999999999999999999999987

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=1e-19  Score=142.90  Aligned_cols=121  Identities=12%  Similarity=0.059  Sum_probs=108.7

Q ss_pred             HHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh
Q 022442           54 KAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE  133 (297)
Q Consensus        54 ~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~  133 (297)
                      ++..++|+.++++.++|..+.++|++++|+..|+++++++|.++  .++..+|.+|..+|++++|+..|+++|++.    
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----   77 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLD----   77 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhh----
Confidence            34568999999999999999999999999999999999999854  456668999999999999999999999984    


Q ss_pred             hhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          134 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                                            |+++.++.++|.+|..+|++++|+..|+++++++|++.. +.+|+.|+
T Consensus        78 ----------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           78 ----------------------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             ----------------------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                                  457789999999999999999999999999999999998 88898875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=6.1e-20  Score=182.77  Aligned_cols=153  Identities=12%  Similarity=-0.074  Sum_probs=132.8

Q ss_pred             HHcCCHHHHHHHHHHHH--------HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      +..|++++|+..|++++        +.+|++.+++..+|.++.++|++++|++.|+++++.+|+++  ..++.+|.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW--RLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--HHHHHHHHHHHH
Confidence            67899999999999999        89999999999999999999999999999999999999854  456668999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      .|++++|+..|+++++++|                          +++.++.++|.+|.++|++++ +.+|++|++++|+
T Consensus       480 ~g~~~~A~~~~~~al~l~P--------------------------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFP--------------------------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHST--------------------------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            9999999999999999865                          455677788888888888888 8888888888888


Q ss_pred             cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          192 ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       192 ~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.. +++||.+|..+|++++|+..|++++..
T Consensus       533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          533 VISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            877 778888888888888888888887776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=5.2e-20  Score=175.69  Aligned_cols=180  Identities=13%  Similarity=0.069  Sum_probs=158.3

Q ss_pred             cchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------CChHHH
Q 022442           13 SKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---------DRSEEA   82 (297)
Q Consensus        13 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---------g~~~eA   82 (297)
                      ....+.|. .+..-|....++..++.++...|++++|+.+|+++++.+|+ ..++.++|.++..+         |++++|
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A  198 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDS  198 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHH
Confidence            44556664 44555766778999999999999999999999999999999 69999999999999         999999


Q ss_pred             HHHHHHHHhhCCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhc
Q 022442           83 IEAIKSFRGLCSKQSQESLDNVLIDLYKKC--------GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV  154 (297)
Q Consensus        83 i~~~~~al~~~P~~~~~~l~~~L~~ly~~~--------g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l  154 (297)
                      +..|++++.++|++.  ..+..+|.+|...        |++++|+..|++++++.|.                       
T Consensus       199 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------------  253 (474)
T 4abn_A          199 VRQAKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----------------------  253 (474)
T ss_dssp             HHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----------------------
T ss_pred             HHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----------------------
Confidence            999999999999854  4556689999999        9999999999999998541                       


Q ss_pred             CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      .++++.++.++|.+|..+|++++|+.+|+++++++|++.. +.+++.++..+|++++|+..+.++
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            0146789999999999999999999999999999999998 999999999999999999876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.83  E-value=9.6e-19  Score=168.83  Aligned_cols=263  Identities=11%  Similarity=0.021  Sum_probs=203.9

Q ss_pred             ccccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442            8 KKIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      +.+........|..+.+.|.+...+...+..+...|++++|+.+|++++..+|++..++..++.++.+.|++++|+..++
T Consensus       284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
T 2xpi_A          284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN  363 (597)
T ss_dssp             THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44455556667766666666666788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCc
Q 022442           88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQET  158 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~  158 (297)
                      +++...|++.  ...+.+|.+|.+.|++++|+.+|++++++.|... .++. ........+      ..+.  +.+.|++
T Consensus       364 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          364 DLVDRHPEKA--VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHHCTTSH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHhhCcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999743  4566689999999999999999999999877532 2221 001111111      1122  4678889


Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCCc-------
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI---PGCE-------  227 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~---~~~~-------  227 (297)
                      ..++.++|.+|...|++++|+.+|+++++++|+++. +.++|.+|...|++++|+..|++++...+   ..+.       
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            999999999999999999999999999999999998 99999999999999999999999987521   1121       


Q ss_pred             -------chhhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHhh
Q 022442          228 -------DGRTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVRV  273 (297)
Q Consensus       228 -------~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~~  273 (297)
                             ...+++.|...+..+....| ++.+...++..+     +++..+.|+..+..
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence                   24556778888777654444 455555555554     46777777776643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.83  E-value=7.1e-19  Score=152.84  Aligned_cols=165  Identities=16%  Similarity=0.083  Sum_probs=130.1

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--HHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--QESLDNVLID  107 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~~~l~~~L~~  107 (297)
                      ......+..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++. .|.+.  ....+..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            34566677788899999999999999999999999999999999999999999999999998 44321  1223566899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      +|...|++++|+..|++++++.|                          +++.++.++|.+|..+|++++|+.+|+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDT--------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHcccHHHHHHHHHHHHhcCc--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999999999999998854                          3445677777777777777777777777777


Q ss_pred             hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++|+++. +.++|......+++++|+..|++++..
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  171 (272)
T 3u4t_A          137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL  171 (272)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777776 777773334445777777777777776

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=8.9e-19  Score=166.51  Aligned_cols=230  Identities=14%  Similarity=0.092  Sum_probs=172.5

Q ss_pred             chhhhhhhhhcC-CCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHH
Q 022442           14 KKEDLFHVIHKV-PAGDG-------PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA   85 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~   85 (297)
                      +....|..+.+. |....       ++...+.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..
T Consensus       220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~  298 (537)
T 3fp2_A          220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKF  298 (537)
T ss_dssp             HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHH
Confidence            334455444444 43322       3666677888999999999999999999999 89999999999999999999999


Q ss_pred             HHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442           86 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL  165 (297)
Q Consensus        86 ~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL  165 (297)
                      |++++..+|+++  .....+|.+|...|++++|+..|++++++.|                          +++.++.++
T Consensus       299 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l  350 (537)
T 3fp2_A          299 FQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--------------------------ENVYPYIQL  350 (537)
T ss_dssp             HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCSHHHHHH
T ss_pred             HHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHH
Confidence            999999999853  4566689999999999999999999999854                          344577888


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc---c-------------
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE---D-------------  228 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~---~-------------  228 (297)
                      |.+|..+|++++|+.+|+++++.+|+++. +.++|.++...|++++|+..|++++...+..+.   .             
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~  430 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR  430 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888887 788888888888888888888888765221110   0             


Q ss_pred             h----------hhHHHHHHHHHHHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442          229 G----------RTRKRAEELLLELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR  272 (297)
Q Consensus       229 ~----------~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~  272 (297)
                      .          ..++.|...+.......| .+.+...+|..+     ++++.+.|+..+.
T Consensus       431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            1          556666666666544333 344455555544     2555555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.82  E-value=4.4e-19  Score=146.19  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=141.2

Q ss_pred             ccccccchhhhhh-hhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHH
Q 022442            8 KKIFSSKKEDLFH-VIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI   86 (297)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~   86 (297)
                      ++|.-.+..+.|. .+..-|....++...+.++...|++++|+..+++++..+|+.+.++..+|.++...+++++|+..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   96 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL   96 (184)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445556667774 455557777789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442           87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus        87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg  166 (297)
                      ++++...|.+.  .....+|.+|..+|++++|+..|++++++.                          |+++.++.++|
T Consensus        97 ~~a~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------------------------p~~~~~~~~lg  148 (184)
T 3vtx_A           97 QRAIALNTVYA--DAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------------------------PGFIRAYQSIG  148 (184)
T ss_dssp             HHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHH
T ss_pred             HHHHHhCccch--HHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------------------------chhhhHHHHHH
Confidence            99999999853  455668999999999999999999999985                          45778999999


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      .+|..+|++++|+.+|++|++++|+++.
T Consensus       149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          149 LAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999998764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=9.5e-19  Score=150.02  Aligned_cols=186  Identities=10%  Similarity=-0.037  Sum_probs=148.4

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH-HHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE-SLDNV  104 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~-~l~~~  104 (297)
                      ..+++..+..++..|++++|+..|++++...|+.   ..+++.+|.++..+|++++|+..|+++++.+|++... .....
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3457777888899999999999999999988875   5789999999999999999999999999999975321 23445


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442          105 LIDLYKK------------------CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus       105 L~~ly~~------------------~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg  166 (297)
                      +|.+|..                  .|++++|+..|+++++..|...........+         ..+..........+|
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l---------~~~~~~~~~~~~~~a  154 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYEYSVA  154 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            7777765                  6899999999999999987532110000000         001111234557899


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                      .+|..+|++++|+..|+++++..|+++   . +..+|.+|.++|++++|+..++++....+
T Consensus       155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence            999999999999999999999999986   4 78999999999999999999999988743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=5.3e-20  Score=148.59  Aligned_cols=132  Identities=11%  Similarity=0.063  Sum_probs=113.7

Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442           68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  147 (297)
Q Consensus        68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~  147 (297)
                      .||.++...|++++|++.+++++...|+.+  ..+..+|.+|.+.|++++|+..|+++++++                  
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------   61 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------   61 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence            489999999999999999999999988742  345568999999999999999999999984                  


Q ss_pred             hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHH-HHHHHhcCCCC
Q 022442          148 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSV-LEDVLYGRIPG  225 (297)
Q Consensus       148 ~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~-~~~al~~~~~~  225 (297)
                              |+++.++.++|.+|..+|++++|+.+|+++++++|+++. +++||.+|..+|++++|... +++++..   +
T Consensus        62 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~  130 (150)
T 4ga2_A           62 --------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F  130 (150)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred             --------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence                    467889999999999999999999999999999999998 99999999999999887766 5999998   4


Q ss_pred             Ccchh
Q 022442          226 CEDGR  230 (297)
Q Consensus       226 ~~~~~  230 (297)
                      |.++.
T Consensus       131 P~~~~  135 (150)
T 4ga2_A          131 PGSPA  135 (150)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            55444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.82  E-value=8e-19  Score=152.51  Aligned_cols=209  Identities=9%  Similarity=-0.026  Sum_probs=157.1

Q ss_pred             cccchhhhhhh-hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCh-HHHHHHHHHHHHHCCChHHHHHHH
Q 022442           11 FSSKKEDLFHV-IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVMKQLDRSEEAIEAI   86 (297)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~a~~~Lg~~l~~~g~~~eAi~~~   86 (297)
                      .-.+....|.. +...|....++...+.++...|++++|+..|++++...  |.. ..++..+|.++..+|++++|+..|
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   97 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY   97 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            33445566644 44456667789999999999999999999999999933  222 556999999999999999999999


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch-hHH--hhhh---hhHH--HhcCCCc
Q 022442           87 KSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT-KTA--RSHG---KKFQ--VSVRQET  158 (297)
Q Consensus        87 ~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~-~~~--~~~~---~~~~--~~l~p~~  158 (297)
                      ++++..+|.+.  .....+|.+|...|++++|+..|++++++.|.......... ...  ....   ..+.  +.+.|++
T Consensus        98 ~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A           98 QAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999854  45666899999999999999999999998764321100000 000  0000   1111  5677888


Q ss_pred             HHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhC---CCc-----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          159 SRLLGNLAWAYMQKTN---FMAAEVVYQKAQMID---PDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~---~~eA~~~y~~Al~~~---P~~-----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..++.++|.++..+|+   +++|+..|++++++.   |+.     .. +..||.+|..+|++++|+.+|++++..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8888888888888888   888888888888876   552     13 667888888888888888888888887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.81  E-value=7.2e-19  Score=150.00  Aligned_cols=168  Identities=11%  Similarity=0.001  Sum_probs=140.4

Q ss_pred             ccccchhhhhhhhhcC-C-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442           10 IFSSKKEDLFHVIHKV-P-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        10 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      +.-.+..+.|....++ | ++..+++..+.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  100 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLT  100 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3344556667544444 5 5556777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcchHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC--cHH
Q 022442           88 SFRGLCSKQSQE-----SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSR  160 (297)
Q Consensus        88 ~al~~~P~~~~~-----~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~  160 (297)
                      +++.+.|++...     ..+..+|.++...|++++|+..|++++++.|                          +  ++.
T Consensus       101 ~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~  154 (228)
T 4i17_A          101 EGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS--------------------------KKWKTD  154 (228)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC--------------------------HHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC--------------------------CcccHH
Confidence            999999985422     3466789999999999999999999999865                          3  345


Q ss_pred             HHHHHHHHHHHCCCh---------------------------HHHHHHHHHHHHhCCCcHH-HhHHHHHHH
Q 022442          161 LLGNLAWAYMQKTNF---------------------------MAAEVVYQKAQMIDPDANK-ACNLGLCLI  203 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~---------------------------~eA~~~y~~Al~~~P~~~~-~~nLg~~l~  203 (297)
                      ++.++|.+|..+|+.                           ++|+.+|+++++++|+++. ...|+.+..
T Consensus       155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            677777777777777                           9999999999999999998 667776643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=6.1e-18  Score=146.70  Aligned_cols=205  Identities=8%  Similarity=-0.078  Sum_probs=158.7

Q ss_pred             cchhhhhhhhhcC-C----CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442           13 SKKEDLFHVIHKV-P----AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        13 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      .+....|..+.+. +    ....++...+.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus        22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  101 (275)
T 1xnf_A           22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD  101 (275)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444556554444 2    2233577778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc---CcchhHHhhhhh---hHH--HhcCCCcH
Q 022442           88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN---GKPTKTARSHGK---KFQ--VSVRQETS  159 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~---~~~~~~~~~~~~---~~~--~~l~p~~~  159 (297)
                      +++.++|.+.  .....+|.+|...|++++|+..|++++++.|......   ...... .....   .+.  +...|++.
T Consensus       102 ~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~  178 (275)
T 1xnf_A          102 SVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVLKQHFEKSDKEQ  178 (275)
T ss_dssp             HHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHSCCCS
T ss_pred             HHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCcch
Confidence            9999999853  4566689999999999999999999999987543111   000000 00001   111  33445554


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+ .++.++...+++++|+..+++++...|+.    .. +.++|.++..+|++++|+..|++++..
T Consensus       179 ~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          179 WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            444 47888888999999999999999888754    45 789999999999999999999999997

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.81  E-value=7.9e-19  Score=152.33  Aligned_cols=153  Identities=14%  Similarity=0.015  Sum_probs=135.0

Q ss_pred             HcCCHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           41 VQKDPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      ..|++++|+..|+++++.    +|..+.++..+|.++...|++++|+..|++++..+|++.  .....+|.+|...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHccCHH
Confidence            358899999999999997    456788999999999999999999999999999999853  45666899999999999


Q ss_pred             HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-H
Q 022442          117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A  195 (297)
Q Consensus       117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~  195 (297)
                      +|+..|++++++.|                          +++.++.++|.+|..+|++++|+.+|+++++++|++.. .
T Consensus        95 ~A~~~~~~al~~~~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A           95 AAYEAFDSVLELDP--------------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHHHHCT--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhcCc--------------------------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence            99999999999854                          45678999999999999999999999999999999997 4


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          196 CNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       196 ~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ..++ ++...|++++|+..+++++...
T Consensus       149 ~~~~-~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A          149 LWLY-LAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence            4444 4467799999999999988763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.81  E-value=2.7e-18  Score=153.19  Aligned_cols=171  Identities=13%  Similarity=0.074  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h--HHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QES  100 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~--~~~  100 (297)
                      .|..++.++...|++++|+..|++++.+.+      ..+.++.++|.+|..+|++++|+..|++++.+.|..  .  ...
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            366677788899999999999999999742      236789999999999999999999999999988742  1  123


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          101 LDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       101 l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ..+.+|.+|... |++++|+.+|++++++.|...              ...      ....++.++|.+|..+|++++|+
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------------~~~------~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------SVA------LSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------CHH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------------ChH------HHHHHHHHHHHHHHHhCCHHHHH
Confidence            556689999996 999999999999999865210              000      01357899999999999999999


Q ss_pred             HHHHHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|++++++.|++..        +.++|.++..+|++++|+..|++++..
T Consensus       179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999998652        478999999999999999999999987

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.80  E-value=2.9e-18  Score=162.93  Aligned_cols=206  Identities=15%  Similarity=0.102  Sum_probs=136.2

Q ss_pred             chhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 022442           14 KKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC   93 (297)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~   93 (297)
                      +....|....+..+...++...+.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus       261 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  340 (537)
T 3fp2_A          261 DAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN  340 (537)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            33444433333322345566666666666777777777777777777777777777777777777777777777777777


Q ss_pred             CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhh------hHH--HhcCCCcH------
Q 022442           94 SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGK------KFQ--VSVRQETS------  159 (297)
Q Consensus        94 P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~------~~~--~~l~p~~~------  159 (297)
                      |++.  .....+|.+|...|++++|+..|+++++..|................++      .+.  +.+.|++.      
T Consensus       341 ~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  418 (537)
T 3fp2_A          341 PENV--YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI  418 (537)
T ss_dssp             TTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred             CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence            6543  2344466677777777777777777777655322110000000000000      010  12222222      


Q ss_pred             HHHHHHHHHHHHC----------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQK----------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~----------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+.++|.+|..+          |++++|+.+|+++++++|++.. +.++|.+|..+|++++|+..|++++..
T Consensus       419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            2467788999999          9999999999999999999998 999999999999999999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.80  E-value=1.2e-18  Score=168.99  Aligned_cols=154  Identities=12%  Similarity=0.006  Sum_probs=125.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM  121 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~  121 (297)
                      .|++++|+.+|+++++.+|++..++.++|.++..+|++++|++.|+++++++|++.  .....+|.+|..+|++++|+..
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999853  4566689999999999999999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHH
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGL  200 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~  200 (297)
                      |++++++.|                          +++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.
T Consensus        80 ~~~al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           80 LQQASDAAP--------------------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             HHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhcCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999854                          56779999999999999999999999999999999998 999999


Q ss_pred             HHHHc---CCHHHHHHHHHHHHhcCC
Q 022442          201 CLIKR---TRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       201 ~l~~~---g~~~eA~~~~~~al~~~~  223 (297)
                      ++..+   |++++|...|++++...+
T Consensus       134 ~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          134 WRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhccccHHHHHHHHHHHHhcCC
Confidence            99999   999999999999998743

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=4.5e-18  Score=152.19  Aligned_cols=179  Identities=11%  Similarity=0.055  Sum_probs=135.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHH
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~  110 (297)
                      ....+.++..|+++.|+..++.   .+|....++..++..+...|++++|++.+++++..  +|+++  .+...+|.+|.
T Consensus        38 ~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~  112 (291)
T 3mkr_A           38 VFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--TFLLMAASIYF  112 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHH
Confidence            3446778899999999998865   36667888999999999999999999999998875  58753  45667899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhh------hHH--HhcCCCcHHHHHHHH--HHHHHCCChHHHH
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGK------KFQ--VSVRQETSRLLGNLA--WAYMQKTNFMAAE  179 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~------~~~--~~l~p~~~~~l~nLg--~~y~~~g~~~eA~  179 (297)
                      ..|++++|+..|++     |.. .++.. ...+....++      .+.  +.+.|++..+....|  .++...|++++|+
T Consensus       113 ~~g~~~~Al~~l~~-----~~~~~~~~~-l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~  186 (291)
T 3mkr_A          113 YDQNPDAALRTLHQ-----GDSLECMAM-TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY  186 (291)
T ss_dssp             HTTCHHHHHHHHTT-----CCSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HCCCHHHHHHHHhC-----CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence            99999999999988     321 11110 0001011111      111  456787754433333  3334569999999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .+|+++++.+|+++. ++++|.++..+|++++|+..|++++...
T Consensus       187 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999998 8899999999999999999999999973

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.1e-18  Score=164.59  Aligned_cols=189  Identities=16%  Similarity=0.029  Sum_probs=145.8

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      .++...+.++...|++++|+.+|++++..+|. ..++..+|.++...|++++|+..+++++..+|.+.  .....+|.+|
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~  314 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHRGQMN  314 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHHHHHH
Confidence            35677788889999999999999999999999 99999999999999999999999999999999754  4566689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      ...|++++|+..|++++++.|................+      ..+.  +.+.|+++.++.++|.+|...|++++|+.+
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999987642111000000000000      0111  355677777788888888888888888888


Q ss_pred             HHHHHHhCCCcH-------HHhHHHHHHHH---cCCHHHHHHHHHHHHhc
Q 022442          182 YQKAQMIDPDAN-------KACNLGLCLIK---RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       182 y~~Al~~~P~~~-------~~~nLg~~l~~---~g~~~eA~~~~~~al~~  221 (297)
                      |++++.+.|+++       .+.++|.++..   .|++++|+..+++++..
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            888888777763       36677888887   78888888888887776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.80  E-value=4e-19  Score=144.39  Aligned_cols=126  Identities=15%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             HHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHH
Q 022442           85 AIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN  164 (297)
Q Consensus        85 ~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~n  164 (297)
                      .+++++.++|++.  ...+.+|.++.+.|++++|+..|++++.+.                          |+++.+|.+
T Consensus        24 ~l~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~~   75 (151)
T 3gyz_A           24 TLKDINAIPDDMM--DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIMG   75 (151)
T ss_dssp             CTGGGCCSCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHH
T ss_pred             CHHHHhCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHH
Confidence            3445566666532  334446677777777777777777777663                          345667777


Q ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                      ||.+|..+|++++|+.+|++|++++|+++. ++++|.+|..+|++++|+..|++++..   .++ ..-.++|..++..+
T Consensus        76 lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l---~~~-~~~~~~A~~ll~~l  150 (151)
T 3gyz_A           76 LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH---SND-EKLKIKAQSYLDAI  150 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHhh
Confidence            777777777777777777777777777776 777777777777777777777777775   222 22344555555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=9.7e-19  Score=174.12  Aligned_cols=168  Identities=10%  Similarity=-0.055  Sum_probs=143.8

Q ss_pred             hcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442           23 HKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD  102 (297)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~  102 (297)
                      ...|....++...+.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|++.|+++++++|+++  ..+
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~  504 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APK  504 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHH
Confidence            344777778888899999999999999999999999999999999999999999999999999999999999854  455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      +.+|.+|.++|++++ +..|+++++++                          |+++.+++++|.+|..+|++++|+..|
T Consensus       505 ~~lg~~~~~~g~~~~-~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          505 LALAATAELAGNTDE-HKFYQTVWSTN--------------------------DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HHHHHHHHHHTCCCT-TCHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCChHH-HHHHHHHHHhC--------------------------CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            668999999999999 99999999985                          457789999999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHcCCHHHH-HHHHHHHH
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVL  219 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA-~~~~~~al  219 (297)
                      ++|++++|++.. ++++|.++...|+.+++ ...+++++
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~  596 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA  596 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence            999999999998 99999999887774444 33343333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.6e-18  Score=159.18  Aligned_cols=190  Identities=15%  Similarity=0.108  Sum_probs=120.2

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL  108 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l  108 (297)
                      ..++...+.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+.  .....+|.+
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~  347 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI--FPYIQLACL  347 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHH
Confidence            334444455555555555566666655555555555555556666666666666666655555555432  233335555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhHH--HhcCCCcH------HHHHHHHHHHHH--
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKFQ--VSVRQETS------RLLGNLAWAYMQ--  171 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~~--~~l~p~~~------~~l~nLg~~y~~--  171 (297)
                      |...|++++|+..|+++++..|... .+.. ........+      ..+.  +.+.|+++      .++.++|.+|..  
T Consensus       348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  426 (514)
T 2gw1_A          348 AYRENKFDDCETLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP  426 (514)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred             HHHcCCHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence            5555666666666665555544211 1100 000000000      0000  22334443      389999999999  


Q ss_pred             -CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          172 -KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       172 -~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                       .|++++|+.+|++++.++|+++. +.++|.++..+|++++|+..|++++..
T Consensus       427 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence             99999999999999999999998 899999999999999999999999997

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=5.1e-19  Score=143.73  Aligned_cols=116  Identities=9%  Similarity=-0.020  Sum_probs=107.3

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      ..+++++.++|+++++++.+|.++.++|++++|+..|++++.++|+++  ..+..+|.+|..+|++++|+.+|++++++.
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            467888999999999999999999999999999999999999999854  455668999999999999999999999985


Q ss_pred             chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                                |+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus       101 --------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 --------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             --------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             --------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                                      46778999999999999999999999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=3.7e-18  Score=153.17  Aligned_cols=204  Identities=6%  Similarity=-0.026  Sum_probs=150.1

Q ss_pred             hhh-hhhhcCCCCCcHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChH
Q 022442           17 DLF-HVIHKVPAGDGPYVRAKHAQL-------VQKDP-------EAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSE   80 (297)
Q Consensus        17 ~~~-~~~~~~~~~~~~~~~~~~~~~-------~~g~~-------~~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~   80 (297)
                      ..| +.+...|..+..+...+.+..       ..|++       ++|+..|++|++ ++|++..+|..+|.++..+|+++
T Consensus        37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~  116 (308)
T 2ond_A           37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  116 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence            566 555556777777777777665       35886       899999999999 79999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-hcCcchhHH----hhh---hhhHH-
Q 022442           81 EAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FNGKPTKTA----RSH---GKKFQ-  151 (297)
Q Consensus        81 eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-~~~~~~~~~----~~~---~~~~~-  151 (297)
                      +|++.|++++++.|.+.. .++..+|.++.+.|++++|+.+|+++++..|.... +.+.. ...    ...   ...+. 
T Consensus       117 ~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a-~~~~~~~~~~~~A~~~~~~  194 (308)
T 2ond_A          117 KVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA-LMEYYCSKDKSVAFKIFEL  194 (308)
T ss_dssp             HHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH-HHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence            999999999999997542 25566889999999999999999999998663211 10000 000    000   01111 


Q ss_pred             -HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          152 -VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI---DPD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       152 -~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~---~P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                       +.+.|+++.++.++|.++..+|++++|+.+|++++..   .|+ ... |..++.++...|++++|..++++++...
T Consensus       195 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence             4556777777777777777777777777777777774   454 445 6677777777777777777777777763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=4.6e-18  Score=147.18  Aligned_cols=174  Identities=19%  Similarity=0.167  Sum_probs=142.7

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ   96 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~   96 (297)
                      .++...+.++...|++++|+.+|++++..        +|....++.++|.++..+|++++|+..|++++...     |++
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            35777888899999999999999999986        46678899999999999999999999999998873     211


Q ss_pred             -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442           97 -SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus        97 -~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~  175 (297)
                       ........+|.+|...|++++|+..|++++++....             .+     .-.|....++.++|.+|..+|++
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~-----~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR-------------LG-----PDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------SC-----TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cC-----CCCHHHHHHHHHHHHHHHHcCCH
Confidence             123456678999999999999999999999973100             00     00122456899999999999999


Q ss_pred             HHHHHHHHHHHHhC-------------------------------------------------CCcHH-HhHHHHHHHHc
Q 022442          176 MAAEVVYQKAQMID-------------------------------------------------PDANK-ACNLGLCLIKR  205 (297)
Q Consensus       176 ~eA~~~y~~Al~~~-------------------------------------------------P~~~~-~~nLg~~l~~~  205 (297)
                      ++|+.+|++++++.                                                 |+... +.+||.+|..+
T Consensus       186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  265 (283)
T 3edt_B          186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ  265 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999872                                                 33344 67899999999


Q ss_pred             CCHHHHHHHHHHHHhc
Q 022442          206 TRYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g~~~eA~~~~~~al~~  221 (297)
                      |++++|+.+|++++..
T Consensus       266 g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          266 GKLEAAHTLEDCASRN  281 (283)
T ss_dssp             TCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.78  E-value=2.5e-17  Score=144.15  Aligned_cols=157  Identities=13%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHH
Q 022442           29 DGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQES  100 (297)
Q Consensus        29 ~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~  100 (297)
                      ..+++.++.++..    .+++++|+.+|+++++.+  ++.+++++|.++..    .+++++|+..|++++..+..    .
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~  111 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA----E  111 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----H
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCc----c
Confidence            3344444444444    555555555555555443  34445555555555    55555555555555444211    2


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----C
Q 022442          101 LDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----K  172 (297)
Q Consensus       101 l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~  172 (297)
                      ....+|.+|..    .|++++|+..|+++++.                            +++.++.++|.+|..    .
T Consensus       112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~a~~~lg~~~~~~~~~~  163 (273)
T 1ouv_A          112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----------------------------NDGDGCTILGSLYDAGRGTP  163 (273)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----------------------------CcHHHHHHHHHHHHcCCCCC
Confidence            22334445554    55555555555555544                            344455555555555    5


Q ss_pred             CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          173 TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      +++++|+.+|+++++.  +++. +++||.+|..    .+++++|+.+|++++..
T Consensus       164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  215 (273)
T 1ouv_A          164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  215 (273)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence            5555555555555554  2333 5555555555    55555555555555553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=8.5e-17  Score=140.77  Aligned_cols=159  Identities=16%  Similarity=0.085  Sum_probs=142.3

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHHHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLD  102 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~l~  102 (297)
                      ....+++..+..+...|++++|+.+|+++++  |+++.+++++|.++..    .|++++|+..|++++..+..    ...
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~----~a~   77 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS----NGC   77 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----HHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCH----HHH
Confidence            3455788889999999999999999999999  7788999999999999    99999999999999988632    355


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCC
Q 022442          103 NVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTN  174 (297)
Q Consensus       103 ~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~  174 (297)
                      ..+|.+|..    .|++++|+..|+++++..                            ++.++.+||.+|..    .++
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------------------------~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----------------------------YAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHCSSSCCC
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------------------------CccHHHHHHHHHHcCCCcccC
Confidence            568999999    999999999999999862                            45689999999999    999


Q ss_pred             hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          175 FMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       175 ~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      +++|+.+|+++++.+  ++. +.+||.+|..    .+++++|+.+|++++..
T Consensus       130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            999999999999986  555 8899999999    99999999999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.2e-16  Score=149.95  Aligned_cols=194  Identities=14%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----   95 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----   95 (297)
                      .+.|..++.++...|++++|+..|++|+++         +|....++.++|.+|..+|++++|+..+++++.+.|.    
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            345777899999999999999999999975         6778889999999999999999999999999877542    


Q ss_pred             -c-hHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhhchhhhhc-C--cchhHHhhhh------hhH--HHhcCCCcHH
Q 022442           96 -Q-SQESLDNVLIDLYKK--CGKVEEQIEMLKRKLRLIYQGEAFN-G--KPTKTARSHG------KKF--QVSVRQETSR  160 (297)
Q Consensus        96 -~-~~~~l~~~L~~ly~~--~g~~~eAi~~~~~al~~~p~~~~~~-~--~~~~~~~~~~------~~~--~~~l~p~~~~  160 (297)
                       . ........+|..+..  .+++++|+.+|++++++.|...... +  .........+      ..+  .+.++|+++.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence             0 012334445655555  4579999999999999988543211 1  0000000000      111  1567888888


Q ss_pred             HHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          161 LLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       161 ~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++.++|.++..    .|++++|+.+|++++.++|++.. +.++|.+|...|++++|+..|++++...
T Consensus       211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  277 (472)
T 4g1t_A          211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI  277 (472)
T ss_dssp             HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            88888876654    46778888888888888888887 8888888888889888888888888763

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=1.8e-18  Score=139.46  Aligned_cols=119  Identities=14%  Similarity=-0.040  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442           48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR  127 (297)
Q Consensus        48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~  127 (297)
                      +-..|++++..+|++..+++.+|.++..+|++++|+..|++++..+|+++  ..+..+|.+|...|++++|+..|++++.
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33467777888888888888888888888888888888888888887643  3444577777778888888888877777


Q ss_pred             hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      +.|                          +++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        84 l~p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           84 MDI--------------------------XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             HST--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             cCC--------------------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            643                          45567777888888888888888888888877777664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.76  E-value=1.3e-17  Score=145.41  Aligned_cols=181  Identities=15%  Similarity=0.059  Sum_probs=147.3

Q ss_pred             cccccchhhhhh-hhhcCCCC---CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHH------
Q 022442            9 KIFSSKKEDLFH-VIHKVPAG---DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD---RVDSALKDMAVVMKQ------   75 (297)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~Lg~~l~~------   75 (297)
                      ++.-.+..+.|. ++...|.+   ..+++.++.++...|++++|+..|+++++..|   ..+.+++.+|.++..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            344455566774 44455666   55788899999999999999999999999877   457899999999999      


Q ss_pred             --CCChHHHHHHHHHHHhhCCcchHHH-HH--------------HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442           76 --LDRSEEAIEAIKSFRGLCSKQSQES-LD--------------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  138 (297)
Q Consensus        76 --~g~~~eAi~~~~~al~~~P~~~~~~-l~--------------~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~  138 (297)
                        +|++++|+..|++++..+|++.... ..              ..+|.+|...|++++|+..|+++++..|..      
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------  181 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT------  181 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS------
T ss_pred             ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC------
Confidence              9999999999999999999742211 11              557999999999999999999999986621      


Q ss_pred             chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC----------CChHHHHHHHHHHHHhCCCcHH----HhHHHHHHHH
Q 022442          139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK----------TNFMAAEVVYQKAQMIDPDANK----ACNLGLCLIK  204 (297)
Q Consensus       139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~----------g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~l~~  204 (297)
                                       +..+.++..+|.+|..+          |++++|+.+|+++++..|+++.    ...|+.++..
T Consensus       182 -----------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~  244 (261)
T 3qky_A          182 -----------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR  244 (261)
T ss_dssp             -----------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred             -----------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence                             12456899999999977          9999999999999999999963    4467888888


Q ss_pred             cCCHHHHH
Q 022442          205 RTRYNEAR  212 (297)
Q Consensus       205 ~g~~~eA~  212 (297)
                      +|+++++.
T Consensus       245 ~~~~~~~~  252 (261)
T 3qky_A          245 LTELEGDA  252 (261)
T ss_dssp             HHHHHTCT
T ss_pred             HHHhhhhh
Confidence            77776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.76  E-value=1.3e-17  Score=153.38  Aligned_cols=185  Identities=13%  Similarity=0.070  Sum_probs=149.1

Q ss_pred             hhhhhhhcCCCCCcHHHH------HHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChHHHHH
Q 022442           17 DLFHVIHKVPAGDGPYVR------AKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIE   84 (297)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~eAi~   84 (297)
                      +.+..+.+.|.....+..      .+..+...|++++|+.+|++++.+      .+..+.++.++|.++..+|++++|+.
T Consensus        85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~  164 (383)
T 3ulq_A           85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD  164 (383)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555433333333      677788999999999999999986      23356889999999999999999999


Q ss_pred             HHHHHHhhCCcc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcH
Q 022442           85 AIKSFRGLCSKQ-----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETS  159 (297)
Q Consensus        85 ~~~~al~~~P~~-----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~  159 (297)
                      .+++++.+.+..     ......+.+|.+|...|++++|+..|++++++.+..              +..      +..+
T Consensus       165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~------~~~~  224 (383)
T 3ulq_A          165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--------------KQP------QLMG  224 (383)
T ss_dssp             HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--------------CCh------HHHH
Confidence            999999875531     122455678999999999999999999999985421              000      0123


Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHH-----hC-CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQM-----ID-PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~-----~~-P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .++.++|.+|..+|++++|+.+|++|++     .+ |.... +.+||.++..+|++++|+.++++++..
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999     45 66766 889999999999999999999999975

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=2.9e-17  Score=144.51  Aligned_cols=173  Identities=23%  Similarity=0.307  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Cc-c
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SK-Q   96 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~-~   96 (297)
                      ++...+.++...|++++|+.+|+++++.        +|....++..+|.++...|++++|+..+++++.+.     ++ .
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            5777788889999999999999999994        67788999999999999999999999999998873     21 1


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      ........+|.+|...|++++|+..|++++++....             .+     .-.|....++.++|.+|..+|+++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~-----~~~~~~~~~~~~la~~~~~~~~~~  170 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-------------LG-----KDHPDVAKQLNNLALLCQNQGKYE  170 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-------------HC-----TTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------------cC-----CCChHHHHHHHHHHHHHHHcCCHH
Confidence            123456678999999999999999999999974100             00     001224568999999999999999


Q ss_pred             HHHHHHHHHHHh--------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          177 AAEVVYQKAQMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       177 eA~~~y~~Al~~--------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+.+|++++++        .|.... +.++|.+|..+|++++|+.++++++..
T Consensus       171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999998        666666 889999999999999999999999974

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.76  E-value=1.1e-18  Score=159.30  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=138.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-------------HHHHHHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDL  108 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-------------~~~l~~~L~~l  108 (297)
                      .+++++|+..|++++..+|..+.++.++|.++..+|++++|+..|++++.+.|.+.             ....++.+|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999742             02466679999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      |.++|++++|+..|++++++.|                          +++.+++++|.+|..+|++++|+.+|++|+++
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDS--------------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999854                          56789999999999999999999999999999


Q ss_pred             CCCcHH-HhHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 022442          189 DPDANK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG  221 (297)
Q Consensus       189 ~P~~~~-~~nLg~~l~~~g~~~eA-~~~~~~al~~  221 (297)
                      +|++.. +.+|+.++..+|++++| ...|++++..
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 99999999999999999 5577777753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=3.6e-17  Score=153.49  Aligned_cols=256  Identities=13%  Similarity=0.068  Sum_probs=167.0

Q ss_pred             chhhhhhhhhc-CCCCCcHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHH
Q 022442           14 KKEDLFHVIHK-VPAGDGPYVRAKHAQ---LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEA   85 (297)
Q Consensus        14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~   85 (297)
                      +..+.|..... -|..+.++...+.+.   -..++.++|+..|+++++++|+++.++.++|..+...    |++++|+..
T Consensus       156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~  235 (472)
T 4g1t_A          156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL  235 (472)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34556644333 455554554444442   2457778888888888888888888888888766554    577889999


Q ss_pred             HHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-hc--Ccch-------------------hHH
Q 022442           86 IKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FN--GKPT-------------------KTA  143 (297)
Q Consensus        86 ~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-~~--~~~~-------------------~~~  143 (297)
                      +++++..+|...  .....+|.+|...|++++|+..|++++++.|.... +.  +...                   ...
T Consensus       236 ~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~  313 (472)
T 4g1t_A          236 VEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL  313 (472)
T ss_dssp             HHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred             HHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            999999998743  45556899999999999999999999999875321 11  1000                   000


Q ss_pred             hhhhh---hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----HhHHHHH-HHHcCCHHHHHH
Q 022442          144 RSHGK---KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----ACNLGLC-LIKRTRYNEARS  213 (297)
Q Consensus       144 ~~~~~---~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----~~nLg~~-l~~~g~~~eA~~  213 (297)
                      .....   .+.  +.++|.+..++.++|.+|..+|++++|+.+|+++++++|++..    +.++|.+ +..+|++++|+.
T Consensus       314 ~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~  393 (472)
T 4g1t_A          314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH  393 (472)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            00000   111  4678999999999999999999999999999999999998763    3566654 457899999999


Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHHHHHHH-HhcCCCCchhhhhcccch-----hHHHHHHHHHH
Q 022442          214 VLEDVLYGRIPGCEDGRTRKRAEELLLEL-ESKQPPPDLSDLLGLNLE-----DEFVNGLEEMV  271 (297)
Q Consensus       214 ~~~~al~~~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~l  271 (297)
                      .|++++...+...........+..++... ...+..+.+...+|..+.     +++++.|+..+
T Consensus       394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999997332222233333344444333 333446777888888762     44555555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=1.3e-17  Score=134.37  Aligned_cols=133  Identities=16%  Similarity=0.063  Sum_probs=111.3

Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  163 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~  163 (297)
                      ..|++++.++|++.  ...+.+|.++...|++++|+..|++++.+.                          |+++.+++
T Consensus         8 ~~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~   59 (148)
T 2vgx_A            8 GTIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFFL   59 (148)
T ss_dssp             CSHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred             hhHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHHH
Confidence            45788899999743  455568999999999999999999999874                          45778999


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                      ++|.+|..+|++++|+.+|++++.++|+++. ++++|.+|..+|++++|+..|++++...+..+.......++..++..+
T Consensus        60 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 999999999999999999999999987443343344445666666665


Q ss_pred             Hh
Q 022442          243 ES  244 (297)
Q Consensus       243 ~~  244 (297)
                      ..
T Consensus       140 ~~  141 (148)
T 2vgx_A          140 KL  141 (148)
T ss_dssp             --
T ss_pred             Hh
Confidence            43

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=4e-17  Score=127.98  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHH
Q 022442           88 SFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAW  167 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~  167 (297)
                      ++..++|+.+  ..+..+|..|.+.|++++|+..|+++|++.                          |+++.++.++|.
T Consensus         4 r~a~inP~~a--~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~   55 (126)
T 4gco_A            4 RLAYINPELA--QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAA   55 (126)
T ss_dssp             ---CCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHH
T ss_pred             HHHHHCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhh
Confidence            3456788743  455668999999999999999999999985                          457789999999


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG  229 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~  229 (297)
                      +|..+|++++|+..|++|++++|+++. ++++|.+|..+|++++|+..|++++..   +|.+.
T Consensus        56 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l---~P~~~  115 (126)
T 4gco_A           56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV---DPSNE  115 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred             HHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcCCH
Confidence            999999999999999999999999998 999999999999999999999999998   45443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.75  E-value=7.3e-17  Score=148.36  Aligned_cols=171  Identities=16%  Similarity=0.050  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-----hHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAG------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQES  100 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-----~~~~  100 (297)
                      ++..|..+...|++++|+.+|++|+...      +..+.++.++|.++..+|++++|+..+++++.+.+..     ....
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            3445667788999999999999999862      2356789999999999999999999999999876531     1234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ..+.+|.+|...|++++|+..|++++++.+..              +..      +....++.+||.+|..+|++++|+.
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------------~~~------~~~~~~~~~lg~~y~~~~~~~~A~~  243 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------------QND------RFIAISLLNIANSYDRSGDDQMAVE  243 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------CCH------HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            45679999999999999999999999984310              000      0124589999999999999999999


Q ss_pred             HHHHHHH-----hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          181 VYQKAQM-----IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       181 ~y~~Al~-----~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      +|+++++     .+|.... +.+||.++..+|++++|+.++++++...
T Consensus       244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9999999     7788766 8899999999999999999999999863

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=5.3e-17  Score=137.65  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNV----------------LIDLYKKCGKVEEQIEMLKRK  125 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~----------------L~~ly~~~g~~~eAi~~~~~a  125 (297)
                      ..+.+...|..+...|++++|+..|++++..+|+++  ..+..                +|.+|...|++++|+..|+++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456788899999999999999999999999999843  34455                899999999999999999999


Q ss_pred             HHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442          126 LRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                      +++.                          |+++.++.++|.+|..+|++++|+.+|+++++++|+++. +++||.+|..
T Consensus        81 l~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           81 LQKA--------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9985                          467789999999999999999999999999999999998 9999999987


Q ss_pred             cCC--HHHHHHHHHHHHh
Q 022442          205 RTR--YNEARSVLEDVLY  220 (297)
Q Consensus       205 ~g~--~~eA~~~~~~al~  220 (297)
                      +|+  .+++...+++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~  152 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSS  152 (208)
T ss_dssp             HHHHHHHHHHHHHC---C
T ss_pred             HhHHHHHHHHHHHHHHhC
Confidence            764  4556677777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=3.2e-17  Score=144.26  Aligned_cols=174  Identities=20%  Similarity=0.196  Sum_probs=143.5

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ   96 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~   96 (297)
                      .++...+.++...|++++|+.+|++++..        +|....++..+|.++..+|++++|+..+++++.+.     ++.
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            35777788889999999999999999986        46678899999999999999999999999998874     221


Q ss_pred             -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442           97 -SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus        97 -~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~  175 (297)
                       ........+|.+|...|++++|+.+|++++++....             .+.     -.|....++.++|.+|..+|++
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~-----~~~~~~~~~~~la~~~~~~g~~  211 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK-------------LGP-----DDPNVAKTKNNLASCYLKQGKF  211 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-------------SCT-----TCHHHHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------------hCC-----CCHHHHHHHHHHHHHHHHcCCH
Confidence             123456678999999999999999999999973100             000     0122456889999999999999


Q ss_pred             HHHHHHHHHHHHh-------------------------------------------------CCCcHH-HhHHHHHHHHc
Q 022442          176 MAAEVVYQKAQMI-------------------------------------------------DPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       176 ~eA~~~y~~Al~~-------------------------------------------------~P~~~~-~~nLg~~l~~~  205 (297)
                      ++|+.+|++++++                                                 .|+... +.+||.+|..+
T Consensus       212 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~  291 (311)
T 3nf1_A          212 KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ  291 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC
Confidence            9999999999985                                                 355556 78999999999


Q ss_pred             CCHHHHHHHHHHHHhc
Q 022442          206 TRYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g~~~eA~~~~~~al~~  221 (297)
                      |++++|+.+|++++..
T Consensus       292 g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          292 GKFEAAETLEEAAMRS  307 (311)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.74  E-value=3.3e-17  Score=146.06  Aligned_cols=172  Identities=12%  Similarity=0.045  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCcch----HH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRGLCSKQS----QE   99 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~-g~~~eAi~~~~~al~~~P~~~----~~   99 (297)
                      ++..++.++...|++++|+.+|++|+.+.|..      ..++.++|.+|..+ |++++|+..|++++.+.|...    ..
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            57778888999999999999999999976643      56899999999996 999999999999999988521    12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ...+.+|.+|..+|++++|+..|++++++.|......                   .....++.++|.+|..+|++++|+
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ-------------------WSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG-------------------GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc-------------------HHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3456689999999999999999999999865321000                   001247899999999999999999


Q ss_pred             HHHHHHHHhCCCcHH------HhHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK------ACNLGLCLI--KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~------~~nLg~~l~--~~g~~~eA~~~~~~al~~  221 (297)
                      .+|+++++++|++..      +.+|+.++.  ..+++++|+..|++++..
T Consensus       220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence            999999999998764      235666664  457899999999888775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=4.5e-17  Score=140.92  Aligned_cols=164  Identities=24%  Similarity=0.323  Sum_probs=134.7

Q ss_pred             HHcCCHHHHHHHHHHHHHc--------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----Ccc-hHHHHHHHH
Q 022442           40 LVQKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC-----SKQ-SQESLDNVL  105 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~-----P~~-~~~~l~~~L  105 (297)
                      ...|++++|+.+|++++..        +|....++..+|.++..+|++++|+..+++++.+.     +++ ........+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3568888899999988882        36778899999999999999999999999998874     221 123456678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.+|...|++++|+..|++++.+....          .   +     .-.|....++.++|.+|..+|++++|+.+|+++
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~----------~---~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKV----------L---G-----KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHH----------H---C-----TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHH----------c---C-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999974200          0   0     001234568999999999999999999999999


Q ss_pred             HHh--------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMI--------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~--------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++        .|.... +.++|.++..+|++++|+.++++++..
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999        666666 889999999999999999999999975

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.73  E-value=1.1e-16  Score=143.74  Aligned_cols=168  Identities=15%  Similarity=0.204  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--c--hHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--Q--SQESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~--~~~~l  101 (297)
                      |..++.++...|++++|+..|++++.+.+.      ...++.++|.+|..+|++++|+..|++++.+.+.  +  .....
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  118 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA  118 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666677888899999999999999987543      3568999999999999999999999999987542  1  12244


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      ...+|.+|.. |++++|+.+|++++++.+..              +...      ....++.++|.+|..+|++++|+.+
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~  177 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------ERLR------QAAELIGKASRLLVRQQKFDEAAAS  177 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------CChh------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5668999988 99999999999999986521              0000      0235889999999999999999999


Q ss_pred             HHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          182 YQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       182 y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |++++++.|++.      . +.++|.++..+|++++|+..|++++ .
T Consensus       178 ~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          178 LQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence            999999876542      3 6789999999999999999999999 6

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.73  E-value=1.8e-17  Score=131.79  Aligned_cols=117  Identities=11%  Similarity=-0.017  Sum_probs=78.0

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           50 VLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        50 ~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      ..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++  ..+..+|.+|...|++++|+..|++++.+.
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            456666777777777777777777777777777777777777777643  334446677777777777777777777663


Q ss_pred             chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      |                          +++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        83 p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           83 I--------------------------NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             T--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             C--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            3                          44556677777777777777777777777777776664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.73  E-value=3.9e-17  Score=145.18  Aligned_cols=190  Identities=13%  Similarity=0.050  Sum_probs=152.4

Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442           28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID  107 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~  107 (297)
                      ....+...+..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|++.  ...+.+|.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence            4456777888899999999999999999999999999999999999999999999999999999999853  45667899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh-----hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG-----KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~-----~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      +|...|++++|+..|++++++.|......+..........     ........|..+.+...+|.++  .|++++|++.|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~  158 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC  158 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence            9999999999999999999998754211111000000000     1111234566677777887766  69999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKR-TRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~-g~~~eA~~~~~~al~~  221 (297)
                      +++++++|++.. ...++..+... +++++|..+|+++...
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999987 67777777766 7899999999998864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=5.8e-16  Score=138.76  Aligned_cols=173  Identities=14%  Similarity=0.034  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHH-------HCCCh-------HHHHHHHHHHHh-hCCcchHHHHHHHHHHHHH
Q 022442           46 EAAIVLFWKAINAGDRVDSALKDMAVVMK-------QLDRS-------EEAIEAIKSFRG-LCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~-------~~g~~-------~eAi~~~~~al~-~~P~~~~~~l~~~L~~ly~  110 (297)
                      ++|+..|++++..+|+++++|+++|.++.       ..|++       ++|+..|++++. ++|++.  .++..+|.++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            78999999999999999999999999987       46887       999999999999 789743  46666899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhh--hhcCcchhHHhhhh------hhHH--HhcCCCcHHHHHHHHHHHH-HCCChHHHH
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGE--AFNGKPTKTARSHG------KKFQ--VSVRQETSRLLGNLAWAYM-QKTNFMAAE  179 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~--~~~~~~~~~~~~~~------~~~~--~~l~p~~~~~l~nLg~~y~-~~g~~~eA~  179 (297)
                      ..|++++|+.+|++++++.|...  ++... .......+      ..+.  +.+.|....++...+.+.. .+|++++|+
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY-MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH-HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999877432  22211 01111111      1122  4566877777766665543 379999999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|+++++.+|+++. |.++|.++..+|++++|+.+|++++..
T Consensus       190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999999999998 999999999999999999999999985

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=9.5e-17  Score=127.62  Aligned_cols=132  Identities=14%  Similarity=0.078  Sum_probs=108.8

Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLG  163 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~  163 (297)
                      ..|++++.++|++.  .....+|.++...|++++|+..|++++.+.                          |+++.++.
T Consensus         5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~   56 (142)
T 2xcb_A            5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFL   56 (142)
T ss_dssp             ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHH
T ss_pred             hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHH
Confidence            46777888888743  445568999999999999999999999874                          45778999


Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       164 nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                      ++|.+|..+|++++|+.+|++++.++|+++. ++++|.+|..+|++++|+..|++++...+.++.......++...+..+
T Consensus        57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 999999999999999999999999987443444444455666666665


Q ss_pred             H
Q 022442          243 E  243 (297)
Q Consensus       243 ~  243 (297)
                      .
T Consensus       137 ~  137 (142)
T 2xcb_A          137 T  137 (142)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.71  E-value=3.5e-16  Score=126.78  Aligned_cols=153  Identities=13%  Similarity=0.095  Sum_probs=132.5

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      +....|..+.+. |....++...+.++...|++++|+.+++++++.+|..+.++..+|.++...|++++|+..+++++..
T Consensus        26 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            334445433333 5555577788888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      .|.+.  .....+|.+|...|++++|+..++++++..|                          +++.++.++|.+|..+
T Consensus       106 ~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~  157 (186)
T 3as5_A          106 NPINF--NVRFRLGVALDNLGRFDEAIDSFKIALGLRP--------------------------NEGKVHRAIAFSYEQM  157 (186)
T ss_dssp             CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHT
T ss_pred             CcHhH--HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--------------------------cchHHHHHHHHHHHHc
Confidence            99753  4556689999999999999999999998743                          4567899999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCcHH
Q 022442          173 TNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      |++++|+.+|+++++++|++..
T Consensus       158 ~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          158 GRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             TCHHHHHHHHHHHHHHHHCCCG
T ss_pred             CCHHHHHHHHHHHHHcCCCchh
Confidence            9999999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=1.2e-15  Score=116.80  Aligned_cols=129  Identities=26%  Similarity=0.265  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  144 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~  144 (297)
                      +++.+|.++...|++++|+..+++++...|.+.  .....++.++...|++++|+..+++++...|              
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--------------
Confidence            455666666666666666666666666666532  2333456666666666666666666665532              


Q ss_pred             hhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          145 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                                  +++.++.++|.++...|++++|+.+|++++...|++.. +..+|.++...|++++|...+++++..
T Consensus        67 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 ------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             ------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence                        23445666666666666666666666666666666665 666666666666666666666666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.70  E-value=6.6e-16  Score=137.54  Aligned_cols=135  Identities=15%  Similarity=0.057  Sum_probs=123.2

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  138 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~  138 (297)
                      -|...++++.+|..+.+.|++++|+..|++++..+|++.  .....||.+|...|++++|+..|++++...|        
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--------  182 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--------  182 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--------
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--------
Confidence            389999999999999999999999999999999999854  4566689999999999999999999888754        


Q ss_pred             chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                                        +......+++..+.+.++.++|+..|+++++.+|+++. +++||.+|...|++++|+..|++
T Consensus       183 ------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~  244 (287)
T 3qou_A          183 ------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG  244 (287)
T ss_dssp             ------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                              33345677888899999999999999999999999999 99999999999999999999999


Q ss_pred             HHhc
Q 022442          218 VLYG  221 (297)
Q Consensus       218 al~~  221 (297)
                      ++..
T Consensus       245 ~l~~  248 (287)
T 3qou_A          245 HLRX  248 (287)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9997

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.70  E-value=1.5e-15  Score=116.25  Aligned_cols=134  Identities=25%  Similarity=0.261  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      ++...+.++...|++++|+.+++++++.+|....++..+|.++...|++++|+..+++++...|...  .....+|.++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHH
Confidence            5667788888999999999999999999999999999999999999999999999999999999743  35566899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      ..|++++|+..++++++..|                          ++..++..+|.+|...|++++|+.+|++++..+|
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP--------------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            99999999999999998743                          4567999999999999999999999999999999


Q ss_pred             Cc
Q 022442          191 DA  192 (297)
Q Consensus       191 ~~  192 (297)
                      ++
T Consensus       135 ~~  136 (136)
T 2fo7_A          135 RS  136 (136)
T ss_dssp             TC
T ss_pred             CC
Confidence            74

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.70  E-value=2.1e-15  Score=128.25  Aligned_cols=172  Identities=13%  Similarity=0.034  Sum_probs=144.3

Q ss_pred             hhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----ChHHHHHHHHHHHhh
Q 022442           17 DLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD----RSEEAIEAIKSFRGL   92 (297)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g----~~~eAi~~~~~al~~   92 (297)
                      ..|....+. ....+.+.++.++...+++++|+.+|++++..  +++.++++||.+|.. +    ++++|+..|+++...
T Consensus         7 ~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~   82 (212)
T 3rjv_A            7 SQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA   82 (212)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence            345444544 45668889999999999999999999999885  578999999999998 7    999999999999765


Q ss_pred             CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442           93 CSKQSQESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~  168 (297)
                      ...    ...+.||.+|..    .+++++|+..|+++++..+..                        +++.++++||.+
T Consensus        83 g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~  134 (212)
T 3rjv_A           83 GSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLI  134 (212)
T ss_dssp             TCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHH
T ss_pred             CCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHH
Confidence            432    345568989988    899999999999999874300                        125789999999


Q ss_pred             HHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc-C-----CHHHHHHHHHHHHhc
Q 022442          169 YMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR-T-----RYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~-g-----~~~eA~~~~~~al~~  221 (297)
                      |..    .+++++|+.+|++|+++ |.++. .++||.+|... |     ++++|+.+|+++++.
T Consensus       135 y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          135 YASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            999    89999999999999999 66676 99999999865 3     899999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=9.3e-16  Score=118.69  Aligned_cols=117  Identities=10%  Similarity=-0.080  Sum_probs=96.8

Q ss_pred             CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      |..+..+..+|..+...|++++|+..|++++.++|+++  ..+..+|.+|...|++++|+..|++++++.|         
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------   69 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDP---------   69 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------
Confidence            44567788899999999999999999999999998753  4556688889999999999999999888743         


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------CCcHH-HhHHHHHHHH
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID------PDANK-ACNLGLCLIK  204 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~------P~~~~-~~nLg~~l~~  204 (297)
                                       +++.++.++|.+|..+|++++|+.+|+++++++      |++.. +..|+.+..+
T Consensus        70 -----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           70 -----------------NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             -----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             -----------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence                             566788899999999999999999999999998      88877 6777776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.69  E-value=1.1e-15  Score=148.09  Aligned_cols=158  Identities=13%  Similarity=0.047  Sum_probs=133.0

Q ss_pred             chhhhhhhhh-cCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           14 KKEDLFHVIH-KVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        14 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      +..+.|.... ..|....++..++.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.|++++++
T Consensus         7 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   86 (568)
T 2vsy_A            7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA   86 (568)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3445554433 446666688888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      +|++.  .....+|.+|...|++++|+..|++++++.|                          +++.++.++|.+|..+
T Consensus        87 ~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           87 APEHP--GIALWLGHALEDAGQAEAAAAAYTRAHQLLP--------------------------EEPYITAQLLNWRRRL  138 (568)
T ss_dssp             CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHT
T ss_pred             CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHh
Confidence            99853  4566689999999999999999999999854                          5677899999999999


Q ss_pred             ---CChHHHHHHHHHHHHhCCCcHH-HhHHH
Q 022442          173 ---TNFMAAEVVYQKAQMIDPDANK-ACNLG  199 (297)
Q Consensus       173 ---g~~~eA~~~y~~Al~~~P~~~~-~~nLg  199 (297)
                         |++++|+..|+++++.+|++.. +..|+
T Consensus       139 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          139 CDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             TCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             hccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence               9999999999999999999886 66666

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.69  E-value=4.1e-15  Score=132.18  Aligned_cols=168  Identities=14%  Similarity=0.116  Sum_probs=134.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHH
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNV  104 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~  104 (297)
                      ....++..|++++|+..+.++++..|...      ..+..+|.++...|++++|+..+++++...+..    ......+.
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34456789999999999999999877644      346678999999999999999999999876531    11345677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      +|.+|...|++++|+..|++++++.....    .        ....       ...+++|+|.+|..+|++++|+.+|++
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~--------~~~~-------~~~~~~nlg~~y~~~~~y~~Al~~~~k  221 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALH----D--------NEEF-------DVKVRYNHAKALYLDSRYEESLYQVNK  221 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSC----C--------CHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcC----c--------cccc-------hHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999999997632000    0        0000       125899999999999999999999999


Q ss_pred             HHHhCCCc------HH-HhHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 022442          185 AQMIDPDA------NK-ACNLGLCLIKRTRYNEA-RSVLEDVLYG  221 (297)
Q Consensus       185 Al~~~P~~------~~-~~nLg~~l~~~g~~~eA-~~~~~~al~~  221 (297)
                      ++++.++.      .. ++++|.+|..+|++++| ..+|++++..
T Consensus       222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            99986531      34 78999999999999999 7889999875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.68  E-value=6.9e-17  Score=135.24  Aligned_cols=157  Identities=15%  Similarity=0.073  Sum_probs=122.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH--------------HHHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ--------------ESLDN  103 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~--------------~~l~~  103 (297)
                      .....|++++|.+.+.......+.....+..+|.++...|++++|+..|++++.+.|.+..              ..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            3445678888888887777766777888999999999999999999999999999886430              14566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      .+|.+|...|++++|+..+++++++.                          |+++.+++++|.+|..+|++++|+.+|+
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~  146 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLY  146 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            68999999999999999999999874                          3567789999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHH-HHHHHHHh
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEAR-SVLEDVLY  220 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~-~~~~~al~  220 (297)
                      ++++++|++.. +.+++.++..+|+.+++. ..|.+++.
T Consensus       147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998 889999999999998888 55565554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.68  E-value=2.4e-15  Score=126.12  Aligned_cols=149  Identities=16%  Similarity=0.086  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      .++..+..+...|++++|+..|++++  +| .+.++.++|.++..+|++++|+..|++++.++|++.  .....+|.+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHHH
Confidence            35667788889999999999999996  44 678999999999999999999999999999999853  45666899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      ..|++++|+..|++++++.|.......          ....+.+.|..+.++.++|.+|..+|++++|+.+|+++++++|
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            999999999999999998764321100          0001123456678999999999999999999999999999999


Q ss_pred             CcHH
Q 022442          191 DANK  194 (297)
Q Consensus       191 ~~~~  194 (297)
                      ++..
T Consensus       153 ~~~~  156 (213)
T 1hh8_A          153 EPRH  156 (213)
T ss_dssp             SGGG
T ss_pred             cccc
Confidence            8753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.68  E-value=1.9e-15  Score=121.02  Aligned_cols=132  Identities=15%  Similarity=-0.002  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      .+..+..+|.++...|++++|+..|++++..+|.+.  .....+|.++...|++++|+..+++++++.|           
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------   78 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDK-----------   78 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------
Confidence            356788999999999999999999999999999753  4556689999999999999999999998743           


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-Hh--HHHHHHHHcCCHHHHHHHHHHH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-AC--NLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~--nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                                     +++.++.++|.+|..+|++++|+.+|+++++++|++.. +.  .++..+...|++++|+..++++
T Consensus        79 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           79 ---------------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence                           46678999999999999999999999999999999987 64  4555588999999999999887


Q ss_pred             Hhc
Q 022442          219 LYG  221 (297)
Q Consensus       219 l~~  221 (297)
                      ...
T Consensus       144 ~~~  146 (166)
T 1a17_A          144 RSV  146 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.68  E-value=6.1e-15  Score=123.67  Aligned_cols=127  Identities=12%  Similarity=0.062  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      ..++++|.++...|++++|+..|++++  .|.   ......+|.+|...|++++|+..|++++++.|             
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------   68 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------------   68 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------
Confidence            347789999999999999999999985  443   24566689999999999999999999999843             


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH----------------H-HhHHHHHHHHcC
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRT  206 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----------------~-~~nLg~~l~~~g  206 (297)
                                   +++.++.++|.+|..+|++++|+.+|++++++.|++.                . ++++|.++..+|
T Consensus        69 -------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  135 (213)
T 1hh8_A           69 -------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE  135 (213)
T ss_dssp             -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred             -------------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence                         5667999999999999999999999999999888766                7 899999999999


Q ss_pred             CHHHHHHHHHHHHhc
Q 022442          207 RYNEARSVLEDVLYG  221 (297)
Q Consensus       207 ~~~eA~~~~~~al~~  221 (297)
                      ++++|+..|++++..
T Consensus       136 ~~~~A~~~~~~al~~  150 (213)
T 1hh8_A          136 EWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999999997

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.68  E-value=2.8e-15  Score=133.21  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=134.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDNVL  105 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~~L  105 (297)
                      ...++..|++++|+..+++++...+..+.      .+..+|.++...|++++|+..+++++...+.  +.  .....+.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34567889999999999999998776655      2345899999999999999999999987553  11  12356779


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |.+|..+|++++|+.+|+++++......             ..      .+....+++|+|.+|..+|++++|+.+|+++
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~-------------~~------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALH-------------DN------EEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSS-------------CC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcc-------------cc------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            9999999999999999999998632100             00      0123458999999999999999999999999


Q ss_pred             HHhCCCc------HH-HhHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 022442          186 QMIDPDA------NK-ACNLGLCLIKRTR-YNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~~------~~-~~nLg~~l~~~g~-~~eA~~~~~~al~~  221 (297)
                      +++.++.      .. ++++|.+|..+|+ +++|+..|++++..
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            9987543      45 7899999999995 79999999999975

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.67  E-value=1e-15  Score=140.86  Aligned_cols=189  Identities=21%  Similarity=0.186  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CcchHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLC------SKQSQESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~------P~~~~~~l  101 (297)
                      +...+..+...|++++|+.+|+++++.+|+++    .++..+|.++..+|++++|+..+++++.+.      |.  ....
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~  128 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG--EAKS  128 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH--HHHH
Confidence            45566778899999999999999999999976    589999999999999999999999998873      32  2345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhch-----hh--hhc--CcchhHHhh-----------------hhhh---HH-
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ-----GE--AFN--GKPTKTARS-----------------HGKK---FQ-  151 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~-----~~--~~~--~~~~~~~~~-----------------~~~~---~~-  151 (297)
                      ...+|.+|...|++++|+..|++++++.+.     ..  .+.  +........                 ....   +. 
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            667899999999999999999999998431     11  111  100000011                 1110   11 


Q ss_pred             -Hhc------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          152 -VSV------RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       152 -~~l------~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                       +.+      .+....++.++|.+|..+|++++|+.+|++++++.|+..      . +.++|.+|..+|++++|+.++++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence             111      133456889999999999999999999999999987543      3 46899999999999999999999


Q ss_pred             HHhcC
Q 022442          218 VLYGR  222 (297)
Q Consensus       218 al~~~  222 (297)
                      ++...
T Consensus       289 al~~~  293 (411)
T 4a1s_A          289 TLALA  293 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99983

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=1.9e-15  Score=116.44  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      ..|....++..+|.++...|++++|+..|++++...|.+.  .....+|.+|...|++++|+..+++++++.|       
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------   81 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEP-------   81 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------
Confidence            3567888999999999999999999999999999999753  4556689999999999999999999998743       


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCC
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTR  207 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~  207 (297)
                                         +++.++.++|.+|..+|++++|+.+|++++.++|++.. +.+++.++..+|+
T Consensus        82 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           82 -------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             -------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                               45678999999999999999999999999999999988 8899999988775

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.67  E-value=3.8e-16  Score=143.70  Aligned_cols=209  Identities=17%  Similarity=0.156  Sum_probs=156.9

Q ss_pred             ccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChH
Q 022442           12 SSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSE   80 (297)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~   80 (297)
                      ..+....|....+..+.+     ..+...+.++...|++++|+.+|++++..      +|....++..+|.++..+|+++
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  143 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD  143 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence            344555665555553333     25777788889999999999999999987      6778889999999999999999


Q ss_pred             HHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhchh-----h-
Q 022442           81 EAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGK-----------------VEEQIEMLKRKLRLIYQG-----E-  133 (297)
Q Consensus        81 eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~-----------------~~eAi~~~~~al~~~p~~-----~-  133 (297)
                      +|+..|++++.+.+.    .........+|.+|...|+                 +++|+..|++++++.+..     . 
T Consensus       144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~  223 (411)
T 4a1s_A          144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG  223 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999887432    1123456678999999999                 999999999999875311     0 


Q ss_pred             -hhcCcchhHHhhhhh------hHH--HhcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH----
Q 022442          134 -AFNGKPTKTARSHGK------KFQ--VSVRQET------SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK----  194 (297)
Q Consensus       134 -~~~~~~~~~~~~~~~------~~~--~~l~p~~------~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~----  194 (297)
                       .+. .........++      .+.  +.+.|+.      ..++.++|.+|..+|++++|+.+|++++++.|+...    
T Consensus       224 ~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  302 (411)
T 4a1s_A          224 RACG-NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE  302 (411)
T ss_dssp             HHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence             110 00000000010      111  2222222      238899999999999999999999999999998883    


Q ss_pred             ---HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          195 ---ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       195 ---~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                         +.++|.++..+|++++|+.++++++..
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               357999999999999999999999997

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.67  E-value=6e-16  Score=126.74  Aligned_cols=126  Identities=17%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHH-HHHcCCH--HH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDL-YKKCGKV--EE  117 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~l-y~~~g~~--~e  117 (297)
                      ..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++.  .....+|.+ |...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchHH
Confidence            456777777777777777777777777777777777777777777777777777642  334446666 6667776  77


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      |+..|++++++.|                          +++.++.++|.+|..+|++++|+.+|+++++++|++..
T Consensus       100 A~~~~~~al~~~p--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          100 TRAMIDKALALDS--------------------------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            7777777776533                          34556677777777777777777777777777776653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=142.95  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDN  103 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~  103 (297)
                      ++..+..+...|++++|+.+|++++..+|+++    .++..+|.++...|++++|+..+++++.+.+.    ........
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   91 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   91 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            34444444555555555555555555544442    34445555555555555555555554433210    00112333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      .+|.+|...|++++|+..+++++++.
T Consensus        92 ~la~~~~~~g~~~~A~~~~~~al~~~  117 (406)
T 3sf4_A           92 NLGNTLKVLGNFDEAIVCCQRHLDIS  117 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34555555555555555555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.67  E-value=1.4e-15  Score=123.39  Aligned_cols=115  Identities=15%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  138 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~  138 (297)
                      ++..+.++..+|.++...|++++|+..|++++.++|+++  .++..+|.+|...|++++|+..|++++++.|        
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------   76 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDP--------   76 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence            455677788888888888888888888888888888743  4555678888888888888888888888743        


Q ss_pred             chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                                        +++.+++++|.+|..+|++++|+.+|+++++++|++.. +++++..
T Consensus        77 ------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           77 ------------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             ------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence                              45678888888888888888888888888888888876 6666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.66  E-value=1.6e-15  Score=115.93  Aligned_cols=124  Identities=18%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhc
Q 022442           57 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFN  136 (297)
Q Consensus        57 ~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~  136 (297)
                      ..+|..+.++..+|.++...|++++|+..+++++...|++.  .....+|.++...|++++|+..++++++..|      
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------   77 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICIDP------   77 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------
Confidence            34566778899999999999999999999999999999753  4556689999999999999999999998743      


Q ss_pred             CcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442          137 GKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  208 (297)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~  208 (297)
                                          +++.++.++|.+|..+|++++|+.+|+++++++|++.. +.++|.++..+|++
T Consensus        78 --------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           78 --------------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             --------------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence                                45678999999999999999999999999999999998 89999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.66  E-value=1.5e-15  Score=138.54  Aligned_cols=209  Identities=15%  Similarity=0.109  Sum_probs=142.6

Q ss_pred             ccccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCC
Q 022442           10 IFSSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDR   78 (297)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~   78 (297)
                      +........|....+..+.+     ..+...+.++...|++++|+.+|++++..      .|....++..+|.++..+|+
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  102 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN  102 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC
Confidence            33445556675555543333     35667788889999999999999999886      45567889999999999999


Q ss_pred             hHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH--
Q 022442           79 SEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV--  152 (297)
Q Consensus        79 ~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--  152 (297)
                      +++|+..+++++.+.|..    ........+|.+|...|++.++...  ..+...+... .. ..............+  
T Consensus       103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~~~~~~~~a-~~-~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A          103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP--QDVGEFPEEV-RD-ALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC---------CCCCHHH-HH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccccc--chhhhhhhhH-HH-HHHHHHHHHHHHHHHHH
Confidence            999999999999987752    1233567777777777766554431  1111111000 00 000000000011111  


Q ss_pred             h--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          153 S--VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       153 ~--l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .  -.|....++.++|.+|..+|++++|+.+|++++++.|+..      . +.++|.++..+|++++|+.++++++...
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  257 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  257 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            1  1234456899999999999999999999999999976542      3 5689999999999999999999999984

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.66  E-value=2.2e-15  Score=124.96  Aligned_cols=162  Identities=12%  Similarity=0.023  Sum_probs=126.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHcCCH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~g~~  115 (297)
                      +..|++++|...++......+....++..+|.++..+|++++|+..+++++.+...    .........+|.+|...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            56899999999665555544478899999999999999999999999999874321    11234556789999999999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhh-hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--c
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG-KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD--A  192 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~--~  192 (297)
                      ++|+..+++++.+...              .+ ...      ....++.++|.+|..+|++++|+.+|++++++.+.  +
T Consensus        83 ~~A~~~~~~al~~~~~--------------~~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A           83 DAARRCFLEERELLAS--------------LPEDPL------AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHH--------------SCCCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHH--------------cCccHH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            9999999999998420              00 000      12357899999999999999999999999987432  2


Q ss_pred             H----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          193 N----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       193 ~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .    . +.++|.++..+|++++|+..+++++..
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            2    2 468999999999999999999999975

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.66  E-value=4.9e-15  Score=126.71  Aligned_cols=137  Identities=14%  Similarity=0.060  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      .+.+++.+|..+...|++++|+..|++++...|++. .......+|.+|...|++++|+..|+++++..|...       
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-------   75 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-------   75 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-------
Confidence            457889999999999999999999999999999742 224556689999999999999999999999876321       


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHhCCCcHH-H------
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQ------------------KTNFMAAEVVYQKAQMIDPDANK-A------  195 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~------------------~g~~~eA~~~y~~Al~~~P~~~~-~------  195 (297)
                                      ..+.+++.+|.+|..                  +|++++|+..|+++++.+|+++. +      
T Consensus        76 ----------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l  139 (225)
T 2yhc_A           76 ----------------NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL  139 (225)
T ss_dssp             ----------------THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence                            112356666666654                  78999999999999999999874 3      


Q ss_pred             -----------hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 -----------CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 -----------~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                                 ..+|.+|..+|++++|+..|++++..
T Consensus       140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A          140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                       57899999999999999999999997

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=1.8e-15  Score=123.88  Aligned_cols=125  Identities=17%  Similarity=0.175  Sum_probs=108.2

Q ss_pred             HHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442           73 MKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  152 (297)
Q Consensus        73 l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  152 (297)
                      +...|++++|+..+++++..+|.+.  .....+|.+|...|++++|+..|++++++.|                      
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------------   75 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRG----------------------   75 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----------------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------------
Confidence            4567999999999999999999853  4566689999999999999999999999854                      


Q ss_pred             hcCCCcHHHHHHHHHH-HHHCCCh--HHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 022442          153 SVRQETSRLLGNLAWA-YMQKTNF--MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPG  225 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~-y~~~g~~--~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~  225 (297)
                          +++.++.++|.+ |...|++  ++|+.+|+++++++|++.. +.++|.++..+|++++|+..|++++...+.+
T Consensus        76 ----~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           76 ----ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             ----SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             ----CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence                466789999999 8899999  9999999999999999998 9999999999999999999999999984433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.65  E-value=9.1e-17  Score=152.66  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-------------HHHHHHHHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLY  109 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-------------~~~l~~~L~~ly  109 (297)
                      +++++|+..|++++..+|..+.++.++|.++..+|++++|+..|++++.++|.+.             ...+++.+|.+|
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            4667888889999999999999999999999999999999999999999999742             034666799999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      .++|++++|+..|+++|++.|                          +++.+++++|.+|..+|++++|+..|++|++++
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p--------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDS--------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHhcCC--------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            999999999999999999854                          567899999999999999999999999999999


Q ss_pred             CCcHH-HhHHHHHHHHcCCHHHHHH-HHHHHHh
Q 022442          190 PDANK-ACNLGLCLIKRTRYNEARS-VLEDVLY  220 (297)
Q Consensus       190 P~~~~-~~nLg~~l~~~g~~~eA~~-~~~~al~  220 (297)
                      |++.. +.+|+.++..+|++++|.. .|++++.
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998 9999999999999998874 4555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.65  E-value=4.2e-15  Score=131.01  Aligned_cols=191  Identities=18%  Similarity=0.180  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLD  102 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~  102 (297)
                      .++..+..+...|++++|+.+|+++++.+|++    ..++..+|.++...|++++|+..+++++.+.+.    .......
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            35556778889999999999999999999997    467889999999999999999999998876331    1123456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-------hhc--CcchhHHhh--------------------hhhh---H
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-------AFN--GKPTKTARS--------------------HGKK---F  150 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-------~~~--~~~~~~~~~--------------------~~~~---~  150 (297)
                      ..+|.+|...|++++|+..+++++++.+...       .+.  +........                    ....   +
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            6789999999999999999999999865311       111  000000000                    1110   1


Q ss_pred             H--Hhc------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH------H-HhHHHHHHHHcCCHHHHHHHH
Q 022442          151 Q--VSV------RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN------K-ACNLGLCLIKRTRYNEARSVL  215 (297)
Q Consensus       151 ~--~~l------~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~------~-~~nLg~~l~~~g~~~eA~~~~  215 (297)
                      .  +.+      .+....++.++|.+|..+|++++|+.+|++++++.|...      . +.++|.++...|++++|+..+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            1  111      233455788899999999999999999999999976432      3 467899999999999999999


Q ss_pred             HHHHhc
Q 022442          216 EDVLYG  221 (297)
Q Consensus       216 ~~al~~  221 (297)
                      ++++..
T Consensus       247 ~~al~~  252 (338)
T 3ro2_A          247 KKTLLL  252 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.65  E-value=2.3e-15  Score=117.80  Aligned_cols=117  Identities=12%  Similarity=0.054  Sum_probs=95.8

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      +.+.++.+||.++.++|++++|+..|++++.++|+++  ..++.+|.+|..+|++++|+..++++|++.|.....     
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----   78 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-----   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence            3456788999999999999999999999999999853  456668999999999999999999999997632100     


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL  198 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL  198 (297)
                           +         +..+.++.++|.+|..+|++++|+.+|+++|...|+......|
T Consensus        79 -----~---------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           79 -----Y---------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             -----H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             -----h---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence                 0         0123588999999999999999999999999999975434333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.64  E-value=4.2e-15  Score=136.51  Aligned_cols=168  Identities=10%  Similarity=-0.031  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAG-------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQE   99 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~   99 (297)
                      ++...+.++...|++++|+.++++|+...       +....++.++|.++..+|++++|+..|++++.+.|..    ...
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG  224 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            57778888999999999999999999963       3345689999999999999999999999999886631    112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .....+|.+|..+|++++|+..|++++++....              .      ..|..+.++.++|.+|..+|++++|+
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--------------~------~~~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--------------N------ILPSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------T------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--------------c------cchhHHHHHHHHHHHHHHCCCHHHHH
Confidence            345669999999999999999999999974210              0      01345678999999999999999999


Q ss_pred             HHHHHHHHhCC-----CcHH-HhHHHHHHHHcCC---HHHHHHHHHHH
Q 022442          180 VVYQKAQMIDP-----DANK-ACNLGLCLIKRTR---YNEARSVLEDV  218 (297)
Q Consensus       180 ~~y~~Al~~~P-----~~~~-~~nLg~~l~~~g~---~~eA~~~~~~a  218 (297)
                      .+|++++++.+     .... +.+||.++...|+   +++|+..+++.
T Consensus       285 ~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          285 EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            99999999843     3333 5678999999999   77777777665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=1.3e-14  Score=139.41  Aligned_cols=177  Identities=10%  Similarity=0.015  Sum_probs=147.8

Q ss_pred             hh-hhhhcCCCCCcHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChHH
Q 022442           18 LF-HVIHKVPAGDGPYVRAKHAQLV-------QKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEE   81 (297)
Q Consensus        18 ~~-~~~~~~~~~~~~~~~~~~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~e   81 (297)
                      .| +.+...|..+..+...+.+...       .|+++       +|+..|++|++ ..|+...+|..+|.++...|++++
T Consensus       260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~  339 (530)
T 2ooe_A          260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK  339 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence            45 4455557666666666666654       69987       89999999997 899999999999999999999999


Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                      |+.+|++++...|.+. ..++..++.++.+.|++++|+.+|+++++..|                          ....+
T Consensus       340 A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--------------------------~~~~~  392 (530)
T 2ooe_A          340 VHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--------------------------TRHHV  392 (530)
T ss_dssp             HHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--------------------------CCTHH
T ss_pred             HHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--------------------------CchHH
Confidence            9999999999999743 23556678888999999999999999998743                          12233


Q ss_pred             HHHHHHH-HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          162 LGNLAWA-YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       162 l~nLg~~-y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +...+.+ +...|++++|..+|+++++..|+++. |.+++.++...|++++|..+|++++..
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            4444444 45699999999999999999999998 999999999999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.64  E-value=4.3e-15  Score=121.05  Aligned_cols=125  Identities=17%  Similarity=0.007  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      .....|..+...|++++|+..|+++|++.|....-            .  .+...|.++.+|.|+|.++..+|+|++|+.
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------------~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------------E--AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------------S--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------------h--hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            34457888999999999999999999998731000            0  000112245599999999999999999999


Q ss_pred             HHHHHHHh-------CCCcHH-H----hHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q 022442          181 VYQKAQMI-------DPDANK-A----CNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELL  239 (297)
Q Consensus       181 ~y~~Al~~-------~P~~~~-~----~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l  239 (297)
                      +|.+||++       +|++.. |    +++|.+|..+|++++|+..|+++++..|.+....+.++.+....
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            99999999       999998 9    99999999999999999999999998444444344444444433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.64  E-value=1.7e-15  Score=133.61  Aligned_cols=209  Identities=18%  Similarity=0.201  Sum_probs=155.0

Q ss_pred             ccchhhhhhhhhcCCCCC-----cHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChH
Q 022442           12 SSKKEDLFHVIHKVPAGD-----GPYVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSE   80 (297)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~   80 (297)
                      .......|....+..+.+     ..+...+.++...|++++|+.++++++..      .|....++..+|.++..+|+++
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  100 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD  100 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence            344555665444443333     34667788889999999999999999986      5566788999999999999999


Q ss_pred             HHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhhchh----
Q 022442           81 EAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGK--------------------VEEQIEMLKRKLRLIYQG----  132 (297)
Q Consensus        81 eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~--------------------~~eAi~~~~~al~~~p~~----  132 (297)
                      +|+..+++++.+.|..    ........+|.+|...|+                    +++|+..+++++.+.+..    
T Consensus       101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~  180 (338)
T 3ro2_A          101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA  180 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9999999998876631    112355678999999999                    999999999999874311    


Q ss_pred             -h--hhcCcchhHHhhhh---h---hHH--HhcCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-
Q 022442          133 -E--AFNGKPTKTARSHG---K---KFQ--VSVRQ------ETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-  194 (297)
Q Consensus       133 -~--~~~~~~~~~~~~~~---~---~~~--~~l~p------~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-  194 (297)
                       .  .+. .........+   .   .+.  +.+.+      ....++.++|.+|..+|++++|+.+|++++.+.|+... 
T Consensus       181 ~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (338)
T 3ro2_A          181 AQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  259 (338)
T ss_dssp             HHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence             0  110 0000000000   0   111  12211      12348899999999999999999999999999998882 


Q ss_pred             ------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          195 ------ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       195 ------~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                            +.++|.++..+|++++|+.++++++..
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                  357999999999999999999999997

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1.1e-14  Score=129.47  Aligned_cols=181  Identities=12%  Similarity=-0.009  Sum_probs=135.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHH-------HHHHHHCCChHHHHHHHHHHHhhCCcc----hH-----------
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQ-----------   98 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~L-------g~~l~~~g~~~eAi~~~~~al~~~P~~----~~-----------   98 (297)
                      ..+|+..|...|.++++++|...++|..+       +.++...+++.+++..+++.+.+.|..    ..           
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            58999999999999999999999999999       899999999999999999988887752    11           


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc-CcchhHHhhhhhh---HHHhcC-CCc---HHHHHHH
Q 022442           99 ----ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN-GKPTKTARSHGKK---FQVSVR-QET---SRLLGNL  165 (297)
Q Consensus        99 ----~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~-~~~~~~~~~~~~~---~~~~l~-p~~---~~~l~nL  165 (297)
                          ..+...++.+|...|++++|.+.|..++...|... .|. +...-......+.   +.-.+. |+.   ..++++|
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence                23444567788889999999999988877665332 111 0000000000110   110111 111   3589999


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhC--CC-cHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMID--PD-ANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~--P~-~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |.++..+|++++|+.+|++++.-.  |. .+. ++++|.++.++|+.++|...|++++..
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999998654  66 556 899999999999999999999999997

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.64  E-value=2e-15  Score=124.13  Aligned_cols=133  Identities=16%  Similarity=0.098  Sum_probs=110.0

Q ss_pred             CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      |...+.+..+|.++...|++++|+..|++++..+|++.  .....+|.+|...|++++|+..|++++...|         
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------   71 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG--DVKLAKADCLLETKQFELAQELLATIPLEYQ---------   71 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---------
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---------
Confidence            44445688999999999999999999999999999853  4566689999999999999999999888754         


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                                        ++..+..++.+. ...+...+|+.+|+++++++|+++. ++++|.++...|++++|+..|++
T Consensus        72 ------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  133 (176)
T 2r5s_A           72 ------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN  133 (176)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                              223334444342 3334556789999999999999998 99999999999999999999999


Q ss_pred             HHhc
Q 022442          218 VLYG  221 (297)
Q Consensus       218 al~~  221 (297)
                      ++..
T Consensus       134 ~l~~  137 (176)
T 2r5s_A          134 ILKV  137 (176)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            9997

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.63  E-value=3.6e-14  Score=130.28  Aligned_cols=166  Identities=11%  Similarity=0.081  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQE   99 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~   99 (297)
                      ++...+.++...|+++.|+.++++|+...+       ....++.++|.++..+|++++|++.|++++.+.+.    ....
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  222 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA  222 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            577778889999999999999999998533       24668899999999999999999999999887442    1123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ...+.+|.+|..+|++++|+..|++++++....                     ..|..+.++.++|.+|..+|++++|+
T Consensus       223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence            455679999999999999999999999973210                     12334568999999999999999999


Q ss_pred             HHHHHHHHhCCC-----cHH-HhHHHHHHHHcCC---HHHHHHHHHH
Q 022442          180 VVYQKAQMIDPD-----ANK-ACNLGLCLIKRTR---YNEARSVLED  217 (297)
Q Consensus       180 ~~y~~Al~~~P~-----~~~-~~nLg~~l~~~g~---~~eA~~~~~~  217 (297)
                      .+|++++++.+.     ... ...|+.++...|+   +.+|+..+++
T Consensus       282 ~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          282 QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999998543     222 3344555555555   4444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.63  E-value=2.3e-14  Score=108.49  Aligned_cols=120  Identities=25%  Similarity=0.235  Sum_probs=103.4

Q ss_pred             CCCh-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           59 GDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        59 ~p~~-~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      +|.. ..+++.+|.++...|++++|+..+++++...|.+.  .....+|.++...|++++|+..++++++..|       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------   74 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------   74 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------
Confidence            4444 77899999999999999999999999999999743  4556689999999999999999999998743       


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  206 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g  206 (297)
                                         +++.++.++|.+|...|++++|+.+|++++.++|+++. +.++|.++..+|
T Consensus        75 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           75 -------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             -------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                               45668899999999999999999999999999999998 889999987765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.61  E-value=3.4e-15  Score=121.60  Aligned_cols=120  Identities=10%  Similarity=-0.030  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-------ch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-------QS---QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG  132 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-------~~---~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~  132 (297)
                      ++.+.++|..+.+.|++++|+..|++++.++|+       +.   ....++++|.++..+|++++|+..|+++|++..  
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n--   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN--   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence            456788999999999999999999999999997       21   112566789999999999999999999999721  


Q ss_pred             hhhcCcchhHHhhhhhhHHHhcCCCcHHHH----HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH
Q 022442          133 EAFNGKPTKTARSHGKKFQVSVRQETSRLL----GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC  201 (297)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l----~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~  201 (297)
                                       -..+++|+++.+|    +++|.+|..+|++++|+.+|++|++++|++.. .-.+..+
T Consensus        89 -----------------~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           89 -----------------RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             -----------------HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             -----------------ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                             0124567788899    99999999999999999999999999999875 4444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=3.4e-14  Score=113.65  Aligned_cols=130  Identities=11%  Similarity=-0.019  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      .+...+..+...|++++|+..|++++..+|.++.++.++|.++..+|++++|+..+++++..+|.+.  .....+|.+|.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence            4666777888999999999999999999999999999999999999999999999999999999853  45566899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH--HHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL--GNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l--~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                      ..|++++|+..|++++++.|                          ++..++  ..++..+...|++++|+..++++..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p--------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            99999999999999999855                          334455  44555588999999999999998765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.2e-14  Score=113.18  Aligned_cols=106  Identities=13%  Similarity=-0.004  Sum_probs=81.4

Q ss_pred             cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           58 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      .+|..+.++..+|.++...|++++|+..|++++..+|++.  .....+|.+|...|++++|+..|++++++.|       
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------   74 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDG-------   74 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------
Confidence            4567777888888888888888888888888888888743  3555578888888888888888888887643       


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                                         +++.++.++|.+|..+|++++|+.+|+++++++|+
T Consensus        75 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           75 -------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence                               45667888888888888888888888888888777

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.8e-14  Score=110.27  Aligned_cols=95  Identities=17%  Similarity=0.064  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ....+|..+...|++++|+..|++++++.|                          +++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~~~~a~~~~~~~~~~~A~~   59 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------------------------EDARGYSNRAAALAKLMSFPEAIA   59 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------------------CChHHHHHHHHHHHHhcCHHHHHH
Confidence            445589999999999999999999999854                          567899999999999999999999


Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .|+++++++|+++. ++++|.++..+|++++|+..|++++..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            99999999999998 999999999999999999999999987

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.60  E-value=5.9e-14  Score=127.93  Aligned_cols=172  Identities=12%  Similarity=0.001  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--h--HHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--S--QESLD  102 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--~--~~~l~  102 (297)
                      ....+.+++..|++++|+.++++++...|...     .++..+|.++..+|++++|+..+++++.+.|..  .  .....
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            33445677789999999999999999776543     368899999999999999999999999877642  1  11234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..+|.++...|++++|+..|++++++.+..              +..    -.|....++.++|.+|..+|++++|+.+|
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~--------------~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~  158 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQ--------------HLE----QLPMHEFLVRIRAQLLWAWARLDEAEASA  158 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCT----TSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------------ccc----cCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            568999999999999999999999985310              000    00123457889999999999999999999


Q ss_pred             HHHHHhCCCc-----HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDA-----NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~-----~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++++.|..     .. +.++|.++...|++++|..++++++..
T Consensus       159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999998753     23 678999999999999999999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.60  E-value=5.9e-14  Score=113.66  Aligned_cols=118  Identities=18%  Similarity=0.135  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .....+|.++...|++++|+..|++++++.|                          +++.++.++|.+|..+|++++|+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~g~~~~A~   65 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------------------ANPIYLSNRAAAYSASGQHEKAA   65 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------cCHHHHHHHHHHHHHccCHHHHH
Confidence            4556689999999999999999999999854                          56789999999999999999999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--chhhHHHHHHHHHHHH
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE--DGRTRKRAEELLLELE  243 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~a~~~l~~~~  243 (297)
                      .+|+++++++|++.. ++++|.+|..+|++++|+..|++++...+....  ....+..+...+.+..
T Consensus        66 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           66 EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 999999999999999999999999998443333  2333444455555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.60  E-value=1.2e-14  Score=117.57  Aligned_cols=115  Identities=17%  Similarity=0.067  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCcch--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGL--------CSKQS--------QESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~--------~P~~~--------~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      +..+..+|..+...|++++|+..|++++.+        .|.+.        ...++..+|.+|...|++++|+..++++|
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456778888888888888888888888887        22110        12334445566666666666666666666


Q ss_pred             HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHH
Q 022442          127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLI  203 (297)
Q Consensus       127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~  203 (297)
                      ++.                          |+++.+++++|.+|..+|++++|+..|+++++++|+++ . ...|+.+..
T Consensus        91 ~~~--------------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           91 KRE--------------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             hcC--------------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            553                          23445566666666666666666666666666666655 3 334444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=1.2e-14  Score=112.89  Aligned_cols=64  Identities=17%  Similarity=0.165  Sum_probs=32.3

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++.++.++|.++..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus        50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           50 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444555555555555555555555555555555554 445555555555555555555555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=9.5e-14  Score=104.09  Aligned_cols=113  Identities=14%  Similarity=0.053  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      .+.+++.+|.++...|++++|+..|++++...|.+.  .....+|.+|...|++++|+..++++++..|           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------   69 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------   69 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----------
Confidence            456788899999999999999999999999998743  3555688889999999999999999888743           


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                                     +++.++.++|.+|..+|++++|+.+|+++++++|+++. +..++.+.
T Consensus        70 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           70 ---------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ---------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence                           45678899999999999999999999999999999887 77777764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=2.5e-14  Score=121.53  Aligned_cols=141  Identities=12%  Similarity=-0.033  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC----CHHHHHHH
Q 022442           46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG----KVEEQIEM  121 (297)
Q Consensus        46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g----~~~eAi~~  121 (297)
                      .+|+.+|+++.+.  .++.++++||.++...+++++|+..|+++...+..    ...+.||.+|.. |    ++++|+..
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            4588999999986  78899999999999999999999999999887532    345568888888 7    99999999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCC--cHH-
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPD--ANK-  194 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~--~~~-  194 (297)
                      |+++++.                            .++.++++||.+|..    .+++++|+.+|++|++..|.  ++. 
T Consensus        76 ~~~A~~~----------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a  127 (212)
T 3rjv_A           76 AEKAVEA----------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA  127 (212)
T ss_dssp             HHHHHHT----------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred             HHHHHHC----------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence            9999764                            356789999999998    99999999999999999994  466 


Q ss_pred             HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          195 ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       195 ~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      +++||.+|..    .+++++|+.+|++++..
T Consensus       128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            8999999999    88999999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=2.1e-14  Score=111.42  Aligned_cols=94  Identities=17%  Similarity=0.022  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLD-------NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~-------~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      .++.+|.++.+.|++++|+..|++++.         ..       ..+|.++...|++++|+..|++++++.        
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~---------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ---------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence            366777777777777777777766552         34       246777777777777777777777764        


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                        |+++.++.+||.+|..+|++++|+.+|+++++++|++.
T Consensus        82 ------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           82 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence                              45667888888888888888888888888888887764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.58  E-value=5.1e-14  Score=128.29  Aligned_cols=133  Identities=12%  Similarity=0.000  Sum_probs=118.6

Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 022442           28 GDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGL   92 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~   92 (297)
                      ...++...+.++...|++++|+..|++++.++|+.               ..++.++|.++..+|++++|+..|++++.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34467777888999999999999999999999998               689999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      +|++.  ..++.+|.+|..+|++++|+..|++++++.                          |+++.++.++|.++..+
T Consensus       226 ~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------------------P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          226 DSNNE--KGLSRRGEAHLAVNDFELARADFQKVLQLY--------------------------PNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SSCHHHHHHHHHHHHHH
T ss_pred             CCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHH
Confidence            99853  456668999999999999999999999985                          45677999999999999


Q ss_pred             CChHHH-HHHHHHHHHh
Q 022442          173 TNFMAA-EVVYQKAQMI  188 (297)
Q Consensus       173 g~~~eA-~~~y~~Al~~  188 (297)
                      |++++| ...|++++..
T Consensus       278 ~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          278 RRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999 5578887764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=8.7e-14  Score=109.12  Aligned_cols=122  Identities=12%  Similarity=-0.004  Sum_probs=101.9

Q ss_pred             HcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhh
Q 022442           57 NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAF  135 (297)
Q Consensus        57 ~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~  135 (297)
                      ..+|.....+..+|..+...|++++|+..|++++..+|++. .......+|.+|...|++++|+..+++++++.|     
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----   96 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----   96 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----
Confidence            34577888899999999999999999999999999998731 134556688999999999999999999988743     


Q ss_pred             cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442          136 NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                                           +++.++.++|.+|..+|++++|+.+|+++++++|++.. +..++.+...
T Consensus        97 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           97 ---------------------GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             ---------------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence                                 45678899999999999999999999999999999987 7777766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.56  E-value=1.4e-14  Score=128.71  Aligned_cols=106  Identities=13%  Similarity=0.012  Sum_probs=96.4

Q ss_pred             CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           60 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        60 p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      |..+.++..+|.++...|++++|+..|++++..+|++.  .+...+|.+|...|++++|+..|++++++.          
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------   68 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD----------   68 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----------
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------
Confidence            56788999999999999999999999999999999853  466679999999999999999999999874          


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                                      |+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus        69 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           69 ----------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence                            45677999999999999999999999999999999763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.56  E-value=7.4e-14  Score=109.15  Aligned_cols=100  Identities=16%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-----HHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-----QESLDNVL  105 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-----~~~l~~~L  105 (297)
                      ++..+|..+...|++++|+.+|++|+.++|+++.++.++|.+|..+|++++|+..|++++.++|+..     ....+..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            5667899999999999999999999999999999999999999999999999999999999988531     11345668


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      |.+|..+|++++|+..|+++|...|
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            9999999999999999999999855

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.55  E-value=5.2e-14  Score=126.15  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=109.3

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           67 KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        67 ~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ...|.++..+|++++|+..|++++.+.+..    .....+..+|.+|..+|++++|+.+|++++++.+.           
T Consensus        40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-----------  108 (307)
T 2ifu_A           40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-----------  108 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----------
Confidence            345789999999999999999998886631    12245566899999999999999999999998531           


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVL  215 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA~~~~  215 (297)
                         .++..      ..+.++.++|.+|.. |++++|+.+|++|+++.|+.      .. +.++|.+|..+|++++|+.+|
T Consensus       109 ---~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  178 (307)
T 2ifu_A          109 ---NGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL  178 (307)
T ss_dssp             ---TTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---cCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence               00000      023588999999999 99999999999999998753      24 679999999999999999999


Q ss_pred             HHHHhc
Q 022442          216 EDVLYG  221 (297)
Q Consensus       216 ~~al~~  221 (297)
                      ++++..
T Consensus       179 ~~al~~  184 (307)
T 2ifu_A          179 QKEKSM  184 (307)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=1.6e-14  Score=120.78  Aligned_cols=149  Identities=15%  Similarity=0.014  Sum_probs=100.2

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      +.+..+...+......|++++|.+.++......+..  ......+|.++...|++++|+..|++++++.|....+...  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--   77 (198)
T 2fbn_A            2 GSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--   77 (198)
T ss_dssp             --------------------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--
T ss_pred             CCcccccchhhhhhhhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--
Confidence            445556778888899999999998887655444432  2344568999999999999999999999987632211100  


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      .. ......+       ...++.++|.+|..+|++++|+.+|++++.++|++.. ++++|.+|..+|++++|+..|++++
T Consensus        78 ~~-~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           78 IL-LDKKKNI-------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HH-HHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hH-HHHHHHH-------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            00 0000000       1368999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hc
Q 022442          220 YG  221 (297)
Q Consensus       220 ~~  221 (297)
                      ..
T Consensus       150 ~~  151 (198)
T 2fbn_A          150 SL  151 (198)
T ss_dssp             HH
T ss_pred             HH
Confidence            97

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=7.9e-14  Score=107.17  Aligned_cols=120  Identities=10%  Similarity=-0.006  Sum_probs=105.9

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI  106 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~  106 (297)
                      ....++...+..+...|++++|+.+|++++..+|.+..++..+|.++..+|++++|+..+++++...|.+.  .....+|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHHHHH
Confidence            33446778888899999999999999999999999999999999999999999999999999999999853  4556689


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN  174 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~  174 (297)
                      .+|...|++++|+..|++++++.|                          ++..++..+|.++..+|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDS--------------------------SCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCG--------------------------GGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCC--------------------------CchHHHHHHHHHHHHhcC
Confidence            999999999999999999999854                          344678899999988774

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.54  E-value=7.9e-13  Score=125.67  Aligned_cols=198  Identities=15%  Similarity=0.097  Sum_probs=152.5

Q ss_pred             hhhhhhhhhcCCCCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHH
Q 022442           15 KEDLFHVIHKVPAGDGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAI   86 (297)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~   86 (297)
                      ....|....+. ....+.+.++.++..    .+++++|+.+|++++..  .++.++++||.++..    .+++++|+..|
T Consensus       206 A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~  282 (490)
T 2xm6_A          206 SAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWY  282 (490)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence            33445444444 345678888888876    89999999999999886  457889999999999    99999999999


Q ss_pred             HHHHhhCCcchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhchhhhhc-CcchhH---Hhhhh---hhHHHhc
Q 022442           87 KSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT---ARSHG---KKFQVSV  154 (297)
Q Consensus        87 ~~al~~~P~~~~~~l~~~L~~ly~~~-----g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~---~~~~~---~~~~~~l  154 (297)
                      +++...++.    .....||.+|...     +++++|+..|+++++..++...++ +.....   .....   ..+...+
T Consensus       283 ~~a~~~~~~----~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~  358 (490)
T 2xm6_A          283 RKSAEQGNS----DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA  358 (490)
T ss_dssp             HHHHTTTCH----HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCH----HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence            999877543    3445588899888     999999999999999865443332 111000   00011   1123355


Q ss_pred             CCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          155 RQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       155 ~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      +.+++.++++||.+|..    .+++++|+.+|++|++.  +++. +++||.+|..    .+++++|..+|++++..
T Consensus       359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            56789999999999999    89999999999999986  3566 8899999998    89999999999999986

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.54  E-value=1.1e-12  Score=118.34  Aligned_cols=154  Identities=12%  Similarity=-0.007  Sum_probs=108.7

Q ss_pred             HHcCCH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH----HHc
Q 022442           40 LVQKDP-EAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY----KKC  112 (297)
Q Consensus        40 ~~~g~~-~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly----~~~  112 (297)
                      ...|.+ ++|+.++.++|.++|++..+|+..+.++..+|  +++++++.+..++..+|++..  +.+..+.++    ...
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHHHHhc
Confidence            345554 68999999999999999999999999999999  999999999999999998532  333345555    666


Q ss_pred             ---CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH--HHHHHHHHHHH
Q 022442          113 ---GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--AAEVVYQKAQM  187 (297)
Q Consensus       113 ---g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~--eA~~~y~~Al~  187 (297)
                         +++++++.++.++++.+|.                          +..++++.++++..+|+++  ++++++.++++
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pk--------------------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~  174 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPK--------------------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID  174 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence               8999999999999998663                          3345555555555555554  55555555555


Q ss_pred             hCCCcHH-HhHHHHHHHHcCC------HHHHHHHHHHHHhc
Q 022442          188 IDPDANK-ACNLGLCLIKRTR------YNEARSVLEDVLYG  221 (297)
Q Consensus       188 ~~P~~~~-~~nLg~~l~~~g~------~~eA~~~~~~al~~  221 (297)
                      .+|.|.. |.+.+.++...|+      +++++..+.+++..
T Consensus       175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence            5555554 5555555555544      55555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.54  E-value=1.3e-14  Score=118.08  Aligned_cols=106  Identities=17%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM  121 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~  121 (297)
                      .+.+++|+..|+++++++|+++++|.++|.++..+|+++.+..+.+                          .+++|+..
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi~~   68 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAITK   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHHHH
Confidence            4567889999999999999999999999999988887765555321                          37889999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHHhCC
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-----------NFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-----------~~~eA~~~y~~Al~~~P  190 (297)
                      |+++|+++                          |++++++++||.+|..+|           ++++|+.+|++|++++|
T Consensus        69 le~AL~ld--------------------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           69 FEEALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhC--------------------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            99988874                          456778999999998875           89999999999999999


Q ss_pred             CcHH-HhHHH
Q 022442          191 DANK-ACNLG  199 (297)
Q Consensus       191 ~~~~-~~nLg  199 (297)
                      ++.. +.+|.
T Consensus       123 ~~~~y~~al~  132 (158)
T 1zu2_A          123 DNTHYLKSLE  132 (158)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9876 44443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.54  E-value=1.5e-13  Score=113.63  Aligned_cols=159  Identities=13%  Similarity=0.084  Sum_probs=122.7

Q ss_pred             hhhhhhhhhcCC-CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442           15 KEDLFHVIHKVP-AGDGPYVRAKHAQLVQKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        15 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      ....++.+...| ....++...+.++...|++++|+..|++++.      ..|....++.++|.++..+|++++|+..++
T Consensus        11 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   90 (203)
T 3gw4_A           11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFL   90 (203)
T ss_dssp             HHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            333333444444 2233677778889999999999999999999      556677889999999999999999999999


Q ss_pred             HHHhh---CCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442           88 SFRGL---CSKQ--SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  162 (297)
Q Consensus        88 ~al~~---~P~~--~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l  162 (297)
                      +++.+   .|++  ........+|.++...|++++|+..+++++++.+..              +...      ....++
T Consensus        91 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~------~~~~~~  150 (203)
T 3gw4_A           91 EERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--------------DDQV------AIACAF  150 (203)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------------TCHH------HHHHHH
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------------cchH------HHHHHH
Confidence            99887   4421  123445678999999999999999999999874310              0000      013468


Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                      .++|.+|..+|++++|+.+|++++++.....
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999855443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.54  E-value=1e-12  Score=124.83  Aligned_cols=187  Identities=12%  Similarity=0.042  Sum_probs=147.4

Q ss_pred             CCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchH
Q 022442           27 AGDGPYVRAKHAQLV----QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQ   98 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~   98 (297)
                      ....+.+.++.++..    .+++++|+.+|++++..  +++.+++.||.+|..    .+++++|+..|+++...+..   
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---  111 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLP---  111 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---
Confidence            355678888888887    89999999999999986  578899999999999    99999999999999887533   


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhc-CcchhH----Hhhhh---hhHHHhcCCCcHHHHHHHH
Q 022442           99 ESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKT----ARSHG---KKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus        99 ~~l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~----~~~~~---~~~~~~l~p~~~~~l~nLg  166 (297)
                       ...+.||.+|..    .+++++|+..|+++++...+...++ +.....    ..+..   ..+...++..++.++++||
T Consensus       112 -~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg  190 (490)
T 2xm6_A          112 -QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG  190 (490)
T ss_dssp             -HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence             344558899998    8999999999999998754332221 110000    00011   1122345567889999999


Q ss_pred             HHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          167 WAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       167 ~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      .+|..    .+++++|+.+|+++++.  +++. .++||.+|..    .+++++|+.+|++++..
T Consensus       191 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          191 YMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            99998    89999999999999876  4566 8899999997    89999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.54  E-value=3.2e-13  Score=102.93  Aligned_cols=119  Identities=16%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ..+...+..+...|++++|+.+|++++..+|+.+.++..+|.++...|++++|+..+++++...|++.  .....+|.+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHHHH
Confidence            35667788888999999999999999999999999999999999999999999999999999999853  4556689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM  176 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~  176 (297)
                      ...|++++|+..|++++++.|                          +++.++..+|.++..+|+++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p--------------------------~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP--------------------------DNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCHHHHHHHHHHHHhcCc--------------------------cchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999854                          45678999999999998863

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.53  E-value=2e-15  Score=144.21  Aligned_cols=127  Identities=17%  Similarity=0.078  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      .+.++..+|.++.++|++++|++.|+++++++|+++  .....+|.+|.++|++++|+..|++++++.            
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------   70 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD------------   70 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------
Confidence            345567788888899999999999999999999743  455668899999999999999999998874            


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHH--HHHcCCHHHHHHHHH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLC--LIKRTRYNEARSVLE  216 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~--l~~~g~~~eA~~~~~  216 (297)
                                    |+++.+++++|.+|..+|++++|+.+|+++++++|++.. +.+++.+  +..+|++++|+..++
T Consensus        71 --------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           71 --------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                          356678899999999999999999999999999999887 8888888  888899999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.53  E-value=1.1e-14  Score=132.80  Aligned_cols=137  Identities=14%  Similarity=0.081  Sum_probs=88.2

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ---------------ESLDNVLIDLYKKCGKVEEQIEMLK  123 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~---------------~~l~~~L~~ly~~~g~~~eAi~~~~  123 (297)
                      .+..+..+..+|..+...|++++|+..|++++.+.|++..               ...++.+|.+|.++|++++|+..|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3445677889999999999999999999999999997421               0256678999999999999999999


Q ss_pred             HHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          124 RKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       124 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                      ++|++.                          |+++.+++++|.+|..+|++++|+.+|+++++++|++.. +.+|+.+.
T Consensus       255 ~al~~~--------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          255 IVLTEE--------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            999874                          356778999999999999999999999999999999988 88888884


Q ss_pred             -HHcCCHHHHHHHHHHHHhc
Q 022442          203 -IKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       203 -~~~g~~~eA~~~~~~al~~  221 (297)
                       ...+..+++...|++++..
T Consensus       309 ~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          309 EQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHhhCC
Confidence             4556788888999998886

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.53  E-value=1.3e-13  Score=105.24  Aligned_cols=124  Identities=8%  Similarity=0.064  Sum_probs=101.8

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      ..+.++..+|.++...|++++|+..|++++...|.++  .....+|.+|...|++++|+..|++++.+.|....      
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------   73 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE------   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT------
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch------
Confidence            4567899999999999999999999999999999753  45566899999999999999999999998652100      


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRT  206 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g  206 (297)
                             ..      +..+.++.++|.+|..+|++++|+.+|++++++.|+ +. ...++.++...+
T Consensus        74 -------~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           74 -------DY------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             -------CH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             -------hH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence                   00      001568999999999999999999999999999995 55 777887765543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.53  E-value=5.9e-14  Score=104.43  Aligned_cols=68  Identities=12%  Similarity=0.023  Sum_probs=33.8

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      +|+++.++..+|.++...|++++|+..+++++...|.+.  .....+|.+|...|++++|+..|++++++
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344444555555555555555555555555555555421  22333455555555555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=3.3e-13  Score=103.89  Aligned_cols=108  Identities=11%  Similarity=0.025  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ++++.+|.++...|++++|+..|++++...|++.. ......+|.+|...|++++|+..|+++++..|..          
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----------   72 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH----------   72 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----------
Confidence            34677788888888888888888888888876421 1344457788888888888888888887765411          


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                                   +..+.+++++|.+|..+|++++|+..|++++...|+++.
T Consensus        73 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           73 -------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             -------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             -------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence                         011557788888888888888888888888888887775

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=5e-13  Score=126.51  Aligned_cols=186  Identities=13%  Similarity=0.048  Sum_probs=107.8

Q ss_pred             CCcHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCcchHHH
Q 022442           28 GDGPYVRAKHAQLVQK---DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRGLCSKQSQES  100 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~----g~~~eAi~~~~~al~~~P~~~~~~  100 (297)
                      ++.+.+.++.++...|   ++++|+.+|++++..+|..+.++++||.+|...    +++++|+..|+++.   |+++  .
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~--~  249 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP--A  249 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST--H
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH--H
Confidence            3347777777777777   777788888888888777777777888877555    67788888887776   4432  2


Q ss_pred             HHHHHHHH-H--HHcCCHHHHHHHHHHHHHhhchhhhhc-CcchhHH----hhhh---hhHHHhcCCCcHHHHHHHHHHH
Q 022442          101 LDNVLIDL-Y--KKCGKVEEQIEMLKRKLRLIYQGEAFN-GKPTKTA----RSHG---KKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus       101 l~~~L~~l-y--~~~g~~~eAi~~~~~al~~~p~~~~~~-~~~~~~~----~~~~---~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      ..+.||.+ |  ...|++++|+..|+++++...+...++ +......    .+..   ..+...+ |.++.++++||.+|
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence            34446666 4  467788888888888776543222211 0000000    0000   0122233 55566666666555


Q ss_pred             HH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          170 MQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       170 ~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      ..    ..++++|+.+|++|.+  +.++. .++||.+|..    ..++++|..+|+++...
T Consensus       329 ~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             HCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence            55    2356666666666554  23444 5556665553    23566666666665553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.51  E-value=2e-13  Score=126.20  Aligned_cols=124  Identities=15%  Similarity=0.055  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHh----------------hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRG----------------LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----------------~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      +..+..+|..+...|++++|+..|++++.                ..|.  ...+++.+|.+|.++|++++|+..+++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            35688899999999999999999999988                4454  23456678999999999999999999999


Q ss_pred             HhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442          127 RLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       127 ~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~  205 (297)
                      ++.                          |+++.+++++|.+|..+|++++|+..|++|++++|++.. +..|+.++..+
T Consensus       301 ~~~--------------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          301 EID--------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             TTC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhC--------------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            874                          456778999999999999999999999999999999998 88999999999


Q ss_pred             CCHHHHHHH
Q 022442          206 TRYNEARSV  214 (297)
Q Consensus       206 g~~~eA~~~  214 (297)
                      ++++++...
T Consensus       355 ~~~~~a~k~  363 (370)
T 1ihg_A          355 KAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            988887643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=5e-13  Score=107.91  Aligned_cols=113  Identities=16%  Similarity=0.090  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      .....|..+.+.|++++|+..|++++.+.+...... ..       .......++|....++.++|.+|..+|++++|+.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILRE-KP-------GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS-CT-------TSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC-CC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            345578999999999999999999999843210000 00       0000012245667899999999999999999999


Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .|++|+.++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            99999999999998 999999999999999999999999998

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.51  E-value=2.2e-12  Score=116.40  Aligned_cols=180  Identities=3%  Similarity=-0.112  Sum_probs=138.0

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHC---CChHHHH
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQK--DPEAAIVLFWKAINAGDRVDSALKDMAVVM----KQL---DRSEEAI   83 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l----~~~---g~~~eAi   83 (297)
                      +.=+.+..+..+ |...++...=+.+...-|  ++++++.++.+++..+|++..+|+..+.++    ...   +++++++
T Consensus        51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL  130 (306)
T 3dra_A           51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF  130 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence            344555444444 544444433344444556  999999999999999999999999999999    777   8999999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE--EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~--eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                      +.+.+++..+|++.+  ..+..+.++...|+++  ++++.+.++++.+|                          .+..+
T Consensus       131 ~~~~~~l~~~pkny~--aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--------------------------~N~sA  182 (306)
T 3dra_A          131 DILEAMLSSDPKNHH--VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--------------------------KNNSA  182 (306)
T ss_dssp             HHHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--------------------------TCHHH
T ss_pred             HHHHHHHHhCCCCHH--HHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--------------------------CCHHH
Confidence            999999999998643  3334677889999999  99999999999854                          45567


Q ss_pred             HHHHHHHHHHCCC------hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH-HHHHHHHHHhc
Q 022442          162 LGNLAWAYMQKTN------FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE-ARSVLEDVLYG  221 (297)
Q Consensus       162 l~nLg~~y~~~g~------~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e-A~~~~~~al~~  221 (297)
                      +.+.+.++..+|+      ++++++++.+++.++|+|.. |+.++.++...|+..+ ....+++++..
T Consensus       183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  250 (306)
T 3dra_A          183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL  250 (306)
T ss_dssp             HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred             HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            8888888888777      78888888888888888887 8888888888887544 33455666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.51  E-value=4.1e-13  Score=105.76  Aligned_cols=139  Identities=17%  Similarity=0.076  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCc
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGK  138 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~  138 (297)
                      ..++..+|.++...|++++|+..+++++.+.|..    ........+|.+|...|++++|+..+++++++.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------   82 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence            4678899999999999999999999999876641    112355668999999999999999999999985411      


Q ss_pred             chhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHH
Q 022442          139 PTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEA  211 (297)
Q Consensus       139 ~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA  211 (297)
                              +..      +....++.++|.++..+|++++|+.+|++++++.+..      .. +.++|.++..+|++++|
T Consensus        83 --------~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           83 --------KDR------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             --------TCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             --------CCc------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence                    000      0124578999999999999999999999999874321      23 67899999999999999


Q ss_pred             HHHHHHHHhc
Q 022442          212 RSVLEDVLYG  221 (297)
Q Consensus       212 ~~~~~~al~~  221 (297)
                      +..+++++..
T Consensus       149 ~~~~~~a~~~  158 (164)
T 3ro3_A          149 MHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.51  E-value=1.8e-14  Score=137.61  Aligned_cols=130  Identities=12%  Similarity=0.007  Sum_probs=111.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      +..+...|++++|+.+|+++++.+|+++.++.++|.++..+|++++|++.++++++++|+++  ...+.+|.+|..+|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCH
Confidence            34456789999999999999999999999999999999999999999999999999999853  4556689999999999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH--HHHCCChHHHHHHHH----------
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA--YMQKTNFMAAEVVYQ----------  183 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~--y~~~g~~~eA~~~y~----------  183 (297)
                      ++|+..|++++++.|                          +++.++.++|.+  +..+|++++|+..|+          
T Consensus        91 ~eA~~~~~~al~~~p--------------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~  144 (477)
T 1wao_1           91 RAALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD  144 (477)
T ss_dssp             HHHHHHHHHHHHHST--------------------------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred             HHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence            999999999999854                          345578888888  899999999999999          


Q ss_pred             -HHHHhCCCcH
Q 022442          184 -KAQMIDPDAN  193 (297)
Q Consensus       184 -~Al~~~P~~~  193 (297)
                       ++++++|+..
T Consensus       145 ~~al~~~~~~~  155 (477)
T 1wao_1          145 IESMTIEDEYS  155 (477)
T ss_dssp             TSSCCCCTTCC
T ss_pred             hhhcccccccc
Confidence             9999888754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.49  E-value=2.5e-13  Score=100.95  Aligned_cols=102  Identities=14%  Similarity=0.018  Sum_probs=90.5

Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      +|+++  .....+|.++...|++++|+..|++++++.|                          +++.++.++|.+|..+
T Consensus         2 ~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~~a~~~~~~   53 (112)
T 2kck_A            2 VDQNP--EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--------------------------EESKYWLMKGKALYNL   53 (112)
T ss_dssp             CCSST--TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHT
T ss_pred             CCCcH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--------------------------CCHHHHHHHHHHHHHc
Confidence            45532  2344578899999999999999999999754                          4567899999999999


Q ss_pred             CChHHHHHHHHHHHHhCCC--cHH-HhHHHHHHHHc-CCHHHHHHHHHHHHhcC
Q 022442          173 TNFMAAEVVYQKAQMIDPD--ANK-ACNLGLCLIKR-TRYNEARSVLEDVLYGR  222 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P~--~~~-~~nLg~~l~~~-g~~~eA~~~~~~al~~~  222 (297)
                      |++++|+.+|+++++++|+  +.. +.++|.++..+ |++++|+..+++++...
T Consensus        54 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           54 ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             TCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             cCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            9999999999999999999  888 99999999999 99999999999999873

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=2.2e-12  Score=123.81  Aligned_cols=180  Identities=5%  Similarity=-0.047  Sum_probs=148.4

Q ss_pred             chhhhhhhhhc--CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           14 KKEDLFHVIHK--VPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        14 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      ...+.|....+  .|.....+...+.+....|++++|...|+++++.+|.++ .+|..+|.++.++|++++|+++|++++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44566644443  465555666777778889999999999999999999885 689999999999999999999999999


Q ss_pred             hhCCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           91 GLCSKQSQESLDNVLIDL-YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        91 ~~~P~~~~~~l~~~L~~l-y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      ...|......+.  .+.+ +...|++++|..+|+++++..|                          +++.++.++|.++
T Consensus       384 ~~~~~~~~~~~~--~a~~~~~~~~~~~~A~~~~e~al~~~p--------------------------~~~~~~~~~~~~~  435 (530)
T 2ooe_A          384 EDARTRHHVYVT--AALMEYYCSKDKSVAFKIFELGLKKYG--------------------------DIPEYVLAYIDYL  435 (530)
T ss_dssp             TCTTCCTHHHHH--HHHHHHHHTCCHHHHHHHHHHHHHHHT--------------------------TCHHHHHHHHHHH
T ss_pred             hccCCchHHHHH--HHHHHHHHcCChhHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHH
Confidence            998864332222  2222 4469999999999999999854                          5677899999999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+|++++|..+|++++...|.++    . |..........|+.+.+..+++++++.
T Consensus       436 ~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          436 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             TTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999877554    3 667788888999999999999999986

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=1.4e-12  Score=98.43  Aligned_cols=116  Identities=22%  Similarity=0.167  Sum_probs=102.9

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ..+...+..+...|++++|+.+|++++..+|....++..+|.++...|++++|+..+++++...|.+.  .....+|.+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHH
Confidence            35677788888999999999999999999999999999999999999999999999999999999753  3556689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                      ...|++++|+..+++++++.|                          +++.++.++|.++..+|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDP--------------------------NNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCC--------------------------CcHHHHHHHHHHHHhcc
Confidence            999999999999999998744                          56678899999987765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=9.5e-13  Score=128.35  Aligned_cols=159  Identities=9%  Similarity=-0.014  Sum_probs=140.0

Q ss_pred             HcCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           41 VQKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        41 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ..|+ .++|+.++.+++..+|++..+|+..+.++...|+          ++++++.+++++..+|++.+  +++.-+.++
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~--aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Confidence            4454 4568999999999999999999999999999999          99999999999999998543  444468888


Q ss_pred             HHcC--CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHH
Q 022442          110 KKCG--KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT-NFMAAEVVYQKAQ  186 (297)
Q Consensus       110 ~~~g--~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g-~~~eA~~~y~~Al  186 (297)
                      .+.|  ++++|++.+.++++++|                          .+..+|++.|+++..+| .++++++++.+++
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~--------------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I  171 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  171 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred             HHcccccHHHHHHHHHHHHhhcc--------------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            9999  77999999999999854                          56779999999999999 9999999999999


Q ss_pred             HhCCCcHH-HhHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCCcchh
Q 022442          187 MIDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYGRIPGCEDGR  230 (297)
Q Consensus       187 ~~~P~~~~-~~nLg~~l~~~--------------g~~~eA~~~~~~al~~~~~~~~~~~  230 (297)
                      +.+|++.. |.+.+.++..+              +++++|++.+.+++..   +|.+..
T Consensus       172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~---~P~~~s  227 (567)
T 1dce_A          172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQS  227 (567)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH---CSSCSH
T ss_pred             HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh---CCCCcc
Confidence            99999998 99999999885              6689999999999987   455444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.48  E-value=1.9e-12  Score=114.77  Aligned_cols=136  Identities=12%  Similarity=-0.001  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHCCChHHHHHHHHHHH---hhCCcch--HHHHH
Q 022442           34 RAKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFR---GLCSKQS--QESLD  102 (297)
Q Consensus        34 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~g~~~eAi~~~~~al---~~~P~~~--~~~l~  102 (297)
                      ..+.++...|++++|+..|++++...+..      ..++.++|.+|..+|++++|+..|++++   ...|++.  .....
T Consensus       120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~  199 (293)
T 2qfc_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence            34556677889999999999999864433      6689999999999999999999999998   4455422  11466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH-HHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA-EVV  181 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA-~~~  181 (297)
                      +.+|.+|..+|++++|+..+++++++.+...              .      ....+.+++++|.+|..+|++++| ..+
T Consensus       200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--------------~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~  259 (293)
T 2qfc_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRIN--------------S------MALIGQLYYQRGECLRKLEYEEAEIEDA  259 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------B------CSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--------------c------HHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            7799999999999999999999999853110              0      011246899999999999999999 888


Q ss_pred             HHHHHHhC
Q 022442          182 YQKAQMID  189 (297)
Q Consensus       182 y~~Al~~~  189 (297)
                      |++|+.+.
T Consensus       260 ~~~Al~~~  267 (293)
T 2qfc_A          260 YKKASFFF  267 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.48  E-value=9.1e-14  Score=131.91  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHH----HHHcCCChHHHHHHHHHHH------------HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHH
Q 022442           44 DPEAAIVLFWK----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLID  107 (297)
Q Consensus        44 ~~~~A~~~~~~----al~~~p~~~~a~~~Lg~~l------------~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~  107 (297)
                      .++.|+..+++    +|.++|..  ++.+.|...            ..++++++|+..++.++...|..  ......+|.
T Consensus       201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~--a~~~~~~G~  276 (457)
T 1kt0_A          201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEKGT  276 (457)
T ss_dssp             HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHH--HHHHHHHHH
Confidence            56777777776    77777764  344444322            24567788888888888887763  345566899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      +|.+.|++++|+..|++++++.|....+.           ......+++....++.|+|.+|..+|+|++|+.+|++|++
T Consensus       277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcccccCC-----------hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999999999999976321110           0000111222356899999999999999999999999999


Q ss_pred             hCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          188 IDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       188 ~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                      ++|++.. ++++|.+|..+|++++|+..|++++...+
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9999998 99999999999999999999999999843

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=7.5e-13  Score=102.90  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=94.2

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLI  106 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~  106 (297)
                      .....+...+..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++  .....+|
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHHHHHH
Confidence            34456888889999999999999999999999999999999999999999999999999999999999853  4556689


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhch
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~  131 (297)
                      .+|...|++++|+..|++++++.|.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            9999999999999999999999774

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.47  E-value=3.8e-12  Score=115.85  Aligned_cols=171  Identities=16%  Similarity=0.038  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc---hHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---SQES  100 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~---~~~~  100 (297)
                      +...+.++...|++++|+..|++++...        |....++.++|.++..+|++++|+..+++++...|..   ....
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            4455677788899999999999988753        4456678889999999999999999999998887741   1123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ....+|.++...|++++|+..+++++.+.+....    .        ...       .......++.++...|++++|+.
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~----~--------~~~-------~~~~~~~~~~~~~~~g~~~~A~~  236 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY----H--------SDW-------ISNANKVRVIYWQMTGDKAAAAN  236 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC----C--------HHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc----c--------hhH-------HHHHHHHHHHHHHHCCCHHHHHH
Confidence            4556888999999999999999999887431000    0        000       00011234455777777777777


Q ss_pred             HHHHHHHhCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++++...|...    . +.++|.++..+|++++|...+++++..
T Consensus       237 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          237 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777665431    2 456777777777777777777777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=4.1e-12  Score=94.98  Aligned_cols=95  Identities=19%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ....+|.++...|++++|+..|++++...|                          +++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~   59 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--------------------------HNHVLYSNRSAAYAKKGDYQKAYE   59 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------------------CcHHHHHHHHHHHHhhccHHHHHH
Confidence            445578999999999999999999998744                          466789999999999999999999


Q ss_pred             HHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .|+++++++|+++. +.++|.++..+|++++|...+++++..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           60 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            99999999999998 999999999999999999999999997

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.46  E-value=8.4e-12  Score=112.29  Aligned_cols=163  Identities=9%  Similarity=-0.048  Sum_probs=125.9

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-----chHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQE   99 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-----~~~~   99 (297)
                      +++.+...++.++...|++++|+.++.+.+..+|  ...+++..++.++.++||.+.|.+.++++.+.+|+     +. .
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~-~  176 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE-M  176 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-H
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-H
Confidence            3444556667777788888888888888888886  78888888888888888988888888888888882     21 1


Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC--cHHHHHHHHHHHHHCCCh
Q 022442          100 SLDNVLIDLYKKCG--KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE--TSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus       100 ~l~~~L~~ly~~~g--~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~--~~~~l~nLg~~y~~~g~~  175 (297)
                      .+...-+++....|  ++.+|..+|+++....|                          +  ....+.|   +++++|++
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--------------------------~~~~~~lLln---~~~~~g~~  227 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTFP--------------------------TWKTQLGLLN---LHLQQRNI  227 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--------------------------SHHHHHHHHH---HHHHHTCH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--------------------------CcccHHHHHH---HHHHcCCH
Confidence            12222244455555  88888888888766533                          2  1234555   89999999


Q ss_pred             HHHHHHHHHHHHh----------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQMI----------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~~----------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++|+..++++++.          +|+++. ..|+..+...+|+  +|.++++++...
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            9999999988887          588998 7799999999998  899999999997

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.46  E-value=1.5e-12  Score=102.53  Aligned_cols=141  Identities=15%  Similarity=0.065  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQES  100 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~  100 (297)
                      .+...+.++...|++++|+.++++++...+...      .++..+|.++..+|++++|+..+++++.+.+..    ....
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            456677888899999999999999998755432      488999999999999999999999998875531    1223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ....+|.++...|++++|+..+++++++.+..              +..      +....++.++|.+|..+|++++|+.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~------~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------KDR------IGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCH------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------cch------HhHHHHHHHHHHHHHHccCHHHHHH
Confidence            45668999999999999999999999984310              000      0124578999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 022442          181 VYQKAQMIDPD  191 (297)
Q Consensus       181 ~y~~Al~~~P~  191 (297)
                      +|++++++...
T Consensus       151 ~~~~a~~~~~~  161 (164)
T 3ro3_A          151 FAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999987554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.46  E-value=1.7e-13  Score=105.00  Aligned_cols=91  Identities=10%  Similarity=0.015  Sum_probs=45.6

Q ss_pred             CCChHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHH
Q 022442           76 LDRSEEAIEAIKSFRGLC---SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQV  152 (297)
Q Consensus        76 ~g~~~eAi~~~~~al~~~---P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  152 (297)
                      +|++++|+..|++++.++   |++  ......+|.+|...|++++|+..|++++++.                       
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------   57 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------   57 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence            355555555555555552   331  2233345555555555555555555555542                       


Q ss_pred             hcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          153 SVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       153 ~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                         |+++.++.++|.+|..+|++++|+.+|+++++..|+++.
T Consensus        58 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           58 ---PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             ---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence               233445555555555555555555555555555555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.45  E-value=1.1e-13  Score=126.23  Aligned_cols=135  Identities=11%  Similarity=0.031  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-----------------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      +...+..+...|++++|+..|++++...|++.                 .++.++|.++..+|++++|+..|++++.++|
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  261 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE  261 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            55556677789999999999999999999987                 4899999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCC
Q 022442           95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKT  173 (297)
Q Consensus        95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g  173 (297)
                      ++.  ..++.+|.+|..+|++++|+..|++++++.|                          +++.++.+|+.+. ...+
T Consensus       262 ~~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--------------------------~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          262 KNP--KALFRRGKAKAELGQMDSARDDFRKAQKYAP--------------------------DDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             TCH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------------
T ss_pred             CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHHHH
Confidence            853  4566689999999999999999999998854                          4566888899884 5668


Q ss_pred             ChHHHHHHHHHHHHhCCCcHH
Q 022442          174 NFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       174 ~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      ..+++...|++++...|+++.
T Consensus       314 ~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          314 LYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHhhCCCCCCCC
Confidence            889999999999999998864

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.45  E-value=7.5e-12  Score=114.53  Aligned_cols=157  Identities=11%  Similarity=0.018  Sum_probs=138.1

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-C-CHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-G-KVEEQI  119 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g-~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-g-~~~eAi  119 (297)
                      +..++|+.++.++|..+|++..+|+..+.++...| .++++++.++.++..+|++.  .+.+..+.++... + ++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhcCCChHHHH
Confidence            45578999999999999999999999999999999 59999999999999999853  3444467777777 7 999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChH--------HHHHHHHHHHHhCCC
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFM--------AAEVVYQKAQMIDPD  191 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~--------eA~~~y~~Al~~~P~  191 (297)
                      +++.++++++                          |.+..+++..++++...|+++        ++++++.++++.+|.
T Consensus       146 ~~~~k~L~~d--------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          146 EYIHGSLLPD--------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             HHHHHHTSSC--------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            9999999874                          456779999999999999998        999999999999999


Q ss_pred             cHH-HhHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCCcchh
Q 022442          192 ANK-ACNLGLCLIKRTR-------YNEARSVLEDVLYGRIPGCEDGR  230 (297)
Q Consensus       192 ~~~-~~nLg~~l~~~g~-------~~eA~~~~~~al~~~~~~~~~~~  230 (297)
                      |.. |.+.+.++...|+       +++++..+.+++..   +|.+..
T Consensus       200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~S  243 (349)
T 3q7a_A          200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVS  243 (349)
T ss_dssp             CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHH
T ss_pred             CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHH
Confidence            998 9999999999997       79999999999987   455444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.45  E-value=3.6e-12  Score=97.92  Aligned_cols=96  Identities=23%  Similarity=0.190  Sum_probs=85.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..+|.++...|++++|+..|+++++..|..                       +..+.+++++|.+|..+|++++|+.+|
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~   62 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----------------------VYTPNALYWLGESYYATRNFQLAEAQF   62 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----------------------TTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------------------cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            347888999999999999999999986521                       112368999999999999999999999


Q ss_pred             HHHHHhCCCc---HH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDA---NK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~---~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++..+|++   +. ++++|.++..+|++++|+..|++++..
T Consensus        63 ~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           63 RDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999   77 889999999999999999999999987

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.44  E-value=1.9e-11  Score=111.27  Aligned_cols=153  Identities=8%  Similarity=-0.026  Sum_probs=135.4

Q ss_pred             HcCCHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           41 VQKDPE-AAIVLFWKAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        41 ~~g~~~-~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~----------~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ..|++. +|+.++.++|..+|.+..+|+.-+.++...|+          +++++..+..++..+|++..  +.+.-+.++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--TWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Confidence            566665 69999999999999999999999999988877          68999999999999998543  444467788


Q ss_pred             HHcCC--HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHH
Q 022442          110 KKCGK--VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVYQKAQ  186 (297)
Q Consensus       110 ~~~g~--~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~-~~eA~~~y~~Al  186 (297)
                      ...|+  +++++.++.++++++|                          .+..+|++.++++...|+ +++++.++.+++
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dp--------------------------rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADE--------------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hccCcccHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            88884  8999999999999854                          567799999999999999 599999999999


Q ss_pred             HhCCCcHH-HhHHHHHHHHc--------------CCHHHHHHHHHHHHhc
Q 022442          187 MIDPDANK-ACNLGLCLIKR--------------TRYNEARSVLEDVLYG  221 (297)
Q Consensus       187 ~~~P~~~~-~~nLg~~l~~~--------------g~~~eA~~~~~~al~~  221 (297)
                      +.+|.|.. |.+++.++...              +.+++++..+.+++..
T Consensus       173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~  222 (331)
T 3dss_A          173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  222 (331)
T ss_dssp             HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence            99999998 99999999887              5689999999999987

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=2.5e-13  Score=104.00  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=75.5

Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      .+|++++|+..|++++++.+.                       +|+++.++.+||.+|..+|++++|+.+|+++++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   58 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP   58 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            468999999999999998310                       123567899999999999999999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          191 DANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++. +.++|.++..+|++++|+..+++++..
T Consensus        59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9998 999999999999999999999999987

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.5e-12  Score=117.33  Aligned_cols=166  Identities=9%  Similarity=0.061  Sum_probs=134.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--   96 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--   96 (297)
                      +.-+...|++++|+..|.++++..|..                 ..++.+||.+|..+|++++|++.+..++...+..  
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            444568999999999999999988764                 3468999999999999999999999988765531  


Q ss_pred             --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC
Q 022442           97 --SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN  174 (297)
Q Consensus        97 --~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~  174 (297)
                        ....+.+.++.++...|++++|+.++++++.+.+..              ..      .+..+.++.+||.+|...|+
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~la~~~~~~g~  150 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------------KR------VFLKHSLSIKLATLHYQKKQ  150 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------------SC------CSSHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------Cc------cHHHHHHHHHHHHHHHHccC
Confidence              122345668888889999999999999999874311              00      12235688999999999999


Q ss_pred             hHHHHHHHHHHHHhC------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          175 FMAAEVVYQKAQMID------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       175 ~~eA~~~y~~Al~~~------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      |++|+.++++++..-      |.... +.++|.+|..+|++++|..++++++..
T Consensus       151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            999999999998762      22234 678999999999999999999999865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.42  E-value=1.6e-12  Score=115.59  Aligned_cols=137  Identities=19%  Similarity=0.030  Sum_probs=114.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKV  115 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~  115 (297)
                      ..++...|++++|.+.|+..+..+|... +++.+|.++.+.|++++|+..|+.+....++......+..||.++..+|++
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence            4456689999999999999999999988 999999999999999999999998776532211124677799999999999


Q ss_pred             HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          116 EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE-TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       116 ~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~-~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      ++|+..|++++...                        .+|. .+++++++|.++.++|+.++|..+|++++..+|+ ..
T Consensus       188 ~eAl~~l~~a~~g~------------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          188 TEAERRLTEANDSP------------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             HHHHHHHHHHHTST------------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             HHHHHHHHHHhcCC------------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            99999999998642                        0122 4568999999999999999999999999999999 65


Q ss_pred             -HhHH
Q 022442          195 -ACNL  198 (297)
Q Consensus       195 -~~nL  198 (297)
                       +..|
T Consensus       243 ~~~aL  247 (282)
T 4f3v_A          243 VAAAL  247 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence             4444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.42  E-value=3.7e-12  Score=112.90  Aligned_cols=135  Identities=11%  Similarity=-0.008  Sum_probs=106.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---Cc--chHHHHHH
Q 022442           35 AKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SK--QSQESLDN  103 (297)
Q Consensus        35 ~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~--~~~~~l~~  103 (297)
                      .+.++...|++++|+.+|++++...+..      ..++.++|.+|..+|++++|+..|++++...   |.  .....+.+
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            4556667789999999999999954332      3479999999999999999999999998532   11  11234567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC-hHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-FMAAEVVY  182 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~-~~eA~~~y  182 (297)
                      .+|.+|..+|++++|+..+++++++.+...              .      .+..+.++.++|.+|..+|+ +++|+.+|
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--------------~------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRIN--------------S------MALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------B------CTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--------------c------HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            799999999999999999999999854210              0      01235689999999999995 69999999


Q ss_pred             HHHHHhC
Q 022442          183 QKAQMID  189 (297)
Q Consensus       183 ~~Al~~~  189 (297)
                      ++|+.+.
T Consensus       261 ~~Al~i~  267 (293)
T 3u3w_A          261 KKASFFF  267 (293)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.40  E-value=3.1e-11  Score=109.82  Aligned_cols=179  Identities=8%  Similarity=-0.017  Sum_probs=139.6

Q ss_pred             hhhhhhhhhcCCCCCcHHHHHHHHHH-HcCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--hHH
Q 022442           15 KEDLFHVIHKVPAGDGPYVRAKHAQL-VQKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEE   81 (297)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~----------~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~--~~e   81 (297)
                      .=+.+..+..+.|.....+......+ .-++          +++++.++..++..+|.+..+|+..+.++...|+  +++
T Consensus        49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~  128 (331)
T 3dss_A           49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR  128 (331)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence            34555555555445554444433222 2222          6889999999999999999999999999999995  899


Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH
Q 022442           82 AIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK-VEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR  160 (297)
Q Consensus        82 Ai~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~-~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~  160 (297)
                      +++.+.+++..+|.+.+  ..+.-+.++...|+ ++++++.+.++++.+|                          .+..
T Consensus       129 EL~~~~k~l~~dprNy~--AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--------------------------~N~S  180 (331)
T 3dss_A          129 ELELCARFLEADERNFH--CWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------------------------SNYS  180 (331)
T ss_dssp             HHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--------------------------CCHH
T ss_pred             HHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--------------------------CCHH
Confidence            99999999999998543  33346777888998 6999999999998754                          5677


Q ss_pred             HHHHHHHHHHHC--------------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc-----------CCHHHHHHH
Q 022442          161 LLGNLAWAYMQK--------------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR-----------TRYNEARSV  214 (297)
Q Consensus       161 ~l~nLg~~y~~~--------------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~-----------g~~~eA~~~  214 (297)
                      +++++|.++..+              +.++++++++.+++.++|+|.. |+-+..++...           +.+++++..
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~  260 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES  260 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence            899999998877              5689999999999999999998 76554444444           357899999


Q ss_pred             HHHHHhc
Q 022442          215 LEDVLYG  221 (297)
Q Consensus       215 ~~~al~~  221 (297)
                      ++++++.
T Consensus       261 ~~elle~  267 (331)
T 3dss_A          261 CKELQEL  267 (331)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999987

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.9e-12  Score=98.09  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=91.4

Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHH
Q 022442           27 AGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDN  103 (297)
Q Consensus        27 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~  103 (297)
                      .....+...+..+...|++++|+.+|++++..+|+.   ..++.++|.++..+|++++|+..+++++...|++.  ....
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV--KALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH--HHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH--HHHH
Confidence            344467777888899999999999999999999998   89999999999999999999999999999999853  4556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      .+|.+|...|++++|+..|++++++.|
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=2.2e-12  Score=125.75  Aligned_cols=166  Identities=8%  Similarity=-0.012  Sum_probs=137.1

Q ss_pred             hhhh-hhhcCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--ChHHHH
Q 022442           17 DLFH-VIHKVPAGDGPYVRAKHAQLVQKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD--RSEEAI   83 (297)
Q Consensus        17 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g--~~~eAi   83 (297)
                      +.+. ++...|...+++..=+.+...-|+          +++++.++.++++.+|++..+|+..+.++...|  ++++++
T Consensus        50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence            4453 344445554554444444444455          999999999999999999999999999999999  669999


Q ss_pred             HHHHHHHhhCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHH
Q 022442           84 EAIKSFRGLCSKQSQESLDNVLIDLYKKCG-KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLL  162 (297)
Q Consensus        84 ~~~~~al~~~P~~~~~~l~~~L~~ly~~~g-~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l  162 (297)
                      +.+.++++.+|++.  ..++..+.++...| .++++++.+.++++.+                          |++..+|
T Consensus       130 ~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--------------------------p~n~saW  181 (567)
T 1dce_A          130 ELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--------------------------FSNYSSW  181 (567)
T ss_dssp             HHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--------------------------CCCHHHH
T ss_pred             HHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--------------------------CCCccHH
Confidence            99999999999853  34444678888999 9999999999998874                          4677899


Q ss_pred             HHHHHHHHHC--------------CChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH
Q 022442          163 GNLAWAYMQK--------------TNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE  210 (297)
Q Consensus       163 ~nLg~~y~~~--------------g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e  210 (297)
                      ++.|.++..+              +++++|++++.+|+.++|++.. |+.++.++...|++++
T Consensus       182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            9999999885              6689999999999999999998 9999999999998766

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.38  E-value=1e-12  Score=106.72  Aligned_cols=86  Identities=12%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh----------HHHH
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF----------MAAE  179 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~----------~eA~  179 (297)
                      .+.+++++|+..++++++++                          |+++.+++++|.++.+++++          ++|+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--------------------------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi   66 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI   66 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH
Confidence            45678999999999999985                          46788999999999999886          5999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcC-----------CHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRT-----------RYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g-----------~~~eA~~~~~~al~~  221 (297)
                      ..|++||+++|++.. +++||.+|..+|           ++++|+.+|+++++.
T Consensus        67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            999999999999998 999999999885           899999999999998

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=2.8e-12  Score=97.77  Aligned_cols=101  Identities=13%  Similarity=0.014  Sum_probs=89.5

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch--H---HHHHHH
Q 022442           30 GPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS--Q---ESLDNV  104 (297)
Q Consensus        30 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~--~---~~l~~~  104 (297)
                      ..+...+..+...|++++|+.+|++++..+|.++.++.++|.++..+|++++|+..+++++...|.+.  .   ......
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            35677788889999999999999999999999999999999999999999999999999999987530  0   345567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      +|.+|...|++++|+..|++++++.|
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            89999999999999999999999854

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.36  E-value=7.4e-12  Score=115.71  Aligned_cols=122  Identities=9%  Similarity=0.019  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----------------cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      +...+..+...|++++|+..|+++++                .+|....++.++|.++..+|++++|+..+++++.++|+
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            56667788899999999999999999                78888999999999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442           96 QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus        96 ~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~  175 (297)
                      ++  ..++.+|.+|..+|++++|+..|++++++.|                          ++..++..++.++..++++
T Consensus       306 ~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--------------------------~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          306 NT--KALYRRAQGWQGLKEYDQALADLKKAQEIAP--------------------------EDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred             hH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHHHHH
Confidence            53  4566689999999999999999999999854                          5667889999999999999


Q ss_pred             HHHHHH
Q 022442          176 MAAEVV  181 (297)
Q Consensus       176 ~eA~~~  181 (297)
                      +++...
T Consensus       358 ~~a~k~  363 (370)
T 1ihg_A          358 KDKEKA  363 (370)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            888754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.34  E-value=2.6e-11  Score=116.10  Aligned_cols=135  Identities=7%  Similarity=-0.040  Sum_probs=107.6

Q ss_pred             HHHHHHHCCChHHHHHHHHHHHhh-----CCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           69 MAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        69 Lg~~l~~~g~~~eAi~~~~~al~~-----~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      .+..+..+|++++|+..+++++++     .|+++. ....++||.+|..+|+|++|+.+++++|++..         ...
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~l  385 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM---------KLY  385 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH---------HHc
Confidence            445578899999999999998764     444322 24457799999999999999999999999842         011


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH----HhHHHHHHHHcCCHHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKRTRYNEARS  213 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~----~~nLg~~l~~~g~~~eA~~  213 (297)
                      ...|         |+.+..++|||.+|..+|++++|+.+|++|+++     .|+++.    ..+|+.++.++|++++|..
T Consensus       386 G~~H---------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          386 HHNN---------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             CTTC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111         233457899999999999999999999999985     688874    4579999999999999999


Q ss_pred             HHHHHHhc
Q 022442          214 VLEDVLYG  221 (297)
Q Consensus       214 ~~~~al~~  221 (297)
                      .|+++.+.
T Consensus       457 ~~~~~~~~  464 (490)
T 3n71_A          457 MYHKMREA  464 (490)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.32  E-value=3.2e-11  Score=114.02  Aligned_cols=184  Identities=13%  Similarity=0.035  Sum_probs=133.4

Q ss_pred             CCcHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCcchHHH
Q 022442           28 GDGPYVRAKHAQLVQK----DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQES  100 (297)
Q Consensus        28 ~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~~~P~~~~~~  100 (297)
                      ...+.+.++.++...+    +.+.+..+++.+...+|.   ++++||.+|...|   ++++|+..|+++...+|..+.  
T Consensus       140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~--  214 (452)
T 3e4b_A          140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ--  214 (452)
T ss_dssp             CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH--
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH--
Confidence            3456666666666555    445566666666666665   8999999999999   999999999999999987442  


Q ss_pred             HHHHHHHHHHHc----CCHHHHHHHHHHHHHhhchhhhhc-Ccc-h--hHHhhhh---hhHHHhcCCCcHHHHHHHHHHH
Q 022442          101 LDNVLIDLYKKC----GKVEEQIEMLKRKLRLIYQGEAFN-GKP-T--KTARSHG---KKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus       101 l~~~L~~ly~~~----g~~~eAi~~~~~al~~~p~~~~~~-~~~-~--~~~~~~~---~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                      ..+.||.+|...    +++++|+..|+++. ...+...++ +.. .  ....+..   ..+...++++++.++++||.+|
T Consensus       215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y  293 (452)
T 3e4b_A          215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLY  293 (452)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334578887665    79999999999988 222222221 111 0  0000111   1133466788999999999999


Q ss_pred             HHCC-----ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          170 MQKT-----NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       170 ~~~g-----~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      . .|     ++++|+.+|++|.   |+++. .++||.+|..    ..++++|+.+|+++...
T Consensus       294 ~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          294 Y-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             H-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             H-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            8 55     9999999999998   88888 8999998887    34999999999999885

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.30  E-value=1.1e-10  Score=106.72  Aligned_cols=167  Identities=12%  Similarity=0.030  Sum_probs=134.7

Q ss_pred             chhhhhhhhhcC-CCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-C-ChHHHHHHHHHH
Q 022442           14 KKEDLFHVIHKV-PAGDGPYVRAKHAQLVQK-DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSF   89 (297)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~-g-~~~eAi~~~~~a   89 (297)
                      +.=+.+..+..+ |...++...=+.+...-| ++++++.++.+++..+|++..+|+..+.++... + +++++++.+.++
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  151 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS  151 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            344445444444 544444333334444456 699999999999999999999999999999998 8 999999999999


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHH
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVE--------EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL  161 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~--------eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~  161 (297)
                      +..+|++..  ..+..+.++...|+++        ++++.+.++++.+                          |.+..+
T Consensus       152 L~~dpkNy~--AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------------------p~N~SA  203 (349)
T 3q7a_A          152 LLPDPKNYH--TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------------------GRNNSA  203 (349)
T ss_dssp             TSSCTTCHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------------------TTCHHH
T ss_pred             HHhCCCCHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------------------CCCHHH
Confidence            999998532  3333567777888887        9999999988874                          456789


Q ss_pred             HHHHHHHHHHCCC-------hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442          162 LGNLAWAYMQKTN-------FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  208 (297)
Q Consensus       162 l~nLg~~y~~~g~-------~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~  208 (297)
                      +++.|.++..+++       ++++++++++++.++|+|.. |+.+..++...|+-
T Consensus       204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999997       79999999999999999998 99999999888875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.9e-12  Score=96.67  Aligned_cols=91  Identities=13%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ....+|.++...|++++|+..|++++++.|                          +++.++.++|.+|..+|++++|+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------------~~~~~~~~lg~~~~~~g~~~~A~~   59 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP--------------------------QNPVGYSNKAMALIKLGEYTQAIQ   59 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHhcCHHHHHH
Confidence            445588899999999999999999998744                          566789999999999999999999


Q ss_pred             HHHHHHHhCCCc------HH-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          181 VYQKAQMIDPDA------NK-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       181 ~y~~Al~~~P~~------~~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      .|+++++++|++      .. +.++|.++..+|++++|+..+++
T Consensus        60 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           60 MCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998      66 78889999988888777655544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.28  E-value=1.5e-11  Score=93.27  Aligned_cols=79  Identities=24%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-H
Q 022442          117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A  195 (297)
Q Consensus       117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~  195 (297)
                      +|+..|+++++..                          |+++.+++++|.+|..+|++++|+.+|+++++++|++.. +
T Consensus         3 ~a~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   56 (115)
T 2kat_A            3 AITERLEAMLAQG--------------------------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAW   56 (115)
T ss_dssp             CHHHHHHHHHTTT--------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHH
Confidence            5677778877764                          567789999999999999999999999999999999998 9


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          196 CNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       196 ~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++||.+|..+|++++|+..|++++..
T Consensus        57 ~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           57 KWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.27  E-value=2.2e-11  Score=90.77  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       155 ~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|+++.+++++|.+|..+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5889999999999999999999999999999999999998 999999999999999999999999986

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=4.7e-11  Score=90.52  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      +|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++.  ..+..+|.+|...|++++|+..|++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999853  355668999999999999999999999


Q ss_pred             Hhhc
Q 022442          127 RLIY  130 (297)
Q Consensus       127 ~~~p  130 (297)
                      ++.|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            9876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1.6e-10  Score=82.96  Aligned_cols=81  Identities=30%  Similarity=0.313  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .....+|.++...|++++|+..|++++++.|                          +++.++.++|.+|..+|++++|+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~A~   63 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------NNAEAWYNLGNAYYKQGDYDEAI   63 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHHhhHHHHH
Confidence            4455688999999999999999999998743                          45678999999999999999999


Q ss_pred             HHHHHHHHhCCCcHH-HhHHHHHHHHcC
Q 022442          180 VVYQKAQMIDPDANK-ACNLGLCLIKRT  206 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~-~~nLg~~l~~~g  206 (297)
                      .+|+++++++|+++. +.++|.++..+|
T Consensus        64 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           64 EYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            999999999999998 889999988765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.23  E-value=2e-10  Score=110.01  Aligned_cols=133  Identities=16%  Similarity=0.047  Sum_probs=104.9

Q ss_pred             HHHcCCHHHHHHHHHHHHH-----cCCCh---HHHHHHHHHHHHHCCChHHHHHHHHHHHhh-----CCcchHH-HHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRGL-----CSKQSQE-SLDNV  104 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~-----~~p~~---~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~-----~P~~~~~-~l~~~  104 (297)
                      +..+|++++|+.+|++++.     ++|++   ..++.+||.+|..+|++++|+..+++++..     .|+++.. ...+.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3468999999999999997     45555   456889999999999999999999998754     4554322 34567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      ||.+|..+|++++|+..|++|+++..         ...+..|+         ....+..+|+.++.+++++.+|+..|++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~---------~~lG~~Hp---------~~~~~~~~l~~~~~e~~~~~~ae~~~~~  460 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILL---------VTHGPSHP---------ITKDLEAMRMQTEMELRMFRQNEFMYHK  460 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH---------HHTCTTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH---------HHhCCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999842         01111221         2345678999999999999999999999


Q ss_pred             HHHhC
Q 022442          185 AQMID  189 (297)
Q Consensus       185 Al~~~  189 (297)
                      +.+-.
T Consensus       461 ~~~~~  465 (490)
T 3n71_A          461 MREAA  465 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97644

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=3.7e-10  Score=101.58  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 022442           48 AIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLR  127 (297)
Q Consensus        48 A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~  127 (297)
                      |+..+++.+..++....++..+|.++...|++++|+..+.+.+..+|..........++.+|.++||.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78899988887666677788999999999999999999999999887211345566688999999999999999999877


Q ss_pred             hhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH--HHHHHHCC--ChHHHHHHHHHHHHhCCC--cHH-HhHHHH
Q 022442          128 LIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL--AWAYMQKT--NFMAAEVVYQKAQMIDPD--ANK-ACNLGL  200 (297)
Q Consensus       128 ~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL--g~~y~~~g--~~~eA~~~y~~Al~~~P~--~~~-~~nLg~  200 (297)
                      ..|+..+.                      ...++.+|  ||+....|  ++.+|..+|+++.+..|+  .+. ++|   
T Consensus       165 ~~~d~~~~----------------------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---  219 (310)
T 3mv2_B          165 AIEDTVSG----------------------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---  219 (310)
T ss_dssp             HSCHHHHH----------------------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred             cCcccccc----------------------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence            74410000                      11244555  55566666  999999999999998888  333 445   


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 022442          201 CLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       201 ~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++.+|++++|...++.++..
T Consensus       220 ~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          220 LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            899999999999999987764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.21  E-value=7.3e-10  Score=115.50  Aligned_cols=63  Identities=21%  Similarity=0.081  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-------------------------CcHH-HhHHHHHHHHcCCHHHHH
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-------------------------DANK-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-------------------------~~~~-~~nLg~~l~~~g~~~eA~  212 (297)
                      +..|..+|.+|..+|++++|++++++|...++                         .+++ ...++..|...|.+++|+
T Consensus      1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence            35678899999999999999999999865544                         1333 457788999999999999


Q ss_pred             HHHHHHHhc
Q 022442          213 SVLEDVLYG  221 (297)
Q Consensus       213 ~~~~~al~~  221 (297)
                      .+++.++..
T Consensus      1301 ~LlE~aL~L 1309 (1630)
T 1xi4_A         1301 TMLEAALGL 1309 (1630)
T ss_pred             HHHHHHhcc
Confidence            999999886

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.19  E-value=6.4e-10  Score=115.89  Aligned_cols=178  Identities=14%  Similarity=0.108  Sum_probs=127.9

Q ss_pred             hhhhhhhhcCCCCCcHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           16 EDLFHVIHKVPAGDGPYVRAKHAQL-VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      +|+|..+.+..    -+..+..+++ .-|++++|+++++++     +.+.+|..+|.++...|++++|++.|.++  -+|
T Consensus      1066 EEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A         1066 EEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence            56666666663    1222222222 567888888888754     56889999999999999999999999886  222


Q ss_pred             cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchh-----hhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH
Q 022442           95 KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQG-----EAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY  169 (297)
Q Consensus        95 ~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y  169 (297)
                           ..+..++..+.+.|++++|++.|..+.+..++.     .++.  ..+.  .....+.--++..+...+.++|..+
T Consensus      1135 -----say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa--YAKl--~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A         1135 -----SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA--LAKT--NRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH--HHhh--cCHHHHHHHHhCCCHHHHHHHHHHH
Confidence                 233347889999999999999999999876432     1111  0000  0001111122333445667899999


Q ss_pred             HHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          170 MQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       170 ~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      ...|+|++|..+|.+|       ..|..+|.+|.++|++++|++.++++..
T Consensus      1206 e~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1206 YDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            9999999999999996       2499999999999999999999999854

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.18  E-value=2.2e-11  Score=90.77  Aligned_cols=101  Identities=15%  Similarity=0.026  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchh
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTK  141 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~  141 (297)
                      .+.++..+|.++...|++++|+..|++++.++|+++  .....+|.+|...|++++|+..|++++++.|.....      
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV------   74 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH------
Confidence            456788899999999999999999999999999753  455568889999999999999999999886521000      


Q ss_pred             HHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          142 TARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       142 ~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                             .       ....++.++|.++..+|++++|+..|++
T Consensus        75 -------~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           75 -------A-------IRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             -------H-------HHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             -------H-------HHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence                   0       0145788999999999998888776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.6e-10  Score=106.84  Aligned_cols=171  Identities=9%  Similarity=0.008  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQES  100 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~  100 (297)
                      ++..++.++...|++++|+.+|.+++...+...      .+...+|.++...|++++|+..++.++...+.    .-...
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            367778889999999999999999998654432      34567899999999999999999998876542    11235


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      +...||.+|...|++++|+.++++++......              .      -++....++.++|.+|..+|++++|..
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKL--------------D------DKPSLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--------------S------CSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--------------c------cchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence            66779999999999999999999998864210              0      012245689999999999999999999


Q ss_pred             HHHHHHHhCCC---cH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPD---AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~---~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|++++.+.|.   ..    . +..+|.++...|++++|...|.+++..
T Consensus       197 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          197 SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999987532   21    2 457899999999999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.18  E-value=5e-12  Score=118.67  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      ....++..++..|++++|+..|.++     .++.++..++..+...|++++|+..++.+++..++   ..+...|+.+|.
T Consensus        34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~---~~i~~~Li~~Y~  105 (449)
T 1b89_A           34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE---SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc---chhHHHHHHHHH
Confidence            4444444444455555555555432     22334444455555555555555544444443222   122333444444


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP  190 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P  190 (297)
                      +.|+++++++.++.                               | +..++.++|..|...|+|++|..+|.++     
T Consensus       106 Klg~l~e~e~f~~~-------------------------------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A          106 KTNRLAELEEFING-------------------------------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ---CHHHHTTTTTC-------------------------------C-----------------CTTTHHHHHHHT-----
T ss_pred             HhCCHHHHHHHHcC-------------------------------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            55555554443321                               2 2236777777777777777777777766     


Q ss_pred             CcHHHhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          191 DANKACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       191 ~~~~~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                        ..+..||.||.++|++++|++.++++
T Consensus       149 --~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          149 --SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence              12777777777777777777777777

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.17  E-value=5.7e-10  Score=88.31  Aligned_cols=111  Identities=16%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----cCCHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVEE  117 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~g~~~e  117 (297)
                      .+|+++|+.+|+++.+.++..+  .  ||.+|...+..++|+..|+++.+....    ...+.||.+|..    .+++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHHH
Confidence            3567788888888887764443  3  888888777888888888887776432    344457777777    778888


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHh
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~  188 (297)
                      |+..|+++.+.                            .++.+.++||.+|..    .+++++|+.+|++|.+.
T Consensus        80 A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           80 AAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            88888887765                            245577788888887    78888888888888776

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.13  E-value=6.2e-10  Score=79.79  Aligned_cols=85  Identities=21%  Similarity=0.150  Sum_probs=67.7

Q ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           61 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        61 ~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      ..+.++..+|.++...|++++|+..|++++..+|++.  .....+|.+|...|++++|+..|++++++.|          
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----------   74 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------   74 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----------
Confidence            4567888889999999999999999999888888743  3455578888889999999999888888743          


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCC
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g  173 (297)
                                      +++.++.++|.++..+|
T Consensus        75 ----------------~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           75 ----------------NNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHC
T ss_pred             ----------------CCHHHHHHHHHHHHhcC
Confidence                            45667888888887654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.07  E-value=2.8e-09  Score=84.24  Aligned_cols=109  Identities=16%  Similarity=0.043  Sum_probs=96.7

Q ss_pred             CChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCC
Q 022442           77 DRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQ  156 (297)
Q Consensus        77 g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p  156 (297)
                      +++++|+..|+++.+.++..+.      ||.+|...+.+++|+..|+++.+.                            
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----------------------------   54 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL----------------------------   54 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence            4688999999999988765322      788999999999999999999886                            


Q ss_pred             CcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          157 ETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       157 ~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      .++.+.++||.+|..    .+++++|+.+|++|.+.  .++. .++||.+|..    .+++++|+.+|+++.+.
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            256789999999999    89999999999999987  6777 8999999999    89999999999999986

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.04  E-value=5.8e-09  Score=95.62  Aligned_cols=146  Identities=17%  Similarity=0.084  Sum_probs=96.5

Q ss_pred             hhhhcCCCCCcHHHHHH--HHHHHcCC---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---C-ChHHHHH----HH
Q 022442           20 HVIHKVPAGDGPYVRAK--HAQLVQKD---PEAAIVLFWKAINAGDRVDSALKDMAVVMKQL---D-RSEEAIE----AI   86 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~---g-~~~eAi~----~~   86 (297)
                      ....+.|.+..+|-...  ..++..++   ..+|+.+|++|++++|+++.++..++.++...   + .....+.    .+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            45566666666644332  23344444   57799999999999999999999888877532   1 1111112    22


Q ss_pred             HH--HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHH
Q 022442           87 KS--FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGN  164 (297)
Q Consensus        87 ~~--al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~n  164 (297)
                      +.  ++...|.++  ..+..++.++...|++++|+..+++|+.++|                           +..++..
T Consensus       265 ~a~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---------------------------s~~a~~l  315 (372)
T 3ly7_A          265 DNIVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDLEM---------------------------SWLNYVL  315 (372)
T ss_dssp             HHHHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------------------------CHHHHHH
T ss_pred             HHHHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------CHHHHHH
Confidence            22  223445433  3444455566667888888888888888854                           2335677


Q ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          165 LAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       165 Lg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      +|.++...|++++|++.|.+|+.++|..+.
T Consensus       316 lG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          316 LGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            888888888888888888888888888765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=4.3e-10  Score=82.57  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHH-HHHHHHHHHHHCCChHHHHHHHH
Q 022442          105 LIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSR-LLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       105 L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~-~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      .|.++...|++++|+..|+++++..                          |+++. ++.++|.+|..+|++++|+.+|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~   59 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--------------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQ   59 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5778899999999999999999874                          45677 89999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++++|++.. +.+        +.+.+++..|++++..
T Consensus        60 ~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           60 SAIELNPDSPALQAR--------KMVMDILNFYNKDMYN   90 (99)
T ss_dssp             HHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred             HHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence            99999999987 543        5667788888777654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.03  E-value=2.5e-10  Score=107.15  Aligned_cols=192  Identities=12%  Similarity=0.063  Sum_probs=57.9

Q ss_pred             cccccchhhhhhhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442            9 KIFSSKKEDLFHVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS   88 (297)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~   88 (297)
                      ++......+.|   .+++ +..++...+..+...|++++|+.+++.+++..++ +.+...|+.+|.+.|+++++++.++ 
T Consensus        45 ~g~~~eAIdsf---ika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-  118 (449)
T 1b89_A           45 KGMVKEAIDSY---IKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-  118 (449)
T ss_dssp             ---------------------------------------------------------------------CHHHHTTTTT-
T ss_pred             cCCHHHHHHHH---HcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-
Confidence            34444445555   3343 4447777777777888999999988888874333 4455566666666666666665543 


Q ss_pred             HHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHH
Q 022442           89 FRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWA  168 (297)
Q Consensus        89 al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~  168 (297)
                          .|+.   .....+|+.+...|++++|+.+|.++-...--...+. ...+    .........+-.++.+|..++.+
T Consensus       119 ----~pn~---~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~-~Lg~----yq~AVea~~KA~~~~~Wk~v~~a  186 (449)
T 1b89_A          119 ----GPNN---AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLV-HLGE----YQAAVDGARKANSTRTWKEVCFA  186 (449)
T ss_dssp             ----CC-------------------CTTTHHHHHHHTTCHHHHHHHHH-TTTC----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ----CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHH-Hhcc----HHHHHHHHHHcCCchhHHHHHHH
Confidence                2321   1223355556666666666666655300000000000 0000    00000000000234566666777


Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +...|+++.|..+... |..+|++  ...+..+|.+.|++++|+.++++++..
T Consensus       187 Cv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            7777777777666664 3344433  335778899999999999999999986

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=7.5e-10  Score=82.27  Aligned_cols=70  Identities=10%  Similarity=0.083  Sum_probs=45.3

Q ss_pred             CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442           59 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        59 ~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      +|+++.+++.+|.++..+|++++|+..|++++.++|++.  ..+..+|.+|...|++++|+..|++++++.|
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            566666677777777777777777777777777776643  2444466667777777777777777776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.97  E-value=2.4e-09  Score=100.88  Aligned_cols=102  Identities=10%  Similarity=-0.050  Sum_probs=80.1

Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--  188 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~--  188 (297)
                      ..|+|++|+..|+++|++...         .+...|         |+...+++|||.+|..+|+|++|+.+|+++|++  
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~---------~lg~~H---------p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~  371 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSS---------VFEDSN---------VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS  371 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTT---------TBCTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhC---------ccChhc---------hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            468999999999999998420         011111         223457899999999999999999999999975  


Q ss_pred             ---CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCcchh
Q 022442          189 ---DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGR  230 (297)
Q Consensus       189 ---~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~~~~~~~  230 (297)
                         .|+++   . +.|||.+|..+|++++|+.+|++++...  ..+++++.
T Consensus       372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence               56776   3 6799999999999999999999999862  23555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=1.8e-09  Score=79.10  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           33 VRAKHAQLVQKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        33 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      +..+..+...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|++++.++|++..  ...        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~--------   73 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQA--------   73 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHH--------
Confidence            34566778899999999999999999999999 9999999999999999999999999999998532  221        


Q ss_pred             cCCHHHHHHHHHHHHHhhc
Q 022442          112 CGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p  130 (297)
                      .+.+.+++..|++++...|
T Consensus        74 ~~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           74 RKMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHHHHHHHHHCCTTHHHH
T ss_pred             HHHHHHHHHHHHHHhccCc
Confidence            1677889999998888765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=4.6e-08  Score=72.20  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022442          155 RQETSRLLGNLAWAYMQKTN---FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIP  224 (297)
Q Consensus       155 ~p~~~~~l~nLg~~y~~~g~---~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~  224 (297)
                      +|+++.++..+|.++...++   .++|..++++||+++|+++. .+.||..+...|+|++|+.+|++++...+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            47889999999999976665   79999999999999999998 999999999999999999999999997444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.87  E-value=1.1e-08  Score=96.28  Aligned_cols=103  Identities=14%  Similarity=0.047  Sum_probs=79.6

Q ss_pred             HHCCChHHHHHHHHHHHhh-----CCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442           74 KQLDRSEEAIEAIKSFRGL-----CSKQSQ-ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  147 (297)
Q Consensus        74 ~~~g~~~eAi~~~~~al~~-----~P~~~~-~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~  147 (297)
                      ...|++++|+..+++++.+     .|+++. ....++||.+|..+|+|++|+.+|+++|++..         ......| 
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~---------~~lG~~H-  378 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS---------KHYPVYS-  378 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------HHSCSSC-
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH---------HHcCCCC-
Confidence            3568999999999998763     555432 23456799999999999999999999999842         0011111 


Q ss_pred             hhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH
Q 022442          148 KKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK  194 (297)
Q Consensus       148 ~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~  194 (297)
                              |+.+..++|||.+|..+|++++|+.+|++|+++     .|+++.
T Consensus       379 --------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          379 --------LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             --------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                    223457899999999999999999999999986     588875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.86  E-value=3.3e-08  Score=92.99  Aligned_cols=118  Identities=14%  Similarity=-0.000  Sum_probs=88.4

Q ss_pred             HHHHHHCCChHHHHHHHHHHHhh-----CCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           70 AVVMKQLDRSEEAIEAIKSFRGL-----CSKQS-QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        70 g~~l~~~g~~~eAi~~~~~al~~-----~P~~~-~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      ..-+..+|++++|++.+++++..     .|+++ .....++|+.+|..+|++++|+.+++++|++...         ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~---------~lg  364 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI---------FFP  364 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------HSC
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------HcC
Confidence            34456789999999999999864     34432 2244567999999999999999999999998420         001


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCcHH----HhHHHHHHHHc
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-----DPDANK----ACNLGLCLIKR  205 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-----~P~~~~----~~nLg~~l~~~  205 (297)
                      ..|         |+.+..++|||.+|..+|++++|+.+|++|+++     .|+++.    ..+|+.+...+
T Consensus       365 ~~H---------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          365 GSH---------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SSC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            111         223457899999999999999999999999985     688874    35677776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.83  E-value=1.4e-08  Score=95.50  Aligned_cols=116  Identities=13%  Similarity=-0.032  Sum_probs=86.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          108 LYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       108 ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      -+..+|++++|+..++++|++...         .+...|         |....+++|||.+|..+|+|++|+.+|+++|+
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~---------~lg~~h---------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSE---------RLPDIN---------IYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSC---------CCCTTS---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccC---------cCCccc---------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            356889999999999999987320         001111         22345899999999999999999999999997


Q ss_pred             h-----CCCcH---H-HhHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCcchhhHHHHHHHHHHH
Q 022442          188 I-----DPDAN---K-ACNLGLCLIKRTRYNEARSVLEDVLYGR--IPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       188 ~-----~P~~~---~-~~nLg~~l~~~g~~~eA~~~~~~al~~~--~~~~~~~~~~~~a~~~l~~~  242 (297)
                      +     .|+++   . ++|||.+|..+|++++|+.+|++++...  ..+++++. .......|..+
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~  422 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL-IEDLILLLEEC  422 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHH
Confidence            5     46776   3 6799999999999999999999999762  23555543 23344444444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.81  E-value=1.5e-07  Score=86.16  Aligned_cols=146  Identities=10%  Similarity=-0.096  Sum_probs=100.4

Q ss_pred             HHHHcCCChHHHH--HHHHHHHHHCC---ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH----HcCCHHHHHHHHHH
Q 022442           54 KAINAGDRVDSAL--KDMAVVMKQLD---RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK----KCGKVEEQIEMLKR  124 (297)
Q Consensus        54 ~al~~~p~~~~a~--~~Lg~~l~~~g---~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~----~~g~~~eAi~~~~~  124 (297)
                      ++....|.++++|  +..|..+...+   .+.+|+.+|+++++++|+.+.....  ++.+|.    ..+.....+..+.+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~--la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE--KALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHhccCCCchhhHHHHHH
Confidence            3444456655553  33455555544   3589999999999999985433232  232332    11111222222222


Q ss_pred             HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH
Q 022442          125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK  204 (297)
Q Consensus       125 al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~  204 (297)
                      +++.                    ...+...|.++.++.-+|.++...|++++|+..+++|+.++|+...+..+|.++..
T Consensus       263 a~~a--------------------~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~  322 (372)
T 3ly7_A          263 EIDN--------------------IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM  322 (372)
T ss_dssp             HHHH--------------------HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHH--------------------HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2221                    11124457888999999999998999999999999999999874447889999999


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 022442          205 RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       205 ~g~~~eA~~~~~~al~~  221 (297)
                      .|++++|++.|++++..
T Consensus       323 ~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          323 KGMNREAADAYLTAFNL  339 (372)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999999998

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.81  E-value=3.4e-07  Score=90.82  Aligned_cols=172  Identities=13%  Similarity=0.021  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHH-HHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442           47 AAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK  125 (297)
Q Consensus        47 ~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi-~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a  125 (297)
                      .....|++++...|..++.|...+..+...|+.++|+ .+|++++..+|..  ..+...++.+....|++++|..+|+++
T Consensus       327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4556777777777777777777777777777777776 7777777777763  234455667777777788888777777


Q ss_pred             HHhh-----------ch----------hh--hhcCcchhHHhhhh------hhHHHhcC--C-CcHHHHHHHHHHHHHCC
Q 022442          126 LRLI-----------YQ----------GE--AFNGKPTKTARSHG------KKFQVSVR--Q-ETSRLLGNLAWAYMQKT  173 (297)
Q Consensus       126 l~~~-----------p~----------~~--~~~~~~~~~~~~~~------~~~~~~l~--p-~~~~~l~nLg~~y~~~g  173 (297)
                      +...           |.          ..  .+.. ..+..+..+      ..+..+++  | ....++...+.+-...+
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~-y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV-YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            7642           21          00  1110 001111111      11221111  1 23445666666655655


Q ss_pred             -ChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          174 -NFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       174 -~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                       +++.|..+|+++++..|+++. |...+......|+.+.|..+|++++..
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence             489999999999999999998 878888899999999999999999986

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.62  E-value=2.6e-06  Score=75.38  Aligned_cols=105  Identities=14%  Similarity=0.049  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHh
Q 022442          114 KVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK-----TNFMAAEVVYQKAQMI  188 (297)
Q Consensus       114 ~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~-----g~~~eA~~~y~~Al~~  188 (297)
                      ...+|...++++++++|.-                        .+..+|..||.+|...     |+.++|..+|++||++
T Consensus       178 ~l~~A~a~lerAleLDP~~------------------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L  233 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY------------------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY  233 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH------------------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc------------------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence            3578888888888886510                        0234899999999995     9999999999999999


Q ss_pred             CCCc-HH-HhHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC-Ccc----hhhHHHHHHHHHHH
Q 022442          189 DPDA-NK-ACNLGLCLIK-RTRYNEARSVLEDVLYGRIPG-CED----GRTRKRAEELLLEL  242 (297)
Q Consensus       189 ~P~~-~~-~~nLg~~l~~-~g~~~eA~~~~~~al~~~~~~-~~~----~~~~~~a~~~l~~~  242 (297)
                      +|+. .. .+..|..|.. +|++++|..++++++..++.. |+.    .....++..+|...
T Consensus       234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~  295 (301)
T 3u64_A          234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHV  295 (301)
T ss_dssp             CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTH
T ss_pred             CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHh
Confidence            9975 77 8899999988 599999999999999974432 332    23344555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.59  E-value=5.1e-07  Score=67.56  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..+|..+...|+|..|+.-|++|++..++...                   ..+..+.++.+||.+|.++|++++|+.++
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~   69 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            45788999999999999999999987432110                   01234678999999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHH
Q 022442          183 QKAQMIDPDANK-ACNLG  199 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg  199 (297)
                      +++++++|++.. ..|++
T Consensus        70 ~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           70 KKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHhhHH
Confidence            999999999998 77876

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.54  E-value=1.9e-06  Score=85.45  Aligned_cols=139  Identities=9%  Similarity=-0.067  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhchhhhhc----------CcchhHHhhhhh
Q 022442           80 EEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI-EMLKRKLRLIYQGEAFN----------GKPTKTARSHGK  148 (297)
Q Consensus        80 ~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi-~~~~~al~~~p~~~~~~----------~~~~~~~~~~~~  148 (297)
                      +....+|++++..+|..+  .++...+..+...|+.++|. .+|++|+...|....+.          +...+ ++..-.
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~-aR~iye  402 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPE-IETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHH
Confidence            356788999999999743  45555788888999999997 99999999888543211          11111 111111


Q ss_pred             hHHHh----c------CCC-----------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcHH-HhHHHHHHHHc
Q 022442          149 KFQVS----V------RQE-----------TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DANK-ACNLGLCLIKR  205 (297)
Q Consensus       149 ~~~~~----l------~p~-----------~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~~-~~nLg~~l~~~  205 (297)
                      .....    +      .|.           ...+|...+.+..+.|..+.|..+|.+|++..| .... +...+.+-...
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence            10001    0      142           345788888888889999999999999999833 3344 66666666666


Q ss_pred             C-CHHHHHHHHHHHHhc
Q 022442          206 T-RYNEARSVLEDVLYG  221 (297)
Q Consensus       206 g-~~~eA~~~~~~al~~  221 (297)
                      | +++.|..+|++++..
T Consensus       483 ~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKY  499 (679)
T ss_dssp             TSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            5 499999999999986

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.51  E-value=1.6e-05  Score=76.05  Aligned_cols=159  Identities=12%  Similarity=0.003  Sum_probs=124.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHhh--CCcchHHH
Q 022442           34 RAKHAQLVQKDPEAAIVLFWKAINA--GDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRGL--CSKQSQES  100 (297)
Q Consensus        34 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~Lg~~l~~~g~---------~~eAi~~~~~al~~--~P~~~~~~  100 (297)
                      .......+.|++++|+.+|++....  .|+. .++..|-.++...++         .++|.++|++....  .|+   ..
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~  106 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EA  106 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HH
Confidence            3344456789999999999988773  4553 456656556655544         68899999987764  455   35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      .++.+...|.+.|++++|..++++..+..                        +.| +..+++.|=..|.+.|+.++|..
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHH
Confidence            66778899999999999999999977641                        111 23477888889999999999999


Q ss_pred             HHHHHHHh--CCCcHHHhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMI--DPDANKACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~--~P~~~~~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|++..+.  .|+...+..|-.+|.+.|+.++|..++++..+.
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            99998874  677777888999999999999999999998875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.50  E-value=5.1e-07  Score=66.47  Aligned_cols=51  Identities=18%  Similarity=0.038  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           45 PEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        45 ~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      .++|..+++++++.+|+++.++..+|.++.+.|+|++|+..+++++..+|.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344555555555555555555555555555555555555555555544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.45  E-value=1.8e-06  Score=69.24  Aligned_cols=80  Identities=13%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCcHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhC-C-CcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcch
Q 022442          156 QETSRLLGNLAWAYMQKT---NFMAAEVVYQKAQMID-P-DANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDG  229 (297)
Q Consensus       156 p~~~~~l~nLg~~y~~~g---~~~eA~~~y~~Al~~~-P-~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~  229 (297)
                      |.+.++.+++||++.+.+   +..+++..++.+++.+ | ++.+ +++||..+.++|+|++|..+++++++.   +|.+.
T Consensus        29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i---eP~n~  105 (152)
T 1pc2_A           29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN  105 (152)
T ss_dssp             CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCH
Confidence            446789999999999998   6679999999999999 8 4456 999999999999999999999999998   56544


Q ss_pred             hhHHHHHHHHHHH
Q 022442          230 RTRKRAEELLLEL  242 (297)
Q Consensus       230 ~~~~~a~~~l~~~  242 (297)
                      .    |.++...+
T Consensus       106 Q----A~~Lk~~i  114 (152)
T 1pc2_A          106 Q----AKELERLI  114 (152)
T ss_dssp             H----HHHHHHHH
T ss_pred             H----HHHHHHHH
Confidence            3    66665555

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.45  E-value=1.6e-06  Score=76.77  Aligned_cols=110  Identities=16%  Similarity=0.087  Sum_probs=90.0

Q ss_pred             cCCChHHHHHHHHHHHHH---C--C------ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 022442           58 AGDRVDSALKDMAVVMKQ---L--D------RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-----GKVEEQIEM  121 (297)
Q Consensus        58 ~~p~~~~a~~~Lg~~l~~---~--g------~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-----g~~~eAi~~  121 (297)
                      .+|++.++++-.|.+...   .  |      ...+|...++++++++|+..+...+..||.+|...     |+.++|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            466778888888877644   2  3      35788889999999999843446777899999995     999999999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCCCc
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ-KTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~-~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      |++||+++|.+                         +..+++..|..|.. +|++++|..++++|+..+|..
T Consensus       227 ferAL~LnP~~-------------------------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAH-------------------------DPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTT-------------------------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCC-------------------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999997621                         24678889999977 599999999999999999886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.32  E-value=5.3e-06  Score=61.88  Aligned_cols=63  Identities=11%  Similarity=0.013  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          159 SRLLGNLAWAYMQKTNFMAAEVVYQKAQMID-------PDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~-------P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.-.+.||..+.+.|+|..|+..|++|+...       +.... +.+||.++.++|++++|+.++++++..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3456889999999999999999999999974       23445 789999999999999999999999987

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=1.5e-05  Score=63.87  Aligned_cols=86  Identities=13%  Similarity=0.003  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           44 DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLD---RSEEAIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        44 ~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g---~~~eAi~~~~~al~~~-P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      ....+...|.+.+..+|...++.+++|.++.+.+   +.+++|..++.+++.. |.+ .....+.||..|.+.|+|++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHHH
Confidence            3455677777777778888888888888888887   5668888888888877 632 2334455788888888888888


Q ss_pred             HHHHHHHHhhc
Q 022442          120 EMLKRKLRLIY  130 (297)
Q Consensus       120 ~~~~~al~~~p  130 (297)
                      .+++++|++.|
T Consensus        92 ~y~~~lL~ieP  102 (152)
T 1pc2_A           92 KYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHhcCC
Confidence            88888888866

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.10  E-value=0.00021  Score=68.23  Aligned_cols=153  Identities=14%  Similarity=0.076  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhhchhhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGL--CSKQSQESLDNVLIDLYKKCGK---------VEEQIEMLKRKLRLIYQGEA  134 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~--~P~~~~~~l~~~L~~ly~~~g~---------~~eAi~~~~~al~~~p~~~~  134 (297)
                      +..+=..+.+.|+.++|+++|++....  .|+   ...++.|..+|...++         +++|.++|++.....     
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-----  100 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-----  100 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-----
Confidence            455557788999999999999998765  454   3455666667766554         688888888866541     


Q ss_pred             hcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCcHHHhHHHHHHHHcCCHHHHH
Q 022442          135 FNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI--DPDANKACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~--~P~~~~~~nLg~~l~~~g~~~eA~  212 (297)
                                         +.| +..+++.|-.+|.+.|++++|+.+|++..+.  .|+...+..|-..|.+.|+.++|.
T Consensus       101 -------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~  160 (501)
T 4g26_A          101 -------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY  160 (501)
T ss_dssp             -------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence                               112 2357888999999999999999999998874  577767888899999999999999


Q ss_pred             HHHHHHHhcC-CCCCc----------chhhHHHHHHHHHHHHhcC
Q 022442          213 SVLEDVLYGR-IPGCE----------DGRTRKRAEELLLELESKQ  246 (297)
Q Consensus       213 ~~~~~al~~~-~~~~~----------~~~~~~~a~~~l~~~~~~~  246 (297)
                      .+|++..... .|+..          .....++|.+++..+....
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence            9999988752 11111          2456678888888886443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.06  E-value=0.0002  Score=68.30  Aligned_cols=162  Identities=9%  Similarity=-0.010  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 022442           46 EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRK  125 (297)
Q Consensus        46 ~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~a  125 (297)
                      +.....|++++...|..+..|...+..+.+.|+.++|..+|++++.. |.+..  +....+.. .+.+   +.   +++.
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~-~e~~---~~---~~~l  265 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV-MDEE---AV---YGDL  265 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH-TTCT---HH---HHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh-cchh---HH---HHHH
Confidence            45678999999999999999999999999999999999999999999 97432  22212111 0111   11   1111


Q ss_pred             HHhh-----------ch---hhhhcCcchhHHhhhh------hhHHHhcCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHH
Q 022442          126 LRLI-----------YQ---GEAFNGKPTKTARSHG------KKFQVSVRQE-TSRLLGNLAWAYMQKT-NFMAAEVVYQ  183 (297)
Q Consensus       126 l~~~-----------p~---~~~~~~~~~~~~~~~~------~~~~~~l~p~-~~~~l~nLg~~y~~~g-~~~eA~~~y~  183 (297)
                      ....           +.   ...+... .+..+..+      ..+.....|. ...++...+.+-...+ +.+.|..+|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y-~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife  344 (493)
T 2uy1_A          266 KRKYSMGEAESAEKVFSKELDLLRINH-LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFS  344 (493)
T ss_dssp             HHHTC----------CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHhhccchhhhhcccccHHHHHHH-HHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            1100           00   0000000 00000000      0111111121 3345544454444445 6999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      ++++..|+++. |...+......|+.+.|..+|+++
T Consensus       345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999988 777888889999999999888886

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.62  E-value=0.0027  Score=60.35  Aligned_cols=193  Identities=9%  Similarity=-0.019  Sum_probs=113.1

Q ss_pred             hhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Q 022442           17 DLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLC--   93 (297)
Q Consensus        17 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~--   93 (297)
                      ..| ..+..+|..+.............|+.+.|...|++|+.. |.....+...+... ..   ++....+.......  
T Consensus       200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~  274 (493)
T 2uy1_A          200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSMGEA  274 (493)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC----
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHhhcc
Confidence            355 445556766555555566677889999999999999999 98765554433321 11   11111111111001  


Q ss_pred             ------CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh--hhc--Ccch-hHHhhhh---hhHH--HhcCCC
Q 022442           94 ------SKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE--AFN--GKPT-KTARSHG---KKFQ--VSVRQE  157 (297)
Q Consensus        94 ------P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~--~~~--~~~~-~~~~~~~---~~~~--~~l~p~  157 (297)
                            +......++...+....+.|..+.|..+|.++ . .|...  .+.  .... ....+..   ..+.  +..-|+
T Consensus       275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                  11111233333455566677788888888887 3 23210  000  0000 0000000   1121  222366


Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      .+..+...+......|+.+.|..+|+++    +.... |......-...|+.+.+..++++.+.
T Consensus       353 ~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          353 STLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777788888899999999999998    44566 66777777788999999999998875

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.50  E-value=0.0012  Score=51.07  Aligned_cols=80  Identities=13%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             CcHHHHHHHHHHHHHCCChHH---HHHHHHHHHHhC-CCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchh
Q 022442          157 ETSRLLGNLAWAYMQKTNFMA---AEVVYQKAQMID-PDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGR  230 (297)
Q Consensus       157 ~~~~~l~nLg~~y~~~g~~~e---A~~~y~~Al~~~-P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~  230 (297)
                      ....+.+++||++.......+   ++.+++..+..+ |... + .+.||..+.++|+|++|..+++.+|+.   .|.+.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~Q  109 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNNQ  109 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHH
Confidence            356789999999999998888   999999999987 6444 5 889999999999999999999999997   555443


Q ss_pred             hHHHHHHHHHHHH
Q 022442          231 TRKRAEELLLELE  243 (297)
Q Consensus       231 ~~~~a~~~l~~~~  243 (297)
                          |..+...+.
T Consensus       110 ----A~~Lk~~i~  118 (126)
T 1nzn_A          110 ----AKELERLID  118 (126)
T ss_dssp             ----HHHHHHHHH
T ss_pred             ----HHHHHHHHH
Confidence                555555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.39  E-value=0.0065  Score=48.25  Aligned_cols=109  Identities=9%  Similarity=0.060  Sum_probs=80.5

Q ss_pred             hCCcchHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHH
Q 022442           92 LCSKQSQESLDNVLIDLYKKCGKV------EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNL  165 (297)
Q Consensus        92 ~~P~~~~~~l~~~L~~ly~~~g~~------~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nL  165 (297)
                      ..|++.. .+.. ...+..+.|+.      +.-+++|++|+...|++.  .        .+.+.+        ..+|...
T Consensus         8 ~~p~~yd-~W~~-yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~--------~~wrrY--------I~LWIrY   67 (161)
T 4h7y_A            8 MMANNPE-DWLS-LLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--Y--------GQNESF--------ARIQVRF   67 (161)
T ss_dssp             --CCSHH-HHHH-HHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--G--------TTCHHH--------HHHHHHH
T ss_pred             eCCCCHH-HHHH-HHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--c--------ccHHHH--------HHHHHHH
Confidence            3455433 3333 23455666888      888899999999988653  1        111211        2356666


Q ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          166 AWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       166 g~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.. ...++.++|..+|+.++.+....+. |...|..-.++|+...|..++.+++..
T Consensus        68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            644 6779999999999999999888877 999999999999999999999999996

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.26  E-value=0.0031  Score=48.64  Aligned_cols=87  Identities=13%  Similarity=0.027  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHH---HHHHHHHHHhhC-CcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEE---AIEAIKSFRGLC-SKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~e---Ai~~~~~al~~~-P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      .....+...|.+.+..++...++.+++|.++.......+   +|.+++..+... |.. .....+.||..+.+.|+|++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHhhhHHHH
Confidence            445667788888888788888999999999999888777   999999988877 532 234445588889999999999


Q ss_pred             HHHHHHHHHhhc
Q 022442          119 IEMLKRKLRLIY  130 (297)
Q Consensus       119 i~~~~~al~~~p  130 (297)
                      ..+.+..|++.|
T Consensus        94 ~~~~~~lL~~eP  105 (126)
T 1nzn_A           94 LKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.26  E-value=0.0024  Score=51.57  Aligned_cols=95  Identities=15%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      ..+...|.|+.|+-....++.+...+..... +       .         ....++..+|.+++..|+|..|+..|++||
T Consensus        28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-p-------~---------~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-P-------P---------QKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-H-------H---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-H-------H---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            4457889999999999998887421100000 0       0         013478999999999999999999999998


Q ss_pred             HhC------CC-------------------cHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          187 MID------PD-------------------ANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       187 ~~~------P~-------------------~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                      ...      |.                   ..+ .+.++.||.++|++.+|+.+++.+
T Consensus        91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            642      11                   114 578999999999999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.23  E-value=0.012  Score=46.77  Aligned_cols=124  Identities=6%  Similarity=-0.036  Sum_probs=93.4

Q ss_pred             HcCCChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHhhCCcc----h--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442           57 NAGDRVDSALKDMAVVMKQLDRS------EEAIEAIKSFRGLCSKQ----S--QESLDNVLIDLYKKCGKVEEQIEMLKR  124 (297)
Q Consensus        57 ~~~p~~~~a~~~Lg~~l~~~g~~------~eAi~~~~~al~~~P~~----~--~~~l~~~L~~ly~~~g~~~eAi~~~~~  124 (297)
                      -..|++++.|......+-..|+.      ++-++.|++++..-|..    +  ...+....+ ++...++.++|-++|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence            35799999999988888888999      89999999999877742    1  111111122 34677899999999999


Q ss_pred             HHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHH
Q 022442          125 KLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIK  204 (297)
Q Consensus       125 al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~  204 (297)
                      ++.+.                          ..++.+|...|..-.++|+.+.|...+.+|+.+.|........+..-++
T Consensus        86 a~~~h--------------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~  139 (161)
T 4h7y_A           86 ARANC--------------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN  139 (161)
T ss_dssp             HHHHC--------------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred             HHHHh--------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence            98862                          1245688888998899999999999999999999988776666665555


Q ss_pred             cCC
Q 022442          205 RTR  207 (297)
Q Consensus       205 ~g~  207 (297)
                      .|.
T Consensus       140 ~~~  142 (161)
T 4h7y_A          140 LQK  142 (161)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.13  E-value=0.0058  Score=47.44  Aligned_cols=79  Identities=14%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhH
Q 022442          158 TSRLLGNLAWAYMQKTNF---MAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR  232 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~---~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~  232 (297)
                      .+.+.+++||++......   .+++.+++..+..+|... + ++-||..+.++|+|++|..+.+.++..   .|.+.+  
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N~Q--  113 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ--  113 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTCHH--
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCCHH--
Confidence            457899999999988755   479999999999999665 5 889999999999999999999999997   555543  


Q ss_pred             HHHHHHHHHHH
Q 022442          233 KRAEELLLELE  243 (297)
Q Consensus       233 ~~a~~~l~~~~  243 (297)
                        |..+...+.
T Consensus       114 --A~~Lk~~Ie  122 (134)
T 3o48_A          114 --VGALKSMVE  122 (134)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              555555553

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.12  E-value=0.0072  Score=47.50  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cHHHHHHHHHHHHHCCChH---HHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhH
Q 022442          158 TSRLLGNLAWAYMQKTNFM---AAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTR  232 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~---eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~  232 (297)
                      .+.+.++++|++......+   +++.+++..+...|... + .+.||..+.++|+|++|..+.+.+|+.   +|.+.+  
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~Q--  112 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ--  112 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCHH--
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcHH--
Confidence            5678999999999987665   79999999999999766 5 889999999999999999999999997   565543  


Q ss_pred             HHHHHHHHHHH
Q 022442          233 KRAEELLLELE  243 (297)
Q Consensus       233 ~~a~~~l~~~~  243 (297)
                        |..+...+.
T Consensus       113 --A~~Lk~~Ie  121 (144)
T 1y8m_A          113 --VGALKSMVE  121 (144)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              555555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.021  Score=57.01  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=84.9

Q ss_pred             HCCC-hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhchh-hhhcCcchhHHhhhhhhHH
Q 022442           75 QLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKC-GKVEEQIEMLKRKLRLIYQG-EAFNGKPTKTARSHGKKFQ  151 (297)
Q Consensus        75 ~~g~-~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~-g~~~eAi~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~  151 (297)
                      ..|+ ++.|+..++++....|.... .+...+..++... .+--+|+.++.++++-.... ..........       . 
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~-------~-  330 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS-------A-  330 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH-------H-
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc-------c-
Confidence            3455 58899999999999996211 1111122222222 34557888888887632100 0000000000       0 


Q ss_pred             HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHH
Q 022442          152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDV  218 (297)
Q Consensus       152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~a  218 (297)
                       .+.|-....+.-=+..+...|+|+-|+.+-++|+.+.|+... |..|+.||+.+|+++.|+-.+...
T Consensus       331 -~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 -RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             000111223444467778899999999999999999999988 999999999999999999887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.66  E-value=0.012  Score=47.54  Aligned_cols=94  Identities=12%  Similarity=-0.010  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh---------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---Ccc--
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV---------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLC---SKQ--   96 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~---P~~--   96 (297)
                      +++.-....+..|.++.|+-+...++....++         ..++..+|.++...|+|.+|...|++++...   |+.  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46666677788999999999999977753322         3478899999999999999999999875321   111  


Q ss_pred             ------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 022442           97 ------------------SQESLDNVLIDLYKKCGKVEEQIEMLKR  124 (297)
Q Consensus        97 ------------------~~~~l~~~L~~ly~~~g~~~eAi~~~~~  124 (297)
                                        ....+-+-++.+|.+.|++++|+..++.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                              1124556689999999999999987655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.37  E-value=0.09  Score=48.22  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=73.1

Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhcCcc-hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFNGKP-TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      ..|+.++|+..+++|+.+. .+..+.+.. ..........+.    .....++..++.++...|++.+|+..+++++..+
T Consensus       127 ~~~~~~~a~~~l~~Al~L~-rG~~L~~~~~~~w~~~~r~~l~----~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          127 AAGRFEQASRHLSAALREW-RGPVLDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-CSSTTGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHhc-CCCCCCCCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4578888888888888773 222111100 000000000000    0112356778899999999999999999999999


Q ss_pred             CCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          190 PDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       190 P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      |-+.. +..|-.+|...|+..+|+..|+++..
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99998 88999999999999999999988664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.32  E-value=0.06  Score=49.38  Aligned_cols=88  Identities=15%  Similarity=0.033  Sum_probs=70.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCC----------h------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDR----------V------------DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~----------~------------~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      ....|+.+.|...+++|+.+-..          .            ..++..++..+...|++++|+..++.++..+|-+
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~  204 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR  204 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            34578999999999999985211          1            1234457788899999999999999999999963


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           97 SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        97 ~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                        +.++..|..+|...|+..+|+..|++.-+.
T Consensus       205 --E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          205 --EPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             --HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              456666778899999999999999997664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.29  E-value=0.23  Score=48.82  Aligned_cols=112  Identities=19%  Similarity=0.036  Sum_probs=64.7

Q ss_pred             HHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHh
Q 022442           74 KQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVS  153 (297)
Q Consensus        74 ~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (297)
                      ...|++++|.+..+   .+..    ...+..||..+.+.|+++.|+.+|.++=...  +                ...+.
T Consensus       663 l~~~~~~~A~~~~~---~~~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~--~----------------l~~l~  717 (814)
T 3mkq_A          663 LKVGQLTLARDLLT---DESA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLE--S----------------LFLLH  717 (814)
T ss_dssp             HHHTCHHHHHHHHT---TCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH--H----------------HHHHH
T ss_pred             hhcCCHHHHHHHHH---hhCc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChh--h----------------hHHHH
Confidence            44566666655432   2222    2344568999999999999999999853321  0                00011


Q ss_pred             cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHHHHHHHHcCCHHHHHHHHHH
Q 022442          154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       154 l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      ...++.+.+..++......|++..|..+|.+.     .+  ....-.+|.+.|++++|..+-++
T Consensus       718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~--~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD--IQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC--HHHHHHHHHHcCChHHHHHHHHH
Confidence            11234455667777777788888777766552     11  12223346666777776665544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.80  E-value=0.27  Score=48.27  Aligned_cols=46  Identities=17%  Similarity=0.022  Sum_probs=36.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF   89 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a   89 (297)
                      ++.-|+++.|.+..+     ..+.+..|..||..+.+.|+++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            445566666666543     2356778999999999999999999999875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.62  E-value=0.095  Score=40.58  Aligned_cols=65  Identities=8%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           32 YVRAKHAQLVQKD---PEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        32 ~~~~~~~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      -|+.....+..++   ...++.+++..++.+| ...+.++.||+.+.++|+|.+|....+.+++..|++
T Consensus        43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N  111 (134)
T 3o48_A           43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  111 (134)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence            3344444444433   3458888888887777 457788888888888888888888888888888864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.59  E-value=0.14  Score=40.08  Aligned_cols=68  Identities=7%  Similarity=0.019  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc
Q 022442           29 DGPYVRAKHAQLVQKD---PEAAIVLFWKAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ   96 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~   96 (297)
                      ..+-|+.....+...+   ..+++.+++..++.+| ...+.++.||+.+.++|+|.+|....+.+++..|++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            3344455445554443   4458888888887776 567788888888888888888888888888888864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.56  E-value=0.12  Score=53.15  Aligned_cols=100  Identities=9%  Similarity=0.016  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      ..++.|.+.|.+.|+.++|..++.+.-+....+                     +.| +..+|+.|=..|.+.|+.++|.
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------------~~P-dvvTYNtLI~Glck~G~~~eA~  185 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------------KLL-TLDMYNAVMLGWARQGAFKELV  185 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------------TTC-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------------CCC-CHhHHHHHHHHHHhCCCHHHHH
Confidence            346778899999999999999997754431000                     001 2347888999999999999999


Q ss_pred             HHHHHHHH--hCCCcHHHhHHHHHHHHcCCH-HHHHHHHHHHHhc
Q 022442          180 VVYQKAQM--IDPDANKACNLGLCLIKRTRY-NEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~--~~P~~~~~~nLg~~l~~~g~~-~eA~~~~~~al~~  221 (297)
                      .+|++..+  +.||-..+..|-.++.+.|+. ++|..++++....
T Consensus       186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            99999987  468887788888899999985 7889999998875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.27  Score=40.03  Aligned_cols=102  Identities=12%  Similarity=0.020  Sum_probs=61.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      .+++.-|+++.|.+..+..     +...-|..||.....+|+++=|+.+|+++-...      .    |.-+|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~----L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD------K----LSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------H----HHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH------H----HHHHHHHhCCHH
Confidence            3566778888888776643     456678888888888888888888877643221      1    223455666665


Q ss_pred             HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Q 022442          117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQK  184 (297)
Q Consensus       117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~  184 (297)
                      .-...-+.+....                               -++....++..+|+++++++.|.+
T Consensus        78 ~L~kla~iA~~~g-------------------------------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRE-------------------------------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTT-------------------------------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCc-------------------------------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4443322222210                               022234566788888888877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.38  E-value=0.34  Score=42.09  Aligned_cols=57  Identities=19%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK   95 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~   95 (297)
                      .+..|++++|+......|+.+|.+++.-..|-.+|.-.|+++.|..-++.+.+++|.
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            457899999999999999999999999999999999999999999999999999997

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.34  E-value=0.077  Score=50.41  Aligned_cols=63  Identities=13%  Similarity=0.025  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          160 RLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       160 ~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ..+..||.+..-...++.|..+|++|+.+.|++.. ++.||.+....|+.-+|+-+|-+++...
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            46788999999999999999999999999999998 8999999999999999999999999863

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.90  E-value=0.54  Score=38.16  Aligned_cols=138  Identities=16%  Similarity=-0.034  Sum_probs=89.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIE  120 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~  120 (297)
                      +-.|++.++=+---   +-|..++.-..+++++.-.|.+..++-++.   .++-   ..+++. -.-+|.+.+++..|+.
T Consensus        14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT---~Ts~YY-k~LCy~klKdYkkA~~   83 (242)
T 3kae_A           14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNT---CTSKYY-ESLCYKKKKDYKKAIK   83 (242)
T ss_dssp             HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHH---TCCB---HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred             hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHH---hcch---HHHHHH-HHHHHHHHHHHHHHHH
Confidence            44677766532211   234444556778999999999999987643   2322   234443 3568899999999999


Q ss_pred             HHHHHHHhhchhhhhcCcchhHHhhhhhhHH-HhcCCCcHHHHH-HHHHHHHHCCChHHHHHHHHHHHHhCCCcHHHhHH
Q 022442          121 MLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ-VSVRQETSRLLG-NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKACNL  198 (297)
Q Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~l~p~~~~~l~-nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~~nL  198 (297)
                      ++++.|.-.-+..          .......+ .-++|.+.+... -+|.++.+.|..+||+.+|......+|=.+..-||
T Consensus        84 ~le~il~~kvd~d----------~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl  153 (242)
T 3kae_A           84 SLESILEGKVERD----------PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL  153 (242)
T ss_dssp             HHHHHHTTCSBCC----------CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhcccccC----------cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence            9999985310000          00000111 244566666554 57999999999999999999999999987764443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.85  E-value=1.4  Score=40.35  Aligned_cols=171  Identities=12%  Similarity=0.078  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHH-----HHHHHHHHHH-CCChHHHHHHHHHHHhhCCcc--hH--HH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSA-----LKDMAVVMKQ-LDRSEEAIEAIKSFRGLCSKQ--SQ--ES  100 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~Lg~~l~~-~g~~~eAi~~~~~al~~~P~~--~~--~~  100 (297)
                      +...++.++...|+.++-..++......-+..+.+     ...|-..+.. -|..+.=++++..+++-.-.+  ..  ..
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777888888888887776654433222222     2223223322 244555566666666543321  11  11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          101 LDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       101 l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      +..-||.+|...|+|.+|..++.+.++-...             ...+..       ..+++..-..+|..++++..+..
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-------------~dd~~~-------llev~lle~~~~~~~~n~~k~k~  160 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKK-------------LDDKNL-------LVEVQLLESKTYHALSNLPKARA  160 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-------------SSCTHH-------HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-------------cccchh-------HHHHHHHHHHHHHHhccHHHHHH
Confidence            3335899999999999999999998875321             001111       12467778889999999999999


Q ss_pred             HHHHHHHhC---CCcH---H--HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMID---PDAN---K--ACNLGLCLI-KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~---P~~~---~--~~nLg~~l~-~~g~~~eA~~~~~~al~~  221 (297)
                      .|.+|....   +-++   .  ...-|..++ ..++|.+|...|-++...
T Consensus       161 ~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          161 ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            999998654   1222   1  234588888 899999999999888754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.69  Score=46.07  Aligned_cols=117  Identities=13%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             cCC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCChHHHHHHHHHHHh--------hCCcchH--------HHH
Q 022442           42 QKD-PEAAIVLFWKAINAGDRVDSALKDMAVVMK---QLDRSEEAIEAIKSFRG--------LCSKQSQ--------ESL  101 (297)
Q Consensus        42 ~g~-~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~---~~g~~~eAi~~~~~al~--------~~P~~~~--------~~l  101 (297)
                      .++ .+.|+.++++....+|..... ...+.+..   ...+--+|+.++.+.++        +.+.+..        ..+
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 588999999999988876533 22232222   12334566666666553        2222211        123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      ...-+.-+..+|+++-|+.+-++|+...|                          ..-..|..|+.||..+|+|+.|+-.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aP--------------------------seF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELAL--------------------------DSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCc--------------------------hhhHHHHHHHHHHHHhccHHHHHHH
Confidence            33346667789999999999999999865                          3446899999999999999999988


Q ss_pred             HHHH
Q 022442          182 YQKA  185 (297)
Q Consensus       182 y~~A  185 (297)
                      +..+
T Consensus       394 LNSc  397 (754)
T 4gns_B          394 INSM  397 (754)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            7765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.49  E-value=0.37  Score=49.57  Aligned_cols=101  Identities=10%  Similarity=-0.069  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHh-----hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcc
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRG-----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKP  139 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~-----~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~  139 (297)
                      .+..|-..|.+.|+.++|..+|+....     ..|+   ...++.|.+.|.+.|++++|.++|++..+.-          
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G----------  195 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAG----------  195 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----------
Confidence            466677889999999999999976432     3565   3567778888999999999999999976641          


Q ss_pred             hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHh--CCCcH
Q 022442          140 TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNF-MAAEVVYQKAQMI--DPDAN  193 (297)
Q Consensus       140 ~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~-~eA~~~y~~Al~~--~P~~~  193 (297)
                                    +.| +.-+++.|=.++.+.|+. ++|..+|++..+.  .||..
T Consensus       196 --------------~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v  237 (1134)
T 3spa_A          196 --------------LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL  237 (1134)
T ss_dssp             --------------CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred             --------------CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence                          112 233566666678888875 7888999988874  45544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.06  E-value=0.33  Score=46.02  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..||++.+....++.|...|.+|+.+.|                          ++-..++.||.+....|+.-+|+-+|
T Consensus       156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--------------------------~~G~~~nqLavla~~~~~~l~a~y~y  209 (497)
T 1ya0_A          156 VHLGDIARYRNQTSQAESYYRHAAQLVP--------------------------SNGQPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHhCC--------------------------CCCchHHHHHHHHhcccccHHHHHHH
Confidence            4589999999999999999999999866                          34458899999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHH
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                      -|++....-.+. ..||...+.+
T Consensus       210 ~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          210 CRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCChhHHHHHHHHHHH
Confidence            999988766776 7788777754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.02  E-value=3.8  Score=37.99  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .+...|+.+|...|++.+|..++.....-..             ....+..       -.+++.--..+|...+++..|.
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-------------~~~~~~~-------kve~~l~q~rl~l~~~d~~~a~  197 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETY-------------GSMEMSE-------KIQFILEQMELSILKGDYSQAT  197 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-------------SSSCHHH-------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------hcccHHH-------HHHHHHHHHHHHHHCCCHHHHH
Confidence            4456789999999999999999998654210             0001111       1235666788899999999999


Q ss_pred             HHHHHHHH---hCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQM---IDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~---~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..++++..   -.+.++    . ..-.|..+...++|.+|...|..+...
T Consensus       198 ~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          198 VLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99999743   233333    2 235688999999999999999999874

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.70  E-value=0.2  Score=46.49  Aligned_cols=108  Identities=11%  Similarity=0.011  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      ...++..+|..+...|++++|+++|.++...+... ...........++...+++..+...++++-.+...+.    .  
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d--  203 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----D--  203 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----C--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----C--
Confidence            45578889999999999999999999998876531 1234445566788899999999999999877632110    0  


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                            ...        .......-|.++...++|.+|-..|..++...
T Consensus       204 ------~~~--------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          204 ------WER--------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             ------THH--------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             ------HHH--------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence                  000        01234556888899999999999999988754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.35  E-value=1.2  Score=40.82  Aligned_cols=127  Identities=9%  Similarity=-0.034  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCh--H--H--HHHHHHHHHHHCCChHHHHHHHHHHHhhCCc----chHHHHHHHHHHHHHHc
Q 022442           43 KDPEAAIVLFWKAINAGDRV--D--S--ALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK----QSQESLDNVLIDLYKKC  112 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~--~--~--a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~----~~~~~l~~~L~~ly~~~  112 (297)
                      +..+.-+..+...++..-+.  .  .  .-..||.+|...|+|.+|.+.+.+++.-...    .....++..-..+|...
T Consensus        73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~  152 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL  152 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence            44555555666655521111  1  1  2237899999999999999999887764432    12234455567889999


Q ss_pred             CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHh
Q 022442          113 GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM-QKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       113 g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~-~~g~~~eA~~~y~~Al~~  188 (297)
                      |++.++...|.++.....  ..+.         ++. .       .+.+...-|..++ ..++|.+|...|-++++-
T Consensus       153 ~n~~k~k~~l~~a~~~~~--ai~~---------~p~-i-------~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          153 SNLPKARAALTSARTTAN--AIYC---------PPK-V-------QGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHH--HSCC---------CHH-H-------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhhc--cCCC---------CHH-H-------HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            999999999999987631  0000         000 0       1224455688889 899999999999999854

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.11  E-value=0.12  Score=49.13  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             HHHcCCHHHHHHHHHHHHH-----------cCCChHHHHHHHHHHHHHCCChHHHHH--------------HHHHH-Hhh
Q 022442           39 QLVQKDPEAAIVLFWKAIN-----------AGDRVDSALKDMAVVMKQLDRSEEAIE--------------AIKSF-RGL   92 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~-----------~~p~~~~a~~~Lg~~l~~~g~~~eAi~--------------~~~~a-l~~   92 (297)
                      .+..+++++|..+-...+.           +|+-.+..|+..+.++-..|+..+...              .++.+ +..
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            3467888888887765541           245566778888888888888766421              12221 122


Q ss_pred             CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442           93 CSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus        93 ~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                      ++ +.+..+.+.+...|...+.++.|..+..++.  .|...+-+                   ++....++.+|.++.-+
T Consensus       226 D~-~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn-------------------~q~~rY~YY~GRI~a~q  283 (523)
T 4b4t_S          226 DN-ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSS-------------------SLEARYFFYLSKINAIQ  283 (523)
T ss_dssp             SS-CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCH-------------------HHHHHHHHHHHHHHHHT
T ss_pred             Cc-chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCH-------------------HHHHHHHHHHHHHHHHh
Confidence            23 3567888889999999999999999998864  34211100                   01235678899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCc
Q 022442          173 TNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       173 g~~~eA~~~y~~Al~~~P~~  192 (297)
                      ++|.+|..++..|+..-|.+
T Consensus       284 ~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          284 LDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             TCHHHHHHHHHHHTSSCSCS
T ss_pred             ccHHHHHHHHHHHHHhCCcc
Confidence            99999999999999987754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.90  E-value=2.2  Score=34.58  Aligned_cols=54  Identities=13%  Similarity=0.049  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKL  126 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al  126 (297)
                      ++.-+.++   .+.|+++.|.+..+..   +-    ...+..||..-..+|+++-|+.+|.++=
T Consensus         8 ~~~rF~LA---L~lg~l~~A~e~a~~l---~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            8 PHIRFDLA---LEYGNLDAALDEAKKL---ND----SITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHH---HHTTCHHHHHHHHHHH---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hHHHHHHH---HhcCCHHHHHHHHHHh---CC----HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            34444444   4679999999886654   22    2344558888899999999999998843

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.46  E-value=8.8  Score=33.86  Aligned_cols=161  Identities=14%  Similarity=0.036  Sum_probs=90.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      .+.+|++=+|-+.|+.              +..=|.+++++++|++++...    ++..-...-..+...+.++|.+.+-
T Consensus        23 ~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~   88 (312)
T 2wpv_A           23 KIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV   88 (312)
T ss_dssp             HHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence            4566777777777753              566677889999999986543    2222222223455556677777654


Q ss_pred             H--HHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH--Hhc---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-
Q 022442          115 V--EEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ--VSV---RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ-  186 (297)
Q Consensus       115 ~--~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~l---~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al-  186 (297)
                      .  ++.+.-+.+.+...|+.....   .+..   .....  ...   .-.++..|..+|..|.+.|++.+|..+|-..- 
T Consensus        89 ~~~~~~~~rl~~l~~~~p~~~~~r---~~fi---~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~  162 (312)
T 2wpv_A           89 KVDDISVARLVRLIAELDPSEPNL---KDVI---TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTH  162 (312)
T ss_dssp             CCSHHHHHHHHHHHTTCCTTCTTH---HHHH---HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCchH---HHHH---HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Confidence            3  444554555555444321100   0000   00000  011   12478899999999999999999999985221 


Q ss_pred             ---------------H---hCCCcHH-HhH-HHHHHHHcCCHHHHHHHHHHHH
Q 022442          187 ---------------M---IDPDANK-ACN-LGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       187 ---------------~---~~P~~~~-~~n-Lg~~l~~~g~~~eA~~~~~~al  219 (297)
                                     +   -.|...+ +.. ....|...|+...|...+....
T Consensus       163 ~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          163 DSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                           1   1122222 222 2335566777777777766543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.22  E-value=2  Score=37.23  Aligned_cols=53  Identities=11%  Similarity=0.038  Sum_probs=45.7

Q ss_pred             HHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          169 YMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       169 y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|..++|+......++-+|.|.. ...|..+|.-.|+++.|..-++-+...
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            45678888999999999999999888 788888888899999999888888886

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=87.91  E-value=12  Score=31.90  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~  221 (297)
                      +.|..+|++|.+     +.|.+|.    .+|.+.+|.. +++.++|..+.++++..
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~  203 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD  203 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            678889999875     5788984    4577776665 79999999988877653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.26  E-value=3.2  Score=43.29  Aligned_cols=140  Identities=9%  Similarity=0.049  Sum_probs=89.5

Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh
Q 022442           68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG  147 (297)
Q Consensus        68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~  147 (297)
                      .+...+...|.++-+.+    ....+|.++.  ..+++|.+|...|++++|..+|+++-.-.............    ..
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~--~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~----~~  886 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPI--AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE----FQ  886 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH----HH
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcH--HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc----cc
Confidence            45556677777766544    4456665432  23678999999999999999999864321110000000000    00


Q ss_pred             hhHH-HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CcH----H-HhHHHHHHHHcCCHHHHHHHHHH
Q 022442          148 KKFQ-VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDP-DAN----K-ACNLGLCLIKRTRYNEARSVLED  217 (297)
Q Consensus       148 ~~~~-~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P-~~~----~-~~nLg~~l~~~g~~~eA~~~~~~  217 (297)
                      .... .......+..+..+..++.+.+-++.+++.-+.|++..+ ++.    . |.++-......|+|++|...+-.
T Consensus       887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            0000 011122345677788899999999999999999998764 333    2 56788889999999999777643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.70  E-value=11  Score=34.81  Aligned_cols=105  Identities=11%  Similarity=0.115  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHh----hCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcch
Q 022442           65 ALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPT  140 (297)
Q Consensus        65 a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~  140 (297)
                      ....|+.++...|++.+|...+.....    ..+..--.........+|...+++..|...++++.......  .  .  
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~--~--  212 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--P--K--  212 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--S--C--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--C--C--
Confidence            345689999999999999999887542    22221122344556788999999999999999975321000  0  0  


Q ss_pred             hHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 022442          141 KTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI  188 (297)
Q Consensus       141 ~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~  188 (297)
                            ....       ....+...|.++...++|.+|-.+|..++..
T Consensus       213 ------~~~l-------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 ------YESL-------KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             ------CHHH-------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ------cHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                  0000       0135567899999999999999999999864

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.46  E-value=20  Score=31.99  Aligned_cols=126  Identities=18%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             HHHcCCH---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHH----HhhCCcchHHHHHHHHHHHHHH
Q 022442           39 QLVQKDP---EAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF----RGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        39 ~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~a----l~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      .+.+|++   =+|-+.|+.              ++.=|.++++|++|++++-..    ++..-...-.++...+.++|.+
T Consensus        22 ~I~~G~y~~~YEAHQ~~RT--------------i~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~   87 (336)
T 3lpz_A           22 RIAEGQPEEQYEAAQETRL--------------VAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQ   87 (336)
T ss_dssp             HHHHCCHHHHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCccccHHHHHHHH--------------HHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence            3567888   666666653              455578899999999976542    2222212233555666688877


Q ss_pred             cCC--HHHHHHHHHHHHHhhchhhhh----cCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          112 CGK--VEEQIEMLKRKLRLIYQGEAF----NGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       112 ~g~--~~eAi~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      .+-  -++...-+-+.+...|+....    .....+.-..++     .-.-.++..+..+|..|.+.+++.+|+.+|-
T Consensus        88 ~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-----~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A           88 AGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-----DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-----SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            652  234444444444444432110    000000000000     1122578899999999999999999999983

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.11  E-value=15  Score=38.18  Aligned_cols=120  Identities=13%  Similarity=-0.016  Sum_probs=78.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCc--------------------chH
Q 022442           40 LVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG-LCSK--------------------QSQ   98 (297)
Q Consensus        40 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~-~~P~--------------------~~~   98 (297)
                      +..+.++-+..    .+..-|.++..-+.+|.++...|++++|...|+++.. +.+.                    ...
T Consensus       823 ~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  898 (1139)
T 4fhn_B          823 FLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL  898 (1139)
T ss_dssp             HHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSS
T ss_pred             HHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccH
Confidence            34455554443    2344566666778999999999999999999987632 1110                    001


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHH
Q 022442           99 ESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAA  178 (297)
Q Consensus        99 ~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA  178 (297)
                      ...+..+..++.+.|.++.+++.-+.||+..+++.              ...       ....|.++=..+..+|+|++|
T Consensus       899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--------------~~~-------~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDD--------------EDL-------SIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--------------HHH-------HHHHHHHHHHHHHHHCCSGGG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC--------------hhh-------HHHHHHHHHHHHHhhCCHHHH
Confidence            12334456788889999999999999887643110              000       112567777788999999999


Q ss_pred             HHHHHH
Q 022442          179 EVVYQK  184 (297)
Q Consensus       179 ~~~y~~  184 (297)
                      ..++-.
T Consensus       958 y~aL~~  963 (1139)
T 4fhn_B          958 HVALMV  963 (1139)
T ss_dssp             GHHHHH
T ss_pred             HHHHHh
Confidence            877644

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=83.28  E-value=19  Score=30.34  Aligned_cols=46  Identities=15%  Similarity=0.154  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~  221 (297)
                      +.|..+|++|++     +.|.+|.    ..|.+.+|.. +|+.++|..+-++++..
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578889999985     5788884    4577776665 79999999988887764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.14  E-value=23  Score=34.33  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=44.0

Q ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          163 GNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       163 ~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ...++++ ..|+++.|..++++.-.-.++... .+-+|.++..+|+.++|..+|+++...
T Consensus       290 ~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~  348 (618)
T 1qsa_A          290 RRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ  348 (618)
T ss_dssp             HHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence            4456655 459999999999775443233345 688999999999999999999988763

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.01  E-value=5  Score=36.89  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc--ch--HHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK--QS--QESLDN  103 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~--~~--~~~l~~  103 (297)
                      +...++..+...||++.|.+.|.++...   .....+.+..+-.++...+++..+...+.++..+...  ++  ...+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5667788888999999999999998762   3345677888888999999999999999987654221  11  222334


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      ..|.++...++|.+|...|..++.-
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            4567778899999999999887764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.18  E-value=19  Score=29.23  Aligned_cols=88  Identities=16%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCc------------chHHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRG----LCSK------------QSQESL  101 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~----~~P~------------~~~~~l  101 (297)
                      +..-.|.+..++-.+.     .-+...+.+.-+.+|....++..|+..++..+.    .+|+            ...+..
T Consensus        42 ~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF  116 (242)
T 3kae_A           42 VLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF  116 (242)
T ss_dssp             HHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred             hhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence            3445788877765553     345666778889999999999999999998872    2232            013456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      .+.+|.++.+.|.-+|||..|.......|
T Consensus       117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          117 ESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            67789999999999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 5e-09
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
           Q +   AI  F KA+        A  ++  V+K+    + A+ A      L    +   +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--V 239

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRL--------IYQGEAFNGKPTKTARSHGKKFQVS 153
              L  +Y + G ++  I+  +R + L             A   K +           + 
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 154 VRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEAR 212
           +    +  L NLA    ++ N   A  +Y+KA  + P+   A  NL   L ++ +  EA 
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359

Query: 213 SVLEDVL 219
              ++ +
Sbjct: 360 MHYKEAI 366

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 29/164 (17%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
           Q   + AI  + +AI        A  ++A  +K+     EA +       L    +    
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADS 307

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161
            N L ++ ++ G +EE + + ++ L +                            E +  
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEV--------------------------FPEFAAA 341

Query: 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIK 204
             NLA    Q+     A + Y++A  I P    A  N+G  L +
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 164 NLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVL 219
            LA    Q  +F AAE    +    +PD       L     +  R + +       +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 149 KFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTR 207
              +S+    + + GNLA  Y ++     A   Y++A  + P    A CNL   L ++  
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286

Query: 208 YNEARSVLEDVLY 220
             EA       L 
Sbjct: 287 VAEAEDCYNTALR 299

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 8/139 (5%)

Query: 81  EAIEAIKSF-RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL------IYQGE 133
             I  ++   +   +    E   N+ + L    G   + ++ L     +           
Sbjct: 67  NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQL 126

Query: 134 AFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD-A 192
                      +  K    S        L +L      +     AE  Y+ A  + P   
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG 186

Query: 193 NKACNLGLCLIKRTRYNEA 211
                L +    +  +   
Sbjct: 187 QPYNQLAILASSKGDHLTT 205

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 18/185 (9%), Positives = 42/185 (22%), Gaps = 31/185 (16%)

Query: 35  AKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS 94
           +   +         +       N           + ++  +   +   ++        CS
Sbjct: 92  SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP---QSSSCS 148

Query: 95  KQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSV 154
              Q  L + L D+ +   +  +     +   +L                          
Sbjct: 149 YICQHCLVH-LGDIARYRNQTSQAESYYRHAAQL-------------------------- 181

Query: 155 RQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARS 213
                +    LA     K + +     Y ++  +      A  NL   L K     +   
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241

Query: 214 VLEDV 218
               V
Sbjct: 242 TKWGV 246

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
           +KD + A+  F    +   R      ++  +   L    EA +A           +    
Sbjct: 18  KKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 74

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRL 161
              ++  Y +  K +  I+ LK  L  +   +  + K             +  +     +
Sbjct: 75  QRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEV 122

Query: 162 LGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNEARSVLEDVLY 220
           L N+A+ Y +K  +  AE     A  +  +   +  +  +  + + +  E   +    L+
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLF 182

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 18/189 (9%), Positives = 47/189 (24%), Gaps = 13/189 (6%)

Query: 42  QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESL 101
                 A   F +A+     +      + + + Q    + A EA  S   L    +    
Sbjct: 50  LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-- 107

Query: 102 DNVLIDLYKKCGKVEEQIEMLKRKLRL----------IYQGEAFNGKPTKTARSHGKKFQ 151
                      G+ +   + L    +           +Y  E    +            +
Sbjct: 108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167

Query: 152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA-CNLGLCLIKRTRYNE 210
               Q    ++        ++T     +        +    ++    LG   +     + 
Sbjct: 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227

Query: 211 ARSVLEDVL 219
           A ++ +  +
Sbjct: 228 ATALFKLAV 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.6
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.42
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.35
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.2
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.96
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.52
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.24
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.85
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	89.15
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.07
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.28
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.3
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	82.28
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	81.84

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-21  Score=171.74  Aligned_cols=189  Identities=15%  Similarity=0.098  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      .+.-|..++..|++++|+.+|+++++.+|+++++|..+|.++..+|++++|+..|++++.++|++.  ..+..+|.+|..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~   99 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ--TALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc--cccccccccccc
Confidence            456677788999999999999999999999999999999999999999999999999999999853  455668999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcC---------------cch-hHH--hhhh---hhHH--HhcCCC--cHHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNG---------------KPT-KTA--RSHG---KKFQ--VSVRQE--TSRLLGNLA  166 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~---------------~~~-~~~--~~~~---~~~~--~~l~p~--~~~~l~nLg  166 (297)
                      .|++++|+..+++++.+.|.......               ... ...  ....   ..+.  +.++|+  .+.++.++|
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999999999999998774322110               000 000  0000   0111  355665  467788899


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      .++..+|++++|+.+|++++..+|+++. +.++|.+|..+|++++|+..|++++...
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  236 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  236 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence            9999999999999999999999999988 8899999999999999999999999873

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.8e-22  Score=174.68  Aligned_cols=213  Identities=16%  Similarity=0.107  Sum_probs=165.3

Q ss_pred             cccccchhhhhhh-hhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442            9 KIFSSKKEDLFHV-IHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus         9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      .+.-......|.. +..-|....++..++.++...|++++|+..|.+++.++|++..++..+|.++..+|++++|++.++
T Consensus        32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            3444556677744 444577777899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCcchHHH-------HHH------HHHHHHHHcCCHHHHHHHHHHHHHhhchhh---hhcCcchhHHhhhh---h
Q 022442           88 SFRGLCSKQSQES-------LDN------VLIDLYKKCGKVEEQIEMLKRKLRLIYQGE---AFNGKPTKTARSHG---K  148 (297)
Q Consensus        88 ~al~~~P~~~~~~-------l~~------~L~~ly~~~g~~~eAi~~~~~al~~~p~~~---~~~~~~~~~~~~~~---~  148 (297)
                      +++...|......       ...      .....+...+.+.+|+..|++++++.|...   .+. .........+   .
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~-~l~~~~~~~~~~~~  190 (323)
T d1fcha_         112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC-GLGVLFNLSGEYDK  190 (323)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH-HHHHHHHHTTCHHH
T ss_pred             hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch-hhHHHHHHHHHHhh
Confidence            9999888521100       000      011233456778888999999888876421   111 0000000111   1


Q ss_pred             ---hHH--HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          149 ---KFQ--VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       149 ---~~~--~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                         .+.  +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|+++. +++||.+|..+|++++|+..|++++...
T Consensus       191 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         191 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence               111  4678999999999999999999999999999999999999998 9999999999999999999999999873

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-21  Score=174.03  Aligned_cols=199  Identities=19%  Similarity=0.178  Sum_probs=166.1

Q ss_pred             hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           20 HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      ..+...|....++...+......|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++....|..+  
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--  237 (388)
T d1w3ba_         160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA--  237 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--
T ss_pred             HhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH--
Confidence            344555666667888888888999999999999999999999999999999999999999999999999999999743  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhcCcchhHHhhhh------hhH--HHhcCCCcHHHHHHHHHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFNGKPTKTARSHG------KKF--QVSVRQETSRLLGNLAWAYM  170 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~~~~~~~~~~~~------~~~--~~~l~p~~~~~l~nLg~~y~  170 (297)
                      .....+|.+|...|++++|+..|++++++.|... ++.. ........+      ..+  .+...|..+.++..+|.+|.
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            3455689999999999999999999999987532 1110 000000001      011  14667899999999999999


Q ss_pred             HCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          171 QKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       171 ~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|++++|+.+|+++++++|+++. +.+||.+|..+|++++|+..|++++..
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998 999999999999999999999999997

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-21  Score=169.09  Aligned_cols=266  Identities=18%  Similarity=0.140  Sum_probs=191.9

Q ss_pred             cccccccchhhhh-hhhhcCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHH
Q 022442            7 NKKIFSSKKEDLF-HVIHKVPAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEA   85 (297)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~   85 (297)
                      +++|.-......| ..+...|....++..++.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~   89 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccc
Confidence            3455555666667 445555766677888888888899999999999999999999999999999999999999999988


Q ss_pred             HHHHHhhCCcchH------------------------------------------------------------------H
Q 022442           86 IKSFRGLCSKQSQ------------------------------------------------------------------E   99 (297)
Q Consensus        86 ~~~al~~~P~~~~------------------------------------------------------------------~   99 (297)
                      +..+....|....                                                                  .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T d1w3ba_          90 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA  169 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchh
Confidence            8877766653110                                                                  1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhh-hhc--CcchhHHhhhhh---hHH--HhcCCCcHHHHHHHHHHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGE-AFN--GKPTKTARSHGK---KFQ--VSVRQETSRLLGNLAWAYMQ  171 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~-~~~--~~~~~~~~~~~~---~~~--~~l~p~~~~~l~nLg~~y~~  171 (297)
                      .....+|.++...|++++|+..+++++++.|... ++.  +...........   .+.  ..+.|..+..+.++|.+|..
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence            2334467788888999999999999998876432 111  000000000000   111  46678888999999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------chhhHHHHHHHHH
Q 022442          172 KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCE----------DGRTRKRAEELLL  240 (297)
Q Consensus       172 ~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~----------~~~~~~~a~~~l~  240 (297)
                      +|++++|+.+|+++++++|+++. +.++|.++..+|++++|+..+++++...+....          ....++.|...+.
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  329 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR  329 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999998 899999999999999999999998886332211          2345667777777


Q ss_pred             HHHhcCC-CCchhhhhcccc-----hhHHHHHHHHHHh
Q 022442          241 ELESKQP-PPDLSDLLGLNL-----EDEFVNGLEEMVR  272 (297)
Q Consensus       241 ~~~~~~~-~~~~~~~~~~~~-----~d~~~~~~~~~l~  272 (297)
                      ......| .+.+...+|..+     ++++.+.|+..+.
T Consensus       330 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6544333 455666666665     4677777777664

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-20  Score=167.27  Aligned_cols=164  Identities=12%  Similarity=0.006  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-hHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRGLCSKQSQESLDNVLIDLY  109 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~-~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly  109 (297)
                      ++...+.+....+.+++|+.++++||.++|.+..+|++.|.++..+|+ +++|+..+++++..+|+..  .+++.+|.++
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~--~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--QVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--hHHHHHhHHH
Confidence            344556677788999999999999999999999999999999999886 8999999999999999854  4556689999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Q 022442          110 KKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       110 ~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~  189 (297)
                      ..+|++++|+..++++++++|                          ++..++.++|+++..+|++++|+.+|+++++++
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp--------------------------~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDA--------------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HhhccHHHHHHHHhhhhhhhh--------------------------cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence            999999999999999999854                          566788899999999999999999999999999


Q ss_pred             CCcHH-HhHHHHHHHHcCC------HHHHHHHHHHHHhcC
Q 022442          190 PDANK-ACNLGLCLIKRTR------YNEARSVLEDVLYGR  222 (297)
Q Consensus       190 P~~~~-~~nLg~~l~~~g~------~~eA~~~~~~al~~~  222 (297)
                      |++.. |.++|.++...|+      +++|+..+.+++...
T Consensus       177 p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         177 VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC
Confidence            98887 8888888888776      578888888888873

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.8e-18  Score=147.95  Aligned_cols=205  Identities=11%  Similarity=-0.070  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYK  110 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~  110 (297)
                      .++..|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.++|+++  ..+..+|.+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh--hhHHHHHHHHH
Confidence            5777788999999999999999999999999999999999999999999999999999999999854  35556899999


Q ss_pred             HcCCHHHHHHHHHHHHHhhchhhhhc-Cc-chhHHhhhhh---hH-H--HhcCCCcHHHHHHHHHHH----HHCCChHHH
Q 022442          111 KCGKVEEQIEMLKRKLRLIYQGEAFN-GK-PTKTARSHGK---KF-Q--VSVRQETSRLLGNLAWAY----MQKTNFMAA  178 (297)
Q Consensus       111 ~~g~~~eAi~~~~~al~~~p~~~~~~-~~-~~~~~~~~~~---~~-~--~~l~p~~~~~l~nLg~~y----~~~g~~~eA  178 (297)
                      .+|++++|+..|++++++.|...... .. ..........   .+ .  ....+...  ..++...+    ...+.++.+
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGNISEQTLMERL  194 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987432111 00 0000000000   00 0  12222221  11122222    223456777


Q ss_pred             HHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q 022442          179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRKRAEELLLEL  242 (297)
Q Consensus       179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~a~~~l~~~  242 (297)
                      ...+..++...|+... +++||.+|..+|++++|+..|++++..   .|.+...+..+...|..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~a~~~L~~l  256 (259)
T d1xnfa_         195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHNFVEHRYALLELSLL  256 (259)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHh
Confidence            7777888888888887 899999999999999999999999997   344433344444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-18  Score=155.20  Aligned_cols=180  Identities=9%  Similarity=0.001  Sum_probs=153.6

Q ss_pred             cchhhhhhhhhcC-CCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442           13 SKKEDLFHVIHKV-PAGDGPYVRAKHAQLVQK-DPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR   90 (297)
Q Consensus        13 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al   90 (297)
                      .+.-+.|..+.++ |...+++..-+.+....| ++++|+.+++++++.+|++..+|+++|.++..+|++++|++.+++++
T Consensus        60 ~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal  139 (315)
T d2h6fa1          60 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL  139 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhh
Confidence            3444566444444 666667777777766544 69999999999999999999999999999999999999999999999


Q ss_pred             hhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH
Q 022442           91 GLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM  170 (297)
Q Consensus        91 ~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~  170 (297)
                      .++|++.  ..+..+|.++...|++++|+..|+++|+++                          |.+..+|+++|.++.
T Consensus       140 ~~dp~n~--~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--------------------------p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         140 NQDAKNY--HAWQHRQWVIQEFKLWDNELQYVDQLLKED--------------------------VRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHCTTCH--HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHH
T ss_pred             hhhhcch--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--------------------------CccHHHHHHHHHHHH
Confidence            9999854  455568999999999999999999999985                          457789999999999


Q ss_pred             HCCC------hHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          171 QKTN------FMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       171 ~~g~------~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+++      +++|+..|.+++.++|++.. |.+++.++...| .+++...+++++..
T Consensus       192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             HccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence            9887      57999999999999999998 999998866544 68899999999876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.8e-16  Score=135.20  Aligned_cols=150  Identities=13%  Similarity=-0.002  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 022442           44 DPEAAIVLFWKAINA----GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQI  119 (297)
Q Consensus        44 ~~~~A~~~~~~al~~----~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi  119 (297)
                      +.+.|+..+.+++..    +|..+.+++++|.+|..+|++++|+..|++++.++|+++  ..++.+|.+|..+|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~--~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH--HHHhhhchHHHHHHHHHHhh
Confidence            455677777888764    344667999999999999999999999999999999854  45666999999999999999


Q ss_pred             HHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHH
Q 022442          120 EMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNL  198 (297)
Q Consensus       120 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nL  198 (297)
                      ..|++++++.|                          +++.++.++|.+|..+|++++|+..|+++++++|++.. ...+
T Consensus        92 ~~~~~al~~~p--------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          92 EAFDSVLELDP--------------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HHHHHHHHHCT--------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHHh--------------------------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            99999999854                          56679999999999999999999999999999999987 7788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q 022442          199 GLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       199 g~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.++...+..+.+..........
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcc
Confidence            88888888777666666655554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.9e-16  Score=130.29  Aligned_cols=148  Identities=17%  Similarity=0.097  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      ++.-|..+...|++++|+..|.+   +.|.++.+++++|.++..+|++++|++.|+++++++|+++  ..++.+|.+|.+
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~--~a~~~~g~~~~~   82 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh--hhHHHHHHHHHh
Confidence            44557778899999999999986   3566788999999999999999999999999999999854  466669999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPD  191 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~  191 (297)
                      +|++++|+..|++++...+........          ...+..+.....+++++|.+|..+|++++|+..|.+|+.+.|+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~----------~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYK----------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECG----------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHH----------HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999875532211100          0001111223568999999999999999999999999999998


Q ss_pred             cHH
Q 022442          192 ANK  194 (297)
Q Consensus       192 ~~~  194 (297)
                      ...
T Consensus       153 ~~~  155 (192)
T d1hh8a_         153 PRH  155 (192)
T ss_dssp             GGG
T ss_pred             cch
Confidence            643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-16  Score=119.95  Aligned_cols=109  Identities=15%  Similarity=0.074  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      +...|..+...|++++|+..|++++..+|.++  .++..+|.+|..+|++++|+..|++++++.                
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------   67 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----------------   67 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch--hhhhcccccccccccccccchhhhhHHHhc----------------
Confidence            56678888888888888888888888888753  456667888888888888888888888874                


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL  202 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l  202 (297)
                                |+++.++.++|.+|..+|++++|+.+|+++++++|+++. +.+++.+.
T Consensus        68 ----------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          68 ----------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ----------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence                      456778888888888899999999999999988888887 77777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7e-16  Score=123.58  Aligned_cols=124  Identities=16%  Similarity=0.061  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      +.+...|..+.+.|+|++|+..|++++.++|+++  ..+..+|.+|...|++++|+..|+++|+++              
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--------------   74 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELD--------------   74 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh--hhhhhhHHHHHhccccchHHHHHHHHHHHc--------------
Confidence            3466789999999999999999999999999853  456668999999999999999999999985              


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHH--HHcCCHHHHHHHH
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCL--IKRTRYNEARSVL  215 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l--~~~g~~~eA~~~~  215 (297)
                                  |++..++.++|.+|..+|++++|+.+|++++.++|+++. ...++.+.  ...+.+++|+...
T Consensus        75 ------------p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          75 ------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                        457789999999999999999999999999999999998 76776664  4445566666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-15  Score=126.38  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhh
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARS  145 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~  145 (297)
                      +++.|..+...|++++|++.|+++   .|.++  .+++.+|.+|..+|++++|+..|+++|+++                
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld----------------   66 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHS--RICFNIGCMYTILKNMTEAEKAFTRSINRD----------------   66 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHh----------------
Confidence            457799999999999999999864   33332  345568999999999999999999999984                


Q ss_pred             hhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH----------------H-HhHHHHHHHHcCCH
Q 022442          146 HGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN----------------K-ACNLGLCLIKRTRY  208 (297)
Q Consensus       146 ~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~----------------~-~~nLg~~l~~~g~~  208 (297)
                                |+++.+++++|.+|.++|++++|+..|++|+...|.+.                . ++++|.++..+|++
T Consensus        67 ----------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~  136 (192)
T d1hh8a_          67 ----------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW  136 (192)
T ss_dssp             ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred             ----------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence                      46788999999999999999999999999998766542                3 57899999999999


Q ss_pred             HHHHHHHHHHHhc
Q 022442          209 NEARSVLEDVLYG  221 (297)
Q Consensus       209 ~eA~~~~~~al~~  221 (297)
                      ++|+..+++++..
T Consensus       137 ~~A~~~l~~A~~~  149 (192)
T d1hh8a_         137 KKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999987

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.8e-16  Score=130.38  Aligned_cols=122  Identities=11%  Similarity=-0.024  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhH
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKT  142 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~  142 (297)
                      ++.+...|..+.+.|+|++|+..|++++.++|+++  .+++.+|.+|.+.|++++|+..|+++|++.             
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~--~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------------   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELD-------------   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------------
Confidence            45678889999999999999999999999999853  466668999999999999999999998874             


Q ss_pred             HhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHH
Q 022442          143 ARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEAR  212 (297)
Q Consensus       143 ~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~  212 (297)
                                   |+++.++.++|.+|..+|++++|+..|++|++++|++.. +..++..+...+....+.
T Consensus        69 -------------p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  126 (201)
T d2c2la1          69 -------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  126 (201)
T ss_dssp             -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred             -------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHH
Confidence                         457778999999999999999999999999999988776 655555555554444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=3.1e-15  Score=131.14  Aligned_cols=170  Identities=14%  Similarity=0.100  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINA------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l  101 (297)
                      |.+++.++...|++++|+..|.+|+.+      .+....++.++|.+|.++|++++|+..|++++.+.+..    .....
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            778888999999999999999999986      23346789999999999999999999999998876631    12234


Q ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          102 DNVLIDLYKK-CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       102 ~~~L~~ly~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ...+|.+|.. .|++++|+..|++++++.+...              ..      +....++.++|.+|..+|+|++|+.
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--------------~~------~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------SV------ALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------CH------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--------------ch------hhhhhHHHHHHHHHHHcChHHHHHH
Confidence            4557777755 6999999999999999854210              00      0123578999999999999999999


Q ss_pred             HHHHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          181 VYQKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       181 ~y~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|++++...|.+..        +.++|.++...|+++.|...+++++..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999887752        357899999999999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-15  Score=115.22  Aligned_cols=92  Identities=20%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ..|..+...|++++|+.+|+++|+++                          |+++.++.++|.+|..+|++++|+..|.
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~   61 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGC   61 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------Ccchhhhhcccccccccccccccchhhh
Confidence            36888899999999999999999985                          4677899999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++++++|+++. ++++|.++..+|++++|+..|++++..
T Consensus        62 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999998 999999999999999999999999997

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.2e-15  Score=117.54  Aligned_cols=125  Identities=11%  Similarity=-0.020  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      +..-|..++..|++++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+++  ..+..+|.+|..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~--~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch--HHHHHHHHHHHH
Confidence            344466788999999999999999999999999999999999999999999999999999999854  345668999999


Q ss_pred             cCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH--HHCCChHHHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY--MQKTNFMAAEVVYQK  184 (297)
Q Consensus       112 ~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y--~~~g~~~eA~~~y~~  184 (297)
                      .|++++|+..|++++.+.|                          +++.++..++.+.  ...+.+++|+.....
T Consensus        91 ~g~~~eA~~~~~~a~~~~p--------------------------~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKP--------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            9999999999999999854                          4556666776664  344556666654333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-14  Score=116.97  Aligned_cols=124  Identities=17%  Similarity=0.145  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcch-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQS-------------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~-------------~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      +..+...|..+..+|++++|+..|++++...|...             ...+++.+|.+|.++|++++|+..++++|+++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            34567889999999999999999999988877310             12334568899999999999999999999985


Q ss_pred             chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442          130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  208 (297)
Q Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~  208 (297)
                                                |+++.+++++|.+|..+|++++|+..|++|++++|+++. ...++.+....++.
T Consensus        93 --------------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 --------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                                      457789999999999999999999999999999999998 77888888777766


Q ss_pred             HHHH
Q 022442          209 NEAR  212 (297)
Q Consensus       209 ~eA~  212 (297)
                      .+..
T Consensus       147 ~~~e  150 (170)
T d1p5qa1         147 LARE  150 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.2e-17  Score=143.55  Aligned_cols=197  Identities=9%  Similarity=-0.156  Sum_probs=129.2

Q ss_pred             hcCCCCCcHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHHCCChHHHHHHHHHHHhhCCcchHH
Q 022442           23 HKVPAGDGPYVRAKHAQLV--QKDPEAAIVLFWKAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQE   99 (297)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~-~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~   99 (297)
                      ...|....++...+.+...  .+++++|+..+.+++..+|+...++ +.+|.++...|++++|+..+++++..+|.+.  
T Consensus       101 ~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~--  178 (334)
T d1dcea1         101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY--  178 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH--
T ss_pred             HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH--
Confidence            3344444444444444332  3346666666666666666665554 3455666666666666666666666666532  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhh--hh--HHHhcCCCcHHHHHHHHHHHHHCCCh
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHG--KK--FQVSVRQETSRLLGNLAWAYMQKTNF  175 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~--~~~~l~p~~~~~l~nLg~~y~~~g~~  175 (297)
                      ..++.+|.++...|++++|+..+++++++.|.................  ..  ..+..+|.....+.++|.++...|++
T Consensus       179 ~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH
Confidence            334446666666666666666666666654422110000000000000  00  11456777777888999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+|+..|.+++..+|++.. +..+|.+|..+|++++|+.+|++++..
T Consensus       259 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998 999999999999999999999999998

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3.9e-15  Score=122.17  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ..|..|.+.|+|++|+..|+++|+++                          |+++.++.++|.+|..+|++++|+.+|+
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~--------------------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~   62 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQPEQALADCR   62 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHhHHHHHhhhhhhhhhhHHHH
Confidence            47899999999999999999999985                          4678899999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +|++++|+++. +++||.+|..+|++++|+..|++++..
T Consensus        63 ~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999998 999999999999999999999999986

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.60  E-value=5.6e-15  Score=111.67  Aligned_cols=90  Identities=16%  Similarity=0.064  Sum_probs=85.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      .+|..+.+.|++++|+..|++++++.                          |+++.++.+||.+|..+|++++|+.+|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~   74 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLAIIALN   74 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc--------------------------cccchhhhhhhhhhhhhhhHHHhhcccc
Confidence            46888999999999999999999984                          4678899999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      ++++++|++.. +++||.+|..+|++++|+..++++|
T Consensus        75 ~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          75 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999998 9999999999999999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.56  E-value=2.2e-15  Score=119.41  Aligned_cols=117  Identities=15%  Similarity=0.036  Sum_probs=88.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM  121 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~  121 (297)
                      .+.+++|+..|+++++++|+++++++++|.++...+++..+.+                          ..+.+++|+..
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~Ai~~   63 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQEAITK   63 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHHHHHH
Confidence            3457888888888888888888888888888876555444433                          12345778888


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCC-----------hHHHHHHHHHHHHhCC
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTN-----------FMAAEVVYQKAQMIDP  190 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~-----------~~eA~~~y~~Al~~~P  190 (297)
                      |+++|+++                          |+++.+++++|.+|..+|+           |++|+.+|++|++++|
T Consensus        64 ~~kAl~l~--------------------------P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          64 FEEALLID--------------------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhc--------------------------chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            88888774                          4567788888888877654           7999999999999999


Q ss_pred             CcHH-HhHHHHHHHHcCCHHH
Q 022442          191 DANK-ACNLGLCLIKRTRYNE  210 (297)
Q Consensus       191 ~~~~-~~nLg~~l~~~g~~~e  210 (297)
                      ++.. +.+|+.+....+.+.+
T Consensus       118 ~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         118 DNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             TCHHHHHHHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            9998 8889988644444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=9.4e-14  Score=112.07  Aligned_cols=119  Identities=15%  Similarity=0.050  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHhhCCcc--------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhch
Q 022442           66 LKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ--------------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQ  131 (297)
Q Consensus        66 ~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~--------------~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~  131 (297)
                      +...|..+...|++++|+..|++++...+..              ........+|.+|.+.|++++|+..|+++|++.  
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--  107 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--  107 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--
Confidence            3445666666666666666666655443210              012233445666666677777777666666653  


Q ss_pred             hhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHH
Q 022442          132 GEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNE  210 (297)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~e  210 (297)
                                              |+++.+++++|.+|..+|++++|+..|+++++++|++.. ...|+.+........+
T Consensus       108 ------------------------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         108 ------------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                    345566666777777777777777777777777776665 5566666554444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.53  E-value=1.1e-13  Score=110.23  Aligned_cols=61  Identities=23%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++.|+|.+|.++|++++|+..|++||+++|++.. ++++|.++..+|++++|+..|++++..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445555555555555555555555555555554 555555555555555555555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=2.4e-13  Score=109.74  Aligned_cols=122  Identities=16%  Similarity=0.097  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-------------SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLI  129 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-------------~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~  129 (297)
                      +..+...|..+...|++.+|+..|++++...|..             ....+++++|.+|..+|++++|+..++++|+++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            3456778888888888888888888887654421             012334457888888999999999888888874


Q ss_pred             chhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCH
Q 022442          130 YQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRY  208 (297)
Q Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~  208 (297)
                      |                          ++..+++++|.+|..+|++++|+..|++++.++|+++. ...++.+....+.+
T Consensus        95 p--------------------------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 S--------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             T--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             c--------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            3                          56678888999999999999999999999999998887 77778777666655


Q ss_pred             HH
Q 022442          209 NE  210 (297)
Q Consensus       209 ~e  210 (297)
                      .+
T Consensus       149 ~e  150 (168)
T d1kt1a1         149 NE  150 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=110.78  Aligned_cols=110  Identities=12%  Similarity=-0.019  Sum_probs=76.2

Q ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhchhhhhcCcchhHHh
Q 022442           68 DMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCG---KVEEQIEMLKRKLRLIYQGEAFNGKPTKTAR  144 (297)
Q Consensus        68 ~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g---~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~  144 (297)
                      +++..+...+++++|++.|++++.++|+++  ...+.+|.++.+.+   ++++|+.+|++++...|.             
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~--~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-------------   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-------------   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-------------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-------------
Confidence            456666777777777777777777777643  34444676666543   344677778777776431             


Q ss_pred             hhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHH
Q 022442          145 SHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLI  203 (297)
Q Consensus       145 ~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~  203 (297)
                                 |+...++++||.+|.++|++++|+.+|+++|+++|++.. ...++.+..
T Consensus        69 -----------~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          69 -----------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -----------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence                       112347888888888889999999999999888888887 555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=1.2e-13  Score=111.45  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=90.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Q 022442          104 VLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQ  183 (297)
Q Consensus       104 ~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~  183 (297)
                      ..|..+...|++++|+..|+++|++.+......          ...-...++|....++.|+|.+|.++|++++|+..|.
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~  101 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA----------EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  101 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS----------CHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh----------hhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhh
Confidence            357778999999999999999999854221110          0001134456677899999999999999999999999


Q ss_pred             HHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          184 KAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       184 ~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +||+++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus       102 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999998 999999999999999999999999998

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5e-15  Score=139.83  Aligned_cols=202  Identities=9%  Similarity=-0.003  Sum_probs=125.8

Q ss_pred             hhhhhhhhcC-CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 022442           16 EDLFHVIHKV-PAGDGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCS   94 (297)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P   94 (297)
                      ...|+....+ |+...++..++.++...|++++|   |+++|..+|+.+.++...+.+..  ..+..+++.++...+...
T Consensus         6 ~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~~~   80 (497)
T d1ya0a1           6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAKNRA   80 (497)
T ss_dssp             HHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhccccc
Confidence            3444444444 44444555556666666666654   77777777777666544443332  235566777776665432


Q ss_pred             c-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhh-hc--CcchhHHhhhh---hhHHHhcCCCcHHHHHHHHH
Q 022442           95 K-QSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEA-FN--GKPTKTARSHG---KKFQVSVRQETSRLLGNLAW  167 (297)
Q Consensus        95 ~-~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~-~~--~~~~~~~~~~~---~~~~~~l~p~~~~~l~nLg~  167 (297)
                      . +........++.++...|.|+.|+..|++++.+.|+... +.  |..........   ..+...+.++...++.+||.
T Consensus        81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~  160 (497)
T d1ya0a1          81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGD  160 (497)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            2 111122334566777888999999999998888664321 11  11000000000   01112333445678999999


Q ss_pred             HHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022442          168 AYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGR  222 (297)
Q Consensus       168 ~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~  222 (297)
                      ++..+|++++|+.+|++|++++|++.. +++||.++...|++.+|+.+|.+++...
T Consensus       161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999998 9999999999999999999999999973

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.1e-13  Score=122.86  Aligned_cols=125  Identities=6%  Similarity=-0.059  Sum_probs=97.4

Q ss_pred             HcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           41 VQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        41 ~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~--~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ..|++++|+.+|+++++.+|++..+|+.+|.++...++  +++|+..+++++..+|+... .+...+|.++...|++++|
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH-CWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh-hhhhHHHHHHHhccccHHH
Confidence            44668999999999999999999999999999988876  79999999999999998543 3445578899999999999


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCc
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDA  192 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~  192 (297)
                      +..++++++++|                          ++..+++++|.++..+|++++|+..+++++.+.|.+
T Consensus       164 l~~~~~~i~~~p--------------------------~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  211 (334)
T d1dcea1         164 LAFTDSLITRNF--------------------------SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (334)
T ss_dssp             HHHHHTTTTTTC--------------------------CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             HHHHHHHHHcCC--------------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH
Confidence            999999999865                          344556666666666666555555544444444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.6e-13  Score=108.97  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ...|..+++.|++++|+..|+++|.+.|...........    ...       +-...++.|+|.||..+|++++|+..+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~----~~~-------~~~~~~~~nla~~y~k~~~~~~A~~~~   85 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ----KAQ-------ALRLASHLNLAMCHLKLQAFSAAIESC   85 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH----HHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh----hhc-------hhHHHHHHHHHHHHHhhhhcccccchh
Confidence            346888999999999999999999987633221110000    000       012347889999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++||+++|+++. ++++|.+|..+|++++|+..|++++..
T Consensus        86 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          86 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            999999999998 999999999999999999999999998

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.48  E-value=1.6e-13  Score=103.42  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK  111 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~  111 (297)
                      .+..|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|++.  .....||.+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc--cchHHHHHHHHH
Confidence            356788888999999999999999999999999999999999999999999999999999999854  455669999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 022442          112 CGKVEEQIEMLKRKL  126 (297)
Q Consensus       112 ~g~~~eAi~~~~~al  126 (297)
                      +|++++|++.+++.|
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999976

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=2e-13  Score=108.56  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=49.9

Q ss_pred             HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHc
Q 022442          152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKR  205 (297)
Q Consensus       152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~  205 (297)
                      +.++|++..+++++|.+|..+|++++|+.+|+++++++|++.. ..+++.+..++
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999998 77888876554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=105.17  Aligned_cols=93  Identities=14%  Similarity=0.009  Sum_probs=80.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCC
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDR---SEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGK  114 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~---~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~  114 (297)
                      ..+..+++++|++.|++++..+|+++++++++|.++...++   +++|+..|++++..+|........+.||.+|.+.|+
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~   87 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Confidence            45567899999999999999999999999999999987554   557999999999998864333455669999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 022442          115 VEEQIEMLKRKLRLIY  130 (297)
Q Consensus       115 ~~eAi~~~~~al~~~p  130 (297)
                      +++|+.+|+++|++.|
T Consensus        88 ~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          88 YEKALKYVRGLLQTEP  103 (122)
T ss_dssp             HHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhCc
Confidence            9999999999999855

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-13  Score=105.66  Aligned_cols=93  Identities=15%  Similarity=0.180  Sum_probs=83.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      ..+|+.|...|+|++|+.+|+++|++.|                          +++.++.++|.+|.++|+|++|+..|
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~   61 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDP--------------------------TNMTYITNQAAVYFEKGDYNKCRELC   61 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------------ccHHHHHhHHHHHHHcCchHHHHHHH
Confidence            3478899999999999999999999854                          56789999999999999999999999


Q ss_pred             HHHHHhCCCcHH--------HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK--------ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~--------~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ++|++++|++..        +.++|.++..++++++|+.+|++++..
T Consensus        62 ~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999998764        346788889999999999999999986

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.4e-13  Score=103.35  Aligned_cols=111  Identities=9%  Similarity=0.123  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHH
Q 022442           64 SALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTA  143 (297)
Q Consensus        64 ~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~  143 (297)
                      ..+.++|..+...|+|++|+..|++++.++|+++  .+...+|.+|.++|++++|+..++++|++.|.....        
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--------   74 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--------   74 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--------
Confidence            4577899999999999999999999999999853  466668999999999999999999999997632100        


Q ss_pred             hhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHHH
Q 022442          144 RSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANKA  195 (297)
Q Consensus       144 ~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~~  195 (297)
                            .     +....++.++|.++..++++++|+.+|++++..+|+....
T Consensus        75 ------~-----~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~  115 (128)
T d1elra_          75 ------Y-----RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL  115 (128)
T ss_dssp             ------H-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ------H-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Confidence                  0     0123588999999999999999999999999998875433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=7.3e-13  Score=106.80  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=87.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      .-.|..+++.|+|++|+..|+++|...+......   ..        ......+-...++.|+|.||..+|++++|+..+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~---~~--------~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS---EK--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC---HH--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc---hh--------hhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            3468888999999999999999999854211000   00        000011112457889999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      .+++.++|++.. ++++|.+|..+|++++|+..|++++..
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999998 999999999999999999999999998

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.2e-12  Score=114.24  Aligned_cols=172  Identities=13%  Similarity=0.058  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHH-CCChHHHHHHHHHHHhhCCcc----hHH
Q 022442           31 PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRV------DSALKDMAVVMKQ-LDRSEEAIEAIKSFRGLCSKQ----SQE   99 (297)
Q Consensus        31 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~Lg~~l~~-~g~~~eAi~~~~~al~~~P~~----~~~   99 (297)
                      .+..++.++...|++++|+..|++++.+.+..      ..++.++|.++.. .|++++|+..|++++.+.+..    ...
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            57888899999999999999999999864443      5678899988854 699999999999998875531    112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHH
Q 022442          100 SLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAE  179 (297)
Q Consensus       100 ~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~  179 (297)
                      .....+|.+|..+|++++|+..|++++...+......                   ......+.++|.++...|+++.|.
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~d~~~A~  219 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ-------------------WSLKDYFLKKGLCQLAATDAVAAA  219 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG-------------------GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh-------------------hhHHHHHHHHHHHHHHhccHHHHH
Confidence            3456689999999999999999999999865321100                   012346788999999999999999


Q ss_pred             HHHHHHHHhCCCcHH------HhHHHHHHHH--cCCHHHHHHHHHHHHhc
Q 022442          180 VVYQKAQMIDPDANK------ACNLGLCLIK--RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       180 ~~y~~Al~~~P~~~~------~~nLg~~l~~--~g~~~eA~~~~~~al~~  221 (297)
                      ..+.++++++|....      ...|..++..  .+++++|+..|.++...
T Consensus       220 ~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            999999999997653      2345555554  35799999999876654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.8e-11  Score=105.96  Aligned_cols=168  Identities=13%  Similarity=0.025  Sum_probs=135.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc----hHHHHHHHHH
Q 022442           36 KHAQLVQKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ----SQESLDNVLI  106 (297)
Q Consensus        36 ~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~----~~~~l~~~L~  106 (297)
                      ..+++..|++++|+.+|++++...|..     ..++..+|.++..+|++++|+..|++++.+.|..    ........++
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            456788999999999999999998876     3578899999999999999999999998876531    1123345678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 022442          107 DLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQ  186 (297)
Q Consensus       107 ~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al  186 (297)
                      .++...|++..|+..+.+++.+.+....                  ...+....++..+|.++...|++++|...|++++
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~  160 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHL------------------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  160 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTC------------------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhccc------------------chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            9999999999999999999987531100                  0001123467889999999999999999999999


Q ss_pred             HhCCCcH-----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          187 MIDPDAN-----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       187 ~~~P~~~-----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ...+...     . ...++.++...|++.++...+.++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  201 (366)
T d1hz4a_         161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  201 (366)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9877543     2 457889999999999999999988865

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=129.48  Aligned_cols=139  Identities=9%  Similarity=0.044  Sum_probs=93.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHH
Q 022442           37 HAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVE  116 (297)
Q Consensus        37 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~  116 (297)
                      .+....+.++.|+..|++++.++|+...++.++|.++...|++++|+..+++++..+|.    .....||+++...|+++
T Consensus        94 ~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH----HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHcccHH
Confidence            34445677888888888888999999999999999999999999999999999888764    24455899999999999


Q ss_pred             HHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-H
Q 022442          117 EQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-A  195 (297)
Q Consensus       117 eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~  195 (297)
                      +|+..|++|+++.|                          ++..++++||.+|...|++.+|+.+|.+|+.++|.++. +
T Consensus       170 ~A~~~y~~A~~l~P--------------------------~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~  223 (497)
T d1ya0a1         170 QAESYYRHAAQLVP--------------------------SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHHHCT--------------------------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             HHHHHHHHHHHHCC--------------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence            99999999999854                          56779999999999999999999999999999999998 8


Q ss_pred             hHHHHHHHHc
Q 022442          196 CNLGLCLIKR  205 (297)
Q Consensus       196 ~nLg~~l~~~  205 (297)
                      .||+.++.+.
T Consensus       224 ~nL~~~~~~~  233 (497)
T d1ya0a1         224 TNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999888754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.36  E-value=2.4e-12  Score=102.33  Aligned_cols=116  Identities=10%  Similarity=-0.010  Sum_probs=87.4

Q ss_pred             HHHHHHH--HHHHHHCCChHHHHHHHHHHHhhCCcch----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 022442           63 DSALKDM--AVVMKQLDRSEEAIEAIKSFRGLCSKQS----------QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIY  130 (297)
Q Consensus        63 ~~a~~~L--g~~l~~~g~~~eAi~~~~~al~~~P~~~----------~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p  130 (297)
                      ..++..+  |..+...|+|++|+..|++++.++|+.+          ....++.+|.+|..+|++++|+..++++|++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455555  7788888999999999999998877421          123456789999999999999999999999865


Q ss_pred             hhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcH
Q 022442          131 QGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDAN  193 (297)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~  193 (297)
                      .....+.          ..     .|....+++++|.+|..+|++++|+..|++|+++.|+..
T Consensus        87 ~~~~~~~----------~~-----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          87 RRGELNQ----------DE-----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHCCTTS----------TH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccc----------cc-----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            2111100          00     011345789999999999999999999999999977554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=5.8e-11  Score=104.15  Aligned_cols=152  Identities=10%  Similarity=-0.016  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 022442           43 KDPEAAIVLFWKAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEM  121 (297)
Q Consensus        43 g~~~~A~~~~~~al~-~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~  121 (297)
                      +..++|...|++++. ..|.....|...+.++..+|++++|...|++++...|.+.. .+...++.+..+.|.+++|..+
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHH
Confidence            456889999999997 47888889999999999999999999999999999997532 3445567888999999999999


Q ss_pred             HHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHH-HHCCChHHHHHHHHHHHHhCCCcHH-HhHHH
Q 022442          122 LKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAY-MQKTNFMAAEVVYQKAQMIDPDANK-ACNLG  199 (297)
Q Consensus       122 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y-~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg  199 (297)
                      |+++++..|                          .....+...|... ...|+.+.|..+|++++...|+++. |...+
T Consensus       157 ~~~al~~~~--------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         157 FKKAREDAR--------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             HHHHHTSTT--------------------------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCC--------------------------CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999998754                          2345666777664 4568999999999999999999998 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Q 022442          200 LCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       200 ~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+...|+++.|..+|++++..
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHcCChHHHHHHHHHHHHh
Confidence            9999999999999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=1.4e-12  Score=102.76  Aligned_cols=87  Identities=10%  Similarity=0.117  Sum_probs=77.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC----------CChHHH
Q 022442          109 YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK----------TNFMAA  178 (297)
Q Consensus       109 y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~----------g~~~eA  178 (297)
                      |.+.++|++|+..|+++++++                          |+++.+++++|.+|..+          +.+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--------------------------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~A   60 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--------------------------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEA   60 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--------------------------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            567788999999999999984                          56888999999999854          556899


Q ss_pred             HHHHHHHHHhCCCcHH-HhHHHHHHHHcCC-----------HHHHHHHHHHHHhc
Q 022442          179 EVVYQKAQMIDPDANK-ACNLGLCLIKRTR-----------YNEARSVLEDVLYG  221 (297)
Q Consensus       179 ~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~-----------~~eA~~~~~~al~~  221 (297)
                      +..|++|++++|+++. +++||.+|..+|+           +++|+..|++++..
T Consensus        61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            9999999999999998 9999999998864           68999999999987

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.3e-12  Score=91.05  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 022442          103 NVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVY  182 (297)
Q Consensus       103 ~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y  182 (297)
                      +.+|.++.+.|+|++|+..|++|+++.|....                   ..++.+.++.+||.+|.++|++++|+.+|
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-------------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y   69 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLT   69 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-------------------cCccHHHHHHHHhhHHHhcCChHHHHHHH
Confidence            34788999999999999999999998653210                   01234578999999999999999999999


Q ss_pred             HHHHHhCCCcHH-HhHHHHHHHH
Q 022442          183 QKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       183 ~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                      +++|+++|+++. +.||+.+...
T Consensus        70 ~~aL~l~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          70 KKLLELDPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999998 8899876544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=6e-11  Score=102.63  Aligned_cols=168  Identities=14%  Similarity=0.070  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCc-----chHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDR-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSK-----QSQESL  101 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~-----~~~~~l  101 (297)
                      +...+.++...|+++.|...+++++...+.     ...++..++.++...|.+.++...+..+....+.     .....+
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            444566778899999999999999986544     4567888999999999999999999887765442     112234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHH
Q 022442          102 DNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVV  181 (297)
Q Consensus       102 ~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~  181 (297)
                      ...++.++...|++++|+..++++++..+...                      +.....+.++|.+|..+|++++|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------~~~~~~~~~la~~~~~~g~~~~A~~~  273 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANN----------------------HFLQGQWRNIARAQILLGEFEPAEIV  273 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC----------------------GGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccc----------------------hHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            56678899999999999999999888754211                      11234678899999999999999999


Q ss_pred             HHHHHHh------CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          182 YQKAQMI------DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       182 y~~Al~~------~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +++++..      .|+... +..+|.+|..+|++++|+..+++++..
T Consensus       274 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         274 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9999864      344455 788999999999999999999999975

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.27  E-value=2.8e-11  Score=96.02  Aligned_cols=102  Identities=16%  Similarity=-0.027  Sum_probs=80.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442          106 IDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKA  185 (297)
Q Consensus       106 ~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~A  185 (297)
                      |..+...|+|++|+..|+++|++.|.........       .       .+..+.+++|+|.+|..+|++++|+..|+++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~-------~-------~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-------H-------AGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-------H-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc-------c-------chhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            7788899999999999999999976321000000       0       0113457999999999999999999999999


Q ss_pred             HHhCCC-------cH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          186 QMIDPD-------AN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       186 l~~~P~-------~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      +.+.|.       ..    . ++++|.+|..+|++++|+..|+++++.
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            987542       22    2 578999999999999999999999986

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=4.3e-10  Score=98.39  Aligned_cols=183  Identities=6%  Similarity=-0.026  Sum_probs=143.7

Q ss_pred             cccchhhhhhhhhc-CCCCCc-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHCCChHHHHHHHH
Q 022442           11 FSSKKEDLFHVIHK-VPAGDG-PYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIK   87 (297)
Q Consensus        11 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~Lg~~l~~~g~~~eAi~~~~   87 (297)
                      ...+..+.|....+ +++.+. -......+....|+++.|...|++++...|.+. .+|...+....+.|.+++|+++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34445566644433 333333 234445667789999999999999999998764 478899999999999999999999


Q ss_pred             HHHhhCCcchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHH
Q 022442           88 SFRGLCSKQSQESLDNVLIDL-YKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLA  166 (297)
Q Consensus        88 ~al~~~P~~~~~~l~~~L~~l-y~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg  166 (297)
                      +++..+|....  +....+.+ +...|+.+.|..+|+++++..|                          +++.++...+
T Consensus       159 ~al~~~~~~~~--~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--------------------------~~~~~w~~y~  210 (308)
T d2onda1         159 KAREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYG--------------------------DIPEYVLAYI  210 (308)
T ss_dssp             HHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--------------------------TCHHHHHHHH
T ss_pred             HHHHhCCCcHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--------------------------hhHHHHHHHH
Confidence            99999997543  33334444 3456899999999999998754                          4567889999


Q ss_pred             HHHHHCCChHHHHHHHHHHHHhCCCcH----H-HhHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022442          167 WAYMQKTNFMAAEVVYQKAQMIDPDAN----K-ACNLGLCLIKRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       167 ~~y~~~g~~~eA~~~y~~Al~~~P~~~----~-~~nLg~~l~~~g~~~eA~~~~~~al~~  221 (297)
                      ..+...|+++.|..+|++|+...|.++    . |......-...|+.+.+..+++++.+.
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999877554    3 556677777889999999999999886

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.22  E-value=6.5e-10  Score=94.56  Aligned_cols=185  Identities=17%  Similarity=0.096  Sum_probs=132.8

Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCcchHHHHHHH
Q 022442           29 DGPYVRAKHAQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRGLCSKQSQESLDNV  104 (297)
Q Consensus        29 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~----~g~~~eAi~~~~~al~~~P~~~~~~l~~~  104 (297)
                      +.+++.+|..+..+||+++|+.+|+++.+.  ++.+++++||.+|..    ..++..|+..++.+.......    ....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~----a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN----GCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccc----hhhc
Confidence            346788898999999999999999999876  467899999999988    678999999999988765432    2233


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHhhchhhhh-------cCc-----ch-------------------hHHhhh---
Q 022442          105 LIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAF-------NGK-----PT-------------------KTARSH---  146 (297)
Q Consensus       105 L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~-------~~~-----~~-------------------~~~~~~---  146 (297)
                      +|.++..    .++.+.|+..++++.+..+.....       .+.     ..                   .+....   
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~  155 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG  155 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence            5555544    578899999999998864322110       000     00                   000000   


Q ss_pred             ----------hhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCC
Q 022442          147 ----------GKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTR  207 (297)
Q Consensus       147 ----------~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~  207 (297)
                                ...+....++.++.++++||.+|..    ..++++|+.+|+++.+.  +++. .++||.+|..    ..+
T Consensus       156 ~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n  233 (265)
T d1ouva_         156 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRN  233 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCC
T ss_pred             CCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccC
Confidence                      0001134566788888999988887    67899999999999887  4566 7889998875    337


Q ss_pred             HHHHHHHHHHHHhc
Q 022442          208 YNEARSVLEDVLYG  221 (297)
Q Consensus       208 ~~eA~~~~~~al~~  221 (297)
                      +++|..+|+++...
T Consensus       234 ~~~A~~~~~kAa~~  247 (265)
T d1ouva_         234 EKQAIENFKKGCKL  247 (265)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC
Confidence            88899999998875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.20  E-value=8.4e-12  Score=108.09  Aligned_cols=132  Identities=13%  Similarity=-0.020  Sum_probs=102.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHH
Q 022442           39 QLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQ  118 (297)
Q Consensus        39 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eA  118 (297)
                      ++.+|++++|+..|+++++.+|+++.++..||.+|...|++++|++.|+.+++++|++.  .....++.++...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhccccHHH
Confidence            45789999999999999999999999999999999999999999999999999999843  3444466666655555444


Q ss_pred             HHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhH
Q 022442          119 IEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACN  197 (297)
Q Consensus       119 i~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~n  197 (297)
                      ...+.+...                         ...|+....+...+.++...|++++|+..++++++..|+.+. +..
T Consensus        84 ~~~~~~~~~-------------------------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          84 AQGAATAKV-------------------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             TTSCCCEEC-------------------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHHhhhhhc-------------------------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            332211111                         112334456777899999999999999999999999999876 543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=9.3e-10  Score=89.39  Aligned_cols=63  Identities=13%  Similarity=-0.081  Sum_probs=59.0

Q ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHh
Q 022442          158 TSRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIKRTRYNEARSVLEDVLY  220 (297)
Q Consensus       158 ~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~  220 (297)
                      ...++.++|.++..+|++++|+.++++++.++|.+.. |.+|+.+|..+|++++|+..|+++..
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3458899999999999999999999999999999999 99999999999999999999998754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.8e-10  Score=81.91  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcC
Q 022442           63 DSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ-----SQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNG  137 (297)
Q Consensus        63 ~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~-----~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~  137 (297)
                      ++-.+.+|.++.++|++++|+..|++++++.|..     ....+.+.||.+|.+.|++++|+..|+++|+++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--------   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--------   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--------
Confidence            4557899999999999999999999999886642     123456679999999999999999999999985        


Q ss_pred             cchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHC
Q 022442          138 KPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQK  172 (297)
Q Consensus       138 ~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~  172 (297)
                                        |+++.+++|++.+...+
T Consensus        77 ------------------P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 ------------------PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHH
T ss_pred             ------------------cCCHHHHHHHHHHHHHh
Confidence                              56788999998776554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.96  E-value=5.8e-10  Score=96.27  Aligned_cols=124  Identities=14%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             HHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHH
Q 022442           72 VMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQ  151 (297)
Q Consensus        72 ~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  151 (297)
                      -..+.|++++|++.++++++.+|+++  .....|+.+|...|++++|+..|++++++.|                     
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~--~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P---------------------   61 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFP---------------------   61 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG---------------------
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------------
Confidence            35678999999999999999999854  4666799999999999999999999999855                     


Q ss_pred             HhcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCcHH-HhHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022442          152 VSVRQETSRLLGNLAWAYMQKTNFMAAEVVYQKAQMI-DPDANK-ACNLGLCLIKRTRYNEARSVLEDVLYGRI  223 (297)
Q Consensus       152 ~~l~p~~~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~-~P~~~~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~  223 (297)
                           ++..++.+++.++...+..+++...+++.... +|+... ....+.++...|++++|...++++.+..+
T Consensus        62 -----~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          62 -----EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             -----GGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             -----CcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence                 45667888999998888888887776665544 344445 66789999999999999999999998743

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.4e-08  Score=80.77  Aligned_cols=95  Identities=15%  Similarity=0.003  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh----------------------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 022442           32 YVRAKHAQLVQKDPEAAIVLFWKAINAGDRV----------------------DSALKDMAVVMKQLDRSEEAIEAIKSF   89 (297)
Q Consensus        32 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~a~~~Lg~~l~~~g~~~eAi~~~~~a   89 (297)
                      ....+......|++++|+..|++|+.+.+..                      ..++.+++.++..+|++++|+..++++
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a   93 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL   93 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            4556777889999999999999999986542                      357889999999999999999999999


Q ss_pred             HhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 022442           90 RGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRL  128 (297)
Q Consensus        90 l~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~  128 (297)
                      +..+|.+  +..+..++.+|...|++++|+..|+++.+.
T Consensus        94 l~~~P~~--e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          94 TFEHPYR--EPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHSTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            9999984  467777899999999999999999998765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.52  E-value=7.6e-07  Score=67.77  Aligned_cols=112  Identities=15%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----cCCHHH
Q 022442           42 QKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVEE  117 (297)
Q Consensus        42 ~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~g~~~e  117 (297)
                      ++|+++|+.+|+++.+.+  ++.+.++||.  ....+.++|+..++++.+.+-.    .....||.+|..    ..++++
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~----~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcccch----hhhhhHHHhhhhccccchhhHH
Confidence            457888888888888765  3345566654  2345677777777776655422    223345666654    345677


Q ss_pred             HHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhC
Q 022442          118 QIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMID  189 (297)
Q Consensus       118 Ai~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~  189 (297)
                      |+..|+++.+..                            ++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        78 A~~~~~~aa~~g----------------------------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          78 AAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhccC----------------------------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777777766642                            34566677777765    456777777777776653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=5.1e-05  Score=63.23  Aligned_cols=154  Identities=12%  Similarity=0.036  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhchhhhhc-
Q 022442           62 VDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKK----CGKVEEQIEMLKRKLRLIYQGEAFN-  136 (297)
Q Consensus        62 ~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~----~g~~~eAi~~~~~al~~~p~~~~~~-  136 (297)
                      +|.++++||..+...|++++|++.|+++.+.+..    .....||.+|..    ..++..|...++++.....+....+ 
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence            4789999999999999999999999999887543    344458889887    7799999999999988754322211 


Q ss_pred             Ccc-------hhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH
Q 022442          137 GKP-------TKTARSHGKKFQVSVRQETSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK  204 (297)
Q Consensus       137 ~~~-------~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~  204 (297)
                      +..       ..........+...++.....+...||..+..    ......|...+.+...  +.+.. +.+||.++..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence            000       00000000112234445566777788877775    4456667777766544  45555 7888888886


Q ss_pred             ----cCCHHHHHHHHHHHHhc
Q 022442          205 ----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       205 ----~g~~~eA~~~~~~al~~  221 (297)
                          ..+...+..+++.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~  175 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDL  175 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCcccccccchhhhhccccc
Confidence                35677777777777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=1.5e-05  Score=60.25  Aligned_cols=108  Identities=16%  Similarity=0.062  Sum_probs=86.2

Q ss_pred             ChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCC
Q 022442           78 RSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQE  157 (297)
Q Consensus        78 ~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~  157 (297)
                      ++++|+..|+++.+.+-..+   . ..|+.  ....++++|+..|+++.+.                            +
T Consensus         8 d~~~A~~~~~kaa~~g~~~a---~-~~l~~--~~~~~~~~a~~~~~~aa~~----------------------------g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFG---C-LSLVS--NSQINKQKLFQYLSKACEL----------------------------N   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH---H-HHHHT--CTTSCHHHHHHHHHHHHHT----------------------------T
T ss_pred             CHHHHHHHHHHHHHCCChhh---h-hhhcc--ccccCHHHHHHHHhhhhcc----------------------------c
Confidence            67899999999988764322   2 22442  3457899999999998775                            3


Q ss_pred             cHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCCCcHH-HhHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 022442          158 TSRLLGNLAWAYMQ----KTNFMAAEVVYQKAQMIDPDANK-ACNLGLCLIK----RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       158 ~~~~l~nLg~~y~~----~g~~~eA~~~y~~Al~~~P~~~~-~~nLg~~l~~----~g~~~eA~~~~~~al~~  221 (297)
                      ++.+.++||.+|..    ..++++|+.+|+++.+.  .++. .++||.+|..    ..++++|..+|+++.+.
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            56788999999987    56899999999999876  5676 8899999987    46899999999999875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=1e-05  Score=60.61  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCCCcH-H-HhHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcchhhHH
Q 022442          159 SRLLGNLAWAYMQKT---NFMAAEVVYQKAQMIDPDAN-K-ACNLGLCLIKRTRYNEARSVLEDVLYGRIPGCEDGRTRK  233 (297)
Q Consensus       159 ~~~l~nLg~~y~~~g---~~~eA~~~y~~Al~~~P~~~-~-~~nLg~~l~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~  233 (297)
                      ..+.++.||++....   +.++|+.++++++..+|.+. + +++||..|.++|+|++|..+++++|+.   +|.+..   
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---eP~n~q---  108 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNKQ---  108 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHH---
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc---CCCcHH---
Confidence            468899999998764   55799999999999999876 6 899999999999999999999999998   565543   


Q ss_pred             HHHHHHHHHH
Q 022442          234 RAEELLLELE  243 (297)
Q Consensus       234 ~a~~~l~~~~  243 (297)
                       |.++...++
T Consensus       109 -A~~L~~~Ie  117 (124)
T d2pqrb1         109 -VGALKSMVE  117 (124)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=4.8e-05  Score=56.79  Aligned_cols=68  Identities=7%  Similarity=-0.056  Sum_probs=54.2

Q ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 022442          104 VLIDLYKKC---GKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYMQKTNFMAAEV  180 (297)
Q Consensus       104 ~L~~ly~~~---g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~~~g~~~eA~~  180 (297)
                      ..|..+.+.   .+.+++|.+++++++..|.                         +.-+.+++||.+|..+|+|++|..
T Consensus        40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-------------------------~~rd~lY~Lav~yyklgdy~~A~~   94 (124)
T d2pqrb1          40 NYAWGLIKSTDVNDERLGVKILTDIYKEAES-------------------------RRRECLYYLTIGCYKLGEYSMAKR   94 (124)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-------------------------GHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-------------------------hHHHHHHHHHHHHHHHhhHHHHHH
Confidence            356666654   4557899999998876541                         112589999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHh
Q 022442          181 VYQKAQMIDPDANKAC  196 (297)
Q Consensus       181 ~y~~Al~~~P~~~~~~  196 (297)
                      +++++|+++|+|....
T Consensus        95 ~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          95 YVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHCTTCHHHH
T ss_pred             HHHHHHccCCCcHHHH
Confidence            9999999999999743

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.15  E-value=4.3  Score=34.08  Aligned_cols=81  Identities=22%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHH
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEE  117 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~e  117 (297)
                      .++..+++..|....+++     +..+.|..+...+.+.....-|.. ........|+    .+. .+...|...|.+++
T Consensus        49 ~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~~~d----~l~-~~v~~ye~~~~~e~  117 (336)
T d1b89a_          49 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIVVHAD----ELE-ELINYYQDRGYFEE  117 (336)
T ss_dssp             HHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTTTCHH----HHH-HHHHHHHHTTCHHH
T ss_pred             HHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhhcCHH----HHH-HHHHHHHHcCChHH
Confidence            344455666666655543     345566677777766655544321 1111222332    122 24567788899999


Q ss_pred             HHHHHHHHHHhh
Q 022442          118 QIEMLKRKLRLI  129 (297)
Q Consensus       118 Ai~~~~~al~~~  129 (297)
                      .+..++.++...
T Consensus       118 Li~~Le~~~~~~  129 (336)
T d1b89a_         118 LITMLEAALGLE  129 (336)
T ss_dssp             HHHHHHHHTTST
T ss_pred             HHHHHHHHHcCC
Confidence            999888877653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=7.3  Score=33.46  Aligned_cols=167  Identities=10%  Similarity=0.016  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 022442           43 KDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQSQESLDNVLIDLYKKCGKVEEQIEML  122 (297)
Q Consensus        43 g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~~~~~l~~~L~~ly~~~g~~~eAi~~~  122 (297)
                      +..+.|..+.........+.......++.. ...+++..++..+..+-. .|.. ...+.+=+|..+...|+.++|...|
T Consensus       266 ~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~~~~~~~~~~~~~~l~~-~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         266 DVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPM-EAKE-KDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             TCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCT-TGGG-SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CchHHHHHHHHhhcccccchHHHHHHHHHH-HHcCChHHHHHHHHhcCc-cccc-HHHHHHHHHHHHHHcCChhhHHHHH
Confidence            334445555544444333333333334433 344677777766654321 2221 1234455788889999999999999


Q ss_pred             HHHHHhhchhhhhcCcchhHHhhhhhhHH-----HhcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCcHH
Q 022442          123 KRKLRLIYQGEAFNGKPTKTARSHGKKFQ-----VSVRQET---SRLLGNLAWAYMQKTNFMAAEVVYQKAQMIDPDANK  194 (297)
Q Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~-----~~l~p~~---~~~l~nLg~~y~~~g~~~eA~~~y~~Al~~~P~~~~  194 (297)
                      .++... + +  |.|-+.  ....+..+.     ....+..   ...-...+..+.+.|+..+|...++.++..- +...
T Consensus       343 ~~~a~~-~-~--fYG~LA--a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-~~~~  415 (450)
T d1qsaa1         343 HQLMQQ-R-G--FYPMVA--AQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-SKTE  415 (450)
T ss_dssp             HHHHTS-C-S--HHHHHH--HHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CHHH
T ss_pred             HHHhcC-C-C--hHHHHH--HHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-CHHH
Confidence            987653 2 1  211000  000000000     0000111   0122346788899999999999999887643 2223


Q ss_pred             HhHHHHHHHHcCCHHHHHHHHHHHH
Q 022442          195 ACNLGLCLIKRTRYNEARSVLEDVL  219 (297)
Q Consensus       195 ~~nLg~~l~~~g~~~eA~~~~~~al  219 (297)
                      ...++.+-.+.|.++.|+....++-
T Consensus       416 ~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         416 QAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCChhHHHHHHHHHH
Confidence            7788999999999999998877653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=8.1  Score=33.13  Aligned_cols=119  Identities=9%  Similarity=-0.067  Sum_probs=78.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCcc---------------------
Q 022442           38 AQLVQKDPEAAIVLFWKAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRGLCSKQ---------------------   96 (297)
Q Consensus        38 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~Lg~~l~~~g~~~eAi~~~~~al~~~P~~---------------------   96 (297)
                      ..+..+++..+..++..........+...+-+|..+..+|+.++|...|..+..- ++.                     
T Consensus       294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~  372 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAP  372 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCC
Confidence            4567789999988887543333334667789999999999999999999876431 210                     


Q ss_pred             ----h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhchhhhhcCcchhHHhhhhhhHHHhcCCCcHHHHHHHHHHHH
Q 022442           97 ----S--QESLDNVLIDLYKKCGKVEEQIEMLKRKLRLIYQGEAFNGKPTKTARSHGKKFQVSVRQETSRLLGNLAWAYM  170 (297)
Q Consensus        97 ----~--~~~l~~~L~~ly~~~g~~~eAi~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~l~nLg~~y~  170 (297)
                          .  ...-....+..+...|+..+|...+..++..                            -++.-+..+|.+..
T Consensus       373 ~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~----------------------------~~~~~~~~la~lA~  424 (450)
T d1qsaa1         373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS----------------------------KSKTEQAQLARYAF  424 (450)
T ss_dssp             SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------------------CCHHHHHHHHHHHH
T ss_pred             ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC----------------------------CCHHHHHHHHHHHH
Confidence                0  0001111234445556666665555544432                            13345667899999


Q ss_pred             HCCChHHHHHHHHHH
Q 022442          171 QKTNFMAAEVVYQKA  185 (297)
Q Consensus       171 ~~g~~~eA~~~y~~A  185 (297)
                      +.|.++.|+....++
T Consensus       425 ~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         425 NNQWWDLSVQATIAG  439 (450)
T ss_dssp             HTTCHHHHHHHHHHT
T ss_pred             HCCChhHHHHHHHHH
Confidence            999999999888776

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.30  E-value=0.82  Score=30.24  Aligned_cols=27  Identities=15%  Similarity=0.001  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHH
Q 022442          161 LLGNLAWAYMQKTNFMAAEVVYQKAQM  187 (297)
Q Consensus       161 ~l~nLg~~y~~~g~~~eA~~~y~~Al~  187 (297)
                      .+..-+.-+...|+|+|||+|+++|..
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455677888889999999999998875

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.28  E-value=9.5  Score=30.03  Aligned_cols=46  Identities=17%  Similarity=0.147  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHH-----hCCCcHH----HhHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 022442          176 MAAEVVYQKAQM-----IDPDANK----ACNLGLCLI-KRTRYNEARSVLEDVLYG  221 (297)
Q Consensus       176 ~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~-~~g~~~eA~~~~~~al~~  221 (297)
                      +.|..+|++|++     +.|.+|.    .+|.+.+|. -+|+.++|..+.++++..
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~  198 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE  198 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            479999999986     5788884    356666554 579999999999988864

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.84  E-value=10  Score=29.90  Aligned_cols=47  Identities=15%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHH-----hCCCcHH----HhHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 022442          175 FMAAEVVYQKAQM-----IDPDANK----ACNLGLCLIK-RTRYNEARSVLEDVLYG  221 (297)
Q Consensus       175 ~~eA~~~y~~Al~-----~~P~~~~----~~nLg~~l~~-~g~~~eA~~~~~~al~~  221 (297)
                      -+.|..+|++|++     +.|.+|.    .+|.+.+|.. +|+.++|..+.++++..
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~  203 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  203 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4678899999885     5788884    4677777765 59999999999988864