Citrus Sinensis ID: 022451
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7X6 | 339 | Thermospermine synthase A | yes | no | 0.885 | 0.775 | 0.674 | 1e-111 | |
| Q9YE02 | 314 | Probable spermidine synth | yes | no | 0.821 | 0.777 | 0.434 | 3e-54 | |
| Q5SK28 | 314 | Spermidine synthase OS=Th | yes | no | 0.760 | 0.719 | 0.471 | 7e-54 | |
| Q72K55 | 314 | Spermidine synthase OS=Th | yes | no | 0.760 | 0.719 | 0.471 | 7e-54 | |
| Q9HV34 | 349 | Spermidine synthase 2 OS= | yes | no | 0.764 | 0.650 | 0.415 | 2e-48 | |
| Q975S5 | 300 | Probable spermidine synth | yes | no | 0.727 | 0.72 | 0.450 | 2e-47 | |
| Q2JQS1 | 312 | Spermidine synthase OS=Sy | yes | no | 0.727 | 0.692 | 0.419 | 9e-47 | |
| Q2JQ57 | 312 | Spermidine synthase OS=Sy | yes | no | 0.801 | 0.762 | 0.390 | 2e-46 | |
| B0K172 | 277 | Spermidine synthase OS=Th | yes | no | 0.804 | 0.862 | 0.397 | 7e-44 | |
| B0K9I5 | 277 | Spermidine synthase OS=Th | yes | no | 0.804 | 0.862 | 0.397 | 7e-44 |
| >sp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 178/264 (67%), Positives = 221/264 (83%), Gaps = 1/264 (0%)
Query: 3 EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
E+ NG + + A + L ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct: 6 EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65
Query: 62 LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct: 66 LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125
Query: 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
+H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct: 126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185
Query: 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct: 186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245
Query: 242 FKYVVPYSAHIPSFADTWGWIMVS 265
FKYV Y+AH+PSFADTWGW+M S
Sbjct: 246 FKYVKAYTAHVPSFADTWGWVMAS 269
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Required for correct xylem specification through regulation of the lifetime of the xylem elements. Prevents premature death of the xylem vessel elements. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|Q9YE02|SPEE_AERPE Probable spermidine synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=speE PE=3 SV=2 | Back alignment and function description |
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Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 165/253 (65%), Gaps = 9/253 (3%)
Query: 15 GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVI 74
G K+V L K W+ E + + + ++ G +R+Q+IA++ GK LV+
Sbjct: 3 GGSEKSVFL----KWSWFLEWLTPDRATLKHIEDVIFQGRSRFQEIAVVRVSGEGKVLVL 58
Query: 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134
DGK QS+E DEF+YHE+LVHPA++ H +P+ + I+GGGEG+T RE+L+H++VEK VM DI
Sbjct: 59 DGKTQSSESDEFMYHEALVHPAMILHGSPRKVLILGGGEGATLREVLKHRSVEKAVMVDI 118
Query: 135 DEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKES-YDVIIGDLADPIEGGPC 192
DE VV + +L ++ AF DPR E+VI+DA + S+ E+ +DV+I DL DP+E GP
Sbjct: 119 DETVVNVAREHLREWHRGAFDDPRAEVVIDDAWNYVASKAETGFDVVIADLVDPLEAGPA 178
Query: 193 YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252
+LY++ +Y +VK +NP G+FVTQA I TE + I NT+ +VFK+V Y ++
Sbjct: 179 TRLYSEEYYR-MVKDVMNPGGVFVTQA--VSISHLTEYHAIIRNTVARVFKHVESYGVYV 235
Query: 253 PSFADTWGWIMVS 265
PSF WG+++ S
Sbjct: 236 PSFDSMWGFVVAS 248
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q5SK28|SPEE_THET8 Spermidine synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=speE PE=1 SV=1 | Back alignment and function description |
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Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 153/231 (66%), Gaps = 5/231 (2%)
Query: 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
+ ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE+LVHPA+L HP PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
+ I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ ++ AF DPR LVI+D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
ARA LE +E YDV+I DL DP+ E P LYT FY +VK LNP G+ QAG
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAGMI- 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS-IYNPHSHS 273
+ +H V ++ T+R+ F+YV Y HIP F +G+++ S ++P + S
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFS 249
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Has broad substrate specificity. Is also active with agmatine and norspermidine. Has lower activity with homospermidine, mitsubishine and thermine. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q72K55|SPEE_THET2 Spermidine synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 153/231 (66%), Gaps = 5/231 (2%)
Query: 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105
+ ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE+LVHPA+L HP PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVIND 164
+ I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ ++ AF DPR LVI+D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 165 ARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
ARA LE +E YDV+I DL DP+ E P LYT FY +VK LNP G+ QAG
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAHLNPGGVMGMQAGMI- 198
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS-IYNPHSHS 273
+ +H V ++ T+R+ F+YV Y HIP F +G+++ S ++P + S
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFS 249
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q9HV34|SPEE2_PSEAE Spermidine synthase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=speE2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 148/236 (62%), Gaps = 9/236 (3%)
Query: 41 RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHH 100
++ + L +L+ G TR+Q++ + DT + + L++DG +QSAE DE +YHE LV PA+L H
Sbjct: 43 QYVYRLRRVLYQGRTRWQNVLIADTYNYDRVLMLDGAIQSAESDESLYHELLVQPAMLAH 102
Query: 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLE 159
P+ + I+GGGEG+T RE+L H +V + VM D+D E+VE C+ +L ++ AF DPR E
Sbjct: 103 DEPRDVLIIGGGEGATLREVLSHASVRRAVMVDLDRELVELCREHLFQWHQGAFDDPRCE 162
Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
L+ D RA LE YDV+I D+ D ++ GP LYT+ FYE ++ RL P G+ Q
Sbjct: 163 LLAEDGRAYLERDPSLYDVVIIDVVDMLDNGPAQALYTRQFYE-LLHSRLRPGGVVAVQ- 220
Query: 220 GPAGI-FSHTE--VFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSH 272
G+ FSH++ + + TLR VF V Y A +PSF +WG+++ S + +H
Sbjct: 221 ---GLEFSHSDDKPHAALARTLRSVFSQVHSYRATVPSFLSSWGFLLASDWLDTNH 273
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q975S5|SPEE_SULTO Probable spermidine synthase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 140/222 (63%), Gaps = 6/222 (2%)
Query: 45 ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104
A+ ++ +T YQ L++ FGKAL++DGK+QS DEFIYHE+LVHP LL NP+
Sbjct: 20 AITKVIAEEKTPYQRALLVELARFGKALILDGKIQSTITDEFIYHEALVHPLLLSINNPE 79
Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVIN 163
I I+GGGEG+T RE+L+HKT++ V M DID V++F K YL ++ AF +P+ +LVI
Sbjct: 80 KILILGGGEGATLREVLKHKTIKNVTMVDIDPVVIDFAKKYLQEWHQGAFDNPKSKLVIE 139
Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
D ++ KE +D ++ DL DPI+ P LYTK FYE V R++ GI P+
Sbjct: 140 DGYKFIKETKEKFDAVVIDLTDPIKDSPSQMLYTKEFYEEV--KRISKWGIVTQATSPS- 196
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
FS E FS IYNT++ VFK V ++P+F WG++ S
Sbjct: 197 -FS-LETFSIIYNTIKHVFKKVSAGITYVPAFDGLWGFVYAS 236
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q2JQS1|SPEE_SYNJA Spermidine synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 147/229 (64%), Gaps = 13/229 (5%)
Query: 45 ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN-- 102
A+ IL +TR+Q++ + +T +GK L++DG QS DEF+YHE+LVHPAL+
Sbjct: 23 AITRILAYRKTRFQEMLIAETGAYGKGLMLDGHWQSTTADEFLYHEALVHPALVQVVQAG 82
Query: 103 --PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLE 159
P+ + I+GG EG+T RE+LR ++VE+VVM DID EVVE C+ +L +++ +F+DPR E
Sbjct: 83 GIPRRVLILGGAEGATLREVLRWRSVEQVVMVDIDGEVVEACREHLPEMHQGSFADPRAE 142
Query: 160 LVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
+VI DA L + +D I+ DL+DP+E GP Y+L+T+ F+ V+ +L G FV QA
Sbjct: 143 VVIADALDFLGQTEPIWDAILSDLSDPVEAGPAYRLFTQEFFR-QVRSKLQTAGAFVIQA 201
Query: 220 GPAG---IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
GP G ++ HT I +TL+ VF V PY+ + P++ G+ + +
Sbjct: 202 GPTGPVELWQHTR----IVHTLKTVFAAVQPYAIYAPTYGGPLGFALAA 246
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q2JQ57|SPEE_SYNJB Spermidine synthase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 153/251 (60%), Gaps = 13/251 (5%)
Query: 23 LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
++ R W +E + A+ IL +T +Q++ + +T FGK L++DG QS
Sbjct: 1 MSSPRSFFWVQEYFTPWDYTARAVTRILAYRKTPFQEMLIAETGAFGKGLMLDGHWQSTT 60
Query: 83 VDEFIYHESLVHPALLHHPN----PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138
VDEF+YHE+LVHPA++ P+ + ++GG EG+T RE+LR ++VE+VVM DID EV
Sbjct: 61 VDEFLYHEALVHPAMVQVVQAGGIPRRVLVLGGAEGATLREVLRWRSVEQVVMVDIDGEV 120
Query: 139 VEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197
V C+ +L +++ +F DPR+E+VI DA L+ +DVI+ DL+DPIE GP Y+L+T
Sbjct: 121 VAACREHLPEMHQGSFEDPRVEVVIADALDFLQETGPIWDVILSDLSDPIESGPAYRLFT 180
Query: 198 KSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPS 254
+ F+ ++ +L P+G F QAGP G + HT I TL+ VF V PY+ + P+
Sbjct: 181 QEFFR-QIRSKLQPDGAFTIQAGPTGPVELHQHTR----IVRTLKTVFAAVQPYAIYAPT 235
Query: 255 FADTWGWIMVS 265
+ G+ + +
Sbjct: 236 YGGPLGFALAA 246
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B0K172|SPEE_THEPX Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 146/254 (57%), Gaps = 15/254 (5%)
Query: 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
W+ E +ENLR+S + L +T YQ +A+LDT FG+ L +DG LQ+ E DEF+YH
Sbjct: 3 LWFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYH 62
Query: 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
E +VH L H NPK++ I+GGG+G + RE+L+H +VE+VV+ +IDE VV K YL
Sbjct: 63 EMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
+A DPR+E++I D + K +DV+I D DPI GP L+T FY+ V + L
Sbjct: 123 SQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CL 179
Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP----YSAHIPSFADT-WGWIMV 264
+GI V Q I+ + N L ++FK + P Y A IP++ + W + M
Sbjct: 180 KEDGIIVAQTESPFIYGK------LINKLSKMFKEIYPITKAYIATIPTYPGSLWTFTMG 233
Query: 265 S-IYNPHSHSILSL 277
S Y+P I S+
Sbjct: 234 SKKYDPEEVDINSI 247
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Thermoanaerobacter sp. (strain X514) (taxid: 399726) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B0K9I5|SPEE_THEP3 Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 146/254 (57%), Gaps = 15/254 (5%)
Query: 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYH 89
W+ E +ENLR+S + L +T YQ +A+LDT FG+ L +DG LQ+ E DEF+YH
Sbjct: 3 LWFTENQDENLRFSLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYH 62
Query: 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149
E +VH L H NPK++ I+GGG+G + RE+L+H +VE+VV+ +IDE VV K YL
Sbjct: 63 EMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAEIDEAVVRNSKKYLPTI 122
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
+A DPR+E++I D + K +DV+I D DPI GP L+T FY+ V + L
Sbjct: 123 SQALDDPRVEIMIGDGIKYVNEHKNEFDVVIVDSTDPI--GPAVGLFTSDFYKAVYE-CL 179
Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP----YSAHIPSFADT-WGWIMV 264
+GI V Q I+ + N L ++FK + P Y A IP++ + W + M
Sbjct: 180 KEDGIIVAQTESPFIYGK------LINKLSKMFKEIYPITKAYIATIPTYPGSLWTFTMG 233
Query: 265 S-IYNPHSHSILSL 277
S Y+P I S+
Sbjct: 234 SKKYDPEEVDINSI 247
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Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor. Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| 444436449 | 334 | SPDSY-like protein [Eucalyptus cladocaly | 0.892 | 0.793 | 0.860 | 1e-136 | |
| 225432624 | 329 | PREDICTED: thermospermine synthase ACAUL | 0.878 | 0.793 | 0.864 | 1e-134 | |
| 449433323 | 338 | PREDICTED: thermospermine synthase ACAUL | 0.892 | 0.784 | 0.841 | 1e-134 | |
| 255551457 | 336 | spermine synthase, putative [Ricinus com | 0.892 | 0.788 | 0.853 | 1e-133 | |
| 356536017 | 334 | PREDICTED: thermospermine synthase ACAUL | 0.892 | 0.793 | 0.831 | 1e-131 | |
| 359807232 | 334 | uncharacterized protein LOC100801533 [Gl | 0.892 | 0.793 | 0.823 | 1e-130 | |
| 255648363 | 334 | unknown [Glycine max] | 0.892 | 0.793 | 0.827 | 1e-130 | |
| 118484280 | 338 | unknown [Populus trichocarpa] | 0.892 | 0.784 | 0.857 | 1e-130 | |
| 224102051 | 338 | predicted protein [Populus trichocarpa] | 0.892 | 0.784 | 0.857 | 1e-129 | |
| 388492066 | 335 | unknown [Lotus japonicus] | 0.892 | 0.791 | 0.802 | 1e-128 |
| >gi|444436449|gb|AGE09592.1| SPDSY-like protein [Eucalyptus cladocalyx] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 228/265 (86%), Positives = 247/265 (93%)
Query: 1 MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
MG+IS SNGIS NG + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG +++QDI
Sbjct: 1 MGDISVSNGISNGNGVNGKSHSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASQFQDI 60
Query: 61 ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALL+HPNPKT+FIMGGGEGSTAREI
Sbjct: 61 ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLYHPNPKTLFIMGGGEGSTAREI 120
Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
LRHK VEKV MCDIDEEVV+FC+SYLVVN+EAF DPRLEL+INDARAELESRKE +DVII
Sbjct: 121 LRHKAVEKVSMCDIDEEVVDFCRSYLVVNREAFCDPRLELIINDARAELESRKECFDVII 180
Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
GDLADPIEGGPCYKLYTKSFYE+ VKPRL GIFVTQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLTHNGIFVTQAGPAGIFSHTEVFSCIYNTLKQ 240
Query: 241 VFKYVVPYSAHIPSFADTWGWIMVS 265
VFKYVVPYSAHIPS+ADTWGW+M S
Sbjct: 241 VFKYVVPYSAHIPSYADTWGWVMAS 265
|
Source: Eucalyptus cladocalyx Species: Eucalyptus cladocalyx Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432624|ref|XP_002281882.1| PREDICTED: thermospermine synthase ACAULIS5 [Vitis vinifera] gi|297737031|emb|CBI26232.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/265 (86%), Positives = 246/265 (92%), Gaps = 4/265 (1%)
Query: 1 MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
MG+ISCSNG N + K+ +L GYRKSCWYEEEIEENLRW FALNSILHTG T+YQDI
Sbjct: 1 MGDISCSNG----NEVNGKSHSLAGYRKSCWYEEEIEENLRWCFALNSILHTGATQYQDI 56
Query: 61 ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
ALLDTKPFGKALVIDGKLQSAE+DEFIYHESLVHPALLHHPNPK+IFIMGGGEGSTAREI
Sbjct: 57 ALLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALLHHPNPKSIFIMGGGEGSTAREI 116
Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
LRHKTVEKVVMCDIDEEVV+FCKSYLVVN+EAF DPRLELVINDARAELESR+E +DVII
Sbjct: 117 LRHKTVEKVVMCDIDEEVVDFCKSYLVVNREAFCDPRLELVINDARAELESREECFDVII 176
Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
GDLADPIEGGPCY+LYTKSFYE VKPRL+P GIFVTQAGPAG+FSHTEVFSCI+NTLRQ
Sbjct: 177 GDLADPIEGGPCYQLYTKSFYESTVKPRLSPGGIFVTQAGPAGVFSHTEVFSCIHNTLRQ 236
Query: 241 VFKYVVPYSAHIPSFADTWGWIMVS 265
VFK+VV YSAHIPSFAD WGW+M S
Sbjct: 237 VFKHVVAYSAHIPSFADIWGWVMAS 261
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433323|ref|XP_004134447.1| PREDICTED: thermospermine synthase ACAULIS5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/265 (84%), Positives = 243/265 (91%)
Query: 1 MGEISCSNGISQANGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDI 60
M ++S +N ++ N K +L GYRKSCWYEEEIEENLRWSFALNSILHTG ++YQDI
Sbjct: 1 MADVSSANLVNNGNELIEKGHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDI 60
Query: 61 ALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120
ALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLHHPNPK+IFIMGGGEGSTARE+
Sbjct: 61 ALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKSIFIMGGGEGSTAREL 120
Query: 121 LRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180
LRHKTVEKVVMCDIDEEVV+FCKSYL+VNKEAF DPRLEL+INDARAELE+R E YDVI+
Sbjct: 121 LRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARAELENRTELYDVIV 180
Query: 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240
GDLADPIEGGPCYKLYTKSFYE+ VKPRL +GIF+TQAGPAGIFSHTEVFSCIYNTL+Q
Sbjct: 181 GDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQ 240
Query: 241 VFKYVVPYSAHIPSFADTWGWIMVS 265
VFKYVVPYSAHIPSFADTWGW+M S
Sbjct: 241 VFKYVVPYSAHIPSFADTWGWVMAS 265
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551457|ref|XP_002516774.1| spermine synthase, putative [Ricinus communis] gi|223543862|gb|EEF45388.1| spermine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/267 (85%), Positives = 244/267 (91%), Gaps = 2/267 (0%)
Query: 1 MGEISCSNGISQA-NGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
MG+I+CSNGIS NG + K + + GYRKSCWYEEEIEENLRW FALNSILHTG ++YQ
Sbjct: 1 MGDIACSNGISNGTNGVNGKGHPSPNGYRKSCWYEEEIEENLRWCFALNSILHTGVSQYQ 60
Query: 59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
DIALLDTKPFGKALVIDGKLQSAEVDEFIYHE LVHPA+LHH N KTIFIMGGGEGSTAR
Sbjct: 61 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHECLVHPAILHHSNSKTIFIMGGGEGSTAR 120
Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
EILRH+TVEKVVMCDIDEEVV+FCK+YL VN+EAF DPRLE++INDAR ELESRKE YDV
Sbjct: 121 EILRHRTVEKVVMCDIDEEVVDFCKAYLAVNREAFCDPRLEIIINDARNELESRKECYDV 180
Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
IIGDLADPIEGGPCYKLYTKSFYE VKPRLN GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIEGGPCYKLYTKSFYELTVKPRLNQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240
Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMVS 265
RQVFKYVVPYSAHIPS+ADTWGW+M S
Sbjct: 241 RQVFKYVVPYSAHIPSYADTWGWVMAS 267
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536017|ref|XP_003536537.1| PREDICTED: thermospermine synthase ACAULIS5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/267 (83%), Positives = 241/267 (90%), Gaps = 2/267 (0%)
Query: 1 MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
MGEI+ NGIS N G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1 MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60
Query: 59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61 DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120
Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180
Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
IIGDLADPI+GGPCYKLYTKSFYE +VKPRL GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240
Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMVS 265
RQVFKYVVPYSAHIPS+AD WGW+M S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMAS 267
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807232|ref|NP_001241620.1| uncharacterized protein LOC100801533 [Glycine max] gi|255644595|gb|ACU22800.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/267 (82%), Positives = 240/267 (89%), Gaps = 2/267 (0%)
Query: 1 MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
MGEI+ NGIS N G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1 MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60
Query: 59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61 DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120
Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
E+LRHKT++KVVMCDIDEEVV FCKSY VVNKEAF D RLE+VINDAR ELE+R ESYDV
Sbjct: 121 ELLRHKTIDKVVMCDIDEEVVNFCKSYFVVNKEAFRDTRLEVVINDARVELEARDESYDV 180
Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
IIGDLADPI+GGPCYKLYTKSFYE +VKPRL GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGDLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240
Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMVS 265
RQVFKYVVPYSAHIPS+AD WGW+M S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMAS 267
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255648363|gb|ACU24632.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/267 (82%), Positives = 240/267 (89%), Gaps = 2/267 (0%)
Query: 1 MGEISCSNGISQAN--GADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQ 58
MGEI+ NGIS N G + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++YQ
Sbjct: 1 MGEIALPNGISNGNINGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQYQ 60
Query: 59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118
DIALLDTKPFGKALVIDGKLQSAE DEFIYHE LVHPALLH+P+PK +FIMGGGEGSTAR
Sbjct: 61 DIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHNPSPKNVFIMGGGEGSTAR 120
Query: 119 EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178
E+LRHKT+ KVVMCDIDEEVV FCKSYLVVNKEAF D RLE+VINDARAELE+R ESYDV
Sbjct: 121 ELLRHKTINKVVMCDIDEEVVNFCKSYLVVNKEAFRDQRLEVVINDARAELETRDESYDV 180
Query: 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238
IIG LADPI+GGPCYKLYTKSFYE +VKPRL GIFVTQAGPAGIFSHTEVFSCIYNTL
Sbjct: 181 IIGGLADPIDGGPCYKLYTKSFYELIVKPRLKQGGIFVTQAGPAGIFSHTEVFSCIYNTL 240
Query: 239 RQVFKYVVPYSAHIPSFADTWGWIMVS 265
RQVFKYVVPYSAHIPS+AD WGW+M S
Sbjct: 241 RQVFKYVVPYSAHIPSYADIWGWVMAS 267
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118484280|gb|ABK94019.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/266 (85%), Positives = 243/266 (91%), Gaps = 1/266 (0%)
Query: 1 MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
MGEISCSNGI NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1 MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60
Query: 60 IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61 IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120
Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
ILRHKT KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180
Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
IGDLADPIEGGPCYKLYTKSFYE VKP+LN GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240
Query: 240 QVFKYVVPYSAHIPSFADTWGWIMVS 265
QVFKYVVPYSAHIPSFADTWGW+M S
Sbjct: 241 QVFKYVVPYSAHIPSFADTWGWVMAS 266
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102051|ref|XP_002312526.1| predicted protein [Populus trichocarpa] gi|222852346|gb|EEE89893.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/266 (85%), Positives = 243/266 (91%), Gaps = 1/266 (0%)
Query: 1 MGEISCSNGISQANGADAK-NVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
MGEISCSNGI NG + K + +L GYRKSCWYEEEIEENLRW FALNSILHTG +RYQD
Sbjct: 1 MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQD 60
Query: 60 IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
IALLDTKPFGKAL+IDGKLQSAEVDEFIYHESLVHPALLHH +PKT+FIMGGGEGSTARE
Sbjct: 61 IALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLHHSSPKTVFIMGGGEGSTARE 120
Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
ILRHKT KVVMCDIDEEVV+FCK+YLVVN+EAF DPRLE++INDARAELE KE YDVI
Sbjct: 121 ILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVI 180
Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
IGDLADPIEGGPCYKLYTKSFYE VKP+LN GIFVTQAGPAGIFSHTEVFSCI NTL+
Sbjct: 181 IGDLADPIEGGPCYKLYTKSFYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLK 240
Query: 240 QVFKYVVPYSAHIPSFADTWGWIMVS 265
QVFKYVVPYSAHIPSFADTWGW+M S
Sbjct: 241 QVFKYVVPYSAHIPSFADTWGWVMAS 266
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492066|gb|AFK34099.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/268 (80%), Positives = 239/268 (89%), Gaps = 3/268 (1%)
Query: 1 MGEISCSNGISQA---NGADAKNVALTGYRKSCWYEEEIEENLRWSFALNSILHTGETRY 57
MGE++ S+GIS NG + ++ +L GYRKSCWYEEEIEE+LRW FALNSILHTG ++Y
Sbjct: 1 MGEVAFSSGISNGSVNNGVNGQSHSLNGYRKSCWYEEEIEEDLRWCFALNSILHTGASQY 60
Query: 58 QDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117
QDIALLDTKPFGKALVI GKLQSAE DEFIYHE LVHPALLHHPNPK +FIMGGGEGSTA
Sbjct: 61 QDIALLDTKPFGKALVIVGKLQSAETDEFIYHECLVHPALLHHPNPKNVFIMGGGEGSTA 120
Query: 118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177
RE+LRHKT++KV+MCDIDEE V FCKSYLVVNKEAF D RLE++INDAR ELE+R+E+YD
Sbjct: 121 RELLRHKTIDKVLMCDIDEEAVNFCKSYLVVNKEAFCDLRLEVIINDARGELEAREENYD 180
Query: 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237
VI+GDLADPI+GGPCYKLYTKSFYEF VKP+L GIFVTQAGPAGIFSH EVFSCIYNT
Sbjct: 181 VIVGDLADPIDGGPCYKLYTKSFYEFTVKPKLKQGGIFVTQAGPAGIFSHKEVFSCIYNT 240
Query: 238 LRQVFKYVVPYSAHIPSFADTWGWIMVS 265
LRQVFKYVVPYSAHIPS AD WGW+M S
Sbjct: 241 LRQVFKYVVPYSAHIPSHADIWGWVMAS 268
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| TAIR|locus:2180816 | 339 | ACL5 "ACAULIS 5" [Arabidopsis | 0.885 | 0.775 | 0.674 | 1.4e-101 | |
| TIGR_CMR|CHY_1240 | 273 | CHY_1240 "spermidine synthase" | 0.787 | 0.857 | 0.373 | 4e-42 | |
| UNIPROTKB|P09158 | 288 | speE "SpeE" [Escherichia coli | 0.814 | 0.840 | 0.373 | 9.9e-39 | |
| TIGR_CMR|BA_5619 | 275 | BA_5619 "spermidine synthase" | 0.754 | 0.814 | 0.330 | 1.1e-37 | |
| TIGR_CMR|CHY_1621 | 277 | CHY_1621 "spermidine synthase" | 0.787 | 0.844 | 0.338 | 1.3e-36 | |
| CGD|CAL0006284 | 297 | SPE3 [Candida albicans (taxid: | 0.797 | 0.797 | 0.342 | 1.5e-35 | |
| POMBASE|SPBC12C2.07c | 298 | SPBC12C2.07c "spermidine synth | 0.784 | 0.781 | 0.323 | 3.1e-35 | |
| DICTYBASE|DDB_G0268630 | 284 | spsA "Spermidine synthase" [Di | 0.777 | 0.813 | 0.330 | 6.5e-35 | |
| ASPGD|ASPL0000062169 | 292 | spdA [Emericella nidulans (tax | 0.747 | 0.760 | 0.337 | 2.2e-34 | |
| TAIR|locus:2016129 | 340 | SPDS2 "spermidine synthase 2" | 0.804 | 0.702 | 0.340 | 2.2e-34 |
| TAIR|locus:2180816 ACL5 "ACAULIS 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 178/264 (67%), Positives = 221/264 (83%)
Query: 3 EISCSNGISQANGADAKNVALTGYRKSC-WYEEEIEENLRWSFALNSILHTGETRYQDIA 61
E+ NG + + A + L ++ C WYEE I+++L+WSFALNS+LH G + YQDIA
Sbjct: 6 EVMFGNGFPEIHKATSPTQTLHSNQQDCHWYEETIDDDLKWSFALNSVLHQGTSEYQDIA 65
Query: 62 LLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREIL 121
LLDTK FGK LVIDGK+QSAE DEFIYHE L+HPALL HPNPKT+FIMGGGEGS AREIL
Sbjct: 66 LLDTKRFGKVLVIDGKMQSAERDEFIYHECLIHPALLFHPNPKTVFIMGGGEGSAAREIL 125
Query: 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181
+H T+EKVVMCDID+EVV+FC+ +L VN +AF + +LELVI DA+AELE R+E +D+I+G
Sbjct: 126 KHTTIEKVVMCDIDQEVVDFCRRFLTVNSDAFCNKKLELVIKDAKAELEKREEKFDIIVG 185
Query: 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241
DLADP+EGGPCY+LYTKSFY+ ++KP+L+P GIFVTQAGPAGIF+H EVF+ IYNT++QV
Sbjct: 186 DLADPVEGGPCYQLYTKSFYQNILKPKLSPNGIFVTQAGPAGIFTHKEVFTSIYNTMKQV 245
Query: 242 FKYVVPYSAHIPSFADTWGWIMVS 265
FKYV Y+AH+PSFADTWGW+M S
Sbjct: 246 FKYVKAYTAHVPSFADTWGWVMAS 269
|
|
| TIGR_CMR|CHY_1240 CHY_1240 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 90/241 (37%), Positives = 149/241 (61%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
WY E+ EN + + ++ IL+ +T YQ++A+++ FG++L++D +Q+ E DE++YHE
Sbjct: 2 WYIEKHNENYQVGWRVSDILYQKKTPYQNLAIVEFAEFGRSLILDDAVQTTEKDEYVYHE 61
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
LVHPA H +P+ I+GGG+G T RE+L+HKT+EKV + +IDEEV++ K +L
Sbjct: 62 MLVHPAAFTHKSPRRALIIGGGDGGTLREVLKHKTIEKVDLVEIDEEVIKASKQFLPSLS 121
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
E+F+DPR+E++I+D ++ K YD+I D +DP+ GP LY++ FY + L
Sbjct: 122 ESFNDPRVEVIIDDGIRYVKKVKNYYDLIFVDASDPV--GPAVVLYSEEFYRSLFDA-LT 178
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS-IYN 268
+GI Q+ + ++F I TLR +F V A +PS+ + + + + S +YN
Sbjct: 179 ADGIAAVQSESPNFYP--DIFVKIVTTLRDIFPKVNVALAPVPSYISGFFAFTVASKVYN 236
Query: 269 P 269
P
Sbjct: 237 P 237
|
|
| UNIPROTKB|P09158 speE "SpeE" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 94/252 (37%), Positives = 142/252 (56%)
Query: 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFI 87
K W+E + + FA++++L+ +T +QD+ + + FG+ + +DG +Q+ E DEFI
Sbjct: 4 KKQWHET-LHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFI 62
Query: 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
YHE + H LL H + K + I+GGG+G+ RE+ RHK VE + M +ID VV FC+ YL
Sbjct: 63 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 122
Query: 148 V-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206
N ++ DPR +LVI+D + +++DVII D DPI GP L+T +FYE K
Sbjct: 123 NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEGC-K 179
Query: 207 PRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSI 266
LNP GIFV Q G + + S + L F V Y A IP++ +G IM
Sbjct: 180 RCLNPGGIFVAQNGVCFLQQEEAIDS--HRKLSHYFSDVGFYQAAIPTY---YGGIMTFA 234
Query: 267 YNPHSHSILSLS 278
+ + ++ LS
Sbjct: 235 WATDNDALRHLS 246
|
|
| TIGR_CMR|BA_5619 BA_5619 "spermidine synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 76/230 (33%), Positives = 135/230 (58%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W+ E+ ++ + +N LHT +T +Q + +++T+ FG L++DG + + E DEF+YHE
Sbjct: 4 WFTEKQTKHFGITARINRTLHTEQTEFQKLDMVETEEFGNMLILDGMVMTTEKDEFVYHE 63
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
+ H L HPNP+ + ++GGG+G RE+L+H +V+K + +ID +V+E+ K YL
Sbjct: 64 MVAHVPLFTHPNPENVLVVGGGDGGVIREVLKHPSVKKATLVEIDGKVIEYSKQYLPSIA 123
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
A + R+E+ + D + + YDVI+ D +P+ GP L+TK FY + K L
Sbjct: 124 GALDNERVEVKVGDGFLHIAESENEYDVIMVDSTEPV--GPAVNLFTKGFYAGISKA-LK 180
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTW 259
+GIFV Q F+ E+ + ++ ++++F Y+A+IP++ + W
Sbjct: 181 EDGIFVAQTDNPW-FT-PELITTVFKDVKEIFPITRLYTANIPTYPSGLW 228
|
|
| TIGR_CMR|CHY_1621 CHY_1621 "spermidine synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 82/242 (33%), Positives = 140/242 (57%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W+ E+ N+ + + LHT T +Q++A+++T FG+ LV+DG +Q+ VDEF+YHE
Sbjct: 4 WFTEKQTPNVGITCKITRTLHTETTPFQELAVIETLQFGRMLVLDGMVQTTVVDEFVYHE 63
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
+ H AL HPNP+ + ++GGG+G T REI++H V+K V+ +IDE V+E K YL +
Sbjct: 64 MIAHVALNTHPNPEKVMVIGGGDGGTIREIVKHPKVKKAVLVEIDERVIEVSKQYLPEIA 123
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
+P++E+ + D ++ K YDVII D +P+ GP +L+++ FY+ V + L
Sbjct: 124 VALMGNPKVEVRVEDGIKHVKEHKGEYDVIIIDSTEPV--GPAVELFSEDFYKNVYES-L 180
Query: 210 NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVSI-Y 267
+GI V Q F + ++ + + + F Y A +P++ + W + + S Y
Sbjct: 181 KDDGIMVAQTESP--FFNRDIIKNSFTRIGKNFPITRLYFATVPTYPSGVWTFTLGSKKY 238
Query: 268 NP 269
+P
Sbjct: 239 DP 240
|
|
| CGD|CAL0006284 SPE3 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 86/251 (34%), Positives = 139/251 (55%)
Query: 28 KSCWYEEEIEENLRW-----SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAE 82
K W+ E I + + W S + +LH +++YQD+ + + +G LV+D +Q E
Sbjct: 11 KDGWFAE-ISDTM-WPGQAMSLKVEKVLHVEKSKYQDVLVFKSTTYGNVLVLDNCIQVTE 68
Query: 83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
DEF Y E + H AL HPNPK ++GGG+G REIL+H+++E+ +CDIDE V+E
Sbjct: 69 RDEFSYQEMITHLALNSHPNPKKALVIGGGDGGVLREILKHESIEEAWLCDIDETVIEVS 128
Query: 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202
K YL +++ DPR + I D LE K +DVII D +DP EG P L+ K +++
Sbjct: 129 KKYLPNMAKSYDDPRTRVHIGDGFKFLEEYKNQFDVIITDSSDP-EG-PAESLFQKPYFQ 186
Query: 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSFADTWGW 261
++K L +G+ TQA ++ H ++ S + ++F V Y+ IP++
Sbjct: 187 -LLKDALTEKGVITTQA--ENMWIHMDIISKLKKDCNEIFP-VAEYAYTMIPTYPSGSIG 242
Query: 262 IMVSIYNPHSH 272
MV +P+++
Sbjct: 243 FMVCSKDPNAN 253
|
|
| POMBASE|SPBC12C2.07c SPBC12C2.07c "spermidine synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 78/241 (32%), Positives = 138/241 (57%)
Query: 28 KSCWYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
K W+ E + + + +L+ G+++YQD+ + +++ +G LV+DG +Q+ E DE
Sbjct: 12 KDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDE 71
Query: 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
F Y E + H AL HPNPK + ++GGG+G RE+++H+ VE+ ++CDIDE+V++ K Y
Sbjct: 72 FSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQY 131
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
L F+ P++++ I D L+ + ++DVII D +DP GP L+ K +++ ++
Sbjct: 132 LPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDP--DGPAEALFQKPYFQ-LL 188
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMV 264
L G+ TQA I H V S + ++ VF V IP++ + + G+++
Sbjct: 189 SDALRGGGVITTQAECMWI--HLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVA 246
Query: 265 S 265
S
Sbjct: 247 S 247
|
|
| DICTYBASE|DDB_G0268630 spsA "Spermidine synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 79/239 (33%), Positives = 132/239 (55%)
Query: 31 WYEE--EIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E E +S + +LH ++ YQD + +K FG LV+DG +Q+ E DEF Y
Sbjct: 8 WFSEISEFWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAY 67
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
E + H L HP+PK + ++GGG+G RE+++H VE V +C+ID+ V+E +++L
Sbjct: 68 QEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCEIDKGVIEASRNFLPN 127
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
+ F P++ L I D + RK +DVII D +DPI GP L+ +++YE ++K
Sbjct: 128 MRVGFDHPKVTLFIGDGMEFMRQRKGEFDVIITDSSDPI--GPAQGLFERAYYE-LLKAA 184
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVSI 266
L P GI +Q ++ H + + ++++ V IPS+ + G+I+ S+
Sbjct: 185 LAPGGIVCSQC--ESMWLHLDTIKGLTTFCKELYPNVEYAYTSIPSYPGGSIGFILCSL 241
|
|
| ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 78/231 (33%), Positives = 129/231 (55%)
Query: 28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
K W+ E+ E + +N ILH +++YQD+ + ++ +G LV+D +Q E DE
Sbjct: 10 KDGWFSEQSEMWPGQAMNLRVNQILHHEKSKYQDVLVFESSDYGTVLVLDNVIQCTERDE 69
Query: 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
F Y E + H A+ HPNPK + ++GGG+G RE+++H+TVE+ ++CDIDE V+ K Y
Sbjct: 70 FSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHETVEEAILCDIDEAVIRVSKKY 129
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
L F P +++ + D L+ R+ +DVII D +DP EG P L+ K ++E ++
Sbjct: 130 LPGMSIGFQHPNVKVHVGDGFEFLKQRQNEFDVIITDSSDP-EG-PAESLFQKPYFE-LL 186
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF 255
+ L G+ TQA + H + + + +VF V Y+ IP++
Sbjct: 187 RDALRDGGVITTQAENQWL--HLPLIADLKKACNEVFP-VAEYAYTTIPTY 234
|
|
| TAIR|locus:2016129 SPDS2 "spermidine synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 84/247 (34%), Positives = 136/247 (55%)
Query: 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
S + IL G++ YQD+ + + +GK LV+DG +Q E DE Y E + H L N
Sbjct: 65 SLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISN 124
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
PK + ++GGG+G RE+ RH +VE++ +C+ID+ VV+ K Y + DPR+ L+I
Sbjct: 125 PKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPRVNLII 184
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
D A L++ E +YD +I D +DPI GP +L+ K F+E V + L P G+ TQA
Sbjct: 185 GDGVAFLKNAAEGTYDAVIVDSSDPI--GPAKELFEKPFFESVNRA-LRPGGVVCTQA-- 239
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMVSIYNPHSHSILSLSY 279
++ H ++ I + R +FK V Y+ +P++ + G+++ S P +S
Sbjct: 240 ESLWLHMDIIEDIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFMLCSSEGPQVDFKKPVSL 299
Query: 280 FENLDSS 286
+ +SS
Sbjct: 300 IDTDESS 306
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1JK45 | SPEE_YERPY | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| Q1CLX1 | SPEE_YERPN | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| B1LGS2 | SPEE_ECOSM | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q9S7X6 | ACL5_ARATH | 2, ., 5, ., 1, ., 7, 9 | 0.6742 | 0.8855 | 0.7758 | yes | no |
| B0K172 | SPEE_THEPX | 2, ., 5, ., 1, ., 1, 6 | 0.3976 | 0.8047 | 0.8628 | yes | no |
| B7MNY3 | SPEE_ECO81 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| A7FM33 | SPEE_YERP3 | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| B0K9I5 | SPEE_THEP3 | 2, ., 5, ., 1, ., 1, 6 | 0.3976 | 0.8047 | 0.8628 | yes | no |
| Q8RA94 | SPEE1_THETN | 2, ., 5, ., 1, ., 1, 6 | 0.3858 | 0.8047 | 0.8628 | yes | no |
| B7LVY5 | SPEE_ESCF3 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| A9R1H4 | SPEE_YERPG | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| B7MBA4 | SPEE_ECO45 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| A1A7G7 | SPEE_ECOK1 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q66EH3 | SPEE_YERPS | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| B5Y1R1 | SPEE_KLEP3 | 2, ., 5, ., 1, ., 1, 6 | 0.3669 | 0.8047 | 0.8356 | yes | no |
| A6T4R6 | SPEE_KLEP7 | 2, ., 5, ., 1, ., 1, 6 | 0.375 | 0.8047 | 0.8356 | yes | no |
| B7UIG9 | SPEE_ECO27 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q3Z5N9 | SPEE_SHISS | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q8ZBJ8 | SPEE_YERPE | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| Q1C3U7 | SPEE_YERPA | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| Q83MF0 | SPEE_SHIFL | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q326B5 | SPEE_SHIBS | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| B6HZ96 | SPEE_ECOSE | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| A7ZW70 | SPEE_ECOHS | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| B1XC96 | SPEE_ECODH | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| Q1RG70 | SPEE_ECOUT | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| B1IQL9 | SPEE_ECOLC | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| A4TPU4 | SPEE_YERPP | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| Q0T879 | SPEE_SHIF8 | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| C4ZRL4 | SPEE_ECOBW | 2, ., 5, ., 1, ., 1, 6 | 0.3730 | 0.8148 | 0.8402 | yes | no |
| B2K4I2 | SPEE_YERPB | 2, ., 5, ., 1, ., 1, 6 | 0.3706 | 0.8316 | 0.8344 | yes | no |
| A1JJM8 | SPEE_YERE8 | 2, ., 5, ., 1, ., 1, 6 | 0.3769 | 0.8148 | 0.8432 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.5.1.79 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.5.1.16 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.5.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 297 | |||
| PLN02823 | 336 | PLN02823, PLN02823, spermine synthase | 0.0 | |
| PRK00811 | 283 | PRK00811, PRK00811, spermidine synthase; Provision | 2e-87 | |
| pfam01564 | 240 | pfam01564, Spermine_synth, Spermine/spermidine syn | 9e-75 | |
| COG0421 | 282 | COG0421, SpeE, Spermidine synthase [Amino acid tra | 5e-74 | |
| TIGR00417 | 271 | TIGR00417, speE, spermidine synthase | 1e-69 | |
| PRK03612 | 521 | PRK03612, PRK03612, spermidine synthase; Provision | 2e-64 | |
| COG4262 | 508 | COG4262, COG4262, Predicted spermidine synthase wi | 7e-50 | |
| PLN02366 | 308 | PLN02366, PLN02366, spermidine synthase | 8e-48 | |
| PRK01581 | 374 | PRK01581, speE, spermidine synthase; Validated | 2e-33 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-08 | |
| PRK04457 | 262 | PRK04457, PRK04457, spermidine synthase; Provision | 1e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 8e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-05 | |
| PRK00536 | 262 | PRK00536, speE, spermidine synthase; Provisional | 6e-05 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 0.001 |
| >gnl|CDD|178418 PLN02823, PLN02823, spermine synthase | Back alignment and domain information |
|---|
Score = 528 bits (1361), Expect = 0.0
Identities = 199/266 (74%), Positives = 228/266 (85%), Gaps = 1/266 (0%)
Query: 1 MGEISCSNGISQANGADAKNVA-LTGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQD 59
EI NG S A + Y KS WYEEEIE++LRWS+A+NS+LHTG + +QD
Sbjct: 1 AVEIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQD 60
Query: 60 IALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTARE 119
IAL+DTKPFGK L+IDGK+QSAE DEF+YHESLVHPALLHHPNPKT+FIMGGGEGSTARE
Sbjct: 61 IALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTARE 120
Query: 120 ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179
+LRHKTVEKVVMCDID+EVV+FC+ +L VN+EAF D RLEL+INDARAELE R E +DVI
Sbjct: 121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180
Query: 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239
IGDLADP+EGGPCY+LYTKSFYE +VKP+LNP GIFVTQAGPAGI +H EVFS IYNTLR
Sbjct: 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR 240
Query: 240 QVFKYVVPYSAHIPSFADTWGWIMVS 265
QVFKYVVPY+AH+PSFADTWGW+M S
Sbjct: 241 QVFKYVVPYTAHVPSFADTWGWVMAS 266
|
Length = 336 |
| >gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 2e-87
Identities = 96/242 (39%), Positives = 143/242 (59%), Gaps = 9/242 (3%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W+ E + +N SF + +L+ ++ +Q I + +T FG+ L +DG + + E DEFIYHE
Sbjct: 5 WFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHE 64
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVN 149
+ H L HPNPK + I+GGG+G T RE+L+H +VEK+ + +IDE VVE C+ YL +
Sbjct: 65 MMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA 124
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209
A+ DPR+ELVI D + + S+DVII D DP+ GP L+TK FYE + L
Sbjct: 125 GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV--GPAEGLFTKEFYENCKR-AL 181
Query: 210 NPEGIFVTQAG-PAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVSIY 267
+GIFV Q+G P F + ++ L++VF V PY A IP++ + W + S
Sbjct: 182 KEDGIFVAQSGSP---FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238
Query: 268 NP 269
+
Sbjct: 239 DD 240
|
Length = 283 |
| >gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 9e-75
Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 31 WYEEEIEEN--LRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E ++ L + + +L+ ++ YQDI + ++K FGK LV+DG++Q E DEFIY
Sbjct: 2 WFTEILDLWPGLAVEYKVEKVLYEEKSEYQDIEIFESKTFGKILVLDGRVQLTERDEFIY 61
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
HE + H L HPNPK + I+GGG+G RE+++H +VEK+ + +IDE+V+EF K +L
Sbjct: 62 HEMIAHVPLCSHPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPS 121
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
F DPR+++VI D L+ +DVII D DP+ GP L++K FY+ + +
Sbjct: 122 LAGGFDDPRVKVVIGDGFKFLKDYLVEFDVIIVDSTDPV--GPAENLFSKEFYDLLKR-A 178
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
L +G+FVTQA + H E+ I ++VF V+PY +P++ GW
Sbjct: 179 LKEDGVFVTQAE--SPWLHLELIINILKNGKKVFPVVMPYVVPVPTYPS-GGWGFAV 232
|
Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240 |
| >gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 5e-74
Identities = 100/241 (41%), Positives = 142/241 (58%), Gaps = 6/241 (2%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W+ E + LR F + +L+ ++ YQDI + +++ FGK LV+DG +Q E DEFIYHE
Sbjct: 5 WFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHE 64
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
L H LL HPNPK + I+GGG+G T RE+L+H VE++ M +ID V+E + YL
Sbjct: 65 MLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS 124
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
DPR+E++I+D L +E +DVII D DP+ GP L+T+ FYE + L
Sbjct: 125 GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV--GPAEALFTEEFYE-GCRRALK 181
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVSIYNP 269
+GIFV QAG F E + Y + +VF V PY A IP++ + WG+I+ S
Sbjct: 182 EDGIFVAQAG--SPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKA 239
Query: 270 H 270
H
Sbjct: 240 H 240
|
Length = 282 |
| >gnl|CDD|188048 TIGR00417, speE, spermidine synthase | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-69
Identities = 89/236 (37%), Positives = 144/236 (61%), Gaps = 6/236 (2%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W+ E ++N + ++ +L+ ++ +QD+ + +T+ FG LV+DG +Q+ E DEFIYHE
Sbjct: 1 WFTEYHDKNFGLTMKVDKVLYHEKSEFQDLEIFETEAFGNVLVLDGVVQTTERDEFIYHE 60
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
+ H L HPNPK + ++GGG+G RE+L+HK+VE + DIDE+V+E + YL
Sbjct: 61 MITHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVESATLVDIDEKVIELSRKYLPNLA 120
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
++ DPR++LVI+D L + ++DVII D DP+ GP L+TK FYE ++K LN
Sbjct: 121 GSYDDPRVKLVIDDGFKFLADTENTFDVIIVDSTDPV--GPAETLFTKEFYE-LLKKALN 177
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS 265
P+GIFV Q+ + E+ + L++ F Y+A IP++ + W + + S
Sbjct: 178 PDGIFVAQSE--SPWLQLELIIDLKRKLKEAFPITEYYTAAIPTYPSGLWTFTIAS 231
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271 |
| >gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 2e-64
Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 15/241 (6%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIAL---LDTKPFGKALVIDGKLQSAEVDEFI 87
+ IE + +++ +T YQ I + + + L ++G+LQ + DE+
Sbjct: 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYR 282
Query: 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147
YHE+LVHPA+ P+ + ++GGG+G RE+L++ VE+V + D+D + E ++
Sbjct: 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342
Query: 148 V---NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP--IEGGPCYKLYTKSFYE 202
+ N A DPR+ +V +DA L E +DVII DL DP G KLY+ FY
Sbjct: 343 LRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALG---KLYSVEFYR 399
Query: 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWI 262
++K RL P+G+ V Q+ + + F I TL PY ++PSF + WG++
Sbjct: 400 -LLKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGLATTPYHVNVPSFGE-WGFV 455
Query: 263 M 263
+
Sbjct: 456 L 456
|
Length = 521 |
| >gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 7e-50
Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 13/222 (5%)
Query: 49 ILHTGETRYQDIALLDTKPFGK--ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
I+H ++ YQ I + G L +DG LQ + DE+ YHESLV+PAL +++
Sbjct: 237 IIHAIQSPYQRIVVTR---RGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSV 293
Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFSDPRLELVIN 163
++GGG+G RE+L++ VE++ + D+D ++E V +N+ +FSDPR+ +V +
Sbjct: 294 LVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND 353
Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG 223
DA L + + +DV+I DL DP +LY+ FY ++ L G+ V QAG
Sbjct: 354 DAFQWLRTAADMFDVVIVDLPDP-STPSIGRLYSVEFYR-LLSRHLAETGLMVVQAGSP- 410
Query: 224 IFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
+ VF I T++ V PY H+P+F + WG+I+ +
Sbjct: 411 -YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAA 450
|
Length = 508 |
| >gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 8e-48
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 7/215 (3%)
Query: 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102
S + +L G++ +QD+ + ++ +GK LV+DG +Q E DE Y E + H L PN
Sbjct: 32 SLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
PK + ++GGG+G REI RH +VE++ +C+ID+ V++ K + F DPR+ L I
Sbjct: 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI 151
Query: 163 NDARAELESRKE-SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221
D L++ E +YD II D +DP+ GP +L+ K F+E V + L P G+ TQA
Sbjct: 152 GDGVEFLKNAPEGTYDAIIVDSSDPV--GPAQELFEKPFFESVARA-LRPGGVVCTQA-- 206
Query: 222 AGIFSHTEVFSCIYNTLRQVFKYVVPY-SAHIPSF 255
++ H ++ + R+ FK V Y +P++
Sbjct: 207 ESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTY 241
|
Length = 308 |
| >gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 47 NSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106
++ L ++ YQ+I LL L +D +LQ + VDE IYHE+LVHP + +PK +
Sbjct: 97 HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRV 154
Query: 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVIN 163
I+GGG+G RE+L+++TV V + D+D ++ ++ + +NK AF D R+ + +
Sbjct: 155 LILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC 214
Query: 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPA 222
DA+ L S YDVII D DP LYT + + L +G FV Q+ PA
Sbjct: 215 DAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFARIAT-FLTEDGAFVCQSNSPA 272
Query: 223 GIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGW 261
V+ I NT+ V Y +PSF WG+
Sbjct: 273 ---DAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGF 308
|
Length = 374 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-08
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169
G G G+ A + +V DI +E + A +E++ DA
Sbjct: 6 GCGTGALALALASGP-GARVTGVDISPVALELARK----AAAALLADNVEVLKGDAEELP 60
Query: 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
ES+DVII D F E + L P G+ V
Sbjct: 61 PEADESFDVIISDPP-----LHHLVEDLARFLE-EARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP 156
LL +P P+ I +G G GS A+ I + + +I+ +V+ +++ + +
Sbjct: 61 LLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL---PENGE 117
Query: 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
R E++ D + + S DVI+ D D G L T+ F++ + L+ +GIFV
Sbjct: 118 RFEVIEADGAEYIAVHRHSTDVILVDGFD--GEGIIDALCTQPFFD-DCRNALSSDGIFV 174
Query: 217 T 217
Sbjct: 175 V 175
|
Length = 262 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-07
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
+ G G G+ R +VV ++D E + L A PR+ +V+
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRL---ALAGLAPRVRVVV 57
Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFY-EFVVK--PRLNPEGIFV 216
DAR LE S+D+++G+ P + Y F+ L P G+ V
Sbjct: 58 GDARELLELPDGSFDLVLGNP--PYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162
+ +G G GS A E+ R +V D+ E++E + N + PR+ V
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE----NAKLALGPRITFVQ 57
Query: 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219
DA L+ E +D + GG +L + L P G V A
Sbjct: 58 GDAPDALDL-LEGFDAVFIGGG----GGDLLELLDA------LASLLKPGGRLVLNA 103
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-05
Identities = 43/238 (18%), Positives = 90/238 (37%), Gaps = 28/238 (11%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W +EI LR + + + L + + + + +K FG+ +++ +L F++ E
Sbjct: 2 WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNKQLL---FKNFLHIE 58
Query: 91 S--LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
S L H K + I+ G + A ++ ++ T V DE++++ S+
Sbjct: 59 SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPH 116
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGD-LADPIEGGPCYKLYTKSFYEFVVKP 207
E ++ A+ L+ + YD+II D + +K
Sbjct: 117 FHEVKNNKNFTH----AKQLLDLDIKKYDLIICLQEPDIHKIDG-------------LKR 159
Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
L +G+F++ A + F +P+ A + ++ G+I S
Sbjct: 160 MLKEDGVFISVA--KHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNK-GYIYAS 214
|
Length = 262 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 29/151 (19%)
Query: 81 AEVDEFIYHESL--VHPA-------LLHHPNPKTIFIMGGGEG-STAR--EILRHKTVEK 128
AE++EF + + P L PK I +G G S L +
Sbjct: 29 AELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDG--R 86
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDVIIGDLADP 186
+ + DEE E + L EA D R+EL++ ++ SR S+D++ D AD
Sbjct: 87 LTTIERDEERAEIARENL---AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID-AD- 141
Query: 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217
K + E + P L P G+ V
Sbjct: 142 -------KADYPEYLERAL-PLLRPGGLIVA 164
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| PLN02823 | 336 | spermine synthase | 100.0 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 100.0 | |
| PLN02366 | 308 | spermidine synthase | 100.0 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 100.0 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 100.0 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 100.0 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 100.0 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 100.0 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 100.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 100.0 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 100.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.96 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.71 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.63 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.52 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.52 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.48 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.47 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.45 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.45 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.42 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.41 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.41 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.41 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.41 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.4 | |
| PLN02476 | 278 | O-methyltransferase | 99.4 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.4 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.4 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.39 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.39 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.37 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.37 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.37 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.36 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.36 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.35 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.35 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.34 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.34 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.34 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.34 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.33 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.33 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.33 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.33 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.32 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.31 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.31 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.31 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.31 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.3 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.29 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.28 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.27 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.27 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.25 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.25 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.25 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.25 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.25 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.25 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.23 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.23 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.22 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.22 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.21 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.21 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.21 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.21 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.21 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.21 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.2 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.19 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.18 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.18 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.18 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.17 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.17 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.17 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.16 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.16 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.15 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.12 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.12 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.11 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.11 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.1 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.09 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.09 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.08 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.07 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.07 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.07 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.06 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.06 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.06 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.06 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.05 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.05 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.05 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.04 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.04 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.04 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.02 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.02 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.01 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.0 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.0 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.0 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.99 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.98 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.97 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.97 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.96 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.96 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.96 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.95 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.94 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.94 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.94 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.94 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.93 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.92 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.91 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.91 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.9 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.9 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.87 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.87 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.87 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.85 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.84 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.83 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.83 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.83 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.83 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.8 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.8 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.79 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.77 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.76 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.75 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.71 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.7 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.68 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.67 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.64 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.64 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.63 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.63 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.63 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.6 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.59 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.56 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.56 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.55 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.53 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.52 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.51 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.51 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.48 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.44 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.42 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.41 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.4 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.39 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.38 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.38 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.38 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.38 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.36 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.33 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 98.33 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.31 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.31 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.29 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.26 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.24 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.24 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.19 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.18 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.17 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.17 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.11 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.1 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.09 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.09 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.06 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.06 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.04 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.01 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.0 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.99 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.93 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.92 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.91 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.9 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.88 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.84 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.81 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.79 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.77 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.77 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.74 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.7 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.68 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.67 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.66 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.66 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.65 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.54 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.48 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.48 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.42 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.36 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.33 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.27 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.25 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.1 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.1 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.04 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.02 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.0 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.94 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.86 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.81 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.8 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.79 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.77 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.74 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.74 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.73 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.69 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.66 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.64 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.61 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.61 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.54 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.52 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.43 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.42 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.37 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.36 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.27 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.25 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.24 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.18 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.15 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.09 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 96.08 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.95 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.8 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.66 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.64 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.55 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.51 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.42 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.38 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.35 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.34 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.22 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.19 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.13 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.54 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.5 | |
| PF14314 | 675 | Methyltrans_Mon: Virus-capping methyltransferase | 94.5 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 94.47 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.3 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.26 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.21 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.01 | |
| PHA01634 | 156 | hypothetical protein | 93.69 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.68 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 93.48 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.31 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 93.23 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 93.14 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.14 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.09 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.07 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.05 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 92.9 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 92.87 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.73 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.61 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.57 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.55 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.42 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 92.41 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 92.25 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.98 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 91.92 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.87 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 91.8 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 91.72 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 91.7 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.6 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 91.56 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 91.52 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.52 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 91.47 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 91.47 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.4 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.35 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 91.31 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 91.27 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.24 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 91.21 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 91.21 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 90.83 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.81 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.81 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 90.71 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 90.66 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 90.42 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 90.4 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.35 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.3 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.21 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.17 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 90.08 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 90.08 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 90.07 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.97 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 89.92 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 89.6 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.51 | |
| PLN02494 | 477 | adenosylhomocysteinase | 89.48 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.4 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 89.31 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 89.18 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 89.17 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 88.94 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.77 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.66 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 88.6 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 88.46 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.45 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 88.4 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 88.4 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 88.4 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.39 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 88.18 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 88.12 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 88.08 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 88.03 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 87.84 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.6 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.55 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 87.53 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 87.53 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 87.5 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 87.26 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.11 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 87.1 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.02 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 86.68 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 86.65 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 86.61 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.53 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 86.43 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 86.39 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 86.38 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.34 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 86.3 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 85.99 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 85.94 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.94 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 85.91 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 85.89 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 85.85 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.83 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.81 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 85.8 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 85.76 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 85.59 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 85.57 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 85.36 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 85.25 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 85.22 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 85.16 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 84.95 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 84.87 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 84.81 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 84.41 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 84.37 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 84.33 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 84.07 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.06 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 84.02 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 83.74 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 83.72 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 83.68 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 83.62 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 83.56 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 83.52 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 83.5 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 83.41 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 83.31 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 83.26 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 83.2 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 83.04 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 82.59 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.58 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 82.52 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 82.49 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 82.49 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 82.39 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 82.34 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 82.31 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 82.2 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 82.09 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 81.96 | |
| PLN02256 | 304 | arogenate dehydrogenase | 81.95 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 81.81 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 81.75 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 81.73 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 81.71 | |
| PF06690 | 252 | DUF1188: Protein of unknown function (DUF1188); In | 81.3 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 81.29 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 81.28 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 81.22 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 81.15 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 81.09 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 81.04 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 80.57 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 80.56 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 80.34 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 80.08 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 80.06 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 80.05 |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-50 Score=371.40 Aligned_cols=266 Identities=75% Similarity=1.265 Sum_probs=233.6
Q ss_pred ceeeecCCcccccccccccccC-CccccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccc
Q 022451 3 EISCSNGISQANGADAKNVALT-GYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~ 81 (297)
||--.||.|........+-++. .+-.+.|++|...++.+..+.+.++|++++|+||+|.|+++..+|++|++||..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~ 82 (336)
T PLN02823 3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA 82 (336)
T ss_pred ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence 5666777776543333333322 123557999988888999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 022451 82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (297)
Q Consensus 82 ~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~ 161 (297)
+.+++.|||+|+|++++.+++|++||+||+|+|+++++++++.+..+|++|||||+++++||+||+.....+.+||++++
T Consensus 83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~ 162 (336)
T PLN02823 83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI 162 (336)
T ss_pred cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence 99999999999999999999999999999999999999999877889999999999999999999876555789999999
Q ss_pred EcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHH-HHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 162 ~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~-~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
.+||+.||+..+++||+|++|+++|...+|+..|++.+||+ . ++++|+|||++++|..++..+...+.++.+.+++++
T Consensus 163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99999999877789999999999887556667899999998 8 799999999999998765434456788999999999
Q ss_pred hCCceeEEEEecCccCCceeEEEEecCCC
Q 022451 241 VFKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 241 ~F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
+|+.+.+|.+.+|+|++.|+|++||+.+.
T Consensus 242 vF~~v~~y~~~vPsf~~~w~f~~aS~~~~ 270 (336)
T PLN02823 242 VFKYVVPYTAHVPSFADTWGWVMASDHPF 270 (336)
T ss_pred hCCCEEEEEeecCCCCCceEEEEEeCCcc
Confidence 99999999999999988899999999764
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=347.45 Aligned_cols=236 Identities=45% Similarity=0.833 Sum_probs=215.3
Q ss_pred ceEEeeec---cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeE
Q 022451 30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (297)
Q Consensus 30 ~w~~~~~~---~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~V 106 (297)
+|++|..+ ++.+..|++.+++++++|+||+|.|++++.+|++|++||.+|+++++++.|||+|+|+|++.+++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD 185 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~~~ 185 (297)
|+||+|+|+++++++++++..+|++|||||.|+++|++||+.....++|||++++.+||+.||+...+ +||+|++|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999878999999999999999999998654446799999999999999998877 99999999999
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCc-eeEEEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT-WGWIMV 264 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~-~~~~~a 264 (297)
|. ++...|++.+||+. ++++|+|||++++|..+| ......++.+.++++++|+.+.+|...+|+|++. |.|++|
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~ 235 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASA 235 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEE
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEE
Confidence 77 45456999999999 899999999999998766 5677889999999999999999999999999865 789999
Q ss_pred ecCCCC
Q 022451 265 SIYNPH 270 (297)
Q Consensus 265 s~~~~~ 270 (297)
|+..+.
T Consensus 236 s~~~~~ 241 (246)
T PF01564_consen 236 SKDINL 241 (246)
T ss_dssp ESSTTT
T ss_pred eCCCCc
Confidence 988743
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=353.30 Aligned_cols=238 Identities=32% Similarity=0.605 Sum_probs=214.9
Q ss_pred ccccceEEee--eccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCC
Q 022451 26 YRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP 103 (297)
Q Consensus 26 ~~~~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~ 103 (297)
.....|++|. .+++.+..|++.++|++++|+||+|.|+++..+|++|++||.+|++++|++.|||+|+|+|++.++++
T Consensus 13 ~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~p 92 (308)
T PLN02366 13 TVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP 92 (308)
T ss_pred hhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCC
Confidence 3447899987 35677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D 182 (297)
++||+||||+|+++++++++++..+|++||||++|+++||++|+.....+++||++++++||+.|++.. +++||+|++|
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 999999999999999999997778999999999999999999975433467899999999999999865 5689999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-CceeEEEEecCccC-Ccee
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSFA-DTWG 260 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~~~~~~vp~~~-~~~~ 260 (297)
+++|. ++...|++.+||+. ++++|+|||++++|.++| |...+.++.+.++++++| +.+..|.+.+|+|+ +.|+
T Consensus 173 ~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~ 247 (308)
T PLN02366 173 SSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIG 247 (308)
T ss_pred CCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceE
Confidence 99887 56678999999999 899999999999998877 677888999999999999 56777788999996 4699
Q ss_pred EEEEecCC
Q 022451 261 WIMVSIYN 268 (297)
Q Consensus 261 ~~~as~~~ 268 (297)
|++||+++
T Consensus 248 f~~as~~~ 255 (308)
T PLN02366 248 FVLCSKEG 255 (308)
T ss_pred EEEEECCC
Confidence 99999984
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=350.58 Aligned_cols=263 Identities=38% Similarity=0.706 Sum_probs=226.1
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
...|++|..+++.+..+.+.++|++++|+||+|.|+++..+|++|++||..|+++++++.|||+|+|+|++.++++++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL 81 (283)
T PRK00811 2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL 81 (283)
T ss_pred CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence 35799999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
+||||+|.++++++++++..+|++||+|+.+++.|+++|+. ....+++||++++.+|++.|++..+++||+|++|+++|
T Consensus 82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP 161 (283)
T ss_pred EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence 99999999999999987788999999999999999999974 33334689999999999999987678999999999988
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEe
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVS 265 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as 265 (297)
. .+...|++.+||+. ++++|+|||+++++..+| +...+.++.+.++++++|+.+.+|...+|+|+ +.|+|++||
T Consensus 162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as 236 (283)
T PRK00811 162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFAS 236 (283)
T ss_pred C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEee
Confidence 7 55568999999999 799999999999998776 45677899999999999999999999999995 559999999
Q ss_pred cCCCC-CCcccccc-cccccCCCCCCcccCCCCC
Q 022451 266 IYNPH-SHSILSLS-YFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 266 ~~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 297 (297)
+.+.. .++...+. +.+.. ....+|||+-.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~--~~~~~yy~~~~h 268 (283)
T PRK00811 237 KNDDLKFLPLDVIEARFAER--GIKTRYYNPELH 268 (283)
T ss_pred cCcccccCccccchhhHhhc--cCCCeEECHHHH
Confidence 85433 22222111 11110 113789987543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=344.58 Aligned_cols=242 Identities=17% Similarity=0.242 Sum_probs=206.6
Q ss_pred ceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEE
Q 022451 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (297)
Q Consensus 30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~i 109 (297)
+|++|..+++.+..+++.++|++++|+||+|.|+++..+||+|+|| ..|+++.||+.|||||+|+|++.|++|++||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 5999988889999999999999999999999999999999999999 555699999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCC
Q 022451 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (297)
Q Consensus 110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~ 189 (297)
|+|.|+.++++++|. .+|+.||||++|+++||+||+....+++|||++++.. +.+...++||+||+|+.
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~----- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE----- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEEEcCC-----
Confidence 999999999999985 4999999999999999999996555789999999972 33323478999999953
Q ss_pred CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCC
Q 022451 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
++.+||+. ++++|+|||+++++.++| +...+.++.+.++++++|+.+.+|.+.+|+++ .|+|++||+...
T Consensus 149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g-~wgf~~aS~~~~ 218 (262)
T PRK00536 149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPLRILS-NKGYIYASFKTH 218 (262)
T ss_pred ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecCCCcc-hhhhheecCCCC
Confidence 34699999 899999999999999988 66788999999999999999999999999995 699999998753
Q ss_pred CCCcccccccccccCCCCCCcccCCCCC
Q 022451 270 HSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 270 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
+... ..+++ .+.....+|||+-.|
T Consensus 219 p~~~-~~~~~---~~~~~~lryy~~~~h 242 (262)
T PRK00536 219 PLKD-LMLQK---IEALKSVRYYNEDIH 242 (262)
T ss_pred Cccc-hhhhh---hcccCCceeeCHHHH
Confidence 2211 11111 222233689987543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=340.55 Aligned_cols=261 Identities=39% Similarity=0.728 Sum_probs=230.2
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
...|+.|..++..+..+++.+++++++|+||.|.++++.++|++|.+||..|+++++++.|||+++|++++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 46899998887888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~ 187 (297)
+||+|+|+++++++++.+.+++++|||||+|+++||+||+.......|||++++++||.+|++...++||+||+|.++|.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999999899999999999999999999986543334899999999999999988789999999999995
Q ss_pred CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCc-eeEEEEec
Q 022451 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADT-WGWIMVSI 266 (297)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~-~~~~~as~ 266 (297)
+|+..|++.+||+. ++++|+|+|++++|+++| +.+.+....+.+.++++|+.+.+|...+|+++.+ |+|+++|.
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 88889999999999 799999999999998887 6777888999999999999999999999999765 99999995
Q ss_pred CCCCCCccccccccc--ccCCCCCCcccCCCC
Q 022451 267 YNPHSHSILSLSYFE--NLDSSRPNSFTSPIN 296 (297)
Q Consensus 267 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~ 296 (297)
+.. +++.++.... .... ..++|||+-.
T Consensus 237 ~~~--~~~~~~~~~~~~~~~~-~~~~yy~~~~ 265 (282)
T COG0421 237 NKA--HPLKSLDALQARALAL-LTLKYYNEDI 265 (282)
T ss_pred CCC--CcccchhHHHHHHhhh-hhhccCcHHH
Confidence 542 3333322222 2223 5568887643
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=322.61 Aligned_cols=232 Identities=38% Similarity=0.753 Sum_probs=212.4
Q ss_pred eEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEc
Q 022451 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG 110 (297)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG 110 (297)
|++|..+++.+..++++++|++++|+||+|.|+++..+|++|++||..|+++.+++.|+|+++|++++.+++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 88888889999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCC
Q 022451 111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG 190 (297)
Q Consensus 111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~ 190 (297)
||+|.++++++++.+..++++||+|+++++.|+++|+.....+.+++++++.+|++++++...++||+|++|.++|. .
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999987678999999999999999999875434467899999999999999877789999999999876 4
Q ss_pred CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEecC
Q 022451 191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVSIY 267 (297)
Q Consensus 191 p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as~~ 267 (297)
+...|++.+||+. ++++|+|||+++++..+| +...+.++.+.++++++|+.+.+|.+.+|+|+ +.|+|++||+.
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 5568999999999 899999999999997766 55678889999999999999999999999995 46999999983
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=324.99 Aligned_cols=257 Identities=32% Similarity=0.496 Sum_probs=214.4
Q ss_pred eeecCCc-----ccccccccccccCCcc-cc--ceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcC
Q 022451 5 SCSNGIS-----QANGADAKNVALTGYR-KS--CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG 76 (297)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~~~~~~-~~--~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg 76 (297)
+-+.||. |-|...++||.|-... .. .|- +.+-.. +-.+..++|++++|+||+|.|+++..+ .|++||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG 124 (374)
T PRK01581 50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EISLKE-IQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK 124 (374)
T ss_pred eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHHHHH-HhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence 3455664 5566777888764322 22 232 222111 112456899999999999999999976 699999
Q ss_pred ccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccCCC
Q 022451 77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAF 153 (297)
Q Consensus 77 ~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~---~~~~~ 153 (297)
.+|++++||+.|||+|+|+++..+++|++||+||||+|.++++++++.+..+|++|||||+|+++|++++.+ +...+
T Consensus 125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 999999999999999999999999999999999999999999999987789999999999999999986432 34456
Q ss_pred CCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHH
Q 022451 154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (297)
Q Consensus 154 ~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~ 233 (297)
++||++++++||++|++...++||+|++|+++|... +...|++.+||+. ++++|+|||+++++..+| +.....++.
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~ 280 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-LLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS 280 (374)
T ss_pred CCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-chhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence 789999999999999988778999999999987632 3468999999999 799999999999998777 455667788
Q ss_pred HHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCC
Q 022451 234 IYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPH 270 (297)
Q Consensus 234 i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~ 270 (297)
+.++++++|+.+.+|.+.+|+|++.|+|++||+.+..
T Consensus 281 i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~ 317 (374)
T PRK01581 281 IGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYV 317 (374)
T ss_pred HHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccc
Confidence 9999999999999999999999988999999997654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=298.21 Aligned_cols=236 Identities=31% Similarity=0.538 Sum_probs=211.2
Q ss_pred cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH
Q 022451 38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117 (297)
Q Consensus 38 ~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~ 117 (297)
.-.++++-.++++|..+|+||+|.|.+..+ .+.|++||..|.+.+||..|||.++++++...+..++||++|+|+|..+
T Consensus 226 ~~~eqqlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAl 304 (508)
T COG4262 226 HTSEQQLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLAL 304 (508)
T ss_pred ehHHHHhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHH
Confidence 334556667899999999999999999775 4789999999999999999999999998877788899999999999999
Q ss_pred HHHHhcCCCcEEEEEECCHHHHHHHHhhh---hhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccC
Q 022451 118 REILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYK 194 (297)
Q Consensus 118 ~~l~~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~ 194 (297)
+++++++...+|+.||+||+|++++++.. ..++.++.|||++++..|+.+|++...+.||+||+|++||.... ...
T Consensus 305 RellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~r 383 (508)
T COG4262 305 RELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGR 383 (508)
T ss_pred HHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhh
Confidence 99999977999999999999999999653 25677899999999999999999998899999999999997533 368
Q ss_pred cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCCCCcc
Q 022451 195 LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSHSI 274 (297)
Q Consensus 195 L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~~~~i 274 (297)
+|+.|||.. ++++|+++|.+++|.++| +..++.++++..|+++..-.+.||.+++|+|++ |+|++|++.+..-++.
T Consensus 384 lYS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fep~ 459 (508)
T COG4262 384 LYSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFEPP 459 (508)
T ss_pred hhhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCCCC
Confidence 999999999 899999999999999988 778899999999999998889999999999998 9999999998776654
Q ss_pred ccccc
Q 022451 275 LSLSY 279 (297)
Q Consensus 275 ~~~~~ 279 (297)
.+..+
T Consensus 460 ~e~~~ 464 (508)
T COG4262 460 TEYRP 464 (508)
T ss_pred cccCc
Confidence 44443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=310.83 Aligned_cols=254 Identities=31% Similarity=0.540 Sum_probs=211.0
Q ss_pred eEEeeeccccccccccccEEEEeeCCCCcEEEEEeCC-ce--eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 31 w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~-~g--~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
|..+.........+..++++++++|+||+|.|+++.. .| +.|++||..|++++|++.|||+++|+++..++++++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL 302 (521)
T PRK03612 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL 302 (521)
T ss_pred HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 4555444444556677899999999999999999766 35 88999999999999999999999999998889999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh--h-hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f--~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+||||+|.++++++++++..+|++||+||+|++.||+++ . .+...++|||++++.+|++++++..+++||+|++|++
T Consensus 303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~ 382 (521)
T PRK03612 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP 382 (521)
T ss_pred EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence 999999999999999865589999999999999999954 3 2334567899999999999999877789999999998
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEE
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIM 263 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~ 263 (297)
+|.... ...+++.|||+. ++++|+|||++++|..+| +...+.+..+.++++++ | .+.+|...+|+|+ .|+|++
T Consensus 383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g-~w~f~~ 456 (521)
T PRK03612 383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFG-EWGFVL 456 (521)
T ss_pred CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcc-hhHHHe
Confidence 876322 257999999999 899999999999998877 56678889999999999 8 8999999999996 699999
Q ss_pred EecCCCCCCcccccccccccCCCCCCcccCCCCC
Q 022451 264 VSIYNPHSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 264 as~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
||+.+.+... ...+ .+...+|||+-.|
T Consensus 457 as~~~~~~~~----~~~~---~~~~~~~y~~~~h 483 (521)
T PRK03612 457 AGAGARPPLA----VPTE---LPVPLRFLDPALL 483 (521)
T ss_pred eeCCCCcccc----cchh---cccCCcccCHHHH
Confidence 9987543221 1111 1245799987544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=266.88 Aligned_cols=269 Identities=28% Similarity=0.528 Sum_probs=235.2
Q ss_pred CCccccceEEeeec-----cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHh
Q 022451 24 TGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98 (297)
Q Consensus 24 ~~~~~~~w~~~~~~-----~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~ 98 (297)
-.....+|+.|... |+.+.++.++++++.++|.||++.|+++..+|++|.+||..|.+++|++.|.||+.|+|++
T Consensus 38 h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~ 117 (337)
T KOG1562|consen 38 HPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALC 117 (337)
T ss_pred cCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccc
Confidence 34556789987643 2777888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD 177 (297)
.+++|++||+||+|+|+..++..+|....+|+.+|+|..+++..++|++.....+++++|.++.+|+..|++.. .++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 99999999999999999999999998889999999999999999999996655689999999999999999886 67899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA- 256 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~- 256 (297)
+||.|..+|. +|+..+|-+.+|+. +++.||+||+++++..+. |.+....+...+..+.+|+.+..--+.+|+|+
T Consensus 198 Vii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTyps 272 (337)
T KOG1562|consen 198 VIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPS 272 (337)
T ss_pred EEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCCcc
Confidence 9999999998 88889999999999 899999999999997654 88888999999999999996543336889997
Q ss_pred CceeEEEEecCCCC---CCccccccccccc-CCCCCCcccCCCCC
Q 022451 257 DTWGWIMVSIYNPH---SHSILSLSYFENL-DSSRPNSFTSPINH 297 (297)
Q Consensus 257 ~~~~~~~as~~~~~---~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 297 (297)
+.-+|.+||+..+. ..+.++++..|.. -.+++.+|||+--|
T Consensus 273 g~igf~l~s~~~~~~~~~~p~n~i~~~e~~~l~~~~L~yyn~e~h 317 (337)
T KOG1562|consen 273 GRIGFMLCSKLKPDGKYKTPGNPITCKEQLSLYEEQLLYYNVEFH 317 (337)
T ss_pred ceEEEEEecccCCCCCccCCCCccCHHHHHhhhhhhhccCCchhc
Confidence 45789999964443 5677888877776 34456699987543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=215.37 Aligned_cols=204 Identities=21% Similarity=0.326 Sum_probs=162.1
Q ss_pred EEeeCCCCcEEEEEeCCceeEEEEcCc-ccccc----C--ChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhc
Q 022451 51 HTGETRYQDIALLDTKPFGKALVIDGK-LQSAE----V--DEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH 123 (297)
Q Consensus 51 ~~~~s~~~~i~V~~~~~~g~~L~ldg~-~q~~~----~--d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~ 123 (297)
...++.|+.|.|+|...+ |+|.+|+. .|+.. + ..+.|+++|.. .+...+++++||+||||+|.++..++++
T Consensus 10 ~~~~~~~~~i~v~e~~~~-R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l~~~ 87 (262)
T PRK04457 10 RPAKAGFPEVGVSEEGGV-RSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFIYTY 87 (262)
T ss_pred ccccccCCCcEEEecCCE-EEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHHHHh
Confidence 346678999999999874 99999884 67653 2 23579998863 4445678899999999999999999988
Q ss_pred CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 124 KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 124 ~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
.|..+|++||+||++++.|+++|.... .++|++++++|+++++....++||+|++|.++.. .+...+.+.+||+.
T Consensus 88 ~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~ 162 (262)
T PRK04457 88 LPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD 162 (262)
T ss_pred CCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH
Confidence 788899999999999999999987642 3589999999999999876778999999988644 23357889999999
Q ss_pred HHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCC
Q 022451 204 VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPH 270 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~ 270 (297)
++++|+|||++++|. +.....+..++++++++|+.+..+ +|....+|..++|++..+.
T Consensus 163 -~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~~~~---~~~~~~~N~v~~a~~~~~~ 220 (262)
T PRK04457 163 -CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGRVLE---LPAESHGNVAVFAFKSAPK 220 (262)
T ss_pred -HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCcEEE---EecCCCccEEEEEECCCCC
Confidence 799999999999985 334455678899999999863322 2433445777888876543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=139.00 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=137.0
Q ss_pred eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 022451 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (297)
Q Consensus 70 ~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (297)
-.+.+||..|.......++..++....+......++|||.+.|-|.++.++++. +..+|..||-||.|+++|+-+ ++.
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence 468899988776555566777777766665567999999999999999999986 456999999999999999876 333
Q ss_pred cCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC-CcCC
Q 022451 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IFSH 227 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~-~~~~ 227 (297)
.. +...+++++.+|+.+++++- ++.||+||+|++.-. .+..||+.+||++ +.+.|+|||.+.-.++.|+ .+..
T Consensus 180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 32 23458999999999999874 567999999998432 2358999999999 8999999999999998887 3445
Q ss_pred chHHHHHHHHHHhh-CCcee
Q 022451 228 TEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 228 ~~~~~~i~~~l~~~-F~~v~ 246 (297)
....+.+.+.|+++ |-.|.
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CChhHHHHHHHHhcCceeee
Confidence 66778888999988 65443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=119.86 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||||||+|.++.++++..+..+|++||+||.+++.|++++.... ..+|++++.+|+ .+.....++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 3578999999999999999996567899999999999999999984322 358999999999 555455678999999
Q ss_pred cC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ..+. ... .-...++++. +++.|+|||+++++.
T Consensus 77 ~~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 87 2111 010 0122467888 799999999999874
|
... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-14 Score=110.57 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=85.4
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D 182 (297)
.+|||+|||+|.++..+++.. ..+++++|+||..+++|++++.... -.++++++.+|.++..+. ...+||+|+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999999876 6899999999999999999987653 246899999999988733 46889999999
Q ss_pred CCCCCC-CCC-ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIE-GGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~-~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-... ... ...-...+|++. +.+.|+|||++++.+
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence 974211 011 111234589999 799999999998764
|
... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.7e-13 Score=117.42 Aligned_cols=136 Identities=19% Similarity=0.280 Sum_probs=105.2
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-CC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ES 175 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~~ 175 (297)
....+..++|||||||.|.++..+++..+..+|++||+++++.+.|+++..++. -.+|++++++|.-++.+... .+
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhcccccc
Confidence 333445899999999999999999998666899999999999999999988754 24899999999999887644 45
Q ss_pred ceEEEEcCCC--CCCC-CC--c-------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-C
Q 022451 176 YDVIIGDLAD--PIEG-GP--C-------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-F 242 (297)
Q Consensus 176 yD~Ii~D~~~--~~~~-~p--~-------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F 242 (297)
||+|++++|- .... .+ . ..+.-.++++. ++++|+|||.+++- ...+.+..+...+++. |
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIELLKSYNL 187 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHHHHhcCC
Confidence 9999999972 1111 11 0 12333568887 79999999999875 2456778889999883 4
Q ss_pred C
Q 022451 243 K 243 (297)
Q Consensus 243 ~ 243 (297)
.
T Consensus 188 ~ 188 (248)
T COG4123 188 E 188 (248)
T ss_pred C
Confidence 4
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=119.22 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..+.. ++++++.+|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----ENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----ccccccccccccccc--ccceeEEEE
Confidence 67899999999999999999987777899999999999999999887641 239999999877654 578999999
Q ss_pred cCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|-.. +.. ....-.+|++. ++++|+|||.+.+-.... .. .. ..+++.|..+...
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~---~~---~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LG---YE---RLLKELFGDVEVV 160 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SC---HH---HHHHHHHS--EEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CC---hH---HHHHHhcCCEEEE
Confidence 987432 211 12234688999 799999999886543221 11 12 2277788876544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=110.77 Aligned_cols=142 Identities=16% Similarity=0.210 Sum_probs=99.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++..... -++++++.+|+.++- . .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCC-C-CCCccEEE
Confidence 45789999999999999988876667899999999999999999876543 234999999998753 3 56899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc-eeEEEEecCccCCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY-VVPYSAHIPSFADTW 259 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~-v~~~~~~vp~~~~~~ 259 (297)
++... . -.++++. +.+.|+|||++++..... ....+.++...+ .-. ...|...+|...+..
T Consensus 118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~ 179 (187)
T PRK00107 118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKAL---GGKVEEVIELTLPGLDGER 179 (187)
T ss_pred Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc---CceEeeeEEEecCCCCCcE
Confidence 97531 1 1378888 799999999998875321 222222222222 222 233344567665555
Q ss_pred eEEEEec
Q 022451 260 GWIMVSI 266 (297)
Q Consensus 260 ~~~~as~ 266 (297)
-+++..|
T Consensus 180 ~~~~~~~ 186 (187)
T PRK00107 180 HLVIIRK 186 (187)
T ss_pred EEEEEec
Confidence 5666554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=114.18 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD~ 178 (297)
.+..+|||||||+|..+..+++..+..+|++||+++.+++.|++.+...+ -++++++.+|+.+.+. ..+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccce
Confidence 36789999999999999999887667799999999999999999876432 2679999999944444 23568999
Q ss_pred EEEcCCCCCCCCCc--cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 179 IIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 179 Ii~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|++..++|+...+. .......+++. +.+.|+|||++++.+. .......+.+.+++.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE 172 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence 99987666532111 12234689999 8999999999998742 345566777777654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=111.80 Aligned_cols=130 Identities=13% Similarity=0.165 Sum_probs=99.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
.....||+||||+|.++..+++..|..++++||+++.+++.|++.....+ -++++++.+|+..++.. ....+|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence 35568999999999999999987778899999999999999998765432 25899999999887643 2357999
Q ss_pred EEEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 179 IIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 179 Ii~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|+++.++||.... ...+...++++. +.+.|+|||.+.+.+. .......+...+.+.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 9999988873221 123556789999 8999999999988753 333455566666553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-12 Score=118.99 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=119.5
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD 133 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VE 133 (297)
.-|.|+|.-.... +|+.+.++-......++ ++.++...+...++..+|||||||+|.++..+++..+..+|+++|
T Consensus 208 gePlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 208 GEPVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CCCceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 3466666655443 46667776555454443 333332222222355799999999999999988766678999999
Q ss_pred CCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCcc------
Q 022451 134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKLY------ 196 (297)
Q Consensus 134 id~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L~------ 196 (297)
+|+.+++.|+++....+ .+++++.+|..+.......+||+|++++|- +... .|...|+
T Consensus 283 iS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL 357 (423)
T PRK14966 283 ISPPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGL 357 (423)
T ss_pred CCHHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchH
Confidence 99999999999976442 479999999865421123579999999972 1110 1111111
Q ss_pred --cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEe
Q 022451 197 --TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVS 265 (297)
Q Consensus 197 --t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as 265 (297)
-+.+++. +.++|+|||.+++..+. .+. ..+.+.+++. |..+.. .+.+.+...++++.
T Consensus 358 ~~yr~Ii~~-a~~~LkpgG~lilEiG~----~Q~---e~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~ 417 (423)
T PRK14966 358 SCIRTLAQG-APDRLAEGGFLLLEHGF----DQG---AAVRGVLAENGFSGVET----LPDLAGLDRVTLGK 417 (423)
T ss_pred HHHHHHHHH-HHHhcCCCcEEEEEECc----cHH---HHHHHHHHHCCCcEEEE----EEcCCCCcEEEEEE
Confidence 2345555 57899999999887642 233 3444555443 554433 24455545666654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=112.58 Aligned_cols=105 Identities=22% Similarity=0.348 Sum_probs=85.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---c--CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R--KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~--~~ 174 (297)
..|++||+||+++|..+..+++. ++..+|+.+|+||+..+.|+++|...+ -+.+++++.+|+.+++.. . .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 57899999999999999999975 456899999999999999999997543 136999999999998764 1 24
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+||+|+.- . -..++|.. +.+.|+|||++++.
T Consensus 121 ~fD~VFiDa~K--------~-~y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADK--------R-NYLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTG--------G-GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEcccc--------c-chhhHHHH-HhhhccCCeEEEEc
Confidence 79999999741 1 12378888 68999999999876
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=109.61 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=89.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
...+++||+||.+.|..+.+++...+ ..+++.+|+||+..+.|+++|...+ -+++++++. +|+.+.+.. ..+.|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCc
Confidence 35899999999999999999998655 7899999999999999999997554 256799999 699999975 46899
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+||+|+.-. ...+||+. +.+.|+|||++++-
T Consensus 134 DliFIDadK~---------~yp~~le~-~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDADKA---------DYPEYLER-ALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEEe
Confidence 9999997421 24589999 78999999999865
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-13 Score=110.29 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=84.4
Q ss_pred CCCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~ 178 (297)
....+|||+|||+|.++..++ +..+..++++||+++++++.|++.+.... -++++++++|..+ +... .++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeE
Confidence 357899999999999999999 56667899999999999999999876442 2589999999988 5421 278999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++..-.. .+ .-..+++. +.+.|+++|++++..
T Consensus 77 I~~~~~l~~--~~----~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHH--FP----DPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEEESTGGG--TS----HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEcCchhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 999965322 11 12367888 899999999998874
|
... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-11 Score=112.59 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++||++|||+|+++..++.. +..+|++||+|+.+++.|++++..++ ++.++++++.+|++++++. ..++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35789999999999998877654 46699999999999999999998764 2225899999999999854 246899
Q ss_pred EEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|+|.-. .....+. -.++++. +.++|+|||++++.++++
T Consensus 296 lVilDPP~f~--~~k~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 296 VIVMDPPKFV--ENKSQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EEEECCCCCC--CChHHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC
Confidence 9999987411 1101111 1234555 679999999999876554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=108.74 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=82.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+++|||+|||+|.++..++...+..+|++||+++.+++.++++....+ -++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999988876667899999999999999998875432 246999999998752 3568999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+... . -.++++. +.+.|+|||++++..+
T Consensus 116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcC
Confidence 7521 1 1367787 7999999999998754
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=113.01 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 90 e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
+.+.++++ ..+.+|.|||||.|..+..+++.+|...|+++|.|++|++.|++.+ |++++..+|.++|
T Consensus 21 dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w- 87 (257)
T COG4106 21 DLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW- 87 (257)
T ss_pred HHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc-
Confidence 44444443 5688999999999999999999999999999999999999998864 7789999999988
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.++..|+|+.++.-+| -| .+ .+.|.. +-..|+|||+|+++.
T Consensus 88 -~p~~~~dllfaNAvlqW--lp-dH---~~ll~r-L~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 -KPEQPTDLLFANAVLQW--LP-DH---PELLPR-LVSQLAPGGVLAVQM 129 (257)
T ss_pred -CCCCccchhhhhhhhhh--cc-cc---HHHHHH-HHHhhCCCceEEEEC
Confidence 34578999999988666 33 12 266777 789999999999995
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=112.53 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----C
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----K 173 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~ 173 (297)
...+++||+||+++|..+.+++.. ++..+|+++|.|++..+.|+++|...+ + .++++++.+|+.+.|..- .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l-~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--V-SHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhcccC
Confidence 357899999999999999998874 346689999999999999999997653 2 368999999999988642 3
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++||+||+|+..+ -..++|+. +.+.|+|||++++.
T Consensus 193 ~~FD~VFIDa~K~---------~Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDADKR---------MYQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEe
Confidence 5899999997521 12478888 78999999999876
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=105.83 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++.... -++++++.+|+...+ .++||+|
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v 101 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAI 101 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEE
Confidence 356789999999999999999987667899999999999999999876442 246999999975433 3579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+++.... . -.++++. +.+.|+|||.+++... .......+.+.+++. |..+..
T Consensus 102 ~~~~~~~-------~--~~~~l~~-~~~~Lk~gG~lv~~~~------~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 102 FIGGSGG-------N--LTAIIDW-SLAHLHPGGRLVLTFI------LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EECCCcc-------C--HHHHHHH-HHHhcCCCeEEEEEEe------cHhhHHHHHHHHHHCCCCcceE
Confidence 9874311 1 2467888 7999999999988742 122345556666654 544443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=101.29 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||.|..+..+++..+..+|+++|+++.+++.+++++.... .++++++.+|+...+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence 45679999999999999999987666899999999999999999876442 35789999997754443446899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.... . ..++++. +.+.|+|||.++++.
T Consensus 94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence 975311 1 2378898 799999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=119.36 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
..+|||||||+|.++..+++..|..+|++||+|+.+++.|++++..+... ...+++++.+|+...+ ..++||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence 46999999999999999998777889999999999999999998654210 1247899999986654 23579999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
++-+........ ...++|+. ++++|+|||.|.+-... .. .....+++.|+.+..
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~l----~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----HL----DYFHKLKKIFGNCTT 359 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----Cc----CHHHHHHHHcCCceE
Confidence 874331111111 23578888 79999999988776421 11 233567778887653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-13 Score=125.91 Aligned_cols=192 Identities=18% Similarity=0.210 Sum_probs=141.7
Q ss_pred hHHHHHHH-HHHh------cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE
Q 022451 87 IYHESLVH-PALL------HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE 159 (297)
Q Consensus 87 ~y~e~l~~-~~l~------~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~ 159 (297)
.||.+|.. .++. .+.....+|++|.|+|.+...+..+.|..++++||+||.|++.|++||++.. +.|.+
T Consensus 273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~ 348 (482)
T KOG2352|consen 273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK 348 (482)
T ss_pred chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence 57887752 3332 2345678999999999999999988888999999999999999999999874 34889
Q ss_pred EEEcchHHHHhcc------CCCceEEEEcCCCCCC---CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchH
Q 022451 160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (297)
Q Consensus 160 ~~~~Da~~~l~~~------~~~yD~Ii~D~~~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~ 230 (297)
++..||..|+++. +.+||+++.|...+.. ..|+..+....+++. ++..|.|.|++++|..+ .+...
T Consensus 349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~----r~~~~ 423 (482)
T KOG2352|consen 349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVT----RNSSF 423 (482)
T ss_pred hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEec----CCcch
Confidence 9999999998763 3579999999864322 235556778899999 89999999999999754 35566
Q ss_pred HHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCCCCCcccccccccccCCCCCCcccCCCC
Q 022451 231 FSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNPHSHSILSLSYFENLDSSRPNSFTSPIN 296 (297)
Q Consensus 231 ~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 296 (297)
...+...|+++|+....+. ..++.|..++|...+.. .+- ++++...+.-.++=++|+
T Consensus 424 ~~~~~~~l~~vf~~l~~~~----~~~~~N~il~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~ 480 (482)
T KOG2352|consen 424 KDEVLMNLAKVFPQLYHHQ----LEEDVNEILIGQMPPKQ-KPG----NLENLVRKMQGGYDDAIN 480 (482)
T ss_pred hHHHHHhhhhhhHHHhhhh----ccCCCceeEEeecChhc-Cch----hhhhhhhhhccCcccccc
Confidence 7788899999999865332 23466777777765532 111 144544444444445443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-11 Score=104.38 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...+..+|||+|||+|.++.++++. .+..+|+++|+++.+++.|++++...+. .++++++.+|+.+++.....+||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEEEechhhhHhhcCCCCC
Confidence 3456789999999999999988764 3457999999999999999998765421 26799999999887765557899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
.|++..... . -.++++. +.+.|+|||.+++.. ...+.+..+.+.+++. | .+....
T Consensus 114 ~V~~~~~~~-------~--~~~~l~~-~~~~LkpgG~lv~~~------~~~~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 114 RIFIGGGSE-------K--LKEIISA-SWEIIKKGGRIVIDA------ILLETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred EEEECCCcc-------c--HHHHHHH-HHHHcCCCcEEEEEe------ecHHHHHHHHHHHHHcCC-CeEEEE
Confidence 999964211 1 1367888 789999999998863 2345567777788665 4 444443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=103.60 Aligned_cols=125 Identities=24% Similarity=0.229 Sum_probs=102.5
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+...+...++|||||+|+++.+++...|..+|+++|-|++++++.+++....+ -++++++.+||-++|.... ++
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCCC-CC
Confidence 334456789999999999999999987889999999999999999999876443 3899999999999997654 89
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
|.||+.-.. . -.+.++. +..+|+|||.+++|. ...+....+++.+++.--
T Consensus 104 daiFIGGg~--------~--i~~ile~-~~~~l~~ggrlV~na------itlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 104 DAIFIGGGG--------N--IEEILEA-AWERLKPGGRLVANA------ITLETLAKALEALEQLGG 153 (187)
T ss_pred CEEEECCCC--------C--HHHHHHH-HHHHcCcCCeEEEEe------ecHHHHHHHHHHHHHcCC
Confidence 999998541 1 1377888 799999999999995 456777788888887633
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=111.70 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECC
Q 022451 56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 56 ~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid 135 (297)
|.++|.-.... +|..+.++..+-+..+......+..+. ..+....+.+|||+|||+|.++..+++..+..+|+++|+|
T Consensus 77 Pl~yi~g~~~f-~g~~f~v~~~vlipr~~te~lv~~~l~-~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 77 PVAYLTNEAWF-AGLEFYVDERVLIPRSPIAELIEDGFA-PWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred cHHHHcCCCee-cCcEEEECCCCccCCCchHHHHHHHHH-HHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 55555543322 256677775554444431111111110 0111234679999999999999999987677899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCc--------c
Q 022451 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKL--------Y 196 (297)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L--------~ 196 (297)
+.+++.|+++...++ -..+++++.+|+.+.+. .++||+|++|+|- +... .|...| .
T Consensus 155 ~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 155 PDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred HHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 999999999976543 13589999999877652 3579999999862 1100 010001 1
Q ss_pred cHHHHHHHHcccCCCCcEEEEecC
Q 022451 197 TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 197 t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+.+++. +.++|+|||.+++..+
T Consensus 230 ~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHH-HHHhcCCCCEEEEEEC
Confidence 2456777 6899999999999864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-11 Score=108.54 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC
Q 022451 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 55 s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi 134 (297)
-|.++|.-.... +|+-+.++....+..++.....+.... .+.......+|||+|||+|.++..++...+..+|+++|+
T Consensus 69 ~pl~yi~g~~~f-~g~~f~v~~~vliPr~ete~lv~~~l~-~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDi 146 (284)
T TIGR00536 69 VPVAYLLGSKEF-YGLEFFVNEHVLIPRPETEELVEKALA-SLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDI 146 (284)
T ss_pred CCHHHHhCcceE-cCeEEEECCCCcCCCCccHHHHHHHHH-HhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEEC
Confidence 455666443322 367777776655554442222222111 111122237899999999999999998777789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCC----------CCccCc--------
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKL-------- 195 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~----------~p~~~L-------- 195 (297)
++.+++.|+++....+ ...+++++.+|..+.+. .++||+|+++++- +... .|...|
T Consensus 147 s~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~ 221 (284)
T TIGR00536 147 SPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLN 221 (284)
T ss_pred CHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHH
Confidence 9999999999876443 12469999999876542 2479999999862 1110 110011
Q ss_pred ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh--hCCceeEEEEecCccCCceeEEEEe
Q 022451 196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VFKYVVPYSAHIPSFADTWGWIMVS 265 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~--~F~~v~~~~~~vp~~~~~~~~~~as 265 (297)
..+.+++. +.+.|+|||++++..+. .+. ..+.+.+.. .|..+.. .+.+.+...++++.
T Consensus 222 ~~~~ii~~-a~~~L~~gG~l~~e~g~----~q~---~~~~~~~~~~~~~~~~~~----~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 222 ILRQIIEL-APDYLKPNGFLVCEIGN----WQQ---KSLKELLRIKFTWYDVEN----GRDLNGKERVVLGF 281 (284)
T ss_pred HHHHHHHH-HHHhccCCCEEEEEECc----cHH---HHHHHHHHhcCCCceeEE----ecCCCCCceEEEEE
Confidence 23456777 68999999999998652 222 233333442 2444432 24455545666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.5e-12 Score=112.54 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~~ 174 (297)
..+++||+||||+|..+..+++. .+..+|+++|+|++.++.|++++...+ + .++++++.+|+.+.+..- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l-~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--V-DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 56899999999999998888764 456799999999999999999997653 2 368999999999987541 46
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|...+ . ..++++. +.+.|+|||++++.
T Consensus 144 ~fD~VfiDa~k~--------~-y~~~~~~-~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDADKP--------N-YVHFHEQ-LLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECCCHH--------H-HHHHHHH-HHHhcCCCeEEEEE
Confidence 899999997521 1 1267888 78999999999863
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-11 Score=107.21 Aligned_cols=176 Identities=17% Similarity=0.218 Sum_probs=109.6
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
|..+.++-.+....+......+.+.. .....++.+|||+|||+|.++..++...+..+++++|+++.+++.|++++..
T Consensus 77 ~~~~~~~~~~lipr~~te~l~~~~~~--~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~ 154 (275)
T PRK09328 77 GLDFKVSPGVLIPRPETEELVEWALE--ALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH 154 (275)
T ss_pred CcEEEECCCceeCCCCcHHHHHHHHH--hccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 45555554444444432223332221 1123456799999999999999999877778999999999999999998762
Q ss_pred ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC-----------CCCccCcc--------cHHHHHHHHccc
Q 022451 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPR 208 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~-----------~~p~~~L~--------t~ef~~~~~~~~ 208 (297)
. ...+++++.+|....+. .++||+|+++++- +.. ..|...++ -..+++. +.+.
T Consensus 155 ~----~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~ 227 (275)
T PRK09328 155 G----LGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRY 227 (275)
T ss_pred C----CCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHh
Confidence 1 23689999999855432 4689999999762 110 01111111 1456666 6799
Q ss_pred CCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCceeEEEEecCccCCceeEEEE
Q 022451 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPYSAHIPSFADTWGWIMV 264 (297)
Q Consensus 209 L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v~~~~~~vp~~~~~~~~~~a 264 (297)
|+|||.+++..+. ... ..+.+.+.+ -|..+..+ +.+.+...++++
T Consensus 228 Lk~gG~l~~e~g~----~~~---~~~~~~l~~~gf~~v~~~----~d~~~~~r~~~~ 273 (275)
T PRK09328 228 LKPGGWLLLEIGY----DQG---EAVRALLAAAGFADVETR----KDLAGRDRVVLG 273 (275)
T ss_pred cccCCEEEEEECc----hHH---HHHHHHHHhCCCceeEEe----cCCCCCceEEEE
Confidence 9999999997642 222 334444443 35554432 334444555554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=115.80 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=102.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.....+|+||||+|..+..+++..|...+++||+++.+++.|.+.....+ -++++++.+|++.++.. .++.+|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34568999999999999999987778899999999999999988765442 35799999999876543 35789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
++..++||...+...+...+|++. +.+.|+|||.+.+.+. ....+..+...+.+.
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence 999889984433345667899999 8999999999999863 334555556665543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-12 Score=113.27 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=96.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||.|.++..+++..|..+|+.||+|...++.||++...+.. ++.+++.+|..+-+. ++||+|++
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~~v~~s~~~~~v~---~kfd~Iis 230 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV----ENTEVWASNLYEPVE---GKFDLIIS 230 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC----CccEEEEeccccccc---ccccEEEe
Confidence 34599999999999999999988889999999999999999999886631 233788888765543 38999999
Q ss_pred cCCCCCCCCC-ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|.+. +. ...-...++++. ++++|++||-|-+-... . ...-..|.+.|.++...
T Consensus 231 NPPfh~--G~~v~~~~~~~~i~~-A~~~L~~gGeL~iVan~-----~----l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 231 NPPFHA--GKAVVHSLAQEIIAA-AARHLKPGGELWIVANR-----H----LPYEKKLKELFGNVEVL 286 (300)
T ss_pred CCCccC--CcchhHHHHHHHHHH-HHHhhccCCEEEEEEcC-----C----CChHHHHHHhcCCEEEE
Confidence 998543 21 112234589999 89999999977554321 1 12346688899987654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=109.19 Aligned_cols=128 Identities=22% Similarity=0.321 Sum_probs=105.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...+..+|++.|.|+|.++..++. ..+..+|+.+|+.++..+.|++++.... + .+++++..+|.++.... +.||
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l-~d~v~~~~~Dv~~~~~~--~~vD 165 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--L-GDRVTLKLGDVREGIDE--EDVD 165 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--c-ccceEEEeccccccccc--cccC
Confidence 346789999999999999999996 4566899999999999999999987542 2 35599999999988643 4899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
+|++|.++|| ++++. +++.|+|||.+++.. | .-++.+.....|++. |-+...+.
T Consensus 166 av~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P----~veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 166 AVFLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--P----TVEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred EEEEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--C----CHHHHHHHHHHHHhcCccchhhhe
Confidence 9999999988 66777 799999999999884 4 346778888888887 76655443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-12 Score=113.52 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++ .+++++.+|+.++. ..++||+|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-----------~~~~~~~~d~~~~~--~~~~fD~v 93 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-----------RGVDARTGDVRDWK--PKPDTDVV 93 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-----------cCCcEEEcChhhCC--CCCCceEE
Confidence 356789999999999999999987667799999999999999986 24788999987663 34689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-++. + . -..+++. +.++|+|||.+++..
T Consensus 94 ~~~~~l~~~--~--d--~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWV--P--E--HADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhC--C--C--HHHHHHH-HHHhCCCCcEEEEEc
Confidence 998764441 2 1 1468888 799999999998864
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-11 Score=107.85 Aligned_cols=155 Identities=21% Similarity=0.248 Sum_probs=105.3
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCD 133 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VE 133 (297)
.-|-++|.-... .+|..+.++-.+....+|.....+.+. .... ..+++|||||||+|.++..+++..+..+|+++|
T Consensus 66 ~~P~~yi~g~~~-f~gl~~~v~~~vliPr~dTe~Lve~~l--~~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 66 GEPVAYILGSAE-FGGLRFKVDEGVLIPRPDTELLVEAAL--ALLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred CCCHhHhhccCe-ecceeeeeCCCceecCCchHHHHHHHH--Hhhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 334455544322 236777888777777777444444332 1111 122289999999999999999988888999999
Q ss_pred CCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCC----------CCCccCc-------
Q 022451 134 IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIE----------GGPCYKL------- 195 (297)
Q Consensus 134 id~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~----------~~p~~~L------- 195 (297)
+||..+++|+++...++. .++.++.+|.+.-+ .++||+|++++| -|.. ..|...|
T Consensus 142 is~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl 214 (280)
T COG2890 142 ISPDALALARENAERNGL----VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGL 214 (280)
T ss_pred CCHHHHHHHHHHHHHcCC----ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHH
Confidence 999999999999876531 45667777765544 348999999997 2221 0110001
Q ss_pred -ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 196 -YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 196 -~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.|+.. +.+.|+|||++++..+
T Consensus 215 ~~~~~i~~~-a~~~l~~~g~l~le~g 239 (280)
T COG2890 215 EVYRRILGE-APDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHh-hHHHcCCCcEEEEEEC
Confidence 23457777 7899999999999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=116.77 Aligned_cols=192 Identities=18% Similarity=0.273 Sum_probs=122.5
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhc--------------------------CCCCCeEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH--------------------------HPNPKTIF 107 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~--------------------------~~~~~~VL 107 (297)
.-|.|+|.-.... +|+-+.+|-.+-+..++. |.++...+.. ...+.+||
T Consensus 69 ~ePlqYI~G~~~F-~g~~f~V~~~VLIPRpeT----E~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VL 143 (506)
T PRK01544 69 HEPIAYITGVKEF-YSREFIVNKHVLIPRSDT----EVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNIL 143 (506)
T ss_pred CCCHHHHhCcCEE-cCcEEEeCCCcccCCCcH----HHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEE
Confidence 3466676654444 478889998888887663 3333222110 11356899
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-C
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-P 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~ 186 (297)
|+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+ -.++++++.+|..+.+. .++||+|+++++- +
T Consensus 144 DlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 144 ELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVSNPPYIS 218 (506)
T ss_pred EccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEECCCCCC
Confidence 9999999999998876667899999999999999999876442 13589999999876552 3579999999862 1
Q ss_pred CC-----------CCCccCcc--------cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCcee
Q 022451 187 IE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 187 ~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~ 246 (297)
.. ..|...|+ -+.+++. +.+.|+|||.+++..+ ..+. ..+.+.+.+. |..+.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig----~~q~---~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG----FKQE---EAVTQIFLDHGYNIES 290 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC----CchH---HHHHHHHHhcCCCceE
Confidence 10 01111122 1234556 5789999999998754 2233 3444444443 44433
Q ss_pred EEEEecCccCCceeEEEEecC
Q 022451 247 PYSAHIPSFADTWGWIMVSIY 267 (297)
Q Consensus 247 ~~~~~vp~~~~~~~~~~as~~ 267 (297)
.+ +.+.+...+++++..
T Consensus 291 ~~----~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 291 VY----KDLQGHSRVILISPI 307 (506)
T ss_pred EE----ecCCCCceEEEeccc
Confidence 22 344444555555433
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=111.34 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=103.7
Q ss_pred CCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC
Q 022451 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 55 s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi 134 (297)
-|.|+|.-.... +|..+.++..+-+..++.....+.... .......+.+|||+|||+|.++..+++..+..+|+++|+
T Consensus 88 ~Pl~yi~g~~~F-~g~~f~v~~~vlipr~~te~lv~~~l~-~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDi 165 (307)
T PRK11805 88 IPAAYLTNEAWF-CGLEFYVDERVLVPRSPIAELIEDGFA-PWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDI 165 (307)
T ss_pred ccHHHHcCcceE-cCcEEEECCCCcCCCCchHHHHHHHHH-HHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeC
Confidence 456666543333 356677776554544432111111110 111111237899999999999999998777789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC----------CCCccCc--------
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKL-------- 195 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~----------~~p~~~L-------- 195 (297)
|+.+++.|++++...+ -..+++++.+|+.+.+. .++||+|++++|- +.. ..|...|
T Consensus 166 s~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 166 SPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred CHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 9999999999986542 13579999999877653 3579999999762 110 0111111
Q ss_pred ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 196 YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+.+.+++. +.+.|+|||.+++..+
T Consensus 241 ~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 241 LVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 12467777 6899999999999864
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=107.26 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=86.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||||-++..+.+..+..+|+++|+++.|++.|++...... ...++++++||.+ |.-.++.||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence 47899999999999999999998778899999999999999999875321 1229999999865 556788999999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.-.-..... -...+++ +.|+|+|||++++..
T Consensus 125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence 8754322111 2368888 899999999887664
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=110.82 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=83.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++....+ ..++++++.+|+.+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 46789999999999999999986 4689999999999999999875432 236899999999876444457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+...| ..+++. +.+.|+|||++++..
T Consensus 118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEEE
Confidence 87542221122 367888 799999999998653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=113.38 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=92.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ -..+++.+|+...+ .++||+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence 3568999999999999999987777799999999999999999887553 23577888876543 468999999
Q ss_pred cCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+++-+. +.. ..-...+|++. +.++|+|||.+.+-... +.. +. ..+.+.|+.+...
T Consensus 268 NPPFH~--g~~~~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l~---y~---~~l~~~Fg~~~~l 323 (342)
T PRK09489 268 NPPFHD--GIQTSLDAAQTLIRG-AVRHLNSGGELRIVANA---FLP---YP---DLLDETFGSHEVL 323 (342)
T ss_pred CCCccC--CccccHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CCC---hH---HHHHHHcCCeEEE
Confidence 986433 111 11124688999 89999999988665422 111 11 3456678876544
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=111.43 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=82.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++ ++++++.+|+..+. ...+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4578999999999999999988766789999999999999999863 46889999987664 345899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++..-++. + -...+++. +.++|+|||.+++..
T Consensus 99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence 98764441 1 12478898 799999999999874
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=104.36 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+ -++++++.+|+.+.+ ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence 45679999999999999999987667899999999999999999876542 247999999987754 247899999
Q ss_pred EcCCCCCCCCC---ccCc-----------------ccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGP---CYKL-----------------YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p---~~~L-----------------~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-.....+ .... .-..+++. +.+.|+|||.+++..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEI 217 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEE
Confidence 99862110000 0000 01357788 789999999999875
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.8e-11 Score=101.44 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||+|.++.++++..+..+|++||+||.+++.|++++...+ -++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 45689999999999999998876566899999999999999999886442 24799999999775544334578888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++... + -.++++. +.++|+|||.+++..
T Consensus 115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence 86421 1 1477888 789999999999885
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-11 Score=106.77 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..+ +++++.+|..+++.. ..++||+|+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEE
Confidence 346899999999999999987666679999999999999999987643 147899998877643 235799999
Q ss_pred EcCC-CCCC-----------CCCccCcc--------cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 181 GDLA-DPIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 181 ~D~~-~~~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+|+| .+.. ..|...|. -+.+++. +.+.|+|||.+++..+. .....+...+++
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~-------~~~~~v~~~l~~ 230 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSE-------RQAPLAVEAFAR 230 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc-------chHHHHHHHHHH
Confidence 9986 2211 01100111 2466666 68999999999987532 233556666665
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=100.85 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=96.3
Q ss_pred cEEEEEeCCceeEEEE-cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHH
Q 022451 59 DIALLDTKPFGKALVI-DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 59 ~i~V~~~~~~g~~L~l-dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
.++|+.....|+.|.. ++... .+....-.+.+.. .+.......+|||+|||+|.++.+++... ..+|++||+|+.
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~--Rp~~d~v~e~l~~-~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGL--RPTTDRVRETLFN-WLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCc--CcCCHHHHHHHHH-HHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 4777777766776654 21111 1111111122221 11112356799999999999999876653 579999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEE
Q 022451 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIF 215 (297)
Q Consensus 138 vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl 215 (297)
+++.+++++...+ -.+++++.+|+.+++....++||+|++|+|-.. + + ..+.++. +. ..|+|+|++
T Consensus 88 a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv 155 (199)
T PRK10909 88 VAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALI 155 (199)
T ss_pred HHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEE
Confidence 9999999987653 247999999999988544457999999987311 1 1 2344444 33 458999999
Q ss_pred EEec
Q 022451 216 VTQA 219 (297)
Q Consensus 216 ~~~~ 219 (297)
++..
T Consensus 156 ~ve~ 159 (199)
T PRK10909 156 YVES 159 (199)
T ss_pred EEEe
Confidence 9885
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=109.55 Aligned_cols=108 Identities=17% Similarity=0.289 Sum_probs=82.0
Q ss_pred CCCCeEEEEccchhHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
++..+|||||||+|..+..+++ ..+..++++||+++.|++.|++++.... ...+++++.+|+.+.. ...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence 5678999999999999988876 3467899999999999999999876432 1358999999976542 245999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-+.. .+ -....+++. +.+.|+|||.+++..
T Consensus 129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9887543221 11 012468898 799999999998864
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-11 Score=111.21 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=90.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---CCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~~~yD~ 178 (297)
.+++||++-|=||+.+.+++.. +..+||.||+|..+++.|++++.+++ +...+++++++|+++|++.. +.+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 4899999999999999998874 56799999999999999999999885 34578999999999999764 359999
Q ss_pred EEEcCCCCCCCCCccCcc--c---HHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLY--T---KSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~--t---~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||+|||.-.. ++ ..++ . .+.... +.+.|+|||++++-+++.
T Consensus 294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence 9999984321 12 1221 1 123444 579999999999887654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-11 Score=100.60 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++||++|||+|.++..+.+..+ +|+++|+++.+++.+++++...+ .+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence 4567899999999999999998643 89999999999999999886542 46889999976643 35899999
Q ss_pred EcCCCCCCCCC-c--------------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 181 GDLADPIEGGP-C--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~~~~~~p-~--------------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
++++-...... . .......+++. +.+.|+|||.+++..... .....+...+++.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~~~~------~~~~~~~~~l~~~ 156 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQSSL------NGEPDTFDKLDER 156 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEEecc------CChHHHHHHHHhC
Confidence 99763211000 0 00113568888 799999999988764221 1134556666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=111.19 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=73.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.|++.|++...... ..+++++.+|+.+ +.-.+++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~-lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAED-LPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHH-hcCCCCceeE
Confidence 356789999999999999999886 345799999999999999999876442 2489999999876 4445689999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.. .+ . -...+++ +.|+|+|||.+++-.
T Consensus 120 v~~~fglrn--~~--d--~~~~l~E-~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 120 VTCSFGLRN--FP--D--RERALRE-MYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEES-GGG---S--S--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEHHhhHHh--hC--C--HHHHHHH-HHHHcCCCeEEEEee
Confidence 998753211 11 1 2367888 899999999887653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=106.27 Aligned_cols=108 Identities=13% Similarity=0.064 Sum_probs=83.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+++++|||+|||+|.++..+++. .+..+|+++|+++.+++.|++.+.... -++++++.+|+.+.. ...++||+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~-~~~~~fD~ 117 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAMELP-FDDNSFDY 117 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhcCC-CCCCCccE
Confidence 345789999999999999999876 356799999999999999999875332 357999999987642 23578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.+ .+ . ..++++. +.+.|+|||.+++..
T Consensus 118 V~~~~~l~~--~~--~--~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 118 VTIGFGLRN--VP--D--YMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEeccccc--CC--C--HHHHHHH-HHHHcCcCeEEEEEE
Confidence 998754322 11 1 2367888 799999999998654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-12 Score=94.31 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=73.7
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
||||||+|..+..+.++ +..+++++|+++.+++.+++... ..+++++.+|+..+ .-.++.||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999998 67899999999999999999754 24567999998775 44578999999876532
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+. + --..++++ +++.|||||.+++
T Consensus 72 ~~--~----~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--E----DPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS--S----HHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec--c----CHHHHHHH-HHHHcCcCeEEeC
Confidence 21 1 13478898 7999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-11 Score=106.34 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=87.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc------
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------ 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~------ 172 (297)
...+++||+||++.|..+..+++. ++..+|+.+|+|++..+.|+++|...+ + .++++++.+|+.+.|...
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhcccc
Confidence 357899999999999999988864 456799999999999999999997543 1 379999999999988652
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.++||+||+|..- .. ..++|+. +.+.|+|||++++-
T Consensus 154 ~~~fD~iFiDadK--------~~-Y~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVDADK--------DN-YINYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEecCCH--------HH-hHHHHHH-HHHhcCCCeEEEEc
Confidence 2689999999741 11 2478888 68999999999864
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=100.57 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=100.0
Q ss_pred eEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 022451 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (297)
Q Consensus 70 ~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (297)
..+.+|..+...... ..-..++..........+++|||+|||+|.++..+.+.. ..+|+++|+||.+++.|++++..+
T Consensus 88 ~~i~i~p~~afgtg~-h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGT-HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCC-CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc
Confidence 456677655443211 112223322211123568899999999999998887753 457999999999999999998755
Q ss_pred cCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCch
Q 022451 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE 229 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~ 229 (297)
+. ..++.+..+|. +||+|+.+.... . -..+++. +.++|+|||.+++... ...
T Consensus 166 ~~---~~~~~~~~~~~---------~fD~Vvani~~~-------~--~~~l~~~-~~~~LkpgG~lilsgi------~~~ 217 (250)
T PRK00517 166 GV---ELNVYLPQGDL---------KADVIVANILAN-------P--LLELAPD-LARLLKPGGRLILSGI------LEE 217 (250)
T ss_pred CC---CceEEEccCCC---------CcCEEEEcCcHH-------H--HHHHHHH-HHHhcCCCcEEEEEEC------cHh
Confidence 31 13444444432 799999875421 1 1367777 7899999999998642 122
Q ss_pred HHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEec
Q 022451 230 VFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 230 ~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as~ 266 (297)
....+...+++. |..+.... .+.|..+++.+
T Consensus 218 ~~~~v~~~l~~~Gf~~~~~~~------~~~W~~~~~~~ 249 (250)
T PRK00517 218 QADEVLEAYEEAGFTLDEVLE------RGEWVALVGKK 249 (250)
T ss_pred hHHHHHHHHHHCCCEEEEEEE------eCCEEEEEEEe
Confidence 345666667665 44332211 23477666554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=105.54 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=82.4
Q ss_pred CCCCeEEEEccchhHHH-HHHH-hcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTA-REIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..|++|++||||.|.++ ..++ ++.+..+++++|+|+++++.||+.+.. .+ -.++++|+.+|+.+... ..++||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcC
Confidence 47899999999977443 3333 466788999999999999999999853 22 14789999999987532 246799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++++-..+... .-.+.++. +.++|+|||++++..
T Consensus 198 lVF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence 9999954333111 12478888 799999999999885
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=108.61 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=81.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||+|||+|.++..+.+.. +..+|++||+++.|++.|++....... ...++++++.+|+.+. .-.++.||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 457899999999999998888753 456999999999999999876542110 0235899999998653 3345689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+. .+ . -..++++ +.++|+|||.+++-.
T Consensus 150 ~~~~~l~~--~~--d--~~~~l~e-i~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRN--VV--D--RLKAMQE-MYRVLKPGSRVSILD 182 (261)
T ss_pred EEeccccc--CC--C--HHHHHHH-HHHHcCcCcEEEEEE
Confidence 98654322 11 1 2478899 899999999987653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-10 Score=119.60 Aligned_cols=171 Identities=18% Similarity=0.144 Sum_probs=110.5
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhcCC----CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHP----NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~----~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
|..|.++..+-+..++ +|.++.. +..++ .+++|||||||+|.++..+++..+..+|+++|+|+++++.|++
T Consensus 86 ~l~~~V~p~VLIPRpe----TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 86 KLTMMEIPSIFIPEDW----SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred CCceeeCCCcccCchh----HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4455666655566554 3333322 21122 2468999999999999999987667899999999999999999
Q ss_pred hhhhccCC------------CCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC-----------CCC---------
Q 022451 145 YLVVNKEA------------FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GGP--------- 191 (297)
Q Consensus 145 ~f~~~~~~------------~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~-----------~~p--------- 191 (297)
+...+... ...+|++++.+|..+.+.....+||+|+++++- +.. ..|
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 98654210 012479999999988774333479999999971 110 011
Q ss_pred ccCccc-----------HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHH-HHHHHHHhhCCceeEEEEe
Q 022451 192 CYKLYT-----------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKYVVPYSAH 251 (297)
Q Consensus 192 ~~~L~t-----------~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~-~i~~~l~~~F~~v~~~~~~ 251 (297)
...|.. +.+++. +.++|+|||.++++.+. .+.+.+. +++.. .-|..+..|...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lEiG~----~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFNMGG----RPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc----cHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 112222 445555 57899999999999762 2333333 23332 237777777643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=95.88 Aligned_cols=96 Identities=24% Similarity=0.427 Sum_probs=71.2
Q ss_pred EEEEccchhHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE-
Q 022451 106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG- 181 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~- 181 (297)
||++|||+|..++.+.+.. +..++++||+|+++++.+++++... ..+++++++|+.++ ....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999999864 3479999999999999999987643 25899999999774 445679999999
Q ss_pred cC-CCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
.. .... .+ ---..+++. +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 33 2211 11 112468888 799999998
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=118.95 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=89.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++ +...+++++.+|+.++++...++||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 35789999999999999999985 46689999999999999999998764 2235899999999999875567899999
Q ss_pred EcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++.-......... .-.++++. +.++|+|||++++.+++
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence 998732110000010 11345666 67899999999887643
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-11 Score=112.28 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.|++.....+ ..++++++.+|+.+. ...+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence 457899999999999999999865 5699999999999999998765332 135799999998663 23457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...... .+ -...++++ +.++|+|||.+++..
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 8644222 11 12478899 899999999998754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-11 Score=105.62 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHh-ccC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELE-SRK 173 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~-~~~ 173 (297)
.+...++.+||+.|.|+|+++..+++ ..|..+|...|+.++..+.|+++|...+ -..++++++.|..+ -.. ...
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~Dv~~~g~~~~~~ 111 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRDVCEEGFDEELE 111 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-GGCG--STT-T
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecceeccccccccc
Confidence 33457889999999999999999997 3567899999999999999999998653 24689999999853 221 224
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC-CCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
..+|.|++|+++||. .+.. +.+.| ++||+++... | .-++..+....|++. |..+..+.
T Consensus 112 ~~~DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P----~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--P----CIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp TSEEEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--S----SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcccEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--C----CHHHHHHHHHHHHHCCCeeeEEEE
Confidence 679999999999883 3445 68899 8999999884 4 456778888888874 77665553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-10 Score=98.49 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+ .+++++.+|....+. .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence 44579999999999999998876 34699999999999999999876442 358899999877543 46899999
Q ss_pred EcCCCC-CCCC------Cc--------cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADP-IEGG------PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~-~~~~------p~--------~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-. .... +. ....-..+++. +.+.|+|||.+++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLVQ 159 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 997521 1000 00 00012357777 789999999998753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=102.89 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=88.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..+. -..++.++.+|... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~---~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQ---PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEeccccc---ccCCCceEEE
Confidence 45689999999999999888875 45799999999999999999987653 13467777776322 2346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
++.... . -.+++.. +.+.|+|||.+++..- .......+...+++.|.-
T Consensus 231 an~~~~-------~--l~~ll~~-~~~~LkpgG~li~sgi------~~~~~~~v~~~~~~~f~~ 278 (288)
T TIGR00406 231 ANILAE-------V--IKELYPQ-FSRLVKPGGWLILSGI------LETQAQSVCDAYEQGFTV 278 (288)
T ss_pred EecCHH-------H--HHHHHHH-HHHHcCCCcEEEEEeC------cHhHHHHHHHHHHccCce
Confidence 986421 1 1367888 7999999999988631 223445666666665543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-11 Score=110.49 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||||||+|.++..+++. ..+|++||+++++++.|+++..... ...+++++.+|+.++- ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence 4568999999999999988864 4689999999999999998865331 1357999999987653 34578999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...-.....+ .+|++. ++++|+|||.+++.+
T Consensus 205 ~~vLeHv~d~------~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVANP------AEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcCCH------HHHHHH-HHHHcCCCcEEEEEE
Confidence 6432211122 378898 899999999998775
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=101.01 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=84.0
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
+...++.+||+||||+|..+..+++.. .+|+.||+++...+.|++++...+ -.+|.++++|+..-... ..+||
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD 140 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYD 140 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcC
Confidence 344678999999999999999999874 499999999999999999987553 35699999999877643 47899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.|++.+..+. .|. . +.+.|++||++++-.+
T Consensus 141 ~I~Vtaaa~~--vP~----------~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPE--VPE----------A-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCC--CCH----------H-HHHhcccCCEEEEEEc
Confidence 9999987554 341 1 4578999999998765
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-11 Score=105.19 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=79.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..++|||+|||+|.++..+++.. .+|+++|++++.++.|+.+-.... -.+++......+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence 367899999999999999999863 899999999999999999865432 2355777776665543 48999999
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+--- .+. ..| ..|++. |.+++||||++++.+
T Consensus 130 cmEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 130 CMEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred EhhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence 8643 221 122 258888 799999999999876
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=101.25 Aligned_cols=127 Identities=20% Similarity=0.333 Sum_probs=89.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hh-----cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LE-----SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~-----~~ 172 (297)
.++.+|||||||+|.++..+++.. +..+|++||+++. . ..++++++++|+... +. ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 567799999999999999998864 3469999999981 0 125689999998763 11 13
Q ss_pred CCCceEEEEcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
.++||+|++|....+...+.... .....++. +.+.|+|||.+++.. ...+.+..++..+++.|..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~------~~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV------FQGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE------ecCcCHHHHHHHHHhCceEEEE
Confidence 56899999997533211111000 12457788 799999999999863 2334567778889999998876
Q ss_pred EE
Q 022451 248 YS 249 (297)
Q Consensus 248 ~~ 249 (297)
+.
T Consensus 188 ~K 189 (209)
T PRK11188 188 RK 189 (209)
T ss_pred EC
Confidence 53
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=102.05 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=78.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+..+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+ ...+++++.+|+.+.+.. ..+||+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEE
Confidence 456799999999999998887753 24689999999999999999886442 124699999999775543 4689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++...+. +.+. +.+.|+|||.|++..
T Consensus 147 i~~~~~~~------------~~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAST------------IPSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcch------------hhHH-HHHhcCcCcEEEEEE
Confidence 99865321 1234 578899999998864
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=103.10 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
++..+|||||||+|..+..+++. .+..+++++|+++.|++.|++++.... ...+++++.+|+.++- ...+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 46679999999999999988875 356899999999999999999875321 2357999999987652 245899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-++ .+.. --..+++. +.+.|+|||.+++..
T Consensus 126 v~~~~~l~~--~~~~--~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQF--LPPE--DRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred Eeeecchhh--CCHH--HHHHHHHH-HHHhcCCCeEEEEee
Confidence 887654332 1100 12478899 899999999998874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-11 Score=103.38 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=79.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ -++++++.+|+.+.+.. ..+||+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~ 149 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWEP-LAPYDR 149 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCcc-cCCCCE
Confidence 35678999999999999998887643 4579999999999999999887542 25799999998765432 368999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+. + .+. +.+.|+|||++++..
T Consensus 150 Ii~~~~~~~-------~-----~~~-~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPK-------I-----PEA-LIDQLKEGGILVMPV 177 (215)
T ss_pred EEEcCCccc-------c-----cHH-HHHhcCcCcEEEEEE
Confidence 999864321 1 133 567899999998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-10 Score=99.06 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~~~~~~yD 177 (297)
..+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++.... .+++.++.+|+.... ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence 3567799999999999999999865456899999999999877665331 257899999986421 11135699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC-CCCcC--CchHHHHHHHHHHhh-CCcee
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AGIFS--HTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~-p~~~~--~~~~~~~i~~~l~~~-F~~v~ 246 (297)
+|++|..+|+ . ...+++. +++.|+|||.+++.... +-.+. ....++...+.+++. |..+.
T Consensus 144 ~i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 144 VIYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EEEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999876543 1 1245677 78999999999884210 00011 123344455667665 66543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=108.81 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=86.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+.....++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCE
Confidence 3556899999999999999988753 46799999999999999999886542 135999999998764322367999
Q ss_pred EEEcCCCCCC----CCCcc-------Cc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 179 IIGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++|++-... ..|.. .+ ...++++. +.+.|+|||.++..+++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcCC
Confidence 9999862110 01100 00 12467888 78999999999877653
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=98.11 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||.|+.+..+++.. +...|+++|+++.+++.+++++...+ -.+++++.+|++.+.. ..++||.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~ 143 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDA 143 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCE
Confidence 3456899999999999998887753 24589999999999999999987543 2469999999987643 2356999
Q ss_pred EEEcCCCCCC----CCCcc-------Cc-----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 179 IIGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
|++|++-... ..|.. .+ ...++++. +.+.|+|||+|+..+++- ..+.-+.+++.+-+.+
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCSL----EPEENEAVVDYLLEKR 218 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHHhC
Confidence 9999872211 11110 00 12457777 789999999998776542 3344456666666666
Q ss_pred Cce
Q 022451 243 KYV 245 (297)
Q Consensus 243 ~~v 245 (297)
+..
T Consensus 219 ~~~ 221 (264)
T TIGR00446 219 PDV 221 (264)
T ss_pred CCc
Confidence 653
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=102.23 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=79.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||+||||+|.++..+++.. +..+|+++|+++++++.|++++...+ -.+++++.+|+..... ...+||+
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~ 148 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDR 148 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCE
Confidence 3567899999999999998888753 34699999999999999999886442 2579999999876443 3468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+. ..+. +.+.|+|||.+++..
T Consensus 149 I~~~~~~~~------------~~~~-l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPD------------IPKP-LIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCccc------------chHH-HHHhhCCCcEEEEEE
Confidence 999864221 1234 567899999998864
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-12 Score=97.18 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=59.8
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLAD 185 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~ 185 (297)
|+||||+|.++..+++..+..+++++|+|+.+++.|++.+.... ..+......+..+.... ..++||+|++...-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999998788999999999999999988876432 12223333222222222 22589999987654
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
++. + .-.++++. +++.|+|||+|
T Consensus 77 ~~l--~----~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--E----DIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp S----S-----HHHHHHH-HTTT-TSS-EE
T ss_pred hhh--h----hHHHHHHH-HHHHcCCCCCC
Confidence 331 1 12478998 89999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=100.80 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=78.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.|++...... -.+++++..|..++- ..++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEE
Confidence 45689999999999999999985 4689999999999999998765432 245889999976542 245799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-++. .+ -....+++. +.+.|+|||.+++
T Consensus 101 ~~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 87543221 11 113478888 8999999998543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-10 Score=95.87 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.+.. -++|+++..|..++. +.++||+
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDL 109 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDL 109 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEE
T ss_pred CccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeE
Confidence 34566899999999999999999875 6899999999999999998753 278999999988775 4579999
Q ss_pred EEEcCCCCCCCCCccCcccH----HHHHHHHcccCCCCcEEEEecCCC---CCcCCchHHHHHHHHHHhhCCceeEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTK----SFYEFVVKPRLNPEGIFVTQAGPA---GIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~----ef~~~~~~~~L~pgGvl~~~~~~p---~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (297)
|++.-. ...|-.. .+.+. +.+.|+|||.|++-.-.. ..|.+....+.+...+.+.+-.+.-...
T Consensus 110 IV~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 110 IVLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EEEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred EEEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 998732 1222222 35666 679999999998764110 0134555678888899999888765543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=103.57 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=77.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||||||+|.++..+.+. ..+++++|+++.+++.|++... ...++.+|+... ...+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence 5689999999999999888774 4789999999999999998632 246788897653 234568999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..-.+... -.+++.. +.+.|+|||.+++.+
T Consensus 110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence 876444212 2377888 799999999998875
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-10 Score=96.54 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh--cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-----l~--~~ 172 (297)
.++.+|||||||+|.++..+++.. +..+|+++|+++.+ . .++++++.+|..+. +. ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 567899999999999998888753 45689999999864 1 14578888887542 11 12
Q ss_pred CCCceEEEEcCCCCCCCCCc-cCcc----cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
.++||+|++|...+....+. ..+. ...+++. +.+.|+|||.+++... ..+.+..++..+++.|..+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~------~~~~~~~~l~~l~~~~~~~~~ 168 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVF------QGEEIDEYLNELRKLFEKVKV 168 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------cCccHHHHHHHHHhhhceEEE
Confidence 45799999986422111110 0111 1467888 7999999999998642 223456777888888866554
Q ss_pred E
Q 022451 248 Y 248 (297)
Q Consensus 248 ~ 248 (297)
+
T Consensus 169 ~ 169 (188)
T TIGR00438 169 T 169 (188)
T ss_pred e
Confidence 4
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-11 Score=103.16 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=80.2
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
++||+||||+|..+..+++..+..+++++|+++.+++.|++++...+ -.++++++..|..... ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence 47999999999999999887666799999999999999999876432 2368999999974431 235799999754
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-.. .+ . ...+++. +++.|+|||.+++..
T Consensus 76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence 3221 11 1 2478999 899999999998764
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=103.54 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
...++||++-|=+|+.+..++.. +..+|+.||++..+++.|++++.+++ ++..+++++.+|++++++. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46789999999999999988874 57799999999999999999998875 3446899999999999864 3569999
Q ss_pred EEEcCCCCCCCCCccCcccH---HHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||+|+|.-.. +. ..+ .+ +.+.. +.+.|+|||.|++.++++
T Consensus 199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--T
T ss_pred EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCc
Confidence 9999984211 11 111 22 34555 569999999998887766
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=98.53 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=96.8
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEEEEc
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~Ii~D 182 (297)
-+|+||||.|..+.++++..|...+.+||+....+..|.+..... .-+|+.++.+||..++.. .++..|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999998878999999999999999988876543 247999999999988764 35789999999
Q ss_pred CCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 183 ~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
-+|||-... ...|.+.+|++. +.++|+|||.+.+.+. ....+..+...+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 999983221 247899999999 8999999999998863 455667777777764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-09 Score=104.43 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=85.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ .+++++.+|+...... ..++||.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCE
Confidence 456789999999999999999987554799999999999999999886542 2478999999764321 2467999
Q ss_pred EEEcCCCC-C---CCCCccC-cc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 022451 179 IIGDLADP-I---EGGPCYK-LY-----------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 179 Ii~D~~~~-~---~~~p~~~-L~-----------t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++|++-. . ...|... .. -.++++. +.+.|+|||.++..+++
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 374 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 99999732 1 0111100 01 1357777 78999999999988754
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=100.37 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=82.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++||+||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+.. ..+++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 44679999999999999999987777789999999999999988643 47889999987643 2356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++... ...+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 9865443211 2368888 799999999998864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=105.13 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=95.9
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|+.+..++... +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+-....++||
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCC
Confidence 34567899999999999998888753 45799999999999999999976442 24589999999875433346799
Q ss_pred EEEEcCCCCCCC----CCcc-------C---c--ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPIEG----GPCY-------K---L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~~~----~p~~-------~---L--~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.|++|++-...+ .|.. . + ...+.+.. +.+.|+|||+++..+++. ..+....+++.+-+.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~----~~eEne~vv~~fl~~ 384 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV----TKEENTEVVKRFVYE 384 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC----ChhhCHHHHHHHHHh
Confidence 999998732111 1100 0 0 12456777 689999999998887643 233344555544445
Q ss_pred CCce
Q 022451 242 FKYV 245 (297)
Q Consensus 242 F~~v 245 (297)
+|..
T Consensus 385 ~~~~ 388 (431)
T PRK14903 385 QKDA 388 (431)
T ss_pred CCCc
Confidence 5554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=102.65 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=80.5
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. .-.+++||+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~ 120 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDM 120 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEE
Confidence 34567899999999999998887754 46899999999999999987542 26799999997542 223468999
Q ss_pred EEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++. ...+. +.. -...+++. +.+.|+|||.+++..
T Consensus 121 V~s~~~l~h~---~~~--d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 121 IYSRDAILHL---SYA--DKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EEEhhhHHhC---CHH--HHHHHHHH-HHHHcCCCcEEEEEE
Confidence 9984 32221 100 12468888 799999999998864
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=101.71 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||||||+|..+..+++. .+..+|+++|+++.+++.|++++.... -++++++.+|+.+ +...++.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~-l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEA-LPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhh-CCCCCCceeEE
Confidence 56789999999999988776664 334589999999999999999865432 2588999999755 33335689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+++..-.. .+ -....++. +.+.|+|||.+++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98865322 11 12467888 79999999999875
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=91.16 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=101.3
Q ss_pred EEEEEeCCceeEE-EEcCccccccCChhhHHHHHHHHHHhc-CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHH
Q 022451 60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 60 i~V~~~~~~g~~L-~ldg~~q~~~~d~~~y~e~l~~~~l~~-~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
++|+.-+..||.| +.+|.- +.|..-.-.|.+... +.. .-...++||+-+|+|+++.+++.+ +..+++.||.|..
T Consensus 2 mRIi~G~~kgr~L~~p~~~~--~RPT~drVREalFNi-l~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~ 77 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGPG--TRPTTDRVREALFNI-LAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK 77 (187)
T ss_pred eEEEeccccCCcccCCCCCC--cCCCchHHHHHHHHh-ccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence 3455555556655 445421 111111234454421 222 256889999999999999999986 5789999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC--ceEEEEcCCCCCCCCCccCcc--cHHHHHHHHcccCCCCc
Q 022451 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 138 vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~--yD~Ii~D~~~~~~~~p~~~L~--t~ef~~~~~~~~L~pgG 213 (297)
+..+.+++....+ ...+.+++..|+..+|+....+ ||+|++|+|-.. .+. ...+....-...|+|+|
T Consensus 78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCc
Confidence 9999999987442 2478999999999998776555 999999997532 222 12222210257899999
Q ss_pred EEEEecC
Q 022451 214 IFVTQAG 220 (297)
Q Consensus 214 vl~~~~~ 220 (297)
.+++...
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999863
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=103.28 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=75.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||.|+++..+++.+ ..+|++|.++++..+.|++.+...+ -..++++...|.+++ +.+||.|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~I 131 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRI 131 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEE
Confidence 4678899999999999999999976 4799999999999999999876443 136899999997654 3489998
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++--. .+. ++ -.-..||+. +.+.|+|||.++++.
T Consensus 132 vSi~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 132 VSIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 87532 222 11 123589999 899999999999885
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=104.66 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+. ...+||+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCE
Confidence 3456899999999999988877643 34689999999999999999886442 146999999998765 3467999
Q ss_pred EEEcCCCCCC----CCCcc--Cc----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 179 IIGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 179 Ii~D~~~~~~----~~p~~--~L----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
|++|++-... ..|.. .+ ...+++.. +.+.|+|||+++..+++. ..+..+..++.+-+.+
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~----~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI----EPEENELQIEAFLQRH 396 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhHHHHHHHHHHhC
Confidence 9999862111 01100 01 12357888 789999999999988653 2233344444444444
Q ss_pred Cc
Q 022451 243 KY 244 (297)
Q Consensus 243 ~~ 244 (297)
+.
T Consensus 397 ~~ 398 (445)
T PRK14904 397 PE 398 (445)
T ss_pred CC
Confidence 44
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=104.20 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=90.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++++|||+|||+|.++..+++. +..+|+++|+||..++.|+++...++. ..++.+.. ..+. ...+||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~---~~~~~v~~--~~~~---~~~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV---EDRIEVSL--SEDL---VEGKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEESC--TSCT---CCS-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC---CeeEEEEE--eccc---ccccCCEE
Confidence 356789999999999999999987 578999999999999999999988752 23665531 1111 23889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCce
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTW 259 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~ 259 (297)
+.+.... -| .+.... +.++|+|||.|++..- -.+....+.+.+++-|.-+.. . ..+.|
T Consensus 230 vANI~~~-------vL--~~l~~~-~~~~l~~~G~lIlSGI------l~~~~~~v~~a~~~g~~~~~~-----~-~~~~W 287 (295)
T PF06325_consen 230 VANILAD-------VL--LELAPD-IASLLKPGGYLILSGI------LEEQEDEVIEAYKQGFELVEE-----R-EEGEW 287 (295)
T ss_dssp EEES-HH-------HH--HHHHHH-CHHHEEEEEEEEEEEE------EGGGHHHHHHHHHTTEEEEEE-----E-EETTE
T ss_pred EECCCHH-------HH--HHHHHH-HHHhhCCCCEEEEccc------cHHHHHHHHHHHHCCCEEEEE-----E-EECCE
Confidence 9997531 12 245666 6899999999998631 123445666777553332211 1 13457
Q ss_pred eEEEEec
Q 022451 260 GWIMVSI 266 (297)
Q Consensus 260 ~~~~as~ 266 (297)
.-+.+.|
T Consensus 288 ~~l~~~K 294 (295)
T PF06325_consen 288 VALVFKK 294 (295)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7666554
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=97.90 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||+|||+|.++..+++..+..+|++||+|+.+++.|++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 457999999999999988887654579999999999999999853 468999999998753 468999999
Q ss_pred cCCCCCC-CC--CccCcc-----------cHHHHHHHHcccCCCCcEEEEe
Q 022451 182 DLADPIE-GG--PCYKLY-----------TKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 D~~~~~~-~~--p~~~L~-----------t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+++-... .. ....-+ -.+|+.. +...|+|+|.+.+-
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEE
Confidence 9873221 00 000011 2467787 78999999966443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-09 Score=101.97 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=93.8
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh---ccCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKE 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~---~~~~ 174 (297)
...++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+..+.. ...+
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccc
Confidence 34567899999999999998888753 34699999999999999999886543 2469999999987642 1236
Q ss_pred CceEEEEcCCCCC----CCCCccC-c-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 175 SYDVIIGDLADPI----EGGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 175 ~yD~Ii~D~~~~~----~~~p~~~-L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
+||.|++|++-.. ...|... . ...++++. +.+.|+|||.|+..+++ ....+....+...+
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvystcs---i~~~Ene~~v~~~l 400 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYATCT---LHPAENEAQIEQFL 400 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC---CChhhHHHHHHHHH
Confidence 7999999987211 1111100 0 02567888 78999999999877653 22333333344444
Q ss_pred HhhCCc
Q 022451 239 RQVFKY 244 (297)
Q Consensus 239 ~~~F~~ 244 (297)
+ .+|+
T Consensus 401 ~-~~~~ 405 (434)
T PRK14901 401 A-RHPD 405 (434)
T ss_pred H-hCCC
Confidence 4 4454
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=96.56 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++.....+ -++++...|...+ . ..++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~-~-~~~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA-A-LNEDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc-c-ccCCCCEEE
Confidence 35789999999999999999985 3689999999999999988765332 2367777776432 1 235799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-.. .+. -....+++. +++.|+|||.+++
T Consensus 100 ~~~~~~~--~~~--~~~~~~l~~-~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMF--LQA--GRVPEIIAN-MQAHTRPGGYNLI 131 (195)
T ss_pred Eeccccc--CCH--HHHHHHHHH-HHHHhCCCcEEEE
Confidence 8654221 110 112478888 7999999998543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-09 Score=89.25 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++||++|||+|.++..+++. ..+|+++|+++.+++.+++++.... +.+.+++++.+|..+.+. .++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence 46678999999999999999986 4799999999999999999876542 122238899999866543 34799999
Q ss_pred EcCCCCCCCCCc----------------cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPC----------------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~----------------~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-... .+. .......+++. +.+.|+|||.+++..
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEE
Confidence 98752110 000 00112457888 789999999888765
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-10 Score=96.03 Aligned_cols=109 Identities=19% Similarity=0.299 Sum_probs=80.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
-.+.+||||.+|+|.++.+++.+ +..+|+.||.|+..++..++++...+ ...+++++..|+..++.. ...+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence 46889999999999999999986 57899999999999999999987442 124799999999988855 368999
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
+|++|+|-.. .++-.+.++. +. ..|+++|++++...
T Consensus 117 iIflDPPY~~------~~~~~~~l~~-l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAK------GLYYEELLEL-LAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTS------CHHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCccc------chHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence 9999986322 1112345555 33 89999999999863
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=96.02 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=96.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
..+..+||+||||+|.++..++... +..+|++||+++++.+...+... ..+++..+.+|++.- .....+.+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCC
Confidence 3566799999999999999999864 34689999999976533332211 125789999998642 12123579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCC---chHHHHHHHHHHhh-CCceeEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH---TEVFSCIYNTLRQV-FKYVVPYSAHI 252 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~---~~~~~~i~~~l~~~-F~~v~~~~~~v 252 (297)
|+|++|...|+ . ...+... +++.|+|||.|++.+........ .+.++.-++.|++. |..+... .+
T Consensus 204 DvV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v--~L 272 (293)
T PTZ00146 204 DVIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL--TL 272 (293)
T ss_pred CEEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE--ec
Confidence 99999986433 1 1234445 68899999999885422211111 22233334778776 8765433 45
Q ss_pred CccCCceeEEEEecCC
Q 022451 253 PSFADTWGWIMVSIYN 268 (297)
Q Consensus 253 p~~~~~~~~~~as~~~ 268 (297)
+.|......+++..+.
T Consensus 273 ~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 273 EPFERDHAVVIGVYRP 288 (293)
T ss_pred CCccCCcEEEEEEEcC
Confidence 5565445556655444
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.7e-10 Score=98.32 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||+||+|+|..+..++.. .+..+|++||+++.+++.|++++...+ ..+++++.+|+..-+.. ..+||.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~ 144 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDR 144 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCE
Confidence 467789999999999999888875 335689999999999999999987542 35899999999876644 468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++....+. .| .. +.+.|++||+|++-..
T Consensus 145 I~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 145 IIVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred EEEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence 999875432 22 12 3567999999998653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-09 Score=89.73 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---CCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~~~yD~ 178 (297)
..++|||++||+|.++.+++.+. ..+|++||+|+.+++.+++++...+. ..+++++.+|+..++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEehhHHHHHHHhhccCCCceE
Confidence 56899999999999999999874 56899999999999999999876531 247999999998887532 234899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~ 219 (297)
|+.|++-.. .+ ..+.++.+. ...|+++|++++..
T Consensus 125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999987422 11 223444411 35799999999874
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=99.92 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=85.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||.|+++..+++.+ ..+|++|++|+...+.+++.+...+ + ..+++++..|-+++ .++||-
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l-~~~v~v~l~d~rd~----~e~fDr 140 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--L-EDNVEVRLQDYRDF----EEPFDR 140 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--C-CcccEEEecccccc----ccccce
Confidence 34788999999999999999999987 5799999999999999999876443 1 25899999997665 355999
Q ss_pred EEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++- .+.+. ++ -.-..||+. +++.|+|||.+++++
T Consensus 141 IvSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 8874 33433 22 123589999 899999999999886
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-10 Score=103.10 Aligned_cols=132 Identities=14% Similarity=0.035 Sum_probs=91.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||||||+|.++..+++..+..+++++|+++.+++.|++... .++++++.+|+.+. ....+.||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEE
Confidence 34679999999999999888876556799999999999999998753 24688999998753 33356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec-CCCCCcC---------CchHHHHHHHHHHhh-CCceeE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPAGIFS---------HTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~-~~p~~~~---------~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+...-.. .+ -....+++ +.+.|+|||.+++.. ..|..+. ......++.+.+++. |..+..
T Consensus 184 s~~~L~~--~~----d~~~~L~e-~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEY--WP----DPQRGIKE-AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhh--CC----CHHHHHHH-HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 8654221 11 11357888 899999999987642 1121110 011235566677766 776553
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=95.76 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.+|||+|||+|.++..+++.. +..+|++||+|+.+++.|++++ ++++++.+|+..+. ...+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 46799999999999999887642 3468999999999999999763 45889999987543 2468999
Q ss_pred EEEcCCCC-CCC----C-CccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADP-IEG----G-PCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~-~~~----~-p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
||+++|-. ... . ....+....+++. +.+.+++|+ +++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~-~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGT-FII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCE-EEe
Confidence 99999832 110 0 0112445567777 566555555 443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=95.17 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=81.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||++|||+|.++..+++.. +..+++++|+++.+++.|++.... ..++++++.+|+...- ...++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceE
Confidence 3567899999999999999998865 567999999999999999987322 2367899999976532 23468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-..... ...+++. +.+.|+|||.+++..
T Consensus 91 v~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD 124 (241)
T ss_pred EEEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence 998754222111 2468888 799999999988653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-09 Score=100.16 Aligned_cols=138 Identities=21% Similarity=0.177 Sum_probs=92.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD 177 (297)
...++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ +. .++.+..+|+..... ...++||
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccC
Confidence 3456789999999999999999886556799999999999999999886543 11 234446677653221 1246799
Q ss_pred EEEEcCCCCCC----CCCccC-c-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~~----~~p~~~-L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.|++|++-... ..|... . ...+++.. +.+.|+|||.|+..+++- ..+.-..+++.+-+.
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~----~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV----LPEENSEQIKAFLQE 386 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhCHHHHHHHHHh
Confidence 99999862111 112100 0 12468888 789999999999887642 223334445555455
Q ss_pred CCc
Q 022451 242 FKY 244 (297)
Q Consensus 242 F~~ 244 (297)
++.
T Consensus 387 ~~~ 389 (426)
T TIGR00563 387 HPD 389 (426)
T ss_pred CCC
Confidence 554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=107.57 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|+++.... ..+++++.+|+.... -.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~~-~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKKT-YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccCC-CCCCCEEEEE
Confidence 456799999999999999888765 568999999999999999875321 357999999976532 2346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+... ...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence 8644222111 2378888 899999999998764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=95.71 Aligned_cols=107 Identities=19% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+||++|||+|..+..+++..+ ..+++++|+++.+++.+++++.... .+++++++.+|+.... ...+.||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEE
Confidence 4568999999999999999988654 5899999999999999999875421 2367899999987643 234689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-... + . ...+++. +.+.|+|||.+++.
T Consensus 126 ~~~~~l~~~--~--~--~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNV--P--D--IDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccC--C--C--HHHHHHH-HHHhccCCcEEEEE
Confidence 876442221 1 1 2477888 79999999988764
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=97.49 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|.++|+||..++.|+++...++.. +.++.-..+..... ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~---~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVE---LLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCc---hhhhcccccchhhc--ccCcccEEE
Confidence 58899999999999999999997 5789999999999999999998877421 12222222222222 236899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYV 245 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v 245 (297)
.+.-. .| + ..+... ++++|+|||.+++..- -.+....+...+.+ -|.-+
T Consensus 235 ANILA----~v---l--~~La~~-~~~~lkpgg~lIlSGI------l~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 235 ANILA----EV---L--VELAPD-IKRLLKPGGRLILSGI------LEDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred ehhhH----HH---H--HHHHHH-HHHHcCCCceEEEEee------hHhHHHHHHHHHHhCCCeEe
Confidence 99752 12 1 256677 7899999999998642 12335666677744 46544
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=101.80 Aligned_cols=112 Identities=21% Similarity=0.055 Sum_probs=83.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||+|||+|+++.++... ..+++++|+|+.+++.|++++...+ .++++++.+|+.+. ....+.||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEE
Confidence 355678999999999999887764 4789999999999999999886542 23488999998763 3335789999
Q ss_pred EEcCCCCCCCCCccC---cccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~---L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|+|-......... -...++++. +++.|+|||.+++..
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 999873221111111 113578888 799999999998775
|
This family is found exclusively in the Archaea. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-10 Score=102.35 Aligned_cols=102 Identities=19% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC---CeEEEEcchHHHHhccCCCceEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~---rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
+++|||+|||+|.++..|++.. ++|+++|+++++++.|+++.... -.++.+ |+++...|+.. ..++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence 3789999999999999999974 79999999999999999994322 111222 46666677543 34569999
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.-. .+. ..| .+|.+. +.++|+|+|.+.+.+
T Consensus 163 vcsevleHV-~dp------~~~l~~-l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHV-KDP------QEFLNC-LSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHH-hCH------HHHHHH-HHHHhCCCCceEeee
Confidence 88643 222 123 378887 799999999998875
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=100.17 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|..+..+++. ..+|+++|+++.+++.+++.....+ -++++...|....- .+++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence 45679999999999999999885 3689999999999999998865432 36888888875532 257899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...-.. .+. . .-..+++. ++++|+|||++++
T Consensus 190 ~~~vl~~--l~~-~-~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMF--LNR-E-RIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred Ecchhhh--CCH-H-HHHHHHHH-HHHhcCCCcEEEE
Confidence 8754221 110 1 12368888 7999999998654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=94.06 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=81.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||++|||+|..+..+++..+. .+++++|+++.+++.+++++.. .++++++.+|+.+.. ...++||+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~------~~~i~~~~~d~~~~~-~~~~~~D~ 109 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL------PLNIEFIQADAEALP-FEDNSFDA 109 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc------CCCceEEecchhcCC-CCCCcEEE
Confidence 346789999999999999998886554 6899999999999999988651 367899999987643 23468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...... .+ . ...+++. +++.|+|||.+++..
T Consensus 110 i~~~~~~~~--~~--~--~~~~l~~-~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRN--VT--D--IQKALRE-MYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCC--cc--c--HHHHHHH-HHHHcCCCcEEEEEE
Confidence 988654221 11 1 2468888 799999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-09 Score=99.50 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=76.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|..+..+++.. ..+|+++|+++.++..++..-.... .+++++++.+|+.+. .. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence 457899999999999999998864 4579999999998865432211111 136899999997654 33 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..-.....| ..+++. +++.|+|||.+++.+
T Consensus 195 s~~vl~H~~dp------~~~L~~-l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYHRRSP------LDHLKQ-LKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhccCCH------HHHHHH-HHHhcCCCcEEEEEE
Confidence 85432211122 368888 899999999998763
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=93.15 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=94.6
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEEEE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~ 181 (297)
.-+|+||||.|.....+++..|...+.+||+...++..|.+.....+ -+|++++..||.+.+... ++..|-|++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 57999999999999999988888999999999999999988766442 248999999999988763 348999999
Q ss_pred cCCCCCCCCCc--cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-+|||.-... ..|...+|++. +.+.|+|||.|.+.+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 99999943222 46899999999 899999999999886
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=79.46 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=78.7
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+++++|||.|..+..+++ .+..+++++|+++..++.+++..... ...+++++.+|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999988 45789999999999999998532221 2367899999998876434568999999876
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.... .-....+++. +.+.|+|+|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 3220 1123467787 78999999999764
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-09 Score=93.20 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+..+||++|||+|..+..+.+.. .+++++|+++.+++.|++++...+ -.+++++.+|+.+.+. ..++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEE
Confidence 3567899999999999998777653 489999999999999999887442 2459999999865433 23689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+++...+ . +.+. +.+.|+|||.+++...
T Consensus 149 ~~~~~~~-------~-----~~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAP-------E-----IPRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCch-------h-----hhHH-HHHhcCCCcEEEEEEc
Confidence 9986421 1 1234 5689999999988753
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=93.10 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+||++|||+|..+..+.+..+..++++||+++.+++.|++++ ++++++.+|+.+. ..+++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence 35678999999999999999988656689999999999999999853 4577888997762 245789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L 209 (297)
++...-... .| .. -.++++. +.+.+
T Consensus 110 ~~~~vL~hl-~p-~~--~~~~l~e-l~r~~ 134 (204)
T TIGR03587 110 LTKGVLIHI-NP-DN--LPTAYRE-LYRCS 134 (204)
T ss_pred EECChhhhC-CH-HH--HHHHHHH-HHhhc
Confidence 987652210 12 11 2367777 67776
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-09 Score=88.56 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+||+||||+|.++.++++. ..++++||+|+.+++.+++++.. .++++++.+|+.++.. .+.+||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEE
Confidence 45678999999999999999986 47899999999999999988742 3689999999987642 234699999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
++++-.. +.+.+..++.. .+.++|+++++.
T Consensus 83 ~n~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 83 GNLPYNI---------STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ECCCccc---------HHHHHHHHHhcCCCcceEEEEEEH
Confidence 9975321 12333332332 355899999885
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=106.09 Aligned_cols=112 Identities=20% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~Ii 180 (297)
.+.+|||||||+|..+..+++..+..+++++|+++.|++.|++..... ..+++++.+|+.+.-. -.+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 578999999999999988887667889999999999999999875432 2568899999876321 2356899999
Q ss_pred EcCCCCCC--CCCc-----cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIE--GGPC-----YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~--~~p~-----~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++- ..|. ..-.-..+++. +.++|+|||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 87542210 0000 00122478888 799999999999875
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.6e-09 Score=96.28 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||+|||+|.++..+++. ..+|++||+++.+++.|+++...++ -++++++.+|+.+++....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4689999999999999999984 4799999999999999999886553 257999999999887544457999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|++.. + ...+..+. + ..++|++++.+.+++
T Consensus 247 dPPr~---G-----~~~~~~~~-l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 247 NPPRR---G-----IGKELCDY-L-SQMAPRFILYSSCNA 276 (315)
T ss_pred CCCCC---C-----ccHHHHHH-H-HHcCCCeEEEEECCc
Confidence 97621 1 12344444 3 447888888877654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=100.79 Aligned_cols=101 Identities=23% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++... ...+++...|.+.. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 567899999999999999998865 4689999999999999998753 12488888997653 46899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+... .+. +. -.-..+++. +.+.|+|||.+++..
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7543 211 11 112478898 899999999998874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=97.15 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCC---cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTV---EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~---~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
....+|||+|||+|.++..+.+..+. .+++++|+++.+++.|++.. +++++..+|+.+. .-.++.||
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCcee
Confidence 34578999999999999988865332 37999999999999998752 5688999997653 33457899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++... | .++++ +++.|+|||.+++..
T Consensus 154 ~I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA------P-------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence 9997431 2 22456 689999999998764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-09 Score=92.92 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=81.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
...-++||++||+|-++-.++++.+. .+|+++||||.|+..+++.-.. .....++++.++.+||.+ |.-.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~-LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAED-LPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCccc-CCCCCC
Confidence 45689999999999999999987655 7999999999999999987522 112245789999999876 445678
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
.||...+.----.-..+ ...+++ +.|+|||||++..
T Consensus 177 s~D~yTiafGIRN~th~------~k~l~E-AYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHI------QKALRE-AYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCCCH------HHHHHH-HHHhcCCCcEEEE
Confidence 89988775431110111 256777 7999999998864
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-09 Score=97.08 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+..+||+||||+|.++..+++..+ ..+|++||+++.+++.|++.+...+ .++++++.+|+.+.+.. ...||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence 4568999999999999999888653 2479999999999999999876442 25799999998776543 3579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++...+ +.... +.+.|+|||.+++..
T Consensus 154 i~~~g~~------------~ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD------------EVPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH------------HhHHH-HHHhcCCCCEEEEEe
Confidence 9985321 11223 467899999988764
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=92.48 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+||+||||+|.++..+.+. ..+++++|+++.+++.|++++.... .+++++..|...+.....++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEE
Confidence 35789999999999999988875 3689999999999999998876432 3578888998877644557899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-..... ..++++. +.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 8643221111 2367888 799999999998764
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=97.57 Aligned_cols=103 Identities=10% Similarity=0.142 Sum_probs=81.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+++|||+|||+|.++..++.. ..+|++||+|+.+++.|+++...++ -++++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 4579999999999999999864 4789999999999999999987653 247999999999887543356999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+|-. + ...++.+. +. .++|++++.+.+.
T Consensus 307 DPPr~---G-----~~~~~l~~-l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 NPPRR---G-----IGKELCDY-LS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC---C-----CcHHHHHH-HH-hcCCCeEEEEEeC
Confidence 98731 1 23466676 43 5899999888753
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.8e-09 Score=95.98 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..++... ..+|++||+++.++..++..-.... .++++.+...|..+. .. ...||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~l-p~-~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQL-HE-LYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHC-CC-CCCcCEEE
Confidence 457899999999999998888764 4589999999999865432111111 236788888886553 22 35799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.+...| .++++. +++.|+|||.|++.+
T Consensus 194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence 87542221122 368888 899999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.1e-09 Score=92.02 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=79.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----------------------------- 152 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~----------------------------- 152 (297)
.++.+|||||-.|.++..++++++...|.+||||+..+..|++++......
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 578999999999999999999988899999999999999999987543110
Q ss_pred ---------CCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 153 ---------FSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 153 ---------~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...|..+-.. +||.....+||+|++-.-.-|.+-. ...| ..||+. +.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHH-HHHhhCcCcEEEEc
Confidence 00011111112 3454456789999886654332110 0123 479999 89999999999997
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.2e-09 Score=96.33 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|||||||+|.++..+++..|..+++++|+ |.+++.++++....+ -.+|++++.+|+.+. .-..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCCCCCEEE
Confidence 4568999999999999999999878889999998 899999998876432 246899999997642 123479987
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.-.-+.. .+ -....+++. +.+.|+|||.+++..
T Consensus 221 ~~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 221 FCRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLILD 254 (306)
T ss_pred eEhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 65432110 11 112357888 799999999998774
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=90.60 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+||++|||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++..+|+.++.....++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999999999888753 469999999999999998876432 12688999998887654457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-..... ...+++. +.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 8643221111 2367888 799999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=98.24 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=82.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
..+|||++||+|..+..++...+..+|+++|+|+..++.+++++..++ -.+++++.+|+..++.. .++||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence 358999999999999998775556799999999999999999987764 24578999999998864 4679999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++. .+ .+|+.. +.+.++++|++.+..
T Consensus 133 P~G----s~------~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PFG----SP------APFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred CCC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence 862 22 267776 567899999998774
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=90.04 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~-~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....||++|||+|..-...-- .|..+||++|.+|.|.+.|.+.+... ..+++. ++++|+++..+-.+.+||.|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence 345789999999998776332 37889999999999999999887644 246776 999999887655678999998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-.---....| .+.+++ +++.|+|||++++..
T Consensus 151 ~TlvLCSve~~------~k~L~e-~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 151 CTLVLCSVEDP------VKQLNE-VRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEeccCCH------HHHHHH-HHHhcCCCcEEEEEe
Confidence 87542111122 367788 799999999998764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=89.76 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+.+.. ..+|+++|++++|++.|++. ...+++|+.. +.-.+++||+|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~-lp~~d~sfD~v~ 115 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEA-LPFRDKSFDVVM 115 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhh-CCCCCCCEEEEE
Confidence 347899999999999999998864 46899999999999999863 1246788765 344568899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
+...-.+... -...+++ ++++|+|.+
T Consensus 116 ~~~~l~~~~d------~~~~l~e-~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASDN------IEKVIAE-FTRVSRKQV 141 (226)
T ss_pred ecChhhccCC------HHHHHHH-HHHHhcCce
Confidence 9764322111 2368888 799999953
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-08 Score=94.70 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.+..+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..++ -.+++++.+|+.+++.. .+.+||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCC
Confidence 456799999999999999998863 689999999999999999886553 24699999999887642 235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++|++-. + + .+.++. +. .++|++++.+.+++
T Consensus 370 ~Vi~dPPr~---g----~--~~~~~~-l~-~~~~~~ivyvSCnp 402 (443)
T PRK13168 370 KVLLDPPRA---G----A--AEVMQA-LA-KLGPKRIVYVSCNP 402 (443)
T ss_pred EEEECcCCc---C----h--HHHHHH-HH-hcCCCeEEEEEeCh
Confidence 999998632 1 1 144555 44 47999998887643
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.9e-09 Score=90.31 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
+++.+||++|||.|..+..++++ ..+|++||+++.+++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 46679999999999999999986 4689999999999998644221110 0012357999999987653222
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.++||.|+-...-.. -| .. ....+++. +.+.|+|||.+++.
T Consensus 111 ~~~fD~i~D~~~~~~--l~-~~-~R~~~~~~-l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIA--LP-EE-MRQRYAAH-LLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhcc--CC-HH-HHHHHHHH-HHHHcCCCCeEEEE
Confidence 357998875433111 11 11 23458888 89999999965444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=91.95 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=76.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC----C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~----~ 175 (297)
+++.+||++|||+|..+..+++..+ ..++++||++++|++.|++.+.... ..-+++.+++|..+.+..... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCC
Confidence 4568899999999999999998643 4789999999999999998765321 123466789998765432211 2
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+++++..-.. -+ .--...+++. ++++|+|||.+++-..
T Consensus 139 ~~~~~~gs~~~~--~~--~~e~~~~L~~-i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 139 RLGFFPGSTIGN--FT--PEEAVAFLRR-IRQLLGPGGGLLIGVD 178 (301)
T ss_pred eEEEEecccccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEecc
Confidence 334444443221 11 1112468999 8999999999987653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.3e-08 Score=95.04 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
....+|||+|||+|.++..+++. ..+|++||+++.+++.|++++..++ -.+++++.+|+.+++.. ....||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 45579999999999999999875 4689999999999999999987553 25899999999887653 235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|++.. + ...++++. +. .|+|++++.+.+
T Consensus 365 ~vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 365 VLLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence 999998631 1 13467776 44 589999877654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=84.21 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE----EcchHHHHhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~----~~Da~~~l~~~~~~ 175 (297)
+..+..+|++|||+|+++..++...+..+|++||.++.++.+|.++..... -..++.++ .+|+..-.....++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence 445668999999999999999987778999999999999999999875332 13577777 45544433334588
Q ss_pred ceEEEEcCCC-CCCC-----------CCccCc--------ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 176 YDVIIGDLAD-PIEG-----------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 176 yD~Ii~D~~~-~~~~-----------~p~~~L--------~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|+|+++++- +..+ .|...| .-.-++.. +.++|+|||.+.++..
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence 9999999871 1110 111111 11235565 6799999999999875
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=99.55 Aligned_cols=106 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.+.++|||||||+|.++..+++. ..+|++||+++.+++.+++.... .++++++.+|+... +...+++||+|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEE
Confidence 34679999999999999999986 36899999999999988763221 36799999998642 22345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+. . .-.++++. +++.|+|||++++..
T Consensus 108 ~~~~~l~~--l~~-~-~~~~~l~~-~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMY--LSD-K-EVENLAER-MVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHh--CCH-H-HHHHHHHH-HHHhcCCCeEEEEEe
Confidence 99865322 110 0 02478888 799999999998753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-08 Score=83.80 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=76.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..+.|+|+|||+|.++..++.. +..+|++||+||+.+++++++.... ..+++++++|+..+ ..++|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence 46788999999999999888875 5689999999999999999987642 36899999997665 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+|-... ..+ .+++|+.. +.+.- +.+..+.
T Consensus 114 mNPPFG~~---~rh-aDr~Fl~~-Ale~s--~vVYsiH 144 (198)
T COG2263 114 MNPPFGSQ---RRH-ADRPFLLK-ALEIS--DVVYSIH 144 (198)
T ss_pred ECCCCccc---ccc-CCHHHHHH-HHHhh--heEEEee
Confidence 99874321 112 56788776 44433 4555554
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=94.61 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=85.3
Q ss_pred CeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
.+|||+.+|+|..+.+++... +..+|+++|+||..++.++++...++ -.+++++.+|+..++....++||+|++|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 589999999999999998863 56899999999999999999988763 2468999999999997766789999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++. .|. +|++. +.+.++++|+|.+..
T Consensus 122 PfG----s~~------~fld~-al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PFG----TPA------PFVDS-AIQASAERGLLLVTA 147 (374)
T ss_pred CCC----CcH------HHHHH-HHHhcccCCEEEEEe
Confidence 862 232 68888 788999999998873
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=87.42 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|.++..+++. ..+|+++|+|+.+++.|++.+.... ...++++..+|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence 45789999999999999999875 4589999999999999999876432 124799999997653 26899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+-.. ... +... -...++. +.+.+++++++..
T Consensus 125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence 7432 221 1111 1356777 6777887766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=87.60 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.++||||||.|..+.++++. .-.|+++|+++..++.+++..... +-.++....|..++- .+++||+|
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I 98 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFI 98 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEE
Confidence 346899999999999999999986 468999999999999887754432 134888999965542 24689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...... -+ ..+ -...++. +++.++|||++++.+
T Consensus 99 ~st~v~~f--L~-~~~-~~~i~~~-m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMF--LQ-REL-RPQIIEN-MKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGG--S--GGG-HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEEEEecc--CC-HHH-HHHHHHH-HHhhcCCcEEEEEEE
Confidence 97643211 11 122 2467888 899999999988753
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=84.73 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++++||+||||.|.++..+.+.. .+++++|+++.+++. .+ +.....+... ....+++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence 4678999999999999999997753 499999999999988 11 1111111111 22346789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.+ .+ .-..+++. +.++|+|||++++..
T Consensus 83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 99854322 11 13478888 899999999999876
|
... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-07 Score=87.19 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc----------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------- 172 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---------- 172 (297)
+.+|||++||+|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999988875 4689999999999999999987653 248999999999987531
Q ss_pred -----CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 173 -----~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+||+|++|+|-. + ...+.++. +.+ +++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~---G-----~~~~~l~~-l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRA---G-----LDDETLKL-VQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCC---C-----CcHHHHHH-HHc---cCCEEEEEeC
Confidence 12599999998731 2 23456565 443 7888887753
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-07 Score=85.96 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---------C
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K 173 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---------~ 173 (297)
+.+|||+|||+|.++..+.+.. .+|++||+++.+++.|++++..++ -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 4579999999999999888753 589999999999999999987653 247999999999988631 1
Q ss_pred ------CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 174 ------~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+||+|++|+|.. +. ..+.++. +. +|++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~---G~-----~~~~l~~-l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRA---GL-----DPDTCKL-VQ---AYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCC---CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence 2489999998731 21 3355565 43 37888888754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-07 Score=80.45 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=102.2
Q ss_pred CCCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCC
Q 022451 101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~ 174 (297)
-.++++|+||.=+|..+...+ ..++..+|+++|+|+...+.+.+.....+ -+..++++++++.+-|.+ ..+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence 478999999999998875555 45778899999999999999987765443 357899999999887754 257
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec----C---CCCCcCCchHHHHHH---HHHHhhCCc
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----G---PAGIFSHTEVFSCIY---NTLRQVFKY 244 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~----~---~p~~~~~~~~~~~i~---~~l~~~F~~ 244 (297)
.||++|+|+.- ..|. .+|.. +-+.|++||+|++.- + .|.. .....-..+. +.-.+....
T Consensus 149 tfDfaFvDadK--------~nY~-~y~e~-~l~Llr~GGvi~~DNvl~~G~v~~p~~-~~~~~~~~~r~~~~~n~~l~~D 217 (237)
T KOG1663|consen 149 TFDFAFVDADK--------DNYS-NYYER-LLRLLRVGGVIVVDNVLWPGVVADPDV-NTPVRGRSIREALNLNKKLARD 217 (237)
T ss_pred ceeEEEEccch--------HHHH-HHHHH-HHhhcccccEEEEeccccCCcccCccc-CCCcchhhhhhhhhhhhHhccC
Confidence 89999999641 2333 78888 679999999998762 2 2211 1111222222 444445555
Q ss_pred eeEEEEecCccCCceeEEEEec
Q 022451 245 VVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 245 v~~~~~~vp~~~~~~~~~~as~ 266 (297)
.+.+...+|...+ ..+|.+
T Consensus 218 ~rV~~s~~~igdG---~~i~~k 236 (237)
T KOG1663|consen 218 PRVYISLLPIGDG---ITICRK 236 (237)
T ss_pred cceeeEeeeccCc---eeeecc
Confidence 6666666665433 455543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-08 Score=81.59 Aligned_cols=114 Identities=19% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+||+||||.|.++..|++..=...+++||.++..+++|+.-....+ .++.+++.+.|..+- ....++||+|+
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEe
Confidence 34459999999999999999985323459999999999999876544332 123489999997542 22345677764
Q ss_pred EcCC-CCCC---CCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~-~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
---+ +... ..+...+ .-++.. +.+.|+|||++++..+.
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEecC
Confidence 3211 1110 0221222 134455 78999999999998653
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=87.76 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=75.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
++..+||++|||.|..+..++++ ..+|++||+++..++.+.+.-.... ......+++++++|..++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999985 4689999999999997643211110 0123468999999988764332
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...||+|+--..-.. -| .. ....+++. +.+.|+|||++.
T Consensus 114 ~~~fd~v~D~~~~~~--l~-~~-~R~~~~~~-l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALIA--LP-EE-MRERYVQQ-LAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHhh--CC-HH-HHHHHHHH-HHHHcCCCCeEE
Confidence 357899885432111 11 11 23478888 899999998533
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=91.47 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=73.5
Q ss_pred CCCeEEEEccchhH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhhh-hc--cCC-----------C-----
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-VN--KEA-----------F----- 153 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~f~-~~--~~~-----------~----- 153 (297)
.+.+|+++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..- .. ... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555554322 4689999999999999998431 00 000 0
Q ss_pred ----CCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 154 ----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 154 ----~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-..+|++...|..+.- ...++||+|++.-.-.. -+ .-.....++. +.++|+|||+|++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~y--f~--~~~~~~~l~~-l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIY--FD--EPTQRKLLNR-FAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHh--CC--HHHHHHHHHH-HHHHhCCCeEEEEEC
Confidence 0136888888876532 13568999998532111 00 0012368888 899999999999863
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=87.02 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.++.+|||||||+|.++..+++. .+..+|+++|+++.+++.|++.... +++++...|+... ...+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence 46789999999999998887753 2345899999999999999986432 3466666655332 2245789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++...-+. .+... ..++++. +.+.++ |.++++.
T Consensus 131 D~V~~~~~lhh--~~d~~--~~~~l~~-~~r~~~--~~~~i~d 166 (232)
T PRK06202 131 DVVTSNHFLHH--LDDAE--VVRLLAD-SAALAR--RLVLHND 166 (232)
T ss_pred cEEEECCeeec--CChHH--HHHHHHH-HHHhcC--eeEEEec
Confidence 99999865322 11111 2368888 788887 4555553
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=82.41 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=69.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+++++|+++.+++.|++++.... ...+++++.+|. . ...+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-E---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-h---hccCCcCEEE
Confidence 456899999999999999998763 469999999999999999876432 125789999993 2 2346799998
Q ss_pred EcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
+...- +. +... ....++. +.+.+++++++
T Consensus 133 ~~~~l~~~---~~~~--~~~~l~~-l~~~~~~~~~i 162 (230)
T PRK07580 133 CLDVLIHY---PQED--AARMLAH-LASLTRGSLIF 162 (230)
T ss_pred EcchhhcC---CHHH--HHHHHHH-HHhhcCCeEEE
Confidence 75432 21 1111 1345566 55655544443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=86.56 Aligned_cols=100 Identities=25% Similarity=0.398 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+...|+|+.||-|.++..++++.+...|.++|+||..++..+++...++. ..++.++.+|+++++. ...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv---~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV---ENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC---CCeEEEEcCCHHHhcC--ccccCEEE
Confidence 568899999999999999999876778999999999999999999988752 3689999999999987 67899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
++++.. +.+|+.. +.+++++||++.
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 998631 2267777 788999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-08 Score=86.21 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=78.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
++.-+.++|+|||+|..++-++.++ ++|+++|+++.|+++|+++++..- .+-..++...|...++. .+++.|+|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI 104 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLI 104 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeee
Confidence 3444589999999998888888885 689999999999999999875321 12233445555555543 36789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCc-EEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-vl~~~~~ 220 (297)
++.-.-+|.. -.+||+. +++.|+++| +++++..
T Consensus 105 ~~Aqa~HWFd-------le~fy~~-~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 105 TAAQAVHWFD-------LERFYKE-AYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhhhhHHhhc-------hHHHHHH-HHHHcCCCCCEEEEEEc
Confidence 9876555522 2479999 899999977 8887753
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-07 Score=86.96 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||+|+|.|+=+.+++... +...|+++|+++.-++..++++...+ -.++.+...|++.+.......||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence 567899999999999888888753 34689999999999999999886542 3568999999987654445679999
Q ss_pred EEcCCCCCC----CCCcc-Cc-----------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 180 IGDLADPIE----GGPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 180 i~D~~~~~~----~~p~~-~L-----------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
++|++-... ..|.. .- ..++++.. +.+.|+|||+|+-.+++ ...+.-+.++..+-+.++
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT----~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT----LNREENQAVCLWLKETYP 262 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC----CCHHHHHHHHHHHHHHCC
Confidence 999983211 11100 01 12567777 68999999999777654 244455555655555555
Q ss_pred c
Q 022451 244 Y 244 (297)
Q Consensus 244 ~ 244 (297)
.
T Consensus 263 ~ 263 (470)
T PRK11933 263 D 263 (470)
T ss_pred C
Confidence 4
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=88.76 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=98.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
....-+|+||||.|..+.++++..|...+.+||+....+..|.+..... +-.|+.++.+|+..+... .+.+.|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3466799999999999998888778899999999999887776654322 236788999997654433 34679999
Q ss_pred EEcCCCCCCCC--CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~--p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++.-+|||-.. ....+.+.+|++. +.+.|+|||.+-+.+. ..+.+..++..+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~ 477 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ 477 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence 99999998321 1347899999999 8999999999988753 34455555555543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=81.51 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.++..+|||||||+|.+...+.+.. ..+..+||+|++-+..|.+. .+.++++|+-+.|.. .++.||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccE
Confidence 3678999999999999999988864 67899999999998888763 478999999888865 5789999
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
||+.-+
T Consensus 79 VIlsqt 84 (193)
T PF07021_consen 79 VILSQT 84 (193)
T ss_pred EehHhH
Confidence 998755
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=82.72 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r-v~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++||+|+|-|.++..++... ..+|+.||..+..++.|+++++.. .++ .+++..-..+|... ..+||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~v~~~~~~gLQ~f~P~-~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-----NPRVGEFYCVGLQDFTPE-EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-----GCCEEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-----CCCcceEEecCHhhccCC-CCcEeEEE
Confidence 46799999999999999887643 689999999999999999987642 234 46666666666543 46899999
Q ss_pred EcCCCCCCCCCccCccc---HHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..- .+|-+ .+|++. |++.|+|+|++++..
T Consensus 128 ~QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvKE 161 (218)
T PF05891_consen 128 IQWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVKE 161 (218)
T ss_dssp EES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ehHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEEe
Confidence 97542 23333 358999 699999999999874
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-07 Score=84.07 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=70.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++.+|||||||+|.++..+++. ..+|+++|+++.+++.|+++...... .....++++...|.... +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 4679999999999999999985 46899999999999999998653210 01134678899996542 46899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+-.. .+. |... -.++++. +. .+.++|+++.
T Consensus 218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIIS 248 (315)
T ss_pred EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEE
Confidence 6532 111 1111 1245665 44 4667777653
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=85.34 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHh---ccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~~rv~~~~-~Da~~~l~---~~~~~y 176 (297)
...++||||||+|++...++...+..+++++|||+.+++.|++++..+ . + ..+++++. .|....+. ...++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l-~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--L-NGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--C-cCcEEEEEccchhhhhhcccccCCce
Confidence 468999999999988777665445679999999999999999998765 2 1 35788864 44433332 235689
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|+|++++|-
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999999973
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-07 Score=75.17 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=83.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-cCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~-~~~ 174 (297)
...+..||++|.|+|.+++.++++ .+...++++|.|++.+....+.+ |.++++.+|+... +.. ..+
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCC
Confidence 355779999999999999999986 35678999999999999888765 4567999998653 333 457
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.||.||+.++--. -| .-.+.+.++. +..+|.+||.++.-...|
T Consensus 117 ~~D~viS~lPll~--~P--~~~~iaile~-~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 117 FFDSVISGLPLLN--FP--MHRRIAILES-LLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeeeEEecccccc--Cc--HHHHHHHHHH-HHHhcCCCCeEEEEEecC
Confidence 8999999987322 22 1235578888 789999999998776443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-07 Score=82.02 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=81.4
Q ss_pred EEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHH---HHhhhhhc
Q 022451 73 VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF---CKSYLVVN 149 (297)
Q Consensus 73 ~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~---a~~~f~~~ 149 (297)
.+|-.+++. .-+.+..-|++ .-.+++|||||||.|..+-.+++. +...|+++|.++..... ++++++.
T Consensus 93 ~IDtEWrSd----~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~- 163 (315)
T PF08003_consen 93 HIDTEWRSD----WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ- 163 (315)
T ss_pred eeccccccc----chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-
Confidence 455545433 34555444432 347899999999999999999986 46789999998877644 2323221
Q ss_pred cCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+ ......+.+.|.. .+.||+|++---- +. ..|. +.+.. +++.|+|||.|++.+
T Consensus 164 -----~~~-~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl------~~L~~-Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 164 -----DPP-VFELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPL------DHLKQ-LKDSLRPGGELVLET 219 (315)
T ss_pred -----Ccc-EEEcCcchhhccc-cCCcCEEEEeeehhcc-CCHH------HHHHH-HHHhhCCCCEEEEEE
Confidence 122 2333456666766 6789999986431 11 1332 66777 899999999998775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-08 Score=88.73 Aligned_cols=99 Identities=20% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~Ii~ 181 (297)
-+++||||||||..+..+... ..++++||||..|++.|.+.=.+ =++.++|+..|+. ..+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence 589999999999999887765 57899999999999999874211 1467788888997 45789999975
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
--.-+.- ..| ..+|.. +...|+|||.|++.+
T Consensus 195 aDVl~Yl----G~L--e~~~~~-aa~~L~~gGlfaFSv 225 (287)
T COG4976 195 ADVLPYL----GAL--EGLFAG-AAGLLAPGGLFAFSV 225 (287)
T ss_pred hhHHHhh----cch--hhHHHH-HHHhcCCCceEEEEe
Confidence 3221211 122 235555 689999999998875
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-07 Score=82.05 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+||+||||.|.++..+++. ..+|+++|+|+++++.+++.+.... ..++++++.+|+.+.- -.+||.|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence 45678999999999999999985 4689999999999999999876432 1368999999987642 24689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~ 218 (297)
.+++-.. -+...++. +.. ..-...+++++
T Consensus 107 aNlPY~I--------stpil~~l-l~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 107 ANVPYQI--------SSPLVFKL-LAHRPLFRCAVLMFQ 136 (294)
T ss_pred ecCCccc--------CcHHHHHH-HhcCCCCceeeeeeh
Confidence 9876322 23345554 432 22235566666
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=88.37 Aligned_cols=105 Identities=19% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.|||+|+|+|.+...+++. ....+|.+||-||.++...++....++ + +++|+++.+|.+++- .+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence 467999999999998776653 235799999999998887766543332 2 368999999998863 3569999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|++-+.... + ... ...|-+.. ..+.|+|||+++=
T Consensus 262 IVSElLGsf--g-~nE-l~pE~Lda-~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 262 IVSELLGSF--G-DNE-LSPECLDA-ADRFLKPDGIMIP 295 (448)
T ss_dssp EEE---BTT--B-TTT-SHHHHHHH-GGGGEEEEEEEES
T ss_pred EEEeccCCc--c-ccc-cCHHHHHH-HHhhcCCCCEEeC
Confidence 999987432 1 123 34567777 7899999998863
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-06 Score=79.99 Aligned_cols=147 Identities=21% Similarity=0.189 Sum_probs=102.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.++.. ..++..+.+|++++.... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v---~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV---EGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc---cceeeEEeccHHHhhhcc-ccCCEEE
Confidence 4589999999999999999998754 3499999999999999999988852 356999999999988654 7799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE-EecCcc-CCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADT 258 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~-~~vp~~-~~~ 258 (297)
+..+.. +.+|+.. +.+.|+++|++-.....+...........+.....+.-..+.... -.+.+| ++.
T Consensus 262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v 330 (341)
T COG2520 262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGV 330 (341)
T ss_pred eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCe
Confidence 987631 2367777 789999999998876544211111123333333333322233332 345666 455
Q ss_pred eeEEE
Q 022451 259 WGWIM 263 (297)
Q Consensus 259 ~~~~~ 263 (297)
|.+.+
T Consensus 331 ~hv~v 335 (341)
T COG2520 331 YHVVV 335 (341)
T ss_pred eEEEE
Confidence 55543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=77.08 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=55.8
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-C-CceEEEEc
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~-~yD~Ii~D 182 (297)
.|+|+.||.|+-+.++++.+ .+|++||+||.-++.|+.+....+ -..|++++++|..+.++... . .||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999974 689999999999999999977543 14789999999999886532 2 28999999
Q ss_pred CC
Q 022451 183 LA 184 (297)
Q Consensus 183 ~~ 184 (297)
+|
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 85
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-07 Score=82.41 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|+|||+|.|.++..+++.+|..++++.|+ |.+++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 4567999999999999999999888999999999 999999988 279999999965 33344 99998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCC--cEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pg--Gvl~~~~ 219 (297)
+--. +.|. + =-....++. +++.|+|| |.|++..
T Consensus 164 l~~vLh~~~--d---~~~~~iL~~-~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDWS--D---EDCVKILRN-AAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred eehhhhhcc--h---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence 8654 2231 1 112467888 79999998 9888774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-07 Score=79.26 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~I 179 (297)
+++.+|||||||+|.++..+++.. ..+++++|+++.+++.|++ .+++++.+|+.+.+. ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 456799999999999998887654 4578999999999998874 246788899876443 235689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP 211 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p 211 (297)
++...-.+... ...++++ +.+.+++
T Consensus 80 i~~~~l~~~~d------~~~~l~e-~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRN------PEEILDE-MLRVGRH 104 (194)
T ss_pred EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence 99864322111 2356666 5665543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-07 Score=81.72 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=61.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+||+||||.|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEE
Confidence 45689999999999999999987 36899999999999999987642 368999999987641 23589999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.+++-
T Consensus 97 ~NlPy 101 (258)
T PRK14896 97 SNLPY 101 (258)
T ss_pred EcCCc
Confidence 99763
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=76.96 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCCCCe
Q 022451 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRL 158 (297)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~~rv 158 (297)
.|.+.|-.+-- ...++-+.|++|.|+|.++.-+... .+.....+||.-|++++.+++++... ...++..++
T Consensus 68 mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 68 MHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 45555543221 1257789999999999997666643 23344489999999999999987532 233667899
Q ss_pred EEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 159 ~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.++++|++.--. ...+||.|.+-+..+. .-+. +-..|++||.+++-.
T Consensus 147 ~ivvGDgr~g~~-e~a~YDaIhvGAaa~~------------~pq~-l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 147 SIVVGDGRKGYA-EQAPYDAIHVGAAASE------------LPQE-LLDQLKPGGRLLIPV 193 (237)
T ss_pred EEEeCCccccCC-ccCCcceEEEccCccc------------cHHH-HHHhhccCCeEEEee
Confidence 999999987543 4578999999875432 2234 567899999888754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=81.37 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+|+++|+|+.+++.+++.+. +++++++.+|+.++- ..+-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~-~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVD-LSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCC-HHHcCcceEE
Confidence 466799999999999999999874 389999999999999998652 268999999987652 1111158899
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 8875
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=82.91 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=85.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~I 179 (297)
...++||+=||.|.++..+++. ..+|++||+++.+++.|+++...++ -.|++++.+|+.++.... ...+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4578999999999999999964 6899999999999999999987764 355999999999998764 3578999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
++|++.. -..+++.+. + ..++|..++.+.+++
T Consensus 367 vvDPPR~--------G~~~~~lk~-l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 367 VVDPPRA--------GADREVLKQ-L-AKLKPKRIVYVSCNP 398 (432)
T ss_pred EECCCCC--------CCCHHHHHH-H-HhcCCCcEEEEeCCH
Confidence 9998742 124578887 3 688999999888654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=77.44 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++..||+||+|.|.++..+++. ..+|++||+|+.+++..++.+.. .++++++.+|+..+=-..-.+++.|+.
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVa 101 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFPSLAQPYKVVA 101 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcchhhcCCCEEEE
Confidence 3689999999999999999996 46899999999999999998752 278999999986642111116899999
Q ss_pred cCC
Q 022451 182 DLA 184 (297)
Q Consensus 182 D~~ 184 (297)
+++
T Consensus 102 NlP 104 (259)
T COG0030 102 NLP 104 (259)
T ss_pred cCC
Confidence 986
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=76.33 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=86.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+.=|||||||+|..+..+... .-...+|||+|.|++.|.+. ... -.++.+|--+-+....+.||.+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence 667999999999999887764 36789999999999999862 111 2366677656666677899987765
Q ss_pred CCCCC-------CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHH-HHHhhCCce
Q 022451 183 LADPI-------EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN-TLRQVFKYV 245 (297)
Q Consensus 183 ~~~~~-------~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~-~l~~~F~~v 245 (297)
..-.| ...|...| ..||.. +..+|++|+..+++..+. +..+...+.+ ++++-|..-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl--~~FF~t-Ly~~l~rg~raV~QfYpe----n~~q~d~i~~~a~~aGF~GG 183 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRL--LRFFGT-LYSCLKRGARAVLQFYPE----NEAQIDMIMQQAMKAGFGGG 183 (270)
T ss_pred eeeeeecccCccccChHHHH--HHHhhh-hhhhhccCceeEEEeccc----chHHHHHHHHHHHhhccCCc
Confidence 54332 12232233 368998 899999999999997643 3344444444 455557653
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.3e-06 Score=68.80 Aligned_cols=127 Identities=21% Similarity=0.216 Sum_probs=91.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++=+|+||||+|.++..+.+. .+.....+.||||...+..++-...+ .-++..+..|...-++. ++.|++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence 34788999999999998888874 45667889999999999877765443 35688999998888865 889999
Q ss_pred EEcCC-CCCCCCC--------------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLA-DPIEGGP--------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~-~~~~~~p--------------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.+++ .|....+ ...-.+..++.+ +...|+|.|++.+.... ....+++++.+++.
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~------~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALR------ANKPKEILKILEKK 184 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehh------hcCHHHHHHHHhhc
Confidence 99986 2321111 111224567777 78999999999887532 12235666666654
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=81.07 Aligned_cols=122 Identities=24% Similarity=0.148 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-ch
Q 022451 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA 165 (297)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da 165 (297)
.+.+.|+.++ ...++..|||=-||||+++.++.-. ..++.+.|+|.+|++-|+.++...+ -+...++.. ||
T Consensus 184 ~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da 255 (347)
T COG1041 184 RLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDA 255 (347)
T ss_pred HHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEeccc
Confidence 3556666543 3356789999999999999998865 4789999999999999999997652 245656666 87
Q ss_pred HHHHhccCCCceEEEEcCCCCCCCC-C---ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 RAELESRKESYDVIIGDLADPIEGG-P---CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~~~~~-p---~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ++-.+.++|.|+.|+|-...+. . ...|+ .++++. +.++|++||.+++..
T Consensus 256 ~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~-~~evLk~gG~~vf~~ 310 (347)
T COG1041 256 TN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALES-ASEVLKPGGRIVFAA 310 (347)
T ss_pred cc-CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHH-HHHHhhcCcEEEEec
Confidence 54 4433457999999998432211 1 12344 478888 899999999999874
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=73.91 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=65.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--h-ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~-~~~~~y 176 (297)
...+++||+||||+|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-|.-+.+ . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccC
Confidence 3568899999999999998888875678999999999 99999998876532 23467777665532212 1 124689
Q ss_pred eEEEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+.. ..- . .-.-..+++. +++.|+++|.+++.
T Consensus 121 D~IlasDv~Y----~---~~~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 121 DVILASDVLY----D---EELFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp SEEEEES--S--------GGGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred CEEEEecccc----h---HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 998864 221 1 1123467777 79999999875544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=76.05 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--------cCCCCCCCeEEEEcchHHHHh--
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE-- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~--------~~~~~~~rv~~~~~Da~~~l~-- 170 (297)
+++.+||+.|||.|.-+..|++. .-+|++||+++..++.+.+..... ...+...+++++++|.+++=.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999986 357999999999999886632110 001234579999999887521
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
...++||+|+--.+-.. -| .. ....+.+. +.+.|+|||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~A--lp-p~-~R~~Y~~~-l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIA--LP-ND-LRTNYAKM-MLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhc--CC-HH-HHHHHHHH-HHHHhCCCcEEEEE
Confidence 12357999875544211 12 12 24567888 89999999977654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=75.22 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=73.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES---- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-----~~~l~~---- 171 (297)
.+.+|||||++.|+++..++++. +..+|.+||+.+. .- .+.+..+.+|. .+.+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccchhhHHHhhhhhccc
Confidence 56899999999999999999875 4689999999877 10 12333333442 122222
Q ss_pred cCCCceEEEEcCCCCCCCCCc------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
..+++|+|++|........+. ..|. ..-+.. +.+.|+|||.+++..- ..... ..++..++..|..+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV 159 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHH-HHHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHH-HHHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence 236899999998532211110 0111 112223 4578999998888752 22222 37777788888887
Q ss_pred eEEE
Q 022451 246 VPYS 249 (297)
Q Consensus 246 ~~~~ 249 (297)
..+.
T Consensus 160 ~~~K 163 (181)
T PF01728_consen 160 KIVK 163 (181)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.7e-06 Score=75.81 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=59.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce---
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD--- 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD--- 177 (297)
.++.+||+||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.++-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 467899999999999999999875 4699999999999999987642 3689999999866421 2466
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|+.+++
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888865
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=69.65 Aligned_cols=92 Identities=20% Similarity=0.263 Sum_probs=65.1
Q ss_pred CeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHH
Q 022451 157 RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 157 rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~ 236 (297)
+++++.+|+++.++....++|+|+.|.++|.. . ..+++.++|+. +.++++|||+++..+.. ..+.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-n--PelWs~e~~~~-l~~~~~~~~~l~Tys~a----------~~Vr~ 97 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-N--PELWSEELFKK-LARLSKPGGTLATYSSA----------GAVRR 97 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-S--GGGSSHHHHHH-HHHHEEEEEEEEES--B----------HHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-C--cccCCHHHHHH-HHHHhCCCcEEEEeech----------HHHHH
Confidence 46789999999998877899999999998862 3 47999999999 89999999999987421 35667
Q ss_pred HHHhhCCceeEEEEecCccCCceeEEEEec
Q 022451 237 TLRQVFKYVVPYSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 237 ~l~~~F~~v~~~~~~vp~~~~~~~~~~as~ 266 (297)
.|.+..=.|. ..|.++.-...+.|++
T Consensus 98 ~L~~aGF~v~----~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 98 ALQQAGFEVE----KVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHCTEEEE----EEE-STTSSEEEEEEC
T ss_pred HHHHcCCEEE----EcCCCCCcchheEEEc
Confidence 7777633332 4566766566676665
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=75.77 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hhhhcc-------CCCCCCCeEEEEcchHHHHhc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~f~~~~-------~~~~~~rv~~~~~Da~~~l~~ 171 (297)
.+.+.+||+.|||.|.-+..+++. .-+|++||+++..++.+.+ +..... ....+.+++++++|.+++-..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456679999999999999999986 3689999999999999843 221110 012356899999998875433
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEE
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl 215 (297)
..++||+|+=-.+-.. .| .-...++.+. +.+.|+|||.+
T Consensus 113 ~~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~~ 151 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGRG 151 (218)
T ss_dssp CHHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEEE
T ss_pred hcCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCcE
Confidence 3357999986544221 22 2235578888 89999999983
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-06 Score=71.14 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.++.+||.+|.|-|.+...+.+..|. +-+.+|-.|.|....|..-.. +..+|.+..+-..+.+.. .++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 67899999999999999888887655 557799999999999987432 236777777655555543 34669999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.|.+.+.. --.++|++. +-+.|||+|++...
T Consensus 174 ~yDTy~e~y------Edl~~~hqh-~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELY------EDLRHFHQH-VVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHH------HHHHHHHHH-HhhhcCCCceEEEe
Confidence 999985431 124589998 89999999999754
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=77.15 Aligned_cols=78 Identities=23% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC---Cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~---~y 176 (297)
.++..++|++||.|+.+..+++..+ ..+|+++|.||.+++.|++.+.. ..|++++++|..++.....+ ++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 3456899999999999999998753 67999999999999999987532 26899999999887644322 79
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.|+-
T Consensus 92 DgIl~DLG 99 (296)
T PRK00050 92 DGILLDLG 99 (296)
T ss_pred CEEEECCC
Confidence 99999984
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-06 Score=71.66 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcE---------EEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
.+...+||--||+|+++.+++....... +.++|+|+.+++.|++++...+ -...+.+...|++++- .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~ 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence 4567899999999999988876433333 8999999999999999987543 1356899999988754 3
Q ss_pred cCCCceEEEEcCCCCCCCCC---ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..+.+|+|+.|+|-....+. ...|| .+|++. +++.|++..++++.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT 150 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence 45689999999974332111 11333 467788 78999995555544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.1e-06 Score=83.35 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-------C-----CcEEEEEECCHHH---HHHH-----------Hhhhhh-c----c
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-------T-----VEKVVMCDIDEEV---VEFC-----------KSYLVV-N----K 150 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-------~-----~~~v~~VEid~~v---i~~a-----------~~~f~~-~----~ 150 (297)
..-+||++|.|+|.....+.+.. + .-+++.+|.+|.. +..+ ++.... + +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999998654444221 1 2489999986622 2211 111100 0 0
Q ss_pred ---CCCCCC--CeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 151 ---EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 151 ---~~~~~~--rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+.+. +++++.+|+++.++....++|+|++|.|+|.. . ..+++.++|+. +.++++|||+++..+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-n--p~~W~~~~~~~-l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-N--PDMWSPNLFNA-LARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-C--hhhccHHHHHH-HHHHhCCCCEEEEee
Confidence 012233 45688999999998766779999999998862 2 48999999999 899999999999875
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.3e-06 Score=74.29 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=67.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...++||||+|+|.++..+..++ .+|++-|+++.|....++. ..+++-.| + ..+.+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~-w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--D-WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--h-hhccCCceEEEee
Confidence 46789999999999999998875 6799999999998665542 23444333 2 2334578999976
Q ss_pred c-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
- .-|-. ..| ...++. +++.|+|+|++++-.
T Consensus 158 LNvLDRc-~~P------~~LL~~-i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRC-DRP------LTLLRD-IRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhcc-CCH------HHHHHH-HHHHhCCCCEEEEEE
Confidence 3 22321 133 256788 899999999887653
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.5e-05 Score=72.17 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---------- 171 (297)
.+.+|||+-||.|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+++.++...
T Consensus 196 ~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 196 SKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp -TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred CCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHhh
Confidence 3458999999999999999986 5799999999999999999988764 36899999887655321
Q ss_pred -----cCCCceEEEEcCCC
Q 022451 172 -----RKESYDVIIGDLAD 185 (297)
Q Consensus 172 -----~~~~yD~Ii~D~~~ 185 (297)
...++|+|++|||.
T Consensus 270 ~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp GGS-GGCTTESEEEE---T
T ss_pred hhhhhhhcCCCEEEEcCCC
Confidence 12368999999874
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=66.97 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEccchhHHHHHHHhcCC-C--cEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-CCceEE
Q 022451 107 FIMGGGEGSTAREILRHKT-V--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~-~--~~v~~VEid~~---vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~~yD~I 179 (297)
|+||+..|..+..+++..+ . .++++||..+. .-+..++ ... ..+++++.+|..+++..-. ++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~------~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL------SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GGG-------BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC------CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 6799889998877776422 2 37999999995 3333333 111 3579999999998887644 799999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++|..... -.....++. +.++|+|||++++.
T Consensus 74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence 99975321 123456777 78999999999875
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=69.43 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=67.0
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-c-CCCCC---CCeEEEEcchHHHHhccCCCceEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-EAFSD---PRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-~-~~~~~---~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
+|||+-+|.|..+.+++.. .++|++||-+|.+..+.++.+... . ..... .|++++.+|+.+||+...+.||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999986 356999999999999999887631 1 01111 579999999999998766789999
Q ss_pred EEcCCCCC
Q 022451 180 IGDLADPI 187 (297)
Q Consensus 180 i~D~~~~~ 187 (297)
++|++-|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99998665
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=70.18 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=96.3
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhccC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK 173 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~~ 173 (297)
++...++..||+-|.|+|++..++++. .|..++...|....-.+.|++.|.... -..++++.+.|... |.. ..
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks 175 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KS 175 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-cc
Confidence 344567789999999999999999984 567899999999999999999887553 24789999988754 332 25
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh-hCCceeEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPY 248 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~-~F~~v~~~ 248 (297)
..+|.|++|++.||.+.|. +..+|+.+|.-+.+. +| .-++.++-...+++ -|-.+...
T Consensus 176 ~~aDaVFLDlPaPw~AiPh------------a~~~lk~~g~r~csF-SP----CIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 176 LKADAVFLDLPAPWEAIPH------------AAKILKDEGGRLCSF-SP----CIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred cccceEEEcCCChhhhhhh------------hHHHhhhcCceEEec-cH----HHHHHHHHHHHHHhCCCceEEEE
Confidence 7899999999999966552 345888888655554 23 24556666666666 36665444
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.2e-06 Score=76.06 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+.+.|||+|||+|.++..+++.. ..+|.+||-+..+ +.|++-+..++ -+..++++.+.+.+. .-+-++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEE-ecCccceeEEee
Confidence 67899999999999999999874 7899999997655 88888776554 235789998887665 223589999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
..-.-+ -..+.+++.-.|.. -+-|+|||.+.
T Consensus 134 EWMGy~--Ll~EsMldsVl~AR--dkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF--LLYESMLDSVLYAR--DKWLKEGGLIY 164 (346)
T ss_pred hhhhHH--HHHhhhhhhhhhhh--hhccCCCceEc
Confidence 764211 00011222222332 48999999875
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=72.47 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=63.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.-||++|.|+|.++..+++. +++|.++|+||.|+....+.+.... ...+++++++| +++.....||.++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD---~lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGD---FLKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEecc---cccCCCcccceee
Confidence 56778999999999999999986 5799999999999988877765321 24689999999 4655557899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.+++-
T Consensus 129 sNlPy 133 (315)
T KOG0820|consen 129 SNLPY 133 (315)
T ss_pred ccCCc
Confidence 98874
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.6e-05 Score=71.10 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC--C
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--E 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~--~ 174 (297)
...++.+|||++++.|+=+.+++..... ..|+++|+|+.=++..++++...+ -.++.++..|++.+..... .
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccccC
Confidence 3456789999999999887777775433 456999999999999999876442 2458899999887654322 3
Q ss_pred CceEEEEcCCCCCC----CCCcc------------CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 175 SYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
+||.|++|++-... ..|.. .-+..+++.. +.+.|+|||+|+..+++- ..+.-+.++..+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~vV~~~ 303 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEVVERF 303 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHHHHHH
Confidence 69999999982211 11210 1123567777 689999999999887653 334445555555
Q ss_pred HhhCCce
Q 022451 239 RQVFKYV 245 (297)
Q Consensus 239 ~~~F~~v 245 (297)
-+..+..
T Consensus 304 L~~~~~~ 310 (355)
T COG0144 304 LERHPDF 310 (355)
T ss_pred HHhCCCc
Confidence 5454443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.7e-06 Score=72.55 Aligned_cols=101 Identities=26% Similarity=0.425 Sum_probs=79.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe--EEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv--~~~~~Da~~~l~~~~~~yD~ 178 (297)
.....+++|||+-|.+.+.+... ++.+++.+|.+..|++.|+.- .||.+ ...++| .++|.-...++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence 34567999999999999999986 488999999999999998863 34554 456777 5677666789999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|++.+.-+|.. .|- ..+.. |+..|||+|.++..
T Consensus 141 iisSlslHW~N----dLP--g~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTN----DLP--GSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhc----cCc--hHHHH-HHHhcCCCccchhH
Confidence 99999878732 221 45666 69999999999754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-06 Score=68.05 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=57.9
Q ss_pred EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC
Q 022451 130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 130 ~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L 209 (297)
+++|+++.|++.|++........ ..++++++.+|+.+. ...++.||+|++...-++. + --.+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~--~----d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV--V----DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC-CCCCCCeeEEEecchhhcC--C----CHHHHHHH-HHHHc
Confidence 48999999999998765422100 125799999998764 4456789999987543221 1 12478899 89999
Q ss_pred CCCcEEEEec
Q 022451 210 NPEGIFVTQA 219 (297)
Q Consensus 210 ~pgGvl~~~~ 219 (297)
+|||.+++..
T Consensus 72 kpGG~l~i~d 81 (160)
T PLN02232 72 KPGSRVSILD 81 (160)
T ss_pred CcCeEEEEEE
Confidence 9999998764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=72.02 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--CCCeEEEEcchHHHH-----hcc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDARAEL-----ESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--~~rv~~~~~Da~~~l-----~~~ 172 (297)
.++...+|+||||-|+-++...+. +...++++||....++-|++.......... .=.+.++.+|...-. ...
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 366788999999999887766664 578999999999999999886542210000 013689999985432 112
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+||+|-+--.-+..-.. .---+-+++. +.++|+|||+++-..
T Consensus 194 dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence 3449998765432210000 0001246777 789999999998763
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.04 E-value=8e-06 Score=76.49 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-----CCCeEEEEcchHHH-Hhc---
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARAE-LES--- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-----~~rv~~~~~Da~~~-l~~--- 171 (297)
++.+|||||||-|+-+.-.... +..+++++||++..++-|++... ....... +=...++.+|+..- |..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999977755444443 47899999999999999988762 1110000 11356788887532 221
Q ss_pred -cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 -~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+||+|-+-..-+..-. ..-..+.+++. +.++|+|||+++..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fe--se~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFE--SEEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGS--SHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcC--CHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 2358999988754322000 01112458888 799999999998775
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.7e-05 Score=76.46 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l---- 169 (297)
...+|||.|||+|.+...++...+ ..+++++|+|+.++..|+..+.... ....++..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456899999999999887775421 2578999999999999998875432 123566666643321
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
....++||+|+.++|
T Consensus 107 ~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 107 ESYLDLFDIVITNPP 121 (524)
T ss_pred ccccCcccEEEeCCC
Confidence 112357999999997
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.2e-06 Score=75.20 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
......+|||-+||+|+++.++.++ ....++.++|+|+.++.+|+-++.+.+. ......+..+|....-..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~ 120 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKF 120 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSC
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--cccccccccccccccccc
Confidence 3345568999999999998887763 2467999999999999999987654321 123456888986543222
Q ss_pred c-CCCceEEEEcCCCCCC--CCC-------------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH
Q 022451 172 R-KESYDVIIGDLADPIE--GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (297)
Q Consensus 172 ~-~~~yD~Ii~D~~~~~~--~~p-------------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~ 235 (297)
. .++||+|+.++|-... ... ...-....|++. +.+.|++||.+++-.. .+..........++
T Consensus 121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~Ilp-~~~L~~~~~~~~iR 198 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAIILP-NGFLFSSSSEKKIR 198 (311)
T ss_dssp TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHGSTHHHHHH
T ss_pred ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEEec-chhhhccchHHHHH
Confidence 2 4689999999873211 000 000112247788 6899999998766531 11111222334555
Q ss_pred HHHHhh
Q 022451 236 NTLRQV 241 (297)
Q Consensus 236 ~~l~~~ 241 (297)
+.|-+.
T Consensus 199 ~~ll~~ 204 (311)
T PF02384_consen 199 KYLLEN 204 (311)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=63.29 Aligned_cols=100 Identities=21% Similarity=0.362 Sum_probs=72.9
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
.+++|||.|+|.=+.-++=..|..+++.||....=+...+.-.... +-++++++.+.+.+ .....+||+|++-+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 3899999999964443333346789999999998887766654422 23579999999887 34568899999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+. ..++.. +...|++||.++..-+
T Consensus 124 v~~l----------~~l~~~-~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 124 VAPL----------DKLLEL-ARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SSSH----------HHHHHH-HGGGEEEEEEEEEEES
T ss_pred hcCH----------HHHHHH-HHHhcCCCCEEEEEcC
Confidence 7432 256677 7899999999988765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=63.99 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=85.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----HHhc--c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES--R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-----~l~~--~ 172 (297)
.....|+|||+..|++++.+.+.. +...|++||+.|.- ..+.|.++.+|.+. -|.. .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 567899999999999999999863 33459999998643 12568888888632 2222 2
Q ss_pred CCCceEEEEcCCCCCCCCCc-cCcc----cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
..++|+|++|.......... .+.. ....++. +...|+|+|.+++.. .+.+....++..+++.|..+..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeEE
Confidence 34579999998743221110 1111 1112233 468999999998874 3455668899999999998875
Q ss_pred EE
Q 022451 248 YS 249 (297)
Q Consensus 248 ~~ 249 (297)
..
T Consensus 182 ~K 183 (205)
T COG0293 182 FK 183 (205)
T ss_pred ec
Confidence 53
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.4e-05 Score=68.47 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=64.3
Q ss_pred CCCeEEEEccchhHHHHHHH-h-cCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREIL-R-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~-~-~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.|++|+.||+|.=-++.-++ + +.+...|+.+|+||+.++.+++-.. ..+ + ..+++++.+|+...-. .-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L-~~~m~f~~~d~~~~~~-dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--L-SKRMSFITADVLDVTY-DLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--SSEEEEES-GGGG-G-G----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--c-cCCeEEEecchhcccc-ccccCCE
Confidence 47899999999766654444 3 3446789999999999999998765 221 1 4789999999866432 2367999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++.+.......+ ..+.++. +.+.++||..+++-.
T Consensus 196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 9998874321122 3578888 799999999999874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=67.06 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=97.2
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~y 176 (297)
...+...|||+++|.|+=+.+++... ....|+++|+++.-+...++++...+ -.++.+...|++.+.... ...|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeecccccccccccccc
Confidence 34566889999999999887777753 36799999999999999998876432 367888889999886543 3469
Q ss_pred eEEEEcCCCCC----CCCCcc------------CcccHHHHHHHHcccC----CCCcEEEEecCCCCCcCCchHHHHHHH
Q 022451 177 DVIIGDLADPI----EGGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 177 D~Ii~D~~~~~----~~~p~~------------~L~t~ef~~~~~~~~L----~pgGvl~~~~~~p~~~~~~~~~~~i~~ 236 (297)
|.|++|++-.. ...|.. .-...+.++. +.+.| +|||+++..+++ ...+.-+.+++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS----~~~eENE~vV~ 232 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS----LSPEENEEVVE 232 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH----HHGGGTHHHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc----HHHHHHHHHHH
Confidence 99999998221 112210 0123557777 68899 999999887753 23344455666
Q ss_pred HHHhhCCcee
Q 022451 237 TLRQVFKYVV 246 (297)
Q Consensus 237 ~l~~~F~~v~ 246 (297)
.+-+.++...
T Consensus 233 ~fl~~~~~~~ 242 (283)
T PF01189_consen 233 KFLKRHPDFE 242 (283)
T ss_dssp HHHHHSTSEE
T ss_pred HHHHhCCCcE
Confidence 6555666654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=61.71 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=91.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~ 173 (297)
.++.+||-||.++|++...+... .+...|.+||.+|.. +.+|+++ +|+--+.+||+.--+- --
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhccc
Confidence 56789999999999999988875 346799999999955 4555553 7888899999754322 13
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC--CCCC-cCCchHHHHHHHHHHhh-CCceeEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGI-FSHTEVFSCIYNTLRQV-FKYVVPYS 249 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~--~p~~-~~~~~~~~~i~~~l~~~-F~~v~~~~ 249 (297)
+..|+|+.|...|. + .+-+... ++.-|++||.+++-.. +-++ ......++...+.|++. |.-.. .
T Consensus 142 ~~VDvI~~DVaQp~------Q--a~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e--~ 210 (229)
T PF01269_consen 142 EMVDVIFQDVAQPD------Q--ARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE--Q 210 (229)
T ss_dssp --EEEEEEE-SSTT------H--HHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE--E
T ss_pred ccccEEEecCCChH------H--HHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe--E
Confidence 58999999987553 1 1234455 6789999997775531 1100 12345777778888874 54332 2
Q ss_pred EecCccCCceeEEEEe
Q 022451 250 AHIPSFADTWGWIMVS 265 (297)
Q Consensus 250 ~~vp~~~~~~~~~~as 265 (297)
..+..|......+++.
T Consensus 211 i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 211 ITLEPYERDHAMVVGR 226 (229)
T ss_dssp EE-TTTSTTEEEEEEE
T ss_pred eccCCCCCCcEEEEEE
Confidence 3455565445555554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.1e-05 Score=66.15 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF 141 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 141 (297)
...+.|||+|||+|.++..+++. +..+|++||+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999986 57899999999977654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.4e-05 Score=69.96 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=60.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~ 178 (297)
.....||+||.|.|.+++++++.. .++++||+|+...+..++.+. .+++++++.+|+.++-... ..+...
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceE
Confidence 367899999999999999999975 899999999999999998765 2589999999987753221 235668
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
|+.+++
T Consensus 101 vv~NlP 106 (262)
T PF00398_consen 101 VVGNLP 106 (262)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 888765
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.4e-05 Score=71.66 Aligned_cols=104 Identities=29% Similarity=0.334 Sum_probs=76.3
Q ss_pred CCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+-+|||.=+|+|.=+...+ +..+..+|++-|+||+.+++.++++.+++. .+.++++...||...+.....+||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 4589998778887654444 435678999999999999999999987752 2348999999999998656789999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++. .|. .|+.. +.+.++.||+|.+..
T Consensus 128 DPfG----Sp~------pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFG----SPA------PFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------H------HHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCC----Ccc------HhHHH-HHHHhhcCCEEEEec
Confidence 9984 332 68888 788999999998874
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.3e-05 Score=63.22 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-.++++++||||.|-+..... .+....|.++||||+.+++++++..... -++.+.+.|...... ..+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~-~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL-KGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc-cCCeEeeEE
Confidence 468999999999999985555 4567899999999999999999865321 234566666443322 347899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~ 210 (297)
.|++.... ..-.+.+|.+. ..+..+
T Consensus 120 iNppFGTk----~~~aDm~fv~~-al~~~~ 144 (185)
T KOG3420|consen 120 INPPFGTK----KKGADMEFVSA-ALKVAS 144 (185)
T ss_pred ecCCCCcc----cccccHHHHHH-HHHHHH
Confidence 99874321 12245677776 444444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=65.76 Aligned_cols=98 Identities=24% Similarity=0.291 Sum_probs=74.5
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
..+.|+|+|+|.++..+++. ..+|.++|.||...+.|++++..+ .+.+++++.+||+.|= -+..|+|++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA~~y~---fe~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDARDYD---FENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccccccc---ccccceeHHHH
Confidence 57899999999999887765 689999999999999999998766 3679999999999872 25689999876
Q ss_pred CCCCCCCCccCcccH---HHHHHHHcccCCCCcEEEEe
Q 022451 184 ADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGvl~~~ 218 (297)
-|.. |... ..++. +.+-|+.++.++-+
T Consensus 105 lDTa-------Li~E~qVpV~n~-vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTA-------LIEEKQVPVINA-VLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHH-------hhcccccHHHHH-HHHHhhcCCccccH
Confidence 6421 1111 33444 45577788877633
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=75.11 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCCeEEEEccchhHHHHHHHhc----C--------------------------------------CCcEEEEEECCHHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRH----K--------------------------------------TVEKVVMCDIDEEVV 139 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~----~--------------------------------------~~~~v~~VEid~~vi 139 (297)
....++|-+||+|+++.+++.. . ...+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999887642 0 123699999999999
Q ss_pred HHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCC
Q 022451 140 EFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLAD 185 (297)
Q Consensus 140 ~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~ 185 (297)
+.|+++....+ -..++++..+|+.+.-.. ..++||+|++|+|-
T Consensus 270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 99999987653 135789999998875322 12579999999873
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.9e-05 Score=60.64 Aligned_cols=70 Identities=21% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++++||+||||.|. ++..+.+. ..+|+++|+||..++.|++. .++++.+|.++-=..--+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 356889999999996 77777764 46999999999999988764 35677777643211112457888
Q ss_pred EEcC
Q 022451 180 IGDL 183 (297)
Q Consensus 180 i~D~ 183 (297)
..--
T Consensus 82 ysir 85 (134)
T PRK04148 82 YSIR 85 (134)
T ss_pred EEeC
Confidence 7653
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=66.39 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=82.6
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+++|||-=+|+|.=+...+...+..+|++-|+||..+++.++++..+. .....++..|+-.++.+....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 889999888999876555554445589999999999999999998762 2455666699999998877899999999
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|. .|. .|++. +.+.++.+|++.+..
T Consensus 129 PFG----SPa------PFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFG----SPA------PFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC----CCc------hHHHH-HHHHhhcCCEEEEEe
Confidence 984 343 67777 778889999998874
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0013 Score=57.74 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+++++|||.|.|.=+.-++-..|..+||.+|....=+...++-... ++-++++++++-+.++-..... ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEee
Confidence 7999999999996443333223566799999998877766553321 2347899999998887533222 9999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-CceeEEEEecCcc
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSF 255 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~~~~~~vp~~ 255 (297)
+..+. ..+... +...|++||.+++.-.. ...+.+....+.+.... .-...+....|..
T Consensus 143 Ava~L----------~~l~e~-~~pllk~~g~~~~~k~~----~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 143 AVASL----------NVLLEL-CLPLLKVGGGFLAYKGL----AGKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred hccch----------HHHHHH-HHHhcccCCcchhhhHH----hhhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 87432 134444 68999999987654321 12334445555555443 3333344455654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0006 Score=62.16 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~ 175 (297)
...|-+||+|.||.|.....++...+. .+|...|.+|.-++..++.....+ + .+-+++..+||++. +..-..+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L-~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--L-EDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--C-ccceEEEecCCCCHhHhhccCCC
Confidence 457889999999999998888875544 799999999999999998776442 1 23459999999775 4444567
Q ss_pred ceEEEEcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 176 YDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 176 yD~Ii~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
.+++++.- ++-. +...+.. .-++. +.++|.|||.++. ++-| | + ++++-+.+.|.+
T Consensus 210 P~l~iVsGL~ElF---~Dn~lv~-~sl~g-l~~al~pgG~lIy-TgQP--w-H-PQle~IAr~Lts 265 (311)
T PF12147_consen 210 PTLAIVSGLYELF---PDNDLVR-RSLAG-LARALEPGGYLIY-TGQP--W-H-PQLEMIARVLTS 265 (311)
T ss_pred CCEEEEecchhhC---CcHHHHH-HHHHH-HHHHhCCCcEEEE-cCCC--C-C-cchHHHHHHHhc
Confidence 88877653 3211 1112222 34555 6789999999864 4444 3 2 234455555544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00028 Score=65.93 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..++||||+++|+.+..+++.. .+|++||..+..-.+ ..+++|+.+.+|+..+... .+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 467899999999999999999873 499999965522111 2469999999999988653 57899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
+|...
T Consensus 276 cDmve 280 (357)
T PRK11760 276 CDMVE 280 (357)
T ss_pred Eeccc
Confidence 99874
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00035 Score=64.66 Aligned_cols=102 Identities=21% Similarity=0.349 Sum_probs=74.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..+-|||+|||+|.+...++.. +.++|.+||-+ +|.+.|++-...+. -.+|+.++.|-..+ +. -+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEd-ie-LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIED-IE-LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCcccc-cc-CchhccEEEe
Confidence 4678999999999999888875 58899999995 57788888766442 34789999887544 22 3588999999
Q ss_pred cCCCCCCCCCccCcccHH---HHHHHHcccCCCCcEEEEe
Q 022451 182 DLADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~e---f~~~~~~~~L~pgGvl~~~ 218 (297)
.+-. ..|+.+. -|-. +++-|+|.|.+.-.
T Consensus 250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 8642 1233333 3333 57999999988644
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0002 Score=62.17 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCeEEEEccchhH----HHHHHHh---c-CC-CcEEEEEECCHHHHHHHHhh------------------h-hhccCCC
Q 022451 102 NPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF 153 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------f-~~~~~~~ 153 (297)
.+-+|+..||++|- ++..+.. . .+ ..+|++.|||+.+++.|++- | ...+..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56789999999995 3333333 1 11 35999999999999999882 2 1111000
Q ss_pred C-----CCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 154 S-----DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 154 ~-----~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
. ..+|++...|..+ .....++||+|++--.--. ...-.....++. +.+.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY----F~~~~~~~vl~~-l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY----FDPETQQRVLRR-LHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGG----S-HHHHHHHHHH-HGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE----eCHHHHHHHHHH-HHHHcCCCCEEEEec
Confidence 0 1467788888766 1223578999998632100 001112457777 789999999999863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=55.62 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-ch---HHHHh----c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA---RAELE----S 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da---~~~l~----~ 171 (297)
.+..+|||+|+..|++++.+.+.. |..-|.+|||- ++.-. +.+.++.+ |. ..+.+ .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~------~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP------EGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC------CCcccccccccCCHHHHHHHHHhC
Confidence 457899999999999999988764 78899999983 22111 23344443 32 22211 1
Q ss_pred cCCCceEEEEcCCCCCCCCC--ccCcccHH----HHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGP--CYKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p--~~~L~t~e----f~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
.+.+.|+|++|... ..++. ..+...-+ .+.- .-..+.|+|.++... |. ......+.+.|.++|..|
T Consensus 133 p~r~VdvVlSDMap-naTGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~V 204 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAP-NATGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNV 204 (232)
T ss_pred CCCcccEEEeccCC-CCcCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhc
Confidence 35789999999873 21121 01111111 1111 236788999998774 32 233467778899999988
Q ss_pred eEEEEecCccC-CceeEEEEecCC
Q 022451 246 VPYSAHIPSFA-DTWGWIMVSIYN 268 (297)
Q Consensus 246 ~~~~~~vp~~~-~~~~~~~as~~~ 268 (297)
+.+. .-.+.. ..-.|++|.+..
T Consensus 205 k~vK-P~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 205 KKVK-PDASRDESAETYLVCLNFK 227 (232)
T ss_pred EeeC-Cccccccccceeeeeeecc
Confidence 7553 111222 223566776554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=60.31 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=82.6
Q ss_pred CCCC-eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHh---ccCCC
Q 022451 101 PNPK-TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKES 175 (297)
Q Consensus 101 ~~~~-~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-~~~l~---~~~~~ 175 (297)
++.. +||+||+|+|.-+.+++++.|..+-.--|.|+....-.+.+....+...-.+-+.+=..+. ..+.. ...+.
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 5999999999999999998888888889999999766666544221100012222222211 12210 12468
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc---CCchHHHHHHHHHHhhCC
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~---~~~~~~~~i~~~l~~~F~ 243 (297)
||+|++--.-+. +| .-.+..+|+. +.+.|++||.|+++. |... ...+..++.-..|++.-|
T Consensus 103 ~D~i~~~N~lHI--~p--~~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 103 FDAIFCINMLHI--SP--WSAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred cceeeehhHHHh--cC--HHHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence 999998755443 22 1124578888 899999999999884 2111 123344455555555433
|
The function of this family is unknown. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0039 Score=54.01 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=93.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD 177 (297)
...+.+||-||..+|++..++....+...|.+||.+|++.+-. +.... +.+|+--+.+||+.--+ .-=+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL---l~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL---LDVAE---KRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH---HHHHH---hCCCceeeecccCCcHHhhhhccccc
Confidence 3568999999999999999999876778899999999886432 22111 23677778899854211 1125699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCc--EEEEecCCCCCc-CCchHHHHHHHHHHhhC-CceeEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIF-SHTEVFSCIYNTLRQVF-KYVVPYSAHIP 253 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG--vl~~~~~~p~~~-~~~~~~~~i~~~l~~~F-~~v~~~~~~vp 253 (297)
+|+.|...|.. .+-+... +..-|+++| ++++...+-.+. ...+.+++..+.|++.+ .-.. ...+.
T Consensus 148 viy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e--~~~Le 216 (231)
T COG1889 148 VIYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE--VVDLE 216 (231)
T ss_pred EEEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE--EeccC
Confidence 99999986541 1234455 688999999 555554332212 23445666666777654 4322 13444
Q ss_pred ccCCceeEEEE
Q 022451 254 SFADTWGWIMV 264 (297)
Q Consensus 254 ~~~~~~~~~~a 264 (297)
+|......+++
T Consensus 217 Pye~DH~~i~~ 227 (231)
T COG1889 217 PYEKDHALIVA 227 (231)
T ss_pred CcccceEEEEE
Confidence 45433444433
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00047 Score=61.28 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii 180 (297)
.+++||.||=.+-.....++.. ..++|+++|||+++++.-++.....+ -.++.+..|.|.-|... .++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence 5899999997776655544544 35799999999999999887765432 23999999999888653 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCc
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (297)
.|++-.. ..+ .-|+.. .-+.|+..|
T Consensus 118 TDPPyT~-----~G~--~LFlsR-gi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTP-----EGL--KLFLSR-GIEALKGEG 142 (243)
T ss_dssp E---SSH-----HHH--HHHHHH-HHHTB-STT
T ss_pred eCCCCCH-----HHH--HHHHHH-HHHHhCCCC
Confidence 9986321 111 136666 467888777
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=62.90 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=71.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhc--cCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELES--RKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~--~~~~y 176 (297)
.+.+||++|||.|.+..-+++..+. -.|.++|.+|..+++.+++-... ..++.-.+-|... -+.. ..+.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999988886555 78999999999999999875433 1344444444321 1222 24678
Q ss_pred eEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++--. +.. .| ... ...+.. +.+.|||||.|+.-.
T Consensus 146 D~it~IFvLSAi--~p-ek~--~~a~~n-l~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAI--HP-EKM--QSVIKN-LRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEecc--Ch-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence 87654321 111 12 121 245677 789999999998874
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00052 Score=63.90 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
-...+|+|+|.|.+++.++.++| +|.+++.|..-+-.++.++. |.|+.+.+|.++- -.+-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEE
Confidence 47899999999999999999764 59999999888887777653 3388888997554 2446688775
Q ss_pred CC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.- .+|.+ ..+ .+|+++ |++.|+|+|.+++-.
T Consensus 244 WiLhdwtD---edc--vkiLkn-C~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 244 WILHDWTD---EDC--VKILKN-CKKSLPPGGKIIVVE 275 (342)
T ss_pred eecccCCh---HHH--HHHHHH-HHHhCCCCCEEEEEe
Confidence 44 23321 122 379999 699999999887764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00052 Score=63.08 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCCeEEEEccchhH----HHHHHHhcC----CCcEEEEEECCHHHHHHHHhhh-hhc---c-------CCC------C--
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHK----TVEKVVMCDIDEEVVEFCKSYL-VVN---K-------EAF------S-- 154 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~----~~~~v~~VEid~~vi~~a~~~f-~~~---~-------~~~------~-- 154 (297)
.+-+|+..||++|- ++..+.+.. ...+|++.|||+.+++.|++-. +.. . ..+ .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35699999999995 333333321 1357999999999999999831 000 0 000 0
Q ss_pred --------CCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 155 --------DPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 155 --------~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..+|++...|..+.-....++||+|++--. -.. .+ -.....++. +.+.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence 134555556543310011367999998422 111 00 113467777 79999999999875
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00091 Score=54.30 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=45.8
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
++|||||.|..+..+++..+..+|+++|.+|.+.+.+++++..+. -++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 799999999999999887666799999999999999999887542 1457777655
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0031 Score=55.19 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=79.3
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
|.||||-=|.++.+|++.....+++++|+++.-++.|+++....+ ...+++++.+|+.+-+.. .+..|.|++.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG-- 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIAG-- 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEEE--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEec--
Confidence 689999999999999998777899999999999999999987543 246999999999988754 23478888863
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.... ...++++. ....++..-.|+++-. . ....+++.+.+.
T Consensus 75 -----MGG~-lI~~ILe~-~~~~~~~~~~lILqP~-----~---~~~~LR~~L~~~ 115 (205)
T PF04816_consen 75 -----MGGE-LIIEILEA-GPEKLSSAKRLILQPN-----T---HAYELRRWLYEN 115 (205)
T ss_dssp -----E-HH-HHHHHHHH-TGGGGTT--EEEEEES-----S----HHHHHHHHHHT
T ss_pred -----CCHH-HHHHHHHh-hHHHhccCCeEEEeCC-----C---ChHHHHHHHHHC
Confidence 2222 34577787 6777777778888721 1 234566666665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=58.97 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---cc----------------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NK---------------------------- 150 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~---~~---------------------------- 150 (297)
.+.+||+=|||.|.++.++++. .-.+.+.|.|--|+-..+--+.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999987 35899999999886543321110 00
Q ss_pred -----CCCCCCCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 151 -----EAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 151 -----~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
......++.+..||..++-... ..+||+|+..-|-.. +..++ ++++. +.++|||||+. +|.+|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni~--~Yi~t-I~~lLkpgG~W-IN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENII--EYIET-IEHLLKPGGYW-INFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHHH--HHHHH-HHHHhccCCEE-EecCC
Confidence 0012346788889977765443 478999987755211 12333 78898 79999999955 68753
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0052 Score=53.75 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCCCCCCeEEEEcchHHH--HhccC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAE--LESRK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~~~rv~~~~~Da~~~--l~~~~ 173 (297)
.+....+|||+|.|....+++...+..+..+||+.+...+.|++..... .......+++++.+|..+. ....-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 4567899999999999877776556778999999999999887643210 0112346788999986432 22111
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
..-|+|+++..-- .+ .|. ..+.. ....|++|-.++.
T Consensus 121 s~AdvVf~Nn~~F---~~--~l~--~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DP--DLN--LALAE-LLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT----H--HHH--HHHHH-HHTTS-TT-EEEE
T ss_pred cCCCEEEEecccc---CH--HHH--HHHHH-HHhcCCCCCEEEE
Confidence 4579999985421 11 121 22333 3467888777654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=59.37 Aligned_cols=112 Identities=21% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCC--------------------------------Cc-------EEEEEECCHHHHHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKT--------------------------------VE-------KVVMCDIDEEVVEFC 142 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------~~-------~v~~VEid~~vi~~a 142 (297)
+...++|==||+|+++.+++.... .. .+.++|+|+.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 346899999999999988876432 01 377999999999999
Q ss_pred HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCC-C--ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG-P--CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 143 ~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~-p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+....+ -.+.+++..+|+..+-. .-+.+|+||+++|=..+-+ . ...||. +|.+. +++.++--+.+++.+
T Consensus 271 k~NA~~AG---v~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY~-~fg~~-lk~~~~~ws~~v~tt 344 (381)
T COG0116 271 KANARAAG---VGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLYR-EFGRT-LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcC---CCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHHH-HHHHH-HHHHhcCCceEEEEc
Confidence 99865433 24679999999876532 2278999999998322111 1 123553 67777 788888877887754
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0052 Score=56.89 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----cCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~~~~y 176 (297)
.++..++|.=+|.|+-+..+++..+..+|+++|.||.+++.|++.+... ..|+++++++..++... ...++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~v 93 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKI 93 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCcc
Confidence 4557899999999999999998654589999999999999999976422 36899999998766432 12579
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.|+-
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99999984
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0034 Score=57.09 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=65.4
Q ss_pred CCCeEEEEccchhH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhh-h-hcc-C------------CCCC--
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYL-V-VNK-E------------AFSD-- 155 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~f-~-~~~-~------------~~~~-- 155 (297)
.+-+|.-.||++|- ++..+.+..+ ..+|++.|||..+++.|++-. + ... . ...+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999994 5555555442 479999999999999998731 1 000 0 0001
Q ss_pred --------CCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 156 --------PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 156 --------~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..|++...|...--. ..+.||+|++-----.. ..-...+.++. ....|+|||+|.+-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF----d~~~q~~il~~-f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF----DEETQERILRR-FADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee----CHHHHHHHHHH-HHHHhCCCCEEEEc
Confidence 123333333211000 23569999985320000 01113456777 78999999999875
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.01 Score=56.65 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=95.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.+++.+|||+++..|+=+.+++.. .....|.+-|.+..-+...+.++...+ -.+..+...|+++|-.. ...+||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCcccc
Confidence 356789999999888766555543 345689999999999999998876543 35677888999877433 234899
Q ss_pred EEEEcCCCCC---CCCCcc-------------CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLADPI---EGGPCY-------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~~~~---~~~p~~-------------~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
-|++|++-.. ...+.. .-+.++.+.. +-+.+++||+|+-.+++- ..+.-+.+++.+-+-
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL~K 389 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYALKK 389 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHHHh
Confidence 9999998211 000100 1123455555 568999999998887642 344556777777778
Q ss_pred CCceeEE
Q 022451 242 FKYVVPY 248 (297)
Q Consensus 242 F~~v~~~ 248 (297)
||++...
T Consensus 390 ~p~~kL~ 396 (460)
T KOG1122|consen 390 RPEVKLV 396 (460)
T ss_pred CCceEec
Confidence 8887543
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=56.75 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=55.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~ 178 (297)
.+..|+|.-||.|+-+.+.+..+ ..|.++|+||.-+..||.+....+- ..|+++++||..+.... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI---~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV---PDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC---CceeEEEechHHHHHHHHhhhhheeee
Confidence 56677886666555554444433 4799999999999999999875542 24999999998765433 3455778
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
++..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 877653
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0059 Score=55.79 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
-.|++|||+|+|.|+.+..+...+ ...++++||.++.++++++.-+..... ...... .. .+... .-.+.|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~---~~~~~~-~~---~~~~~~~~~~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN---NRNAEW-RR---VLYRDFLPFPPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc---cccchh-hh---hhhcccccCCCCc
Confidence 368999999999998776666543 367899999999999999986542210 111111 11 11111 123459
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE-ecCCCCCcCCchHHHHHHHHHHh
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT-QAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~-~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+|++.-.-.. .+ . --..++.+. +.+.+++ +|++ .-+.| ..-+.+..+.+.|.+
T Consensus 105 Lvi~s~~L~E--L~-~-~~r~~lv~~-LW~~~~~--~LVlVEpGt~---~Gf~~i~~aR~~l~~ 158 (274)
T PF09243_consen 105 LVIASYVLNE--LP-S-AARAELVRS-LWNKTAP--VLVLVEPGTP---AGFRRIAEARDQLLE 158 (274)
T ss_pred EEEEehhhhc--CC-c-hHHHHHHHH-HHHhccC--cEEEEcCCCh---HHHHHHHHHHHHHhh
Confidence 9987643111 11 1 112356666 5666665 5544 32332 334455555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0038 Score=60.96 Aligned_cols=106 Identities=18% Similarity=0.318 Sum_probs=76.4
Q ss_pred CCeEEEEccchhHHHHHHHh----cCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 103 PKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~----~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...|+++|+|-|-+....++ ...--++.+||-+|.++-..+.. |.. =+.+|+++..|-|.|-. ..++.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-----W~~~Vtii~~DMR~w~a-p~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-----WDNRVTIISSDMRKWNA-PREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-----hcCeeEEEeccccccCC-chhhcc
Confidence 34577789999988765553 22345789999999998876552 221 14799999999999862 247899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++.+-... + ..=++.|=+.- +.+.|+|+|+.+-..
T Consensus 442 I~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 442 IIVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred chHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence 9999876433 1 12236677777 789999999887553
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=45.11 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=65.2
Q ss_pred EEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccC-CCceEEEEc
Q 022451 106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD 182 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~-~~yD~Ii~D 182 (297)
++++|||+|... .+....+. ..++++|+++.++..++..... . ....+.+..+|.... +.... ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 33333222 3788899999999985554321 1 011167888887652 33333 479999333
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..... . . ....+.. +.+.|+|+|.+++...
T Consensus 127 ~~~~~--~---~--~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHL--L---P--PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhc--C---C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence 32211 0 1 3467777 7899999999887754
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0021 Score=57.16 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=48.9
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-----CCCeEEEEcchHHHHhccCCCceE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+|||.=+|-|.-+..++.. ..+|+++|-+|.+..+.+.-+.......+ -.|++++.+|+.+||+.....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999777777766666554 36899999999999887764431110001 138999999999999866789999
Q ss_pred EEEcCCCCC
Q 022451 179 IIGDLADPI 187 (297)
Q Consensus 179 Ii~D~~~~~ 187 (297)
|.+|+-.|.
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999987543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.038 Score=50.43 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=89.3
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~ 183 (297)
+|+++.||.|++...+.+. +...+.++|+|+..++..+.+++. . ++.+|..+..... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---------~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---------K-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---------C-CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998777764 467789999999999999987642 1 5567766654332 45799999998
Q ss_pred CC-CCC--------CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhhCCceeEEEEec
Q 022451 184 AD-PIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 184 ~~-~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
+= +.+ ..+...| -.++++. + +.++|.=+++=|+ ++... ..+.+..+.+.|.+..=.+.......
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a 145 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEELGYNVYWKLLNA 145 (275)
T ss_pred CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhCCcEEEEEEEEH
Confidence 72 111 0111122 2356665 3 5668886555443 22111 24567777777776532233222222
Q ss_pred CccC----CceeEEEEecCC
Q 022451 253 PSFA----DTWGWIMVSIYN 268 (297)
Q Consensus 253 p~~~----~~~~~~~as~~~ 268 (297)
..|+ ....|++|.+.+
T Consensus 146 ~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 146 SDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred HHcCCCCCCcEEEEEEEeCC
Confidence 2332 124567777655
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0051 Score=60.02 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=74.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC----CC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~----~~ 175 (297)
.+..+-+||+.||+|.++..+++. ..+|.+||++|+.++-|+++-..++ -.+.+++.+-+.+.+..-. ..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCC
Confidence 356688999999999999999874 6899999999999999999866553 4678999996655443311 23
Q ss_pred ce-EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YD-VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD-~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
=+ ++++|++... ....+++. +.+.-++.=.+.+.+
T Consensus 455 ~~~v~iiDPpR~G--------lh~~~ik~-l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDPPRKG--------LHMKVIKA-LRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECCCccc--------ccHHHHHH-HHhccCccceEEEEc
Confidence 34 7788876421 23356666 555554655555554
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0017 Score=62.91 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=82.6
Q ss_pred CCCCeEEEEccchhHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC---CCc
Q 022451 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~---~~y 176 (297)
..+-+||+.=+++|.-+ +++....+..+|++-|.|++.++..+++..++. .+..++...+||...+-... ..|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 45668888767777765 444445678899999999999999999988764 34678999999988775544 789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|=+|++. .+. .|++. +-+.+..||+|++..
T Consensus 185 DvIDLDPyG----s~s------~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG----SPS------PFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC----Ccc------HHHHH-HHHHhhcCCEEEEEe
Confidence 999999884 222 67787 789999999998875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0028 Score=58.42 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch----HHHHhccCCCce
Q 022451 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da----~~~l~~~~~~yD 177 (297)
.-++||||+|..++ +.-..+.+ .-++++.|||+..++.|+++...+.. -..+++++...- ...+....++||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence 46899999998765 33333443 46999999999999999999876621 247898876532 222333457899
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
+.+++++.
T Consensus 180 ftmCNPPF 187 (299)
T PF05971_consen 180 FTMCNPPF 187 (299)
T ss_dssp EEEE----
T ss_pred EEecCCcc
Confidence 99999873
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.018 Score=50.63 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++..++.||||--+.++.++.+..+...++++|+++.-++.|.+++..+. ..++++++.+|+..-+.. ++.+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence 45556999999999999999998788999999999999999999998654 358999999999776653 46799998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.- ....+ -.+++++ -++.|+.-=.++++
T Consensus 91 IAG-------MGG~l-I~~ILee-~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAG-------MGGTL-IREILEE-GKEKLKGVERLILQ 119 (226)
T ss_pred EeC-------CcHHH-HHHHHHH-hhhhhcCcceEEEC
Confidence 863 22233 3478888 78888854567776
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.00093 Score=60.89 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=102.9
Q ss_pred cccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCC
Q 022451 46 LNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKT 125 (297)
Q Consensus 46 ~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~ 125 (297)
...++..+.++++++.|.. +..+.++.+++.....+.+ ..|.+.|+. .-..++|.++|| +|....+.++..
T Consensus 124 kvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----gy~~~~v~l~iG-DG~~fl~~~~~~- 194 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-----GYEGKKVKLLIG-DGFLFLEDLKEN- 194 (337)
T ss_pred eEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc-----ccCCCceEEEec-cHHHHHHHhccC-
Confidence 3458888888999988877 5567888888776655544 345554432 246778988886 888888888653
Q ss_pred CcEEEEEECCHHHHHHHHhh----hhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcCCC-CCCCCCccCccc
Q 022451 126 VEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLAD-PIEGGPCYKLYT 197 (297)
Q Consensus 126 ~~~v~~VEid~~vi~~a~~~----f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~~~-~~~~~p~~~L~t 197 (297)
...|+.+|+|..+...+..| |+....+++...+.+.++|..-+..+ ...+||-++.+..+ ++.+.|....-
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg- 273 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPSG- 273 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCccc-
Confidence 46899999999888877654 55444567778899999987543322 22455555555442 33223311100
Q ss_pred HHHHHHHHcccCCCCcEEEEec
Q 022451 198 KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 198 ~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-.|.. +.. |+|+|-+....
T Consensus 274 ~igf~l-~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 274 RIGFML-CSK-LKPDGKYKTPG 293 (337)
T ss_pred eEEEEE-ecc-cCCCCCccCCC
Confidence 001112 223 99999887654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=53.07 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCCeEEEEccchh--HHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC--eEEEEcchHHH---Hhc--
Q 022451 102 NPKTIFIMGGGEG--STAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--LELVINDARAE---LES-- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G--~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r--v~~~~~Da~~~---l~~-- 171 (297)
--.+.||||||-= ..++++++ ..|..+|..||.||.++..++.-+..+ ++ ..++.+|.++- |..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------PRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC------CCccEEEEeCCCCCHHHHhcCHH
Confidence 4589999999933 34666654 357899999999999999999876533 44 89999998653 321
Q ss_pred c------CCCceEEEEcCCCCC--CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 172 R------KESYDVIIGDLADPI--EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 172 ~------~~~yD~Ii~D~~~~~--~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
. +++.=++++...... ...| .+.++. +...|.||..|++..... -..++..+.+...+.+...
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp------~~iv~~-l~d~lapGS~L~ish~t~--d~~p~~~~~~~~~~~~~~~ 212 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDP------AGIVAR-LRDALAPGSYLAISHATD--DGAPERAEALEAVYAQAGS 212 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTH------HHHHHH-HHCCS-TT-EEEEEEEB---TTSHHHHHHHHHHHHHCCS
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCH------HHHHHH-HHHhCCCCceEEEEecCC--CCCHHHHHHHHHHHHcCCC
Confidence 1 233335555443211 1122 367888 799999999999885432 1233334445555554433
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0094 Score=51.72 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=82.3
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc----cCCCCCCCeEEEEcchHHHHhcc--CCCc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~----~~~~~~~rv~~~~~Da~~~l~~~--~~~y 176 (297)
.-.+.|||||-|+++..+...+|..-|.+.||--.|.+..++..... +.. .-+++.+....+..|+..- ..+.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhccc
Confidence 35689999999999999999999999999999999999998876421 111 1467888889998888652 2334
Q ss_pred eEEEEcCCCCCC--CCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+=++.-.++|.. ......+.+...+.. ..=.|++||++..-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEEe
Confidence 444444444431 111235566667777 577999999987764
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0042 Score=54.21 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCCeEEEEccchhHHHHHHH---hc-CCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHH--HHhc--
Q 022451 101 PNPKTIFIMGGGEGSTAREIL---RH-KTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARA--ELES-- 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~---~~-~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~-- 171 (297)
-+|+.|+++|.-.|+.+...+ +. .+.++|.+||||..-.. .|.+..++ .+|++++.||..+ .+..
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence 478999999998887765443 32 26689999999754432 22322122 3899999999742 2222
Q ss_pred -c--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 -~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
. .....+|+.|+.+.. .+.. .-++. ....+++|+.+++..
T Consensus 105 ~~~~~~~~vlVilDs~H~~-----~hvl--~eL~~-y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTH-----EHVL--AELEA-YAPLVSPGSYLIVED 147 (206)
T ss_dssp SS----SSEEEEESS---------SSHH--HHHHH-HHHT--TT-EEEETS
T ss_pred HhhccCCceEEEECCCccH-----HHHH--HHHHH-hCccCCCCCEEEEEe
Confidence 1 245669999986432 1221 33444 578999999999873
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=51.65 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHH---Hhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAE---LES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~---l~~ 171 (297)
+++..++++|||+|.=++.+++. ....+.+.|||+...++.+.+.+... .-|.+++ +++|-.+- +..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 45568999999999866655542 22467999999999999998887621 1266766 77775443 432
Q ss_pred c--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 172 R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 172 ~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
. .....+|+.--.. . +....--...|++. +++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGSs-i--GNf~~~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSS-I--GNFSRPEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCcc-c--cCCCHHHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1 2335555543221 1 11111223478888 788 999999998865
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=50.79 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCCeEEEEccchhHHHHHHHhc-C-----CCc---EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----
Q 022451 102 NPKTIFIMGGGEGSTAREILRH-K-----TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----- 167 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~-~-----~~~---~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~----- 167 (297)
.-++|.||++..|++.+.+.+. + ... .|++||+-|.+ + -+.|.-+.+|...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 4578999999999988777652 1 112 39999996543 1 2567777777522
Q ss_pred -HHhc-cCCCceEEEEcCCCCCCCCCccCc---cc----HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 168 -ELES-RKESYDVIIGDLADPIEGGPCYKL---YT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 168 -~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L---~t----~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
.++. ..++.|+|++|-.... ++.. .+ .. ...+.. ....|+|||.|+... ...+...-++..|
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDv-TGlH-d~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql 176 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDV-TGLH-DLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQL 176 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCc-cccc-cHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHH
Confidence 2322 2468999999976222 2221 11 01 122232 458999999998763 3344456778889
Q ss_pred HhhCCceeEEEEecCc--cC-CceeEEEEecCCCCCCccc
Q 022451 239 RQVFKYVVPYSAHIPS--FA-DTWGWIMVSIYNPHSHSIL 275 (297)
Q Consensus 239 ~~~F~~v~~~~~~vp~--~~-~~~~~~~as~~~~~~~~i~ 275 (297)
+..|..|..+. |. .+ ..-.|++|....++...++
T Consensus 177 ~~ff~kv~~~K---PrsSR~sSiEaFvvC~~~~pp~g~~P 213 (294)
T KOG1099|consen 177 RKFFKKVTCAK---PRSSRNSSIEAFVVCLGYCPPEGFIP 213 (294)
T ss_pred HHHhhceeeec---CCccccccceeeeeecccCCccCCCC
Confidence 99999987654 32 22 3357899988766655554
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=52.73 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=54.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+.|.+|+|||||.--++.-.....+...+.+.|||..+++....++...+ ++.++.+.|...- ......|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-----~~~~~~v~Dl~~~--~~~~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-----VPHDARVRDLLSD--PPKEPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT------CEEEEEE-TTTS--HTTSEESEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-----CCcceeEeeeecc--CCCCCcchh
Confidence 356899999999998888776666667799999999999999999987653 6788888885332 235678988
Q ss_pred EEc
Q 022451 180 IGD 182 (297)
Q Consensus 180 i~D 182 (297)
++-
T Consensus 176 Lll 178 (251)
T PF07091_consen 176 LLL 178 (251)
T ss_dssp EEE
T ss_pred hHH
Confidence 875
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.017 Score=51.33 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--c
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELES--R 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~ 172 (297)
.++..+||-||++.|+....+... .|..-|.+||.++.. +..|++ .+|+--++.||+.--+- .
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeee
Confidence 367789999999999998887764 466789999998753 444443 36787888998753221 1
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc---CCchHHHHHHHHHHhh-CCceeEE
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQV-FKYVVPY 248 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~---~~~~~~~~i~~~l~~~-F~~v~~~ 248 (297)
-.-.|+||.|.+.|..+ .. -.+ . ++--|++||-+++...+++.. .....++.-.+.|++. +.-..
T Consensus 224 VgmVDvIFaDvaqpdq~----Ri---vaL-N-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~E-- 292 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPDQA----RI---VAL-N-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKE-- 292 (317)
T ss_pred eeeEEEEeccCCCchhh----hh---hhh-h-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchh--
Confidence 23589999998865411 11 111 2 467899999998876544221 1233555555666653 33221
Q ss_pred EEecCccCCceeEEEEe
Q 022451 249 SAHIPSFADTWGWIMVS 265 (297)
Q Consensus 249 ~~~vp~~~~~~~~~~as 265 (297)
...+.+|.....+++..
T Consensus 293 qvtLEP~erdha~VvG~ 309 (317)
T KOG1596|consen 293 QVTLEPFERDHACVVGV 309 (317)
T ss_pred eeccccccCCceEEEEE
Confidence 12344454335565554
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0095 Score=55.22 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=56.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhcc--CCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~--~~~ 175 (297)
.++...+|.=.|.|+.+..+++..+..+++++|.||.+++.|++.+... ++|+.++.++..++ +... -.+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCc
Confidence 4566789988899999999998766699999999999999999877532 47999999886543 3333 258
Q ss_pred ceEEEEcCC
Q 022451 176 YDVIIGDLA 184 (297)
Q Consensus 176 yD~Ii~D~~ 184 (297)
+|.|+.|+-
T Consensus 94 ~dgiL~DLG 102 (310)
T PF01795_consen 94 VDGILFDLG 102 (310)
T ss_dssp EEEEEEE-S
T ss_pred cCEEEEccc
Confidence 999999984
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.029 Score=52.97 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=67.2
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcc-CCCceE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESR-KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-~~~-~~~yD~ 178 (297)
.+.+|+++|+|. |.++..+++..+..+|+++|+++.-+++|+++++.... .++.-+ |....+ ... ...+|+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADV 241 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCE
Confidence 344899999995 55667777877889999999999999999997653210 111111 333333 222 236999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|--.- +...++. +.+.++++|.+++..
T Consensus 242 vie~~G------------~~~~~~~-ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG------------SPPALDQ-ALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC------------CHHHHHH-HHHHhcCCCEEEEEe
Confidence 985532 1245666 678999999998764
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=56.97 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=66.6
Q ss_pred EEcCccccccCChhhHHHHHHHH-HH-hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEE--EEECCHHHHHHHHhh-hh
Q 022451 73 VIDGKLQSAEVDEFIYHESLVHP-AL-LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LV 147 (297)
Q Consensus 73 ~ldg~~q~~~~d~~~y~e~l~~~-~l-~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~a~~~-f~ 147 (297)
|-.|..|... ....|.+.+... ++ .....-+.+||+|||.|+++..++.+. +..+. .-|..+..++.|-+. ++
T Consensus 87 FPgggt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 87 FPGGGTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred eCCCCccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcc
Confidence 3344444442 223466555432 22 123445789999999999999999852 32222 113333344444332 11
Q ss_pred hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 148 ~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.. +- +. +.+-|.-....||+|=+.-. .+|. +...+ ++-+ +.|.|+|||.++.. ++|
T Consensus 165 a~--------~~-~~--~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv~S-~pp 221 (506)
T PF03141_consen 165 AM--------IG-VL--GSQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFVLS-GPP 221 (506)
T ss_pred hh--------hh-hh--ccccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEEec-CCc
Confidence 10 00 00 11123335678998855433 4552 11111 3334 68999999998755 444
|
; GO: 0008168 methyltransferase activity |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.021 Score=50.70 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
....+.+||||.-||+++..+++. +..+|.+||..-.-+.. .+. .|||+.++..-=..++.. ..+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~-----kLR----~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHW-----KLR----NDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCH-----hHh----cCCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999999986 58999999985433221 111 478887766543333422 235789
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+|++|...-. -...+.. +...|+|+|-++.
T Consensus 147 ~~v~DvSFIS---------L~~iLp~-l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFIS---------LKLILPA-LLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehhh---------HHHHHHH-HHHhcCCCceEEE
Confidence 9999975311 1133444 5667777765554
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.034 Score=51.07 Aligned_cols=79 Identities=23% Similarity=0.206 Sum_probs=62.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----cCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~~~~ 175 (297)
.+..-.+|.=.|.|+.++.+++..+ ..+++++|.||.+++.|++.+... ++|++++++....+... .-.+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCc
Confidence 4457788888899999999998654 567999999999999999987533 47999999876554322 2358
Q ss_pred ceEEEEcCC
Q 022451 176 YDVIIGDLA 184 (297)
Q Consensus 176 yD~Ii~D~~ 184 (297)
+|-|+.|+-
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999999984
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.012 Score=48.18 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=46.7
Q ss_pred CCCCeEEEEccchhHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 022451 101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA 165 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da 165 (297)
.++.+|+|+|+|-|.++..++. . +..+|++||.++..++.++++.......+ ..++++..++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccch
Confidence 5688999999999999999887 4 56799999999999999988754321111 23455555543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.051 Score=53.78 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~ 172 (297)
.+..+|.+-.||+|++.....++.. ...+.+.|+++...++|+.++-+++.. . .+.+..+|-..-... .
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~-~~~i~~~dtl~~~~~~~~~~ 261 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--G-DANIRHGDTLSNPKHDDKDD 261 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--c-cccccccccccCCcccccCC
Confidence 3556899999999998766665421 267999999999999999998766421 1 355666664332211 3
Q ss_pred CCCceEEEEcCCCC---CCC--------------C-CccC-cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHH
Q 022451 173 KESYDVIIGDLADP---IEG--------------G-PCYK-LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~---~~~--------------~-p~~~-L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~ 233 (297)
..+||.|+.+++.. |.. + +... --...|++. +...|+|+|..++-. +.++.........
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaivl-~~gvlfr~~~e~~ 339 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIVL-PDGVLFRGGAEKD 339 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEEe-cCCcCcCCCchHH
Confidence 46799999998742 211 0 0001 111568888 789999998555443 2222233233455
Q ss_pred HHHHHHh
Q 022451 234 IYNTLRQ 240 (297)
Q Consensus 234 i~~~l~~ 240 (297)
+.+.+-+
T Consensus 340 IR~~l~~ 346 (489)
T COG0286 340 IRKDLLE 346 (489)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=51.65 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+....|.|+|||.+.++..+-. ..+|...|+-. .+++ +...|... +.-.++..|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence 34456899999999999977542 23566666621 1233 55567532 44456889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+..+.--. ---.+|+.+ +.|.|+|||.|.+-.. .+.-.......+.+.+.
T Consensus 127 VfcLSLMG-------Tn~~~fi~E-A~RvLK~~G~L~IAEV----~SRf~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 127 VFCLSLMG-------TNWPDFIRE-ANRVLKPGGILKIAEV----KSRFENVKQFIKALKKL 176 (219)
T ss_dssp EEES---S-------S-HHHHHHH-HHHHEEEEEEEEEEEE----GGG-S-HHHHHHHHHCT
T ss_pred EEEhhhhC-------CCcHHHHHH-HHheeccCcEEEEEEe----cccCcCHHHHHHHHHHC
Confidence 98876211 112489999 8999999999977642 12222345666666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.044 Score=51.61 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc--CC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH----H--
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----L-- 169 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~----l-- 169 (297)
..+..+|||+++..|+=+.++++. .. ...|.+=|.|+.-+...+.-.... ..+++.+...|+..+ +
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence 467789999999999988777763 11 237999999998887766544322 345565555555332 1
Q ss_pred --hccCCCceEEEEcCC---CCCC-CCC-----------cc--CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchH
Q 022451 170 --ESRKESYDVIIGDLA---DPIE-GGP-----------CY--KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (297)
Q Consensus 170 --~~~~~~yD~Ii~D~~---~~~~-~~p-----------~~--~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~ 230 (297)
......||-|++|.+ |... ..+ .. +......+.. ..+.|++||.++-.+++-+-..+...
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHH
Confidence 112357999999987 2110 011 00 1122345555 46899999999988764321223334
Q ss_pred HHHHHHHHHhhCC
Q 022451 231 FSCIYNTLRQVFK 243 (297)
Q Consensus 231 ~~~i~~~l~~~F~ 243 (297)
.+.+++.....++
T Consensus 308 V~~~L~~~~~~~~ 320 (375)
T KOG2198|consen 308 VQEALQKVGGAVE 320 (375)
T ss_pred HHHHHHHhcCccc
Confidence 4444444444444
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0096 Score=53.52 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCeEEEEccchhHHHHHHHhcC------------CCcEEEEEECCHHHHHHHHhh--hhh------------c-------
Q 022451 103 PKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKSY--LVV------------N------- 149 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~a~~~--f~~------------~------- 149 (297)
.-.|+++|.|+|.....+.+.. ..-+++.+|.+|.....++.. ++. .
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 4467888999998655444321 234678889888655443321 100 0
Q ss_pred cCCC-CCCCeEEEEcchHHHHhccCC---CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~-~~~rv~~~~~Da~~~l~~~~~---~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+ ..-.+.++++|++..+..... ++|+.++|.|.|.. .| .+++.++++. ++++..|||.++..+
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence 0112 234567899999999877655 79999999998863 33 8899999999 899999999998753
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.032 Score=45.77 Aligned_cols=107 Identities=23% Similarity=0.192 Sum_probs=64.7
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcCC-CCCCCC--CccCcccHHHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF 203 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~~-~~~~~~--p~~~L~t~ef~~~ 203 (297)
+|.+.||-+++++.+++.+.... ...|++++.+.=......-+. +.|+++.++- -|..+. ....--|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999887442 125899998876554333334 8999999874 232110 0011234567777
Q ss_pred HHcccCCCCcEEEEec--CCCCCcCCchHHHHHHHHHHhh
Q 022451 204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~--~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.+.|+|||++++-. +++ ...+....+.+.+++.
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~---gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHP---GGKEESEAVEEFLASL 113 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STC---HHHHHHHHHHHHHHTS
T ss_pred -HHHhhccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhC
Confidence 689999999988765 333 1233444555555543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.067 Score=50.25 Aligned_cols=93 Identities=24% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~~~~~y 176 (297)
.+.++|+++|+| .|.++.++++... .+|++++++++-.+.|++.-. -.++. .|..+-++ +.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~~---~~~ 230 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAVK---EIA 230 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHhH---hhC
Confidence 567899999887 4456777777554 899999999999999998521 12222 33333333 349
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|+|+.-.. + .-+.. .-+.|+++|.+++-..+
T Consensus 231 d~ii~tv~-~------------~~~~~-~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P------------ATLEP-SLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h------------hhHHH-HHHHHhcCCEEEEECCC
Confidence 99998754 2 12233 45799999999877544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.07 Score=52.92 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC--------eEEEEcchH----H
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--------LELVINDAR----A 167 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r--------v~~~~~Da~----~ 167 (297)
.++.+|+++|+|.-+ .+...++..+. +|+++|.+++..+.+++. +......+... ++-...|.. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 358999999999544 45666666554 899999999999999984 31100000000 000111110 1
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.+.-+.+|+||.-...|.. +...+++ ++ +-+.++|||+++.-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~--~aP~lit----~~-~v~~mkpGgvIVdvg 285 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGK--PAPKLIT----AE-MVASMKPGSVIVDLA 285 (509)
T ss_pred HHHhccCCCCEEEECCCCCcc--cCcchHH----HH-HHHhcCCCCEEEEEc
Confidence 111112469999987765432 2223333 44 567888999886543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.072 Score=49.46 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD 177 (297)
....+||++|+| .|..+...++..+..+|.++|+++.-+++||+ |+...- ....+-. ..++.++.++.. ...+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence 567899999999 45566667777788999999999999999999 653310 0011111 223444444332 35588
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.|--.-. . .-++. .-..|+.+|.+++-
T Consensus 245 ~~~dCsG~----~--------~~~~a-ai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 245 VTFDCSGA----E--------VTIRA-AIKATRSGGTVVLV 272 (354)
T ss_pred eEEEccCc----h--------HHHHH-HHHHhccCCEEEEe
Confidence 88754321 1 12233 45789999996544
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.09 Score=46.14 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=66.2
Q ss_pred CCCCeEEEEccchhHHHHHHH--hcCCCcEEEEEECCHHHHHHHHhhhhhccC---------------------------
Q 022451 101 PNPKTIFIMGGGEGSTAREIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------------------------- 151 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~f~~~~~--------------------------- 151 (297)
..|-.+-|-+||+|.++..+. .......|.+-|||++++++|++++.+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567789999999999865443 333467899999999999999998753210
Q ss_pred ----------CC-CCCCeEEEEcchHHHHh----ccCCCceEEEEcCCC----CCCC-CCccCcccHHHHHHHHcccCCC
Q 022451 152 ----------AF-SDPRLELVINDARAELE----SRKESYDVIIGDLAD----PIEG-GPCYKLYTKSFYEFVVKPRLNP 211 (297)
Q Consensus 152 ----------~~-~~~rv~~~~~Da~~~l~----~~~~~yD~Ii~D~~~----~~~~-~p~~~L~t~ef~~~~~~~~L~p 211 (297)
.. ...-..+...|.++.-. ......|+|+.|++- .|.. .+ .--...+++. +...|-+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~--~~p~~~ml~~-l~~vLp~ 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS--GGPVAQMLNS-LAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HHHHHHHHHH-HHCCS-T
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC--CCcHHHHHHH-HHhhCCC
Confidence 00 12336688888766421 223446999999982 3432 11 1123568888 8999977
Q ss_pred CcEEEEe
Q 022451 212 EGIFVTQ 218 (297)
Q Consensus 212 gGvl~~~ 218 (297)
++++++.
T Consensus 207 ~sVV~v~ 213 (246)
T PF11599_consen 207 RSVVAVS 213 (246)
T ss_dssp T-EEEEE
T ss_pred CcEEEEe
Confidence 7888873
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.041 Score=49.57 Aligned_cols=86 Identities=24% Similarity=0.247 Sum_probs=57.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+...-|.|+|||.+-++.. . ...|...|+- ..+-+++..|.+. +.-.++..|+++
T Consensus 179 ~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~-------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS---E--RHKVHSFDLV-------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhhc---c--ccceeeeeee-------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4455688899999988861 1 2345555551 1223455667665 555678899988
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+.-- ...+ .+|+.+ +.+.|++||.+-+-.
T Consensus 234 ~CLSLM-----gtn~--~df~kE-a~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLM-----GTNL--ADFIKE-ANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhh-----cccH--HHHHHH-HHHHhccCceEEEEe
Confidence 877521 1133 389999 899999999987654
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.034 Score=56.28 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=65.0
Q ss_pred eEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCC------CCCeEEEEcchHHHHhcc--
Q 022451 105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------DPRLELVINDARAELESR-- 172 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------~~rv~~~~~Da~~~l~~~-- 172 (297)
.|+++|+|=|-+...+++. .-..+|.+||-||..+...+.... +...+. +.+|+++..|.|.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence 4899999999987665542 223589999999664433333221 111121 467999999999983211
Q ss_pred --------CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCC----CcE
Q 022451 173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI 214 (297)
Q Consensus 173 --------~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p----gGv 214 (297)
-+++|+||+.+-..+. .+.| +.|=+.- +.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFG---DNEL-SPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLG---DNEL-SPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccc---cccC-CHHHHHH-HHHhhhhhcccccc
Confidence 1379999998764331 1222 4566666 5667765 776
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.0035 Score=54.55 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=63.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..|.++||||+|+|-++..+..++ .+|.+.|++..|....++. +.+++. ..++++ .+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHH
Confidence 457899999999999999888764 6799999999998876652 222222 234553 456899986
Q ss_pred Ec-CCCCCCCCCccCcccHHHHHHHHcccCCC-CcEEEEe
Q 022451 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVTQ 218 (297)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~p-gGvl~~~ 218 (297)
+- +-|-. ..| ...++. ++.+|+| +|..++.
T Consensus 175 clNlLDRc-~~p------~kLL~D-i~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEEE
Confidence 53 21211 022 156677 7889999 8866544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.025 Score=47.48 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=73.1
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.+++||++|+|--++ +..++...+...|...|-+++.++-.++-...+.. ..-.+..+..-+-... .+....+||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEE
Confidence 358899999984444 45555556788999999999999988876433210 0112222222211111 11234589999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+..--- ...-+.....+. ++..|+|.|.-.+. +| ...+.++...+....+
T Consensus 108 laADCl------FfdE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 108 LAADCL------FFDEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTV 157 (201)
T ss_pred Eeccch------hHHHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhc
Confidence 874210 001122344555 79999999986554 34 3455566665555544
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.1 Score=48.65 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.++||++|+| .|..+.++++..+..+|++++.+++-.+.++++ +... . +.....|..+.+.. ...+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~-v-----i~~~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK-L-----VNPQNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE-E-----ecCCcccHHHHhcc-CCCCCEEE
Confidence 46899999875 334456667766666899999999999999884 3210 0 00011223333322 24589887
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-. .. .+ ..++. +.+.|+++|.++.-.
T Consensus 241 d~-~G----~~-------~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EV-SG----HP-------SSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred EC-CC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 43 31 11 34455 567899999998654
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.23 Score=47.28 Aligned_cols=111 Identities=19% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l~~--~~~~y 176 (297)
.+..+||++|+|+ |..+.++++..+..+|++++.+++..+.++++.+. ..+.....| ..+.+.. ..+.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567899999887 77788888876656799999999999999986421 111122221 3333322 22469
Q ss_pred eEEEEcCCCCCCCCCccCc---------ccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKL---------YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L---------~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+--........+...+ -+...++. +.++|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 9887643211000000000 12245566 678999999997653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.044 Score=50.22 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCC--C-CCCccC-------cccHHHHHHHHcccCCCCcEEEEecC
Q 022451 155 DPRLELVINDARAELES-RKESYDVIIGDLADPI--E-GGPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 155 ~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~--~-~~p~~~-------L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.+++++|+.++++. .+++||+|++|++-.. . ...... -+-.+++.+ +.++|+|||.+++...
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 35568999999998865 3578999999987311 0 011000 012467788 7999999999998753
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.026 Score=48.79 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++||++|.|+|..+....+. +...|...|++|..+...+-+...++ -.+.+...|.. - ++..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~---g-~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLI---G-SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeecccc---C-CCcceeEEEe
Confidence 4799999999999998888875 57889999999998888877665543 45778888753 2 5678999875
Q ss_pred -cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 -D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|.+-.. . .-...+. .+..|+..|.-++-
T Consensus 149 gDlfy~~--~-----~a~~l~~--~~~~l~~~g~~vlv 177 (218)
T COG3897 149 GDLFYNH--T-----EADRLIP--WKDRLAEAGAAVLV 177 (218)
T ss_pred eceecCc--h-----HHHHHHH--HHHHHHhCCCEEEE
Confidence 444111 0 0112222 35677777876663
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.27 Score=45.60 Aligned_cols=98 Identities=20% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+.+|.+||+|. |.-+..++-.. .+.|+.+|+|.+-++.....|. .|++.+......+- ..-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~ie-e~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIE-EAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHH-HHhhhccEEE
Confidence 467899999874 44444444333 5789999999988887776553 56777777765543 3346799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...--|....| .|.+++ +-+.++||++++
T Consensus 237 gaVLIpgakaP--kLvt~e-----~vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKAP--KLVTRE-----MVKQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCCc--eehhHH-----HHHhcCCCcEEE
Confidence 87665553333 676665 456789999886
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.089 Score=46.73 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=41.8
Q ss_pred eEEEEcchHHHHhc-cCCCceEEEEcCCCCC--CC--C-Cc-cC---cccHHHHHHHHcccCCCCcEEEEec
Q 022451 158 LELVINDARAELES-RKESYDVIIGDLADPI--EG--G-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 158 v~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~--~~--~-p~-~~---L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+++.+|+.+.++. .+++.|+|+.|+|=.. .. + .. .. -+..+++++ +.++|+|||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 36899999999876 4688999999987311 00 0 00 01 122456777 689999999998764
|
|
| >PF14314 Methyltrans_Mon: Virus-capping methyltransferase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=52.32 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=90.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEE---EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc--------h----
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--------A---- 165 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D--------a---- 165 (297)
..+..+|..|=|+|+++..+++..|..++. ..|++..++.-+.-.-+..-....+.+-+++..| .
T Consensus 321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~ 400 (675)
T PF14314_consen 321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE 400 (675)
T ss_pred CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence 456789999999999999999988777776 4566555443322111100001112233333322 1
Q ss_pred -HHHHh----ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 166 -~~~l~----~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
..|.. +.+-++|+|++|.-...... ..... ..+...+...|.++|.|+..+..... ...-..++..+.+
T Consensus 401 TW~YF~~l~~~~~~~idLiv~DmEV~d~~~--~~kIe-~~l~~~~~~ll~~~gtLIfKTYlt~l---~~~~~~il~~lg~ 474 (675)
T PF14314_consen 401 TWKYFVSLKKQHNLSIDLIVMDMEVRDDSI--IRKIE-DNLRDYVHSLLEEPGTLIFKTYLTRL---LSPDYNILDLLGR 474 (675)
T ss_pred HHHHHHHHHhhcCCcccEEEEeceecChHH--HHHHH-HHHHHHHHHhcCCCcEEEEehhHhhh---hcchhhHHHHHHh
Confidence 12222 23468999999985321100 01111 12222245788999999988732211 1112367888999
Q ss_pred hCCceeEEEEecCccCCceeEEEEecCC
Q 022451 241 VFKYVVPYSAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 241 ~F~~v~~~~~~vp~~~~~~~~~~as~~~ 268 (297)
.|+.|..+.+...+....--++++.+..
T Consensus 475 ~F~~V~l~qT~~SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 475 YFKSVELVQTQFSSSFTSEVYLVFQKLK 502 (675)
T ss_pred hcCceEEEECCCCCCCceEEEEEEeccc
Confidence 9999998876665533223456665443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.071 Score=48.49 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=55.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+++|+++|=-+-.....++.. -..+|.+||||+..+..-.+..... .-.+++.+.-|.|+-+.. -..+||+++
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 4688999994433333333333 3579999999999999877765432 235688888898876654 357899999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
.|++.
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 99874
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.26 Score=48.11 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=72.8
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
-++|.+|||.--+...+.+. +...|+.+|+|+.+++.....-. . ..+-.++...|..... -.++.||+|+.=.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-~----~~~~~~~~~~d~~~l~-fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-K----ERPEMQMVEMDMDQLV-FEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-c----CCcceEEEEecchhcc-CCCcceeEEEecC
Confidence 38999999999888888775 46789999999999998776432 1 3467888888876533 3567899887644
Q ss_pred C-CCCCCCCccCcc----cHHHHHHHHcccCCCCcEEEEec
Q 022451 184 A-DPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 184 ~-~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ |..... ...++ -...+.. +.+.|++||.++.-+
T Consensus 123 tlDal~~d-e~a~~~~~~v~~~~~e-Vsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFED-EDALLNTAHVSNMLDE-VSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCC-chhhhhhHHhhHHHhh-HHHHhccCCEEEEEE
Confidence 3 211111 11122 2235566 689999999876544
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=46.02 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 022451 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (297)
Q Consensus 86 ~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~~~rv~~~ 161 (297)
..|.+-+-++|.....+.++||++|+|.-+.- ..+++. .++|++| |+++++.++++. ++++++
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~-----------~~i~~~ 74 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKY-----------GNLKLI 74 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhC-----------CCEEEE
Confidence 45665555566666677899999999877664 344443 4677777 888888776552 467777
Q ss_pred EcchHHHHhccCCCceEEEEcCCC
Q 022451 162 INDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 162 ~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
..+...- .-..+++|+....+
T Consensus 75 ~r~~~~~---dl~g~~LViaATdD 95 (223)
T PRK05562 75 KGNYDKE---FIKDKHLIVIATDD 95 (223)
T ss_pred eCCCChH---HhCCCcEEEECCCC
Confidence 6543211 11357888876543
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.68 Score=42.40 Aligned_cols=148 Identities=20% Similarity=0.231 Sum_probs=87.6
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEEEcC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii~D~ 183 (297)
++++|-+|.|++..-+.+. +...+.++|+|+...+.-+.+|+ .+..+|..+.-...-. ..|+|+..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 6899999999988777765 35678999999999999998863 6778887665422111 599999988
Q ss_pred C-CCCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhhCCceeEEEEec
Q 022451 184 A-DPIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 184 ~-~~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
+ .+.+ . .+...|+ .++++. + +.++|.-+++=|+. +... ....+..+...|.+.-=.+.......
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~--~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVP--GLLSSKNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEG--GGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccc--eeeccccccccccccccccccceeehhccccH
Confidence 7 2221 1 1112333 356665 3 57889887776652 2111 22457777788876421233222222
Q ss_pred CccCC----ceeEEEEecCCC
Q 022451 253 PSFAD----TWGWIMVSIYNP 269 (297)
Q Consensus 253 p~~~~----~~~~~~as~~~~ 269 (297)
..|+- ..-|++|.+.+.
T Consensus 145 ~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 145 ADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp GGGTSSBE-EEEEEEEEEGGG
T ss_pred hhCCCCCceeeEEEEEECCCC
Confidence 33431 245677777654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.55 Score=44.78 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=55.5
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+.+|+++|+| .|..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+. +.+.+.-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~-~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNA-YEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCH-HHHHHHHccCCEEE
Confidence 56789999998 3444455555444 4799999998877665544321 111112221 22222224689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
....-+....| .+.+.+.++ .++++++++
T Consensus 236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence 87543321122 466665543 457777665
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.23 Score=40.09 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-..++|++||++-|..+.+++-. ++.+|.++|.+|...+..++....+.-. | .... .+ +| ...=+.||+-.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~--D-K~v~-~~---eW-~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNIC--D-KAVM-KG---EW-NGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheee--e-ceee-cc---cc-cccCCCcceEE
Confidence 46899999999999999888864 6889999999999999999876543110 1 1100 01 11 12236799999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
+|.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9975
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.7 Score=38.26 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEccchh----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 89 HESLVHPALLHHPNPKTIFIMGGGEG----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 89 ~e~l~~~~l~~~~~~~~VL~iG~G~G----~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
.|.+. +|..-.+.+-+++..+++| +++..++.+....++++|-.|++-....++.+.-.+ ..+.++++++|
T Consensus 30 aEfIS--AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFIS--ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGE 104 (218)
T ss_pred HHHHH--HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecC
Confidence 34443 3434456778888865544 344555555557789999999998888887765332 12457999998
Q ss_pred hH-HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 165 AR-AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 165 a~-~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.. +.+.. -...|++++|.-.. . +..++|+. + .++|.|.+++-
T Consensus 105 ~~e~~~~~-~~~iDF~vVDc~~~-------d-~~~~vl~~-~--~~~~~GaVVV~ 147 (218)
T PF07279_consen 105 APEEVMPG-LKGIDFVVVDCKRE-------D-FAARVLRA-A--KLSPRGAVVVC 147 (218)
T ss_pred CHHHHHhh-ccCCCEEEEeCCch-------h-HHHHHHHH-h--ccCCCceEEEE
Confidence 65 45544 36799999997421 1 12355665 3 37777766554
|
The function of this family is unknown. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.9 Score=39.81 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=54.8
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +. ... ...+..+.+ +..|+|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 5899999985 34555555542224899999999988777652 11 011 122322333 35899999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
..+... ..++++. +...++++.+++
T Consensus 73 avp~~~---------~~~v~~~-l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVGA---------SGAVAAE-IAPHLKPGAIVT 97 (307)
T ss_pred CCCHHH---------HHHHHHH-HHhhCCCCCEEE
Confidence 875321 2456666 677888887664
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.12 Score=48.57 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh---hhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~---~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
-.|+++||+|.|.|..+..+-.. +...+++.+|.+|.+-++.-. +..... .+-|..=+..| +.-+. ..+.|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~d-Rl~lp-~ad~y 186 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTED-RLSLP-AADLY 186 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchh-ccCCC-cccee
Confidence 35889999999988877666654 445689999999987665433 221111 11122212222 11121 23568
Q ss_pred eEEEEc-CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|++- ---|. +....++ ..++. +...++|||.|++-.
T Consensus 187 tl~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lVivE 225 (484)
T COG5459 187 TLAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIVE 225 (484)
T ss_pred ehhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEEe
Confidence 876653 21121 1111222 36677 789999999988764
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.72 Score=41.64 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCCCCeEEEEccchhH--H--HHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 100 HPNPKTIFIMGGGEGS--T--AREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~--~--~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
.|..-+||-+|+|+-- . +..+.+.. ..+.++-.|+++-+ . +--..+.+|.+.+. .+.
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------S-Da~~~~~~Dc~t~~--~~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------S-DADQSIVGDCRTYM--PPD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSSEEEES-GGGEE--ESS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------c-ccCCceeccccccC--CCC
Confidence 3667899999987421 1 22233333 34455556664322 1 22356789988874 467
Q ss_pred CceEEEEcCCCCCCCCC-ccCcccHHHHHH---HHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEE
Q 022451 175 SYDVIIGDLADPIEGGP-CYKLYTKSFYEF---VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p-~~~L~t~ef~~~---~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (297)
++|+||+|.+++....- ....-...||.. ++++.|+-||-+++...-.. | + .++.+ +.+.|.....|-+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S-w-~----~~Lye-l~~~F~~wt~FcT 193 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS-W-N----AQLYE-LMGYFSWWTCFCT 193 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--------HHHHH-HHTTEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc-c-c----HHHHH-HHhhcccEEEEec
Confidence 89999999997542110 001111123332 25799999999998864211 2 1 23333 4567888888877
Q ss_pred ecCccCCceeEEEEec
Q 022451 251 HIPSFADTWGWIMVSI 266 (297)
Q Consensus 251 ~vp~~~~~~~~~~as~ 266 (297)
.+.+... -.|+++..
T Consensus 194 ~VNtSSS-EaFLigiN 208 (299)
T PF06460_consen 194 AVNTSSS-EAFLIGIN 208 (299)
T ss_dssp GGGTTSS--EEEEEEE
T ss_pred ccCcccc-ceeEEeee
Confidence 6654322 35555543
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.078 Score=46.74 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
..-|..||.|.|++++.++.. +..++++||+|+..+.-.+---.. .+.+..+|++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence 456889999999999999985 578999999999988765532221 245889999998654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.25 Score=42.58 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=35.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
...++.-|||--+|+|+++.++.+. ..+..++|+++..+++|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3466788999999999999999986 4689999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.99 Score=44.89 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--------CCCeEEEEcchHH----H
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--------~~rv~~~~~Da~~----~ 168 (297)
++.+|+++|+|.-+ .+..+++..+ ..|+++|.++...+.+++. +......+ +.-.+....|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 57899999998554 4455555443 5699999999999988873 32100000 0001111111111 1
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+.+.-+.+|+||.-..-|. .+...|.+++. -+.++||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~em-----v~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEM-----VDSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHH-----HhhCCCCCEEE
Confidence 2222356999988775444 23336777664 34566776654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.4 Score=41.82 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred eEEEEccchhHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-------CCCeEEEEcchHHHHhccCC
Q 022451 105 TIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRKE 174 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-------~~rv~~~~~Da~~~l~~~~~ 174 (297)
+|.+||+|-.+++.. +++.....+|+++|+|++.++..++-.. .....++ ..+++ ...|..+.+ .
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~i----~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKHV----A 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHHH----h
Confidence 689999996665433 4443224679999999999998776321 1100000 00111 111111111 3
Q ss_pred CceEEEEcCCCCCCC-C-----CccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 175 SYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~-~-----p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
.-|+||+..+.|... + .+..-+-.+..+. +.+.|+++-++++.+..|
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp 130 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP 130 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence 478888876655421 0 1111122345555 578888877777665433
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.9 Score=38.85 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+.++||++|+| .|.++.++++..+..+|++++.+++-.+.++++ +... .. +. .+..+.+.. ....+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~-~i-~~------~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GATA-LA-EP------EVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCcE-ec-Cc------hhhHHHHHHHhCCCCCC
Confidence 356799999875 333456666666555699999999998888874 2110 00 11 111122221 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+--... + ..++. +.+.|+++|.++...
T Consensus 190 ~vid~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGA-----T-------AAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCC-----h-------HHHHH-HHHHhcCCCEEEEec
Confidence 88743211 1 33455 568899999998654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.31 Score=46.85 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=56.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r-v~~~~~Da~~~l~~ 171 (297)
..+.-|.|+.||.|-.+.-+++- .++|++-|++|++++..+.+.+++.- +|. ++++..||..|+++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHHhhc
Confidence 56778999999999998887764 48999999999999999999887752 454 99999999999964
|
|
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.22 Score=41.10 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCC
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKE 174 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~ 174 (297)
....-+..||++|.|.|-+=..+.+..|..+|.+.|-- .+.|=.- --|.-.++.+|+++.+.. ...
T Consensus 24 ~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~------l~~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~ 92 (160)
T PF12692_consen 24 QVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA------LACHPSS-----TPPEEDLILGDIRETLPALARFGA 92 (160)
T ss_dssp HTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S
T ss_pred HhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee------cccCCCC-----CCchHheeeccHHHHhHHHHhcCC
Confidence 34455688999999999999888888889999999973 1222111 113446899999988765 233
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+.-++=.|.-... +.....+...+.-.+..+|.|||+++-
T Consensus 93 ~a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 93 GAALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 4445555543221 112232333444346799999998863
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.46 Score=43.40 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=62.5
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~~ 168 (297)
++|.+||+| ++.++..+++. ..+|+++|.|++.++.++++.... ...... .+++ ...|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh
Confidence 579999998 44566666654 357999999999999887653210 000000 1222 22332222
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+ +..|+|+...++.. -...++|.. +.+.++|+.++++++.
T Consensus 79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 2 45799998876421 113467777 6888999888878763
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.66 Score=42.66 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++||++|+| -|.++.++++..+...|.++|.+++-++.|+++... ++. .+ ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i------~~~-----~~-------~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL------DPE-----KD-------PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc------Chh-----hc-------cCCCCCEE
Confidence 346789999865 455667777776666788889998877776653111 110 00 13468988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ |... .+ ..++. +.+.|+++|.+++-.
T Consensus 205 i-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DASG----DP-------SLIDT-LVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECCC----CH-------HHHHH-HHHhhhcCcEEEEEe
Confidence 7 4331 11 34455 568999999998653
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.36 Score=44.21 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=41.4
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
...++.-|||--+|+|+++.++.+. ..+..++|+|++.+++|++.+.
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 3467888999999999999998886 4789999999999999999874
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.6 Score=40.80 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=79.7
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-C-CceEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-~-~yD~Ii 180 (297)
..++++|-+|.|++..-+... +..-+.++|+||..++.-+.+|+. ..++..|..++....- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 357999988888887666654 356788999999999999987742 3566677766544322 2 789999
Q ss_pred EcCCC-CCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCC-chHHHHHHHHHHhh
Q 022451 181 GDLAD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~-~~~~~~i~~~l~~~ 241 (297)
..++= +.+ + .+-..| ..+|.+. -..++|. ++++. +.|+.... ...++.+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P~-~fv~E-NV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRPK-FFVLE-NVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCCC-EEEEe-cCchHHhcCchHHHHHHHHHHHc
Confidence 98872 221 1 122233 4577776 3688883 33333 33432222 34677778888776
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.85 Score=42.63 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..+.+||++|+|+ |.++.++++..+. +|++++. ++.-.+.+++. +... +.....|..+ .. ....+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~~-------v~~~~~~~~~-~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GATY-------VNSSKTPVAE-VK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCEE-------ecCCccchhh-hh-hcCCC
Confidence 3578999998763 4456677776554 7999986 67788888764 2110 1001112111 11 23468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+||--.. .+ ..+.. ..+.|+++|.+++..
T Consensus 240 d~vid~~g-----~~-------~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATG-----VP-------PLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcC-----CH-------HHHHH-HHHHccCCcEEEEEe
Confidence 98875432 11 34555 568999999987654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.6 Score=40.09 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=68.8
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|+++|+| +|.+++.+.+......|++.|.+....+.+.+. +.. +.. ..+ .........|+||+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhhcccCCEEEE
Confidence 579999988 677778777765566788888888887777642 111 110 011 11122356899999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
..|-. .+.+++++ +...|++|-+++ -.++ . -..++..+++..+.
T Consensus 71 avPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S-----~---K~~v~~a~~~~~~~ 114 (279)
T COG0287 71 AVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGS-----V---KSSVVEAMEKYLPG 114 (279)
T ss_pred eccHH---------HHHHHHHH-hcccCCCCCEEE-eccc-----c---cHHHHHHHHHhccC
Confidence 87522 25588888 778899887764 3322 1 14566677766654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=92.25 E-value=4.8 Score=33.98 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=62.5
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
-.+++|.+||+|. |......++-+ ..+|.++|.++.....+... .+ ...+..+.+. +.|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence 3578999999973 33333333334 46999999999876622221 12 2235555554 48999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++.++... . ...+++.++|+. +++|. +++|+.- ...-...++++.+++
T Consensus 96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga-~lvN~aR----G~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGA-VLVNVAR----GELVDEDALLDALES 143 (178)
T ss_dssp EE-SSSST--T-TTTSBSHHHHHT-----STTTE-EEEESSS----GGGB-HHHHHHHHHT
T ss_pred hhhhcccc--c-cceeeeeeeeec-----cccce-EEEeccc----hhhhhhhHHHHHHhh
Confidence 99987422 1 247888887665 45555 5578641 112233567777765
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=1 Score=41.83 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.++++||+.|+|+ |..+.++++..+...|++++.+++-.+.++++ +... . +.....+..+..+. ....+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~~-~-----i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAMQ-T-----FNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCce-E-----ecCcccCHHHHHHHhcCCCCCe
Confidence 4578999998753 33445566666555689999999988888763 2110 0 11111121222221 2346886
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++|... .+ ..+.. ..+.|+++|.+++-.
T Consensus 232 ~v~d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG----VP-------QTVEL-AIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 7777542 11 34455 568899999988653
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.84 Score=39.61 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+. +..|.+ .+..+++.+|-|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCE
Confidence 567899999984 443 444444 4678999999983
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.87 E-value=1 Score=42.42 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=59.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
....+||++|+|. |.++.++++..+..+|++++.++.-.+.++++ +.. .-+.....|..+.+.. ....+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCE
Confidence 4568999998653 44556667766555799999999999999864 211 0011111233333332 2236898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-.... + +.++. +.+.|+++|.++...
T Consensus 263 vid~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFEMAGS-----V-------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EEECCCC-----h-------HHHHH-HHHHHhcCCEEEEEc
Confidence 8843211 1 33455 567899999987653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=2.7 Score=40.75 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=58.3
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----------
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----------- 170 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~----------- 170 (297)
++|.+||+|--+ ++..+++. ..+|+++|+|++.++..++-. +.+...+..+.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 579999998433 44555554 368999999999988644321 1111111111111
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
...+..|+||+..+.|........+ +-.+..+. +.+.|++|-+++..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 0113579999998865321111122 22234566 6788888877776654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=91.72 E-value=6.7 Score=37.97 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=61.5
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++|+++|+|.=+ .....++.. ..+|+++|.||.-...|+.. + .++. +..+.+ +..|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence 468899999998643 334444444 45899999999654444431 1 1111 222223 347998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
+.-. +. ..+++.+ ....+++|++++ |.+....-.+.+.+.+....-+.+-+.+..|.
T Consensus 255 ItaT------G~-~~vI~~~-----~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 255 ITAT------GN-KDVIRGE-----HFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred EECC------CC-HHHHHHH-----HHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 7632 11 1222222 346788888775 55433221233333333333334556666554
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.5 Score=39.49 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~ 183 (297)
|..=.|+=.+++.+++. ..+...+|+.|.-.+..+++|.. +++++++..|+.+-+.. +..+==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 44445777788888864 57999999999999999988753 47999999999987765 345667999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
+-.. +...---.+.+.. +.++- +.|+++++- | ....+..+.+.+.+.+. .+.+..
T Consensus 134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l~ 189 (245)
T PF04378_consen 134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVLR 189 (245)
T ss_dssp ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-EE
T ss_pred CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeEE
Confidence 5221 1111001122222 12222 579998885 3 34555667788888765 444433
|
; PDB: 2OO3_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.49 Score=44.04 Aligned_cols=120 Identities=14% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA- 184 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~- 184 (297)
|+++-||.|++..-+.+. +..-+.++|+|+...+..+.+|+ . .++.+|..+.-...-...|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~---------~-~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG---------N-KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC---------C-CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 578888888888776654 35567789999999999988763 1 34567876654322346899999877
Q ss_pred CCCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--CCchHHHHHHHHHHhh
Q 022451 185 DPIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV 241 (297)
Q Consensus 185 ~~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--~~~~~~~~i~~~l~~~ 241 (297)
.+.+ . .+...| -.++++. + +.++|.=+++=|+ |+.. ...+.+..+++.|++.
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~ 131 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL 131 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence 2221 1 111122 2456665 3 5678875554443 2211 1234566777777654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.6 Score=40.03 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=60.4
Q ss_pred CCCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...++|+++|+|.=+. ....++..+ .+|+++|+||.-...+... + .++. +..+.+ +..|+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVV 271 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIF 271 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEE
Confidence 3678999999985332 333344443 5899999998765444331 1 1111 222333 358998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
+... +. ...++. . ..+.+++|+++ +|.+..+.-.+...+..+....+++-|++.-|.
T Consensus 272 I~aT------G~-~~vI~~----~-~~~~mK~Gail-iNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~ 328 (425)
T PRK05476 272 VTAT------GN-KDVITA----E-HMEAMKDGAIL-ANIGHFDNEIDVAALEELAVKWREIKPQVDEYT 328 (425)
T ss_pred EECC------CC-HHHHHH----H-HHhcCCCCCEE-EEcCCCCCccChHHHhhcCcceeecCCCceEEE
Confidence 7642 11 122222 2 45678888877 465543222222222222112334456665554
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.44 Score=40.02 Aligned_cols=104 Identities=15% Similarity=0.206 Sum_probs=60.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhccCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~-~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.++++++|..-=-+-..++++ +..+|..||-++--++ .. | .+|+. +...|...-.+...++||++.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~--------~dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F--------RDRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c--------ccccccccHHHHHHHHHHhhccchhhhe
Confidence 578999998755555555555 5788999998763221 11 0 12332 2233333222334577998766
Q ss_pred cCC-CCC----CCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLA-DPI----EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~-~~~----~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-.. ++. .+.|....-+..-+.. +++.||+||.|.+-.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence 543 221 1223333344566777 799999999887664
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.35 Score=46.78 Aligned_cols=54 Identities=15% Similarity=0.360 Sum_probs=43.0
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~ 162 (297)
.||+||.|+|.+...+.+.. ...|+++|.-..|.+.|++-...++ -.++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng---~SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNG---MSDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCC---Cccceeeec
Confidence 57999999999999888864 6789999999999999999765443 134566554
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.85 Score=42.96 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=24.9
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
..++||++|+|+ |+ ++..|.+ .+..+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 467899999984 33 3444444 4678999999985
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.59 Score=39.25 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-C--CCCCeEEEEcchHHH---------
Q 022451 102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE--------- 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~--~~~rv~~~~~Da~~~--------- 168 (297)
+|.+|+++|.|.- .-+.+++... ..+++..|..+...+..+..+...-.. . ...+-. -|-..|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 5789999999844 3456666554 468999999999888777654321000 0 000001 111111
Q ss_pred -HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 169 -l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+.+.-..+|+|+....-+.. ....|++++-.+. |+|+-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~--~~P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGK--RAPRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTS--S---SBEHHHHHT-----SSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCC--CCCEEEEhHHhhc-----cCCCceEE
Confidence 11112568999986543331 2347888875444 55655554
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.4 Score=41.36 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD 177 (297)
.+..+||+.|+|+ |..+.++++..+..+|++++.++.-.+.++++ +.. .-+.....|..+.+.. . ...+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GAT------HTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4578999998753 34456666766555799999999999988764 211 1111122344444433 2 24589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+ |... .+ +.++. ..+.|+++|.+++-.
T Consensus 248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 887 4331 11 33455 467899999998654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.5 Score=40.45 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=58.5
Q ss_pred CeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+||+.|+ |.|..+.++++..+..+|++++.+++-.+.+++.++.. .-+.....|..+.+.. ..+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 46667777887765447999999988888777644321 1111111233333432 235699888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|... . ..+.. +.++|+++|.++..
T Consensus 230 -d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----G--------EISDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----c--------HHHHH-HHHHhccCCEEEEE
Confidence 4321 1 11344 56889999998864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.6 Score=40.55 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=60.1
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.+++||+.|+| .|..+.++++..+...+++++.+++-.+.++++ +.. .-+.....|....+.. ....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCC
Confidence 3567899999765 334456666766666799999999988888873 221 1111111232222322 23469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-... . ...+.. +.++|+++|.++.-
T Consensus 237 d~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence 98885322 1 134556 67889999988754
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.29 Score=40.57 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=52.1
Q ss_pred HHHHHHHH-HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 022451 89 HESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (297)
Q Consensus 89 ~e~l~~~~-l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~ 167 (297)
.|.+.+.- ++...+..+.+|||.|+|.+..+++++. ...-++||+||-.+..+|-+--..+ -..++++...|...
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence 35554432 2233334789999999999999998864 5678999999999999887632111 12566777777654
Q ss_pred H
Q 022451 168 E 168 (297)
Q Consensus 168 ~ 168 (297)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.3 Score=38.21 Aligned_cols=123 Identities=13% Similarity=0.164 Sum_probs=85.2
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~ 183 (297)
|..=+|+=-+++.+++- ..++...|+-|.=..+.++.|. .+.|+++..+|+..-+.. .+++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 66777888899998874 5789999999999999999886 358999999999888765 345678999998
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC-Ccee
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVV 246 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F-~~v~ 246 (297)
+-.. ....-...+-+++ ..++- ++|+++++- | ....+..+++.+.+++.- +.+.
T Consensus 165 PfE~---~~eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~~i~kiL 219 (279)
T COG2961 165 PFEL---KDEYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEALGIRKIL 219 (279)
T ss_pred Cccc---ccHHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhcCcccee
Confidence 7432 1011111122233 22222 479999985 3 346677788888888763 3433
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.9 Score=35.20 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
-..++++++|.|.-+ +++.+... ..+|+++|+||.- ..+.... -.++. +..+. -...|+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~--alqA~~d---------Gf~v~--~~~~a----~~~adi 81 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIR--ALQAAMD---------GFEVM--TLEEA----LRDADI 81 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHH--HHHHHHT---------T-EEE---HHHH----TTT-SE
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHH--HHHhhhc---------CcEec--CHHHH----HhhCCE
Confidence 468899999998543 34555443 4799999999944 3333321 12222 22222 246798
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+.-. +. ....+.+.|+. + + +|.++.|.++.
T Consensus 82 ~vtaT------G~-~~vi~~e~~~~-m----k-dgail~n~Gh~ 112 (162)
T PF00670_consen 82 FVTAT------GN-KDVITGEHFRQ-M----K-DGAILANAGHF 112 (162)
T ss_dssp EEE-S------SS-SSSB-HHHHHH-S------TTEEEEESSSS
T ss_pred EEECC------CC-ccccCHHHHHH-h----c-CCeEEeccCcC
Confidence 88753 22 24456666665 3 3 67777888754
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.76 Score=42.40 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=43.3
Q ss_pred EEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE----EEcchHHH--Hhc--cCC
Q 022451 106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAE--LES--RKE 174 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~----~~~Da~~~--l~~--~~~ 174 (297)
||+-| |+|+++.++.++ ....+|..+|.|+.-+-..++.+.... .++++++ +.+|.++. +.. ...
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 57777 457776555542 345799999999999887777663211 2355654 58898765 322 234
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
+.|+|++.+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999876
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.86 Score=39.07 Aligned_cols=109 Identities=25% Similarity=0.287 Sum_probs=54.1
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccC--------CCCCCCeEEEEcchHHHHhccC
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKE--------AFSDPRLELVINDARAELESRK 173 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~--------~~~~~rv~~~~~Da~~~l~~~~ 173 (297)
+|-++|+|-=+ ++..+++. ..+|+++|+|++.++..++-. +.... .....|+++- .|....+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 68899998433 34444443 468999999999998877632 11100 0001232222 3333333
Q ss_pred CCceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
...|++++..+.|... +.+..-+-.+..+. +.+.|+++-++++.+..
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSS
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEE
Confidence 3478888887754321 11111122345566 67889998888877643
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.88 Score=41.39 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=62.6
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccC-CCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKE-AFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-----~~~-~~~~-------~rv~~~~~Da~~~ 168 (297)
++|.+||+| ++.++..+++. ..+|+++|++++.++.+++.+.. ... .... .++++ ..|. +.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 479999999 56677777765 34899999999999765543210 000 0000 13332 2332 11
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+ +..|+|+...+.. .....++|+. +.+.++|+.+++.++.
T Consensus 80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTS 119 (282)
T ss_pred h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 2 4579999876421 1123588888 7889999998877654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.1 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCCeEEEEccchhH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+..+||++|+|+=+ ++.++++. .+..+|+++|.++.-++.|++ +.. . ....+ +.. ...+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~----~~~-~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD----IPE-DLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh----hhh-ccCCcE
Confidence 457899999976433 34455553 445689999999988888875 211 0 01111 111 124898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+ |.... + .+...++. ..+.|+++|.+++-.
T Consensus 226 vi-D~~G~----~----~~~~~~~~-~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AF-ECVGG----R----GSQSAINQ-IIDYIRPQGTIGLMG 256 (341)
T ss_pred EE-ECCCC----C----ccHHHHHH-HHHhCcCCcEEEEEe
Confidence 87 44321 0 01234555 568999999987653
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.4 Score=48.09 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=73.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc--
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES-- 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-----~~~l~~-- 171 (297)
..+...||+|||..|++.+.+.+..|. .-|++|||-|.- + -|++.-+++|. +.-++.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p-------~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------P-------IPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------c-------CCccchhhhhhhHHHHHHHHHHHH
Confidence 456788999999999999999886554 467799996532 1 12222223332 222222
Q ss_pred cCCCceEEEEcCCCCCCCCC------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 172 RKESYDVIIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
..-+.|+|++|..... ++. ....++...++. +-..|.-||.++..... .+.+..++..+.+.|..|
T Consensus 107 ~t~~advVLhDgapnV-g~~w~~DA~~q~~L~l~al~L-A~~~l~~~g~fvtkvfr------s~dy~~ll~v~~qLf~kv 178 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNV-GGNWVQDAFQQACLTLRALKL-ATEFLAKGGTFVTKVFR------SEDYNGLLRVFGQLFKKV 178 (780)
T ss_pred HhCCCcEEeecCCCcc-chhHHHHHHHhhHHHHHHHHH-HHHHHHhcCcccccccc------CCcchHHHHHHHHHHHHH
Confidence 1234599999976322 110 001223344444 45889999998876532 233455666666666666
Q ss_pred eEE
Q 022451 246 VPY 248 (297)
Q Consensus 246 ~~~ 248 (297)
..+
T Consensus 179 ~~t 181 (780)
T KOG1098|consen 179 EAT 181 (780)
T ss_pred Hhc
Confidence 544
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.66 E-value=2.7 Score=39.22 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhcc--CC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESR--KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~~--~~ 174 (297)
.+..+||++|+|+ |..+.++++..+. +|++++.+++-.+.++++ +.. .-+.... .|..+.+... ..
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GAD------LTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CCc------eEecCccccHHHHHHHHHhhcccC
Confidence 4578999999854 4556666766554 799999999999988763 321 0011111 1333333321 23
Q ss_pred CceE---EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDV---IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~---Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|. +++|... .+ ..++. +.++|+++|.++...
T Consensus 237 g~d~~~d~v~d~~g----~~-------~~~~~-~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECSG----SK-------PGQES-ALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECCC----Ch-------HHHHH-HHHHHhcCCeEEEEC
Confidence 4552 3445432 11 34444 467899999997654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.45 E-value=3.2 Score=38.26 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.++.+||++|+|+ |..+.++++..+..+|++++.+++-.+.++++ +.. .-+.....+ .+.+.. ....+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence 4578999998642 33445566666555599999999988888764 211 001111122 222222 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... ...+.. ..+.|+++|.+++..
T Consensus 234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence 88844321 123344 467899999998653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=90.42 E-value=3.2 Score=36.56 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-ccCCCceEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~-~~~~~yD~Ii 180 (297)
+-++|+||+=+....... .+.-.|+.+|++++--. +...|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~~~-------------------I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQHPG-------------------ILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCCCCC-------------------ceeeccccCCCCCCcccceeEEE
Confidence 469999998644433322 23456999999864322 334443221 11 1357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcE-----EEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGv-----l~~~~ 219 (297)
+.+.-.. .|. .--.-+.++. +.+.|+|+|. |.+-.
T Consensus 110 ~SLVLNf--VP~-p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 110 LSLVLNF--VPD-PKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred EEEEEee--CCC-HHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence 8875221 121 1223367777 7899999999 76654
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.37 Score=41.62 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=31.2
Q ss_pred cCCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHH
Q 022451 99 HHPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 99 ~~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi 139 (297)
..+.+++||++|.- +|....+++.. ..+|+++|++|.+-
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r 80 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMR 80 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHH
Confidence 34789999999975 77777777753 57999999999873
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.6 Score=32.44 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hhc-cCCCceEEE
Q 022451 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES-RKESYDVII 180 (297)
Q Consensus 106 VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~-~~~~yD~Ii 180 (297)
|+++|+|.-+ ++..+.+ ...+|+++|.|++.++.+++. .+.++.+|+.+. +++ .-++.|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5777776332 2333333 235899999999999988863 267889998643 443 236799888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...+.. . +..... ..+.+.|...+++..
T Consensus 68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARV 96 (116)
T ss_dssp EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEE
T ss_pred EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEE
Confidence 8765321 1 111112 346778888888775
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.30 E-value=5.1 Score=34.94 Aligned_cols=98 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-~~~~~~yD~ 178 (297)
.++.+||+.|+|+ |..+.++++..+ .+|++++.++...+.+++..... -+.....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADH-------VIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCce-------eccCCcCCHHHHHHHhcCCCCCE
Confidence 5678999999885 555666666554 78999999998888876542100 0111111211111 123467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+..... + ..++. +.+.|+++|.++...
T Consensus 205 vi~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG-----P-------ETLAQ-ALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC-----H-------HHHHH-HHHhcccCCEEEEEc
Confidence 9865321 0 23455 567899999998664
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.58 Score=36.82 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=59.6
Q ss_pred chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCC
Q 022451 112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEG 189 (297)
Q Consensus 112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~ 189 (297)
|-|..+.+++++.+ .+|++++.++.-.+.++++-... -+.....|..+.++.. ...+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 46888888888876 89999999999999999863211 0111112244455442 247999986542
Q ss_pred CCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.++. ..++|+++|.+++-..
T Consensus 68 -------~~~~~~~-~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -------SGDTLQE-AIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -------SHHHHHH-HHHHEEEEEEEEEESS
T ss_pred -------cHHHHHH-HHHHhccCCEEEEEEc
Confidence 1255666 6789999999987754
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.17 E-value=2.3 Score=36.21 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=58.2
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchHHHH
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL 169 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------~~rv~~~~~Da~~~l 169 (297)
+|.+||+|.=+ ++..++.. ..+|+.+|.|++.++.+++++... ...+. -.+++ ...| +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~d----l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTD----L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESS----G
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccC----H
Confidence 58899998433 44555554 579999999999999988875421 00010 02333 2233 1
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
... ...|+|+=..+.. .=..+++|+. +.+.+.|+-+|+.|+.
T Consensus 74 ~~~-~~adlViEai~E~-------l~~K~~~~~~-l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 74 EEA-VDADLVIEAIPED-------LELKQELFAE-LDEICPPDTILASNTS 115 (180)
T ss_dssp GGG-CTESEEEE-S-SS-------HHHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred HHH-hhhheehhhcccc-------HHHHHHHHHH-HHHHhCCCceEEecCC
Confidence 222 2578888665431 1124689999 8999999999999964
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.94 Score=39.52 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 022451 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (297)
Q Consensus 96 ~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~ 171 (297)
|++..-..++||++|+|.=+. ++.+++. .++|++|+.+ ++..+++++ .+++++.++.....
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~-----------~~i~~~~~~~~~~d-- 66 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ-----------GGITWLARCFDADI-- 66 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc-----------CCEEEEeCCCCHHH--
Confidence 333445678999999986544 4555553 4689988654 444444332 36777777643221
Q ss_pred cCCCceEEEEcCCC
Q 022451 172 RKESYDVIIGDLAD 185 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~ 185 (297)
-..+|+|+....+
T Consensus 67 -l~~~~lVi~at~d 79 (205)
T TIGR01470 67 -LEGAFLVIAATDD 79 (205)
T ss_pred -hCCcEEEEECCCC
Confidence 2458999887654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.3 Score=41.90 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457999999985 44444444445789999999985
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.6 Score=38.28 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=24.8
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid 135 (297)
...+|+++|+|+ |+ ++..+.+ .+..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 467899999984 44 3455554 468899999999
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.8 Score=40.45 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCC----CCCCeEEEEcchHHHHhc
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES 171 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~----~~~rv~~~~~Da~~~l~~ 171 (297)
.++|.+||+| +.+++..++.. ..+|+++|.+++.++.+++.+... ...+ ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999999 55666666654 468999999999887766543210 0000 01233433 2322222
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..-|+|+-..+... -...++|+. +.+.++|+-+|+.|+.
T Consensus 82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45799998765321 124578888 7899999998887763
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=89.92 E-value=3 Score=34.46 Aligned_cols=143 Identities=19% Similarity=0.172 Sum_probs=76.1
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+|.+||+|.++.+....-.....+|+....+++.++..++.-.. .... -.+++. ...|..+.++ ..|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~-l~~~i~-~t~dl~~a~~----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIK-LPENIK-ATTDLEEALE----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSB-EETTEE-EESSHHHHHT----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcc-cCcccc-cccCHHHHhC----cccEEE
Confidence 58899999887754433222347999999999888776653221 1100 113454 4577666663 469999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC---
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--- 257 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~--- 257 (297)
+-.+. ..-+++++. ++..|+++=.++.-...- .......+. +.+++.++.-.......|++..
T Consensus 75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~KG~-~~~~~~~~~---~~i~~~~~~~~~~~lsGP~~A~Ei~ 140 (157)
T PF01210_consen 75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATKGF-EPGTLLLLS---EVIEEILPIPRIAVLSGPSFAEEIA 140 (157)
T ss_dssp E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS-SE-ETTEEEEHH---HHHHHHHSSCGEEEEESS--HHHHH
T ss_pred ecccH---------HHHHHHHHH-HhhccCCCCEEEEecCCc-ccCCCccHH---HHHHHHhhhcceEEeeCccHHHHHH
Confidence 87642 123588999 799996665555432110 001222333 4444555543222345677641
Q ss_pred ---ceeEEEEecC
Q 022451 258 ---TWGWIMVSIY 267 (297)
Q Consensus 258 ---~~~~~~as~~ 267 (297)
.-.+++||+.
T Consensus 141 ~~~pt~~~~as~~ 153 (157)
T PF01210_consen 141 EGKPTAVVIASKN 153 (157)
T ss_dssp TT--EEEEEEESS
T ss_pred cCCCeEEEEEecc
Confidence 2455667654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.26 Score=44.99 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+...-++++|||.|-.... .|...+.+.|+....+..|++- ....+..+|+.... .....||.+
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~ 107 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAA 107 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccc
Confidence 35577899999999876543 2567899999999888888752 11256778876533 346789998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-+.-++. ....-....++. +.++|+|||...++.
T Consensus 108 lsiavihhl---sT~~RR~~~l~e-~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 108 LSIAVIHHL---STRERRERALEE-LLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhh---hhHHHHHHHHHH-HHHHhcCCCceEEEE
Confidence 887664321 123334567888 789999999876664
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.1 Score=39.18 Aligned_cols=101 Identities=12% Similarity=0.289 Sum_probs=64.2
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~~ 168 (297)
++|-+||+| ++.++..++.. ..+|+.+|.+++.++.+++.+... ...+.. .|++ ...|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH
Confidence 589999999 56667776664 468999999999998877654311 000000 1222 22332 22
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccC-CCCcEEEEecC
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG 220 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGvl~~~~~ 220 (297)
+ ...|+|+-..++.. -...++|.. +.+.+ +|+.+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 45799988766421 124567788 77888 88999988864
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.48 E-value=7.8 Score=38.22 Aligned_cols=118 Identities=8% Similarity=0.013 Sum_probs=61.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+++|+++|+|.=+ .....++..+ .+|+++|.||.-...|... + ..+. +..+.+ +..|+|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVV 313 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIF 313 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEE
Confidence 357999999998433 2233333343 5899999998754444332 1 1111 222333 347999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH-HHHHhhCCceeEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKYVVPYS 249 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~-~~l~~~F~~v~~~~ 249 (297)
+.... . ..+... . ..+.+++||+++ |.+.++...+...+...- -.-+++.+++..|.
T Consensus 314 I~tTG------t-~~vI~~----e-~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~ 371 (477)
T PLN02494 314 VTTTG------N-KDIIMV----D-HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV 371 (477)
T ss_pred EECCC------C-ccchHH----H-HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEE
Confidence 87321 1 123222 2 346789998885 655432122332332220 01134567777665
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.40 E-value=3.9 Score=38.74 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
....+||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +.. .-+.... .|..+.+.. ....+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT------DFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCC
Confidence 4578999998752 33456666666555799999999999999774 211 1111111 123333332 22369
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.- .+ +.++. ..+.++++ |.+++-.
T Consensus 270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEEc
Confidence 98875322 11 34455 45678886 8886643
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1 Score=44.18 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=47.1
Q ss_pred HHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 94 ~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
++|++..-..++||++|+|.=+.- ..+++. .++|++| |+++++.+++.+ .+++++..+...
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~-- 67 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDE-- 67 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCCh--
Confidence 356666678899999999876653 344443 4678877 777777665442 456666654321
Q ss_pred hccCCCceEEEEcCCC
Q 022451 170 ESRKESYDVIIGDLAD 185 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~ 185 (297)
..-+.+++|+....+
T Consensus 68 -~dl~~~~lv~~at~d 82 (457)
T PRK10637 68 -SLLDTCWLAIAATDD 82 (457)
T ss_pred -HHhCCCEEEEECCCC
Confidence 111347777776544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.59 Score=44.49 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++..++++|||-|...+++... ..+.+++++.++.-+..+........ -+.+-.++..|..+-. ..+..||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEE
Confidence 34557999999999999998876 46788999999888777766543211 1233344666633221 2456799874
Q ss_pred E-cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 G-DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~-D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
. |..-. .| .....|++ +.+.++|||+++..
T Consensus 184 ~ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK 214 (364)
T ss_pred EEeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence 4 43321 12 12478888 79999999999865
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.7 Score=38.41 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=59.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~ 178 (297)
..+.+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ +.. .-+.....+....+. ...+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 456799998765 3666677777654 5799999999998888763 221 001111112222221 23457998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++..... ...++. +.+.|+++|.++...
T Consensus 236 vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT------------QPTFED-AQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEEC
Confidence 7743211 134566 678999999998653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.4 Score=39.13 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
..++.-|||--+|+|+++.++.+. ..+..++|+++...+.|++.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 356778999999999999998886 4678999999999999988764
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.6 Score=37.26 Aligned_cols=71 Identities=32% Similarity=0.404 Sum_probs=48.7
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
++++++|+| +..+++.|.+. ...|+++|.|++.++....- ..-...+++|+.+ .|++. -..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 368999998 44456666664 35899999999997763320 1236778888743 45543 367999
Q ss_pred EEEcCCC
Q 022451 179 IIGDLAD 185 (297)
Q Consensus 179 Ii~D~~~ 185 (297)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9887653
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.4 Score=38.75 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=61.7
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHH
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARA 167 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~-------~rv~~~~~Da~~ 167 (297)
-++|.+||+|. ..++..+++. ..+|+++|.+++.++.+.+.+... ...+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 36799999984 3455666553 358999999999988765432210 000000 123322 332 2
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+ ...|+|+...++.. -....+|+. +...++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts 120 (292)
T PRK07530 80 DL----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTS 120 (292)
T ss_pred Hh----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 22 35799998876421 123467788 7889999988876653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.5 Score=36.85 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=61.3
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh------ccCCCC--------CCCeEEEEcchHH
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS--------DPRLELVINDARA 167 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~--------~~rv~~~~~Da~~ 167 (297)
++|.+||+|. +.++..+++. ..+|+++|.+++.++.+++.... ....+. ..+++ ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH
Confidence 5799999984 3445555543 35899999999998887765310 000000 02333 2344333
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+ +.-|+||...+... -...++|+. +.+.++++-+++.++
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~snt 120 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNS 120 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECc
Confidence 33 34799998876321 123467788 688888888887765
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.6 Score=36.47 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.7
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+||++|+|+ |+-....+...+..+++.+|-|.-
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 457899999885 333333333457899999998843
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.6 Score=39.76 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=24.7
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+ ++..|.+ .+..+|+.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 457899999984 33 3444444 4688999999983
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.45 E-value=2.9 Score=38.22 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=59.9
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--------c-cCCCCC-------CCeEEEEcch
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFSD-------PRLELVINDA 165 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~--------~-~~~~~~-------~rv~~~~~Da 165 (297)
++|.+||+| ++.++..++.. ..+|+++|.+++.++.+++.... . ...... .+++. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 679999999 44556666654 35899999999999876553211 0 000000 12222 1222
Q ss_pred HHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+ +..|+|+...+... -...++|+. +.+.++|+.+++.++
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 212 34799998865321 123578888 788899888887654
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.40 E-value=6.6 Score=36.08 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=57.8
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+..+||+.|+|+ |..+.++++..+..+|++++.+++..+.++++ +... -+.....+..... .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~~------vi~~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GADE------TVNLARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCCE------EEcCCchhhhhhh-ccCCCccEEE
Confidence 678899988765 55666777765555799999999988887764 2110 0000001112222 1234589987
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.-.. . ...++. +.+.|+++|.++..
T Consensus 237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence 5432 1 134455 67899999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.7 Score=36.38 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+-....+...+..+++.+|-|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 346899999984 33333333345789999999874
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=88.40 E-value=3.5 Score=37.97 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
+++.+||+.|+| .|..+.++++..+...|.+++.++...+.+++. +. +.-+.....+..+.+.. ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 456789887654 244556666665445788889888888877753 21 11111122233333332 235699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+-... . .+.++. +.++|+++|.++.-
T Consensus 239 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVG-----F-------EETFEQ-AVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccC-----C-------HHHHHH-HHHHhhcCCEEEEE
Confidence 8874321 1 134555 57899999988754
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.53 Score=39.74 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=64.7
Q ss_pred EEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhh--hccCCCCCCCeEEE-EcchHHHHhc---cCCCceEE
Q 022451 107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLV--VNKEAFSDPRLELV-INDARAELES---RKESYDVI 179 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~--~~~~~~~~~rv~~~-~~Da~~~l~~---~~~~yD~I 179 (297)
|.+|=|.-+.+..+++..+ ..+|++--.|.. -++.++|-. .+-..++...++++ --||...-.. ...+||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 5788888889999988654 567776655554 233333310 11011233444443 3455443222 34789999
Q ss_pred EEcCCCCCCC---CC-----ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEG---GP-----CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~---~p-----~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+-|..... .. ...|. ..||+. +++.|+++|.+.+..
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll-~~Ff~S-a~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELL-RGFFKS-ASQLLKPDGEIHVTL 125 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHH-HHHHHH-HHHhcCCCCEEEEEe
Confidence 9998754310 00 01233 579999 799999999887764
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=88.18 E-value=4.8 Score=33.84 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|+.|||=+-.....- ...+..++...|+|.+......+.|-..+ ++.|. +..+.+ ..+||+|+
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p~------~~~~~l---~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEPE------ELPEEL---KGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEECC--CCChh------hhhhhc---CCCceEEE
Confidence 45689999999765554433 13456789999999887664433121110 01111 111122 46899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|--. ....+ ..-+. ++..+++++.+++-+
T Consensus 92 ~DPPFl~-----~ec~~-k~a~t-i~~L~k~~~kii~~T 123 (162)
T PF10237_consen 92 IDPPFLS-----EECLT-KTAET-IRLLLKPGGKIILCT 123 (162)
T ss_pred ECCCCCC-----HHHHH-HHHHH-HHHHhCccceEEEec
Confidence 9986310 11111 12244 566778888877653
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=2.2 Score=43.52 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=48.5
Q ss_pred CCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCce
Q 022451 103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD 177 (297)
..+|+++|+|. |.. ++.+.+. ..+++++|.|++.++.++++ ..+++.+|+.+ .++.. -++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 46899999973 333 3344432 35799999999999988762 35689999854 35432 36788
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
++++-..+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88887654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.4 Score=43.03 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=35.0
Q ss_pred CCeEEEEccchhHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhhhh
Q 022451 103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
+-+|+++|+|.|.++..+++.. ...++..||++|.+.+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5799999999999998887642 23589999999999998888764
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.93 Score=37.80 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 92 l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
|..+|+...-..++||++|+|.=+. ++.+++. ..+|++| +|+..+..++. +.+++... .|-
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VI--sp~~~~~l~~l----------~~i~~~~~---~~~ 64 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVV--SPEICKEMKEL----------PYITWKQK---TFS 64 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEE--cCccCHHHHhc----------cCcEEEec---ccC
Confidence 3346777777899999999985544 4455553 4688888 45544333321 23443322 222
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
...-+.+|+|+....
T Consensus 65 ~~dl~~a~lViaaT~ 79 (157)
T PRK06719 65 NDDIKDAHLIYAATN 79 (157)
T ss_pred hhcCCCceEEEECCC
Confidence 222356888887644
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.84 E-value=2 Score=42.96 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=56.3
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hc--cCC
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ES--RKE 174 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~~--~~~ 174 (297)
.+|+||+-|+| |+++.++.+. ...++|...|.|+--+..-++.+... +...++.++.+|.++.= .. .+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 56889988854 6766554432 35689999999999888777665432 12478899999997753 22 245
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
+.|+|++.+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 7999999886
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.60 E-value=6.1 Score=35.62 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCCCeEEEEccchhHHHH---HHHhcC--CCcEEEEEECCH--------------------------HHHHHHHhhhhhc
Q 022451 101 PNPKTIFIMGGGEGSTAR---EILRHK--TVEKVVMCDIDE--------------------------EVVEFCKSYLVVN 149 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~---~l~~~~--~~~~v~~VEid~--------------------------~vi~~a~~~f~~~ 149 (297)
.-|..|+++|+--|+.+. .+++.. +..+|.+.|.=+ ...+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 568999999998776553 333321 345677776311 1344455555422
Q ss_pred cCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 ~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+ +.+++++++.|+..+.+... .+++-++-+|.-- .--|.+-++. +..+|.|||++++-.
T Consensus 153 g--l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--------YesT~~aLe~-lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 G--LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--------YESTKDALEF-LYPRLSPGGIIIFDD 212 (248)
T ss_dssp T--TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred C--CCcccEEEECCcchhhhccCCCccEEEEEEeccc--------hHHHHHHHHH-HHhhcCCCeEEEEeC
Confidence 1 24579999999998888653 4567777777420 1125677787 799999999999874
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.55 E-value=6 Score=37.92 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCeEEEEcc--chhHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhc--
Q 022451 102 NPKTIFIMGG--GEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-- 171 (297)
Q Consensus 102 ~~~~VL~iG~--G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~----~Da~~~l~~-- 171 (297)
...+||++|+ +-|..+.++++.. +..+|+++|.+++-++.+++.++..... ......++. .|..+.+..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS-RGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc-cCceEEEECCCccccHHHHHHHHh
Confidence 4578999973 4566667777753 2358999999999999999864321000 000111121 233333432
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
....+|+|+..... + ..++. ..+.|+++|.+++.
T Consensus 254 ~g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence 23469988865321 1 34455 56788888866544
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=87.53 E-value=3.4 Score=36.75 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++||| .|+...+.+...+..+++.||-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35689999997 455555555556789999999885
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.53 E-value=3.1 Score=38.01 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----hcc-CCCCC-------CCeEEEEcchHH
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA 167 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-----~~~-~~~~~-------~rv~~~~~Da~~ 167 (297)
-++|.+||+| +..++..++.. ..+|+++|.+++.++.+++.+. +.. ..... .++. ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999998 55566766664 3689999999999886655432 000 00000 0111 22232 2
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+ +.-|+|+...++.. . ....+|+. +.+.++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieav~e~~------~-~k~~v~~~-l~~~~~~~~il~s~tS 120 (295)
T PLN02545 80 EL----RDADFIIEAIVESE------D-LKKKLFSE-LDRICKPSAILASNTS 120 (295)
T ss_pred Hh----CCCCEEEEcCccCH------H-HHHHHHHH-HHhhCCCCcEEEECCC
Confidence 22 34799998876421 1 13467777 6788999888876653
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=87.50 E-value=4.3 Score=39.68 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=29.1
Q ss_pred eEEEEccchhHHHHHHH----hc---CCCcEEEEEECCHHHHHH----HHhhhh
Q 022451 105 TIFIMGGGEGSTAREIL----RH---KTVEKVVMCDIDEEVVEF----CKSYLV 147 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~----~~---~~~~~v~~VEid~~vi~~----a~~~f~ 147 (297)
+|.+||+|+. .+..+. +. .+..+|..+|||++-++. |++.+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6889999986 554433 22 356899999999977665 454443
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.2 Score=40.68 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (297)
..++||++|+|+ |......+...+..+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999984 4444444444578899999998
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.11 E-value=8.9 Score=35.52 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..++|+++|+|.=+ .....+...+..+|++++.+++- .++|+++ + . ..+. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g--------~--~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G--------G--NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C--------C--eEEeHHHHHHHH----hcCCE
Confidence 57899999986322 22222333346789999999874 4566653 1 1 1221 2333333 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||.-...+. + .+.++. +.+....+|.+++....|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 998865432 1 233443 222333367888887655
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.10 E-value=3.4 Score=41.11 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----c-cCCCCC-------CCeEEEEcchH
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD-------PRLELVINDAR 166 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-----~-~~~~~~-------~rv~~~~~Da~ 166 (297)
+-++|-+||+| ++.++..++.. .-.|+++|.+++.++.++++... . ...+.. .|++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 45789999999 55677777764 46899999999999987665431 0 000000 123332 2321
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
-+ ..-|+||-..++.. -....+|.. +.+.++|+.+++.|+.
T Consensus 83 -~~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntS 123 (507)
T PRK08268 83 -DL----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTS 123 (507)
T ss_pred -Hh----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 12 35899998877532 123467777 6788889988888864
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.02 E-value=5.2 Score=36.43 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=59.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.++.+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.....|..+.+.. ....+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence 45689999984 45666777777654 4799999999888888873 321 0011111233333322 235699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+ |... + +.++. ..++|+++|.++..
T Consensus 214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence 888 4321 1 23455 57889999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.68 E-value=5.2 Score=37.43 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++.++.. .-+..... |..+.+.. ..+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence 45789999987 35667777887764 57899999988888776433321 01111111 33333332 23468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+ |.. +. ..+.. +.++|+++|.+++..
T Consensus 230 D~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 9887 432 11 23455 568999999998653
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=86.65 E-value=4.6 Score=32.51 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l~~~~~~yD 177 (297)
-..++||+||+|+-+ .+..+... +..+|+++..+.+-.+...+.++ ...++++.-+ ..+.+ .++|
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D 77 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD 77 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence 467899999987433 34555554 67789999999765443333331 2345554433 22222 4699
Q ss_pred EEEEcCCCC
Q 022451 178 VIIGDLADP 186 (297)
Q Consensus 178 ~Ii~D~~~~ 186 (297)
+||.-.+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999887643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.61 E-value=10 Score=35.01 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc----hHHHHhc-cC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELES-RK 173 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D----a~~~l~~-~~ 173 (297)
..++.+||+.|+|+ |..+.++++..+...|.++.-+++-.+.+++. +.. .-+.....+ ..+.... ..
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCC
Confidence 35678999987654 55566777766554589998888888877663 211 001111112 1111111 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.+|+|+-.... ...++. +.++|+++|.++..
T Consensus 233 ~~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 569998864321 124555 57899999998754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.53 E-value=6.5 Score=37.24 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=57.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
..+.+||+.|+|+ |..+.++++..+...|++++.++.-.+.|++. +.. .-+.... .|..+.+.. ....+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 4578999998643 33445666666666799999999988888764 211 0011111 133333332 22368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+-... .+ ..+.. ..+.|+++ |.+++..
T Consensus 265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence 98874321 11 23344 45788898 9997653
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=86.43 E-value=6.5 Score=36.00 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=59.2
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
.+..+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.... .+..+.++. ..+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence 45789999984 46667777887654 4788899998888888763 321 0011111 122333332 23469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+ |... + +.+.. +.++|+++|.++...
T Consensus 209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEec
Confidence 9888 4321 1 22355 578999999998653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.1 Score=38.89 Aligned_cols=116 Identities=15% Similarity=0.005 Sum_probs=62.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCC---CCCCeEEEEcchHHHHhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF---SDPRLELVINDARAELESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~---~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
..+...|.++=.|+|.+++-+... .+...|+.+-.++. ...+..+-+...... .-.+++.+-.+...+. ..+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~-~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~ 122 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL-TKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQK 122 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh-cccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCc
Confidence 466788999999999999988875 34456666544322 112211110000000 0123444444433322 3455
Q ss_pred ceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.|++.....++.-+ .+...-+-..++++ +.+.|||||++.+..
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~d 166 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVED 166 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEEe
Confidence 66666544432110 00012233468888 799999999999875
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=86.38 E-value=2.9 Score=36.86 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+|+++|||+ |+.....+...+..+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457899999984 44333333345788999997765
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.34 E-value=6.7 Score=36.31 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=54.8
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
.+..+||+.|+| .|..+.++++..+ .+|++++.+++-.+.|++. +.. . ++. .| ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~-------~--vi~~~~------~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA-------S--AGGAYD------TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc-------e--eccccc------cCcccceE
Confidence 457899999965 3444566666654 4799999999988988874 211 0 110 01 11235887
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.... .+ +.+.. ..+.|+++|.+++-.
T Consensus 227 ~i~~~~-----~~-------~~~~~-~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAP-----AG-------GLVPP-ALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCC-----cH-------HHHHH-HHHhhCCCcEEEEEe
Confidence 654321 11 34555 568999999997653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.30 E-value=12 Score=34.79 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
+.+.+|.+||+|. |.....++...+. .++..+|++++.++.-..-+.... .+. .++.+..+|-.+ + +..|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h----CCCCE
Confidence 5678999999985 5544444433333 479999998876543222222111 111 346666555322 2 45899
Q ss_pred EEEcCCCCCCCCCc-cCcc--cHHHHHHHHc--ccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGvl~~~~ 219 (297)
|++-.-.|...+.. ..++ ....++.++. ...+|+|++++-+
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99876554421110 0111 1123333111 2345899886654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.99 E-value=9.7 Score=34.99 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCHH----HHHHHHhhhhh
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEE----VVEFCKSYLVV 148 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~----vi~~a~~~f~~ 148 (297)
||.+...+.|-.-+.+.+.. .......++||+||+|+-+-+ ..+.. .+..+|+++..+++ ..+++.++ ..
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~--~~~~~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~-~~ 173 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKE--SGFDIKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRV-NE 173 (288)
T ss_pred CCEEEEEecCHHHHHHHHHh--cCCCcCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHh-hh
Confidence 45444444554334444432 112245689999999866543 22233 35789999999864 33333322 11
Q ss_pred ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
. ....+.+..-+....+...-.++|+||.-.+
T Consensus 174 ~----~~~~~~~~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 174 N----TDCVVTVTDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred c----cCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence 0 0112333322211112222357999988654
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.94 E-value=5 Score=37.52 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
+..++||+.|+ |-|.++.++++..+. .+.++--+++-.+.+++... |.-+.+...|..+-+++ . ++.+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 45789999985 455678888887655 44444455544447776532 12233445555554543 2 3469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+|+--.. .+.+.. ..+.|+++|.++....
T Consensus 213 Dvv~D~vG-------------~~~~~~-~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTVG-------------GDTFAA-SLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECCC-------------HHHHHH-HHHHhccCCEEEEEec
Confidence 99984321 144555 5689999999987653
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.94 E-value=5.5 Score=36.60 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=58.9
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC--------CCeEEEEcchHHHHhccC
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK 173 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~--------~rv~~~~~Da~~~l~~~~ 173 (297)
++|.+||+| ++.++..+++. ..+|+++|.+++.++.+++........... .+++ ...|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR-MEAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE-EeCCHHHHh----
Confidence 679999999 44556666653 358999999999988877642110000000 1122 223332222
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..|+|+...+... -...+++.. +...++++-+++.++
T Consensus 78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT 115 (311)
T ss_pred ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence 35799998865321 113467777 677777766665554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=85.91 E-value=3.4 Score=40.79 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=56.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..-++|+|+.+|.|+++..+... + |.+.-.-|. .....++.- + +.-+-=..-|..+-+..-+.+||+|=
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~---~~~ntL~vI---y-dRGLIG~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPV---SGPNTLPVI---Y-DRGLIGVYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEeccc---CCCCcchhh---h-hcccchhccchhhccCCCCcchhhee
Confidence 45689999999999999998875 3 333222121 111111100 0 00111122244444445568899987
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.. +... ..+ .+ ...+-+ +-|.|+|+|.+++..
T Consensus 433 A~~lfs~~~-~rC-~~--~~illE-mDRILRP~G~~iiRD 467 (506)
T PF03141_consen 433 ADGLFSLYK-DRC-EM--EDILLE-MDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhhc-ccc-cH--HHHHHH-hHhhcCCCceEEEec
Confidence 6633 2221 112 11 345556 799999999999863
|
; GO: 0008168 methyltransferase activity |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.2 Score=41.40 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=61.1
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------------------cCCCCC---------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------------------KEAFSD--------- 155 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------------------~~~~~~--------- 155 (297)
+-+||+=|||.|.++..++..... +-+=|.+--|+= +..| -++ .....+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli-~S~F-iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLI-CSSF-ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHH-HHHH-HHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 567888899999999999986533 334466555432 2221 110 000001
Q ss_pred -----------CCeEEEEcchHHHHhcc--CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 156 -----------PRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 156 -----------~rv~~~~~Da~~~l~~~--~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
....+-.||..+....+ .+.||+|+..-|-.. +... .|+++. +.+.|+|||+. +|.+
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT----a~Ni--leYi~t-I~~iLk~GGvW-iNlG 296 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT----AHNI--LEYIDT-IYKILKPGGVW-INLG 296 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec----hHHH--HHHHHH-HHHhccCCcEE-Eecc
Confidence 11223446654443332 246999988755211 1122 289999 79999999988 4654
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=85.85 E-value=14 Score=28.36 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=68.7
Q ss_pred eEEEEccchhHHH--HHHHhcCCCcEEE-EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGEGSTA--REILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~G~~~--~~l~~~~~~~~v~-~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||+|..+.. ..+.+..+..+++ ++|.+++-.+.+.+.++ +. ...|..+.+.. ...|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH--TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh--hcCCEEEE
Confidence 6899999766432 3444443455665 78999988776655432 23 66777777764 36999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
..+... -++. +.+.|+-|--+.+.- |. ..+.+..+++.+..++.-.
T Consensus 69 ~tp~~~------------h~~~-~~~~l~~g~~v~~EK-P~--~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 69 ATPPSS------------HAEI-AKKALEAGKHVLVEK-PL--ALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp ESSGGG------------HHHH-HHHHHHTTSEEEEES-SS--SSSHHHHHHHHHHHHHHTS
T ss_pred ecCCcc------------hHHH-HHHHHHcCCEEEEEc-CC--cCCHHHHHHHHHHHHHhCC
Confidence 865321 1222 455666666665553 22 3467777888887776543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.83 E-value=3.9 Score=39.28 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=46.4
Q ss_pred CeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCceEE
Q 022451 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI 179 (297)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~yD~I 179 (297)
++||+||||. |.. +..|++. ...+|+++|.+++-.+.++... +++++.+.-|+.+. +..--+.+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence 5799999963 222 3444444 4479999999988877776542 24677776665332 22222346999
Q ss_pred EEcCCC
Q 022451 180 IGDLAD 185 (297)
Q Consensus 180 i~D~~~ 185 (297)
|.-++.
T Consensus 73 In~~p~ 78 (389)
T COG1748 73 INAAPP 78 (389)
T ss_pred EEeCCc
Confidence 987763
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.81 E-value=11 Score=34.78 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD 177 (297)
.++.+||+.|+| .|..+.++++..+..+|.+++.+++-.+.++++ +.. .-+.....|..+.+.. . ...+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCC
Confidence 456889999754 233445556655544899999999988888764 221 1111122233333332 2 23499
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... + ..++. +.+.|+++|.++.-.
T Consensus 244 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV-----Q-------ATLDT-AIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC-----H-------HHHHH-HHHhccCCCEEEEEc
Confidence 99864321 1 33455 568899999887653
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.80 E-value=19 Score=33.27 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=48.4
Q ss_pred cCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 99 HHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..++.+++++||+|.=+- +..+....+..+|.+.+.+++-.+...+.+... .+.+...|..+.+ ...
T Consensus 121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~a 189 (304)
T PRK07340 121 APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP----EAV 189 (304)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcC
Confidence 346789999999975443 333333356689999999987765544443311 1233345655555 369
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|+|+.-.+.
T Consensus 190 DiVitaT~s 198 (304)
T PRK07340 190 DLVVTATTS 198 (304)
T ss_pred CEEEEccCC
Confidence 999987664
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=8.4 Score=39.18 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=58.7
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
.+|+++|+|-=+ +++.+.++ ..+++++|.||+.++.++++ ..+++.+|+.+ .+++. -++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 579999887332 23444433 35799999999999988763 25688999854 34442 367898
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++-..++. .. ...... .+.+.|+..++...
T Consensus 468 vv~~~~d~~-----~n---~~i~~~--~r~~~p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPE-----DT---MKIVEL--CQQHFPHLHILARA 498 (601)
T ss_pred EEEEeCCHH-----HH---HHHHHH--HHHHCCCCeEEEEe
Confidence 888765432 01 122222 35677777776654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=85.59 E-value=4.6 Score=36.69 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=53.7
Q ss_pred eEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+| +|.++..+.+. ..+|+++|.++...+.+++.-. +.....+. +.+ ...|+|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 58899988 35667776664 3589999999998887765310 11111221 212 457999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+... ..++++. +...++++-++ +.+
T Consensus 65 vp~~~---------~~~~~~~-l~~~l~~~~ii-~d~ 90 (279)
T PRK07417 65 LPIGL---------LLPPSEQ-LIPALPPEAIV-TDV 90 (279)
T ss_pred CCHHH---------HHHHHHH-HHHhCCCCcEE-EeC
Confidence 65211 2356777 67778776544 554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=85.57 E-value=5.4 Score=38.56 Aligned_cols=73 Identities=25% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-cCCCc
Q 022451 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~-~~~~y 176 (297)
..++++++|+|.=+ +++.+.+. ...++++|.|++.++.+++.+ +.+.++.+|+. +.|.. .-+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46889999996332 23333332 458999999999888776532 34678888984 33433 33679
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|.|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 998876543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=85.36 E-value=13 Score=34.28 Aligned_cols=109 Identities=21% Similarity=0.344 Sum_probs=55.3
Q ss_pred CeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++|.+||+|. |.. +..++......+|..+|++++..+....-+.... ......+.+...|... + ...|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 3799999985 333 3333333222489999999887654333222110 0111234555555322 2 46899999
Q ss_pred cCCCCCCCCCc-cCcc--cHHHHHHH---HcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPC-YKLY--TKSFYEFV---VKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~--t~ef~~~~---~~~~L~pgGvl~~~~ 219 (297)
-...|...+.. ..|+ +.+.++.+ + +.-.|+|++++-+
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i-~~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKI-KASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhCCCeEEEEec
Confidence 87655421110 0111 11223321 2 3367889876654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.25 E-value=24 Score=32.82 Aligned_cols=115 Identities=18% Similarity=0.291 Sum_probs=64.3
Q ss_pred CcEEEEEeCCcee-EEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEEC
Q 022451 58 QDIALLDTKPFGK-ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI 134 (297)
Q Consensus 58 ~~i~V~~~~~~g~-~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEi 134 (297)
+.+.+++... |+ ...+||...+.-+.... -.+. .-++..+..+++++||+|.=+ .+..++...+..+|.+++.
T Consensus 85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa~--sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFET-GEVLAILDGTYLTQIRTGAL--SGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCCC-CceEEEEccchhhhhhHHHH--HHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 3566666554 44 33567766554332110 1111 123445678999999998544 2333444456789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
+++-.+...+.+... + ..++. ...|..+.+ ...|+|+.-.+.
T Consensus 161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 987765544433211 0 11222 246655555 358999987653
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=3.2 Score=40.90 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=77.2
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-------------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------------- 169 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l------------- 169 (297)
.-+++++-||.|++..-+... +...|.++|+|+...+.-+.+|.. +|....+.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 458999999999998877664 456788999999999998887631 133344445554431
Q ss_pred ---hccCCCceEEEEcCC-CCCC-CC----------------CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--C
Q 022451 170 ---ESRKESYDVIIGDLA-DPIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S 226 (297)
Q Consensus 170 ---~~~~~~yD~Ii~D~~-~~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--~ 226 (297)
...-...|+++..++ .+++ .+ +...|+ .++++. + +.++|.-+++=|+ ++.. .
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf-~~~~ri-i-~~~kPk~fvlENV--~gl~s~~ 235 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLF-FDVARI-I-DAKRPAIFVLENV--KNLKSHD 235 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHH-HHHHHH-H-HHhCCCEEEEeCc--Hhhhccc
Confidence 111235899988876 2221 11 001122 355654 3 5678886665554 2211 2
Q ss_pred CchHHHHHHHHHHhh
Q 022451 227 HTEVFSCIYNTLRQV 241 (297)
Q Consensus 227 ~~~~~~~i~~~l~~~ 241 (297)
....+..++..|.+.
T Consensus 236 ~g~~f~~i~~~L~~l 250 (467)
T PRK10458 236 KGKTFRIIMQTLDEL 250 (467)
T ss_pred ccHHHHHHHHHHHHc
Confidence 344677888888764
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.16 E-value=11 Score=35.34 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
.++.+||++|+|+ |..+.++++..+..+|++++.++.-.+.++++ +.. .-+.... .+..+.+.. ....+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT------DFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------cEeccccccchHHHHHHHHhCCCC
Confidence 4678999998642 33445566666655899999999998888763 221 0011111 112222322 22468
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..+.. +.++|+++ |.++.-.
T Consensus 256 d~vid~~g-----~~-------~~~~~-~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTG-----NA-------DLMNE-ALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhcccCCCEEEEEc
Confidence 98884321 11 34455 56788875 9887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=84.95 E-value=8.9 Score=37.20 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=53.1
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+++|+++|+|.=+ ....+++..+ .+|+++|+||.-.+.|++. +. +.. +..+.+ ...|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G~----------~~~--~~~e~v----~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-GY----------EVM--TMEEAV----KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-CC----------EEc--cHHHHH----cCCCEE
Confidence 367899999999643 3444555444 4899999999988888763 21 111 112223 347988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.-.. . ...+.....+.+++||+++.-
T Consensus 262 I~atG------~------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTG------N------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCC------C------HHHHHHHHHhcCCCCcEEEEe
Confidence 85421 1 122332135788999988543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.87 E-value=14 Score=33.73 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA 152 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~ 152 (297)
||.+...+.|..-+.+.+.. .......++|++||+|+-+- +..+.. .+..+|++++.+++-.+...+.+...
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~--- 174 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR--- 174 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh---
Confidence 45554455554434444421 11224568999999986443 333333 45678999999976555443333211
Q ss_pred CCCCCeEEEE-cchHHHHhccCCCceEEEEcCC
Q 022451 153 FSDPRLELVI-NDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 153 ~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
.+.+.+.. .+..+. -..+|+||.-.+
T Consensus 175 --~~~~~~~~~~~~~~~----~~~aDiVInaTp 201 (284)
T PRK12549 175 --FPAARATAGSDLAAA----LAAADGLVHATP 201 (284)
T ss_pred --CCCeEEEeccchHhh----hCCCCEEEECCc
Confidence 12233332 221111 245899988765
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=84.81 E-value=8.9 Score=37.32 Aligned_cols=42 Identities=33% Similarity=0.615 Sum_probs=29.3
Q ss_pred eEEEEccchhHHHHHHHh----c---CCCcEEEEEECCHHHHHH----HHhhhh
Q 022451 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLV 147 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----a~~~f~ 147 (297)
+|.+||+|+. .+..+.+ . .+..+|..+|+|++-++. |++.+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~ 54 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVE 54 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 6889999986 5544432 1 356899999999976665 555444
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=84.41 E-value=7.9 Score=38.41 Aligned_cols=113 Identities=12% Similarity=0.210 Sum_probs=68.1
Q ss_pred CCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhccCCCce
Q 022451 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~~~~~yD 177 (297)
...|.+.-||+|++..+..+. ....++++-|.++.+...|+.++.+... ..+...+..+|... +-.....+||
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D 295 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFE 295 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCC
Confidence 358999999999988665432 1235799999999999999988544321 11223333344321 1001235699
Q ss_pred EEEEcCCCC--CCCC--Cc---------------cCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~--~~~~--p~---------------~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.|+.+++.. |..+ |. ..--...|+.. +..+|++||...+-
T Consensus 296 ~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~aiI 354 (501)
T TIGR00497 296 VVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAAIV 354 (501)
T ss_pred EEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEEEE
Confidence 999998632 2111 10 00124457777 67899999965443
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.8 Score=35.39 Aligned_cols=86 Identities=15% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCceEE
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD~I 179 (297)
.+++|++||.|.-+. +...++..+ .+|++++.++...+.++.. + .+.+ ..+..+.+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence 579999999985332 333333343 5999999998876665542 1 1111 12222332 469999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
|.-.+. .+.+.+ +.+.++++++++
T Consensus 215 I~t~p~--------~~i~~~-----~l~~~~~g~vII 238 (296)
T PRK08306 215 FNTIPA--------LVLTKE-----VLSKMPPEALII 238 (296)
T ss_pred EECCCh--------hhhhHH-----HHHcCCCCcEEE
Confidence 986431 223333 345677877665
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.33 E-value=0.66 Score=43.60 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=55.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHH-------HhhhhhccCCCCCCCeEEEEcchHHHHhcc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
..+++=|+|=-.|||++...++.. .+-|.+.|||-.+++.. +.+|...+. .+-=+-+..+|.-.-.-.+
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh
Confidence 356777888888889988877764 46899999999999843 334443321 1122567777754322223
Q ss_pred CCCceEEEEcCCC
Q 022451 173 KESYDVIIGDLAD 185 (297)
Q Consensus 173 ~~~yD~Ii~D~~~ 185 (297)
...||.|++|++-
T Consensus 282 n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 282 NLKFDAIVCDPPY 294 (421)
T ss_pred cceeeEEEeCCCc
Confidence 5789999999973
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.07 E-value=13 Score=35.99 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=54.2
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+++|+++|+|.=+ .....+...+..+|++++.++.-.+ +++++ + ..+ +-..|..+.+ ..+|+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g--------~~~-~~~~~~~~~l----~~aDv 245 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-G--------GEA-IPLDELPEAL----AEADI 245 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-C--------CcE-eeHHHHHHHh----ccCCE
Confidence 456899999987433 2233333345568999999986654 44442 1 111 1113333333 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||.-...+ ..+.+.+.++. ..+.=+.++.+++....|
T Consensus 246 VI~aT~s~------~~~i~~~~l~~-~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 246 VISSTGAP------HPIIGKGMVER-ALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEECCCCC------CcEEcHHHHHH-HHhhccCCCeEEEEeCCC
Confidence 99876432 24456666655 321111244666665444
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.06 E-value=1.9 Score=40.80 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=39.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc----C----CCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
.|.+..+++||.|.|.++.-+++. . ...++..||++|+..+.=|+.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 466789999999999998777653 2 36799999999999988777664
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.02 E-value=13 Score=34.96 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=57.4
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~-~~~~y 176 (297)
....+||+.|+|+ |..+.++++..+..+|++++.+++-.+.++++ +.. .-+... ..+..+.+.. ....+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GAT------DCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC------eEEcccccchhHHHHHHHHhCCCC
Confidence 4578999998753 34556667766555899999999999998764 211 001111 0122222322 22368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..+.. +.+.|+++ |.++.-.
T Consensus 257 d~vid~~G-----~~-------~~~~~-~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFECIG-----NV-------NVMRA-ALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEECCC-----CH-------HHHHH-HHHHhhcCCCeEEEEe
Confidence 98874322 11 23344 45788886 9887553
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=83.74 E-value=5.6 Score=39.96 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=57.9
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hhcc-CCCceE
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~-~~~yD~ 178 (297)
.+++++|+|.=+ +++.+.+. ..+++++|.|++.++.+++. ..+++.+|+.+. +++. -++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 678999987432 33444433 35799999999998888752 367889998543 4332 367998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++....+.. . . ...-. +.+.++|+-.++...
T Consensus 485 viv~~~~~~--~---~----~~iv~-~~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGY--E---A----GEIVA-SAREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChH--H---H----HHHHH-HHHHHCCCCeEEEEE
Confidence 887765422 0 0 11222 234557777777654
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.72 E-value=16 Score=34.29 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=57.9
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc--chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~--Da~~~l~~-~~~~y 176 (297)
.++.+||++|+| .|..+.++++..+..+|++++.+++-.+.+++. +.. .-+..... |..+.+.. ....+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT------DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------EEEcccccchHHHHHHHHHhCCCC
Confidence 567899999864 233456666666555799999999999888763 211 00111111 23333322 22369
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+--.. .+ ..++. +.+.|+++ |.++.-.
T Consensus 258 d~vid~~g-----~~-------~~~~~-a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTFECIG-----NV-------KVMRA-ALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEEECCC-----Ch-------HHHHH-HHHhhccCCCeEEEEc
Confidence 98874321 11 34455 56788887 8887653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.3 Score=39.24 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=48.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~~ 175 (297)
..+.+|..||.|+..+...+.+. ..+|++||+||.-+.+-+-.+..... -|+ ++|...|+.. +..-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lklaA~R~---Lp~----h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLAAFRH---LPS----HEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHHHHhh---ccc----chhhHHHhhhhcccccchh
Confidence 45678999999987777777765 36899999999999887765542210 122 2366666532 2345
Q ss_pred ceEEEEc
Q 022451 176 YDVIIGD 182 (297)
Q Consensus 176 yD~Ii~D 182 (297)
||.-+..
T Consensus 133 yD~flae 139 (414)
T COG5379 133 YDRFLAE 139 (414)
T ss_pred hhccccc
Confidence 7766543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=83.62 E-value=3.7 Score=39.89 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=43.3
Q ss_pred eEEEEccchhHHHH-H---HHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCce
Q 022451 105 TIFIMGGGEGSTAR-E---ILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (297)
Q Consensus 105 ~VL~iG~G~G~~~~-~---l~~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD 177 (297)
+|.+||+|+-+.+. . ++. .....+|..+|+|++.++...+......... ....++. ..|..+.+. ..|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal~----~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREALD----GAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhc----CCC
Confidence 68899999844332 2 331 1234589999999988877655432110000 1223443 556544443 468
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|+.-..
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 8888775
|
linked to 3D####ucture |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=83.56 E-value=11 Score=34.78 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=59.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+ |-|..+.++++..+ .+|+++..+++-.+.+++.++.. .-+.... .|..+.+.. ....+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 56789999985 45666777777664 47888888888888887744321 0111111 133333322 23568
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+ |... + ..+.. +.++|+++|.++..
T Consensus 223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence 9887 4321 1 23445 57899999999864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=7.6 Score=35.87 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=52.0
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...+|++||+| ++.++..+.+. ..+|+.+..++. +..++. +.... .+.+..+..-.+..... ....+|+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~ 75 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDS---VHGDFHLPPVQAYRSAE-DMPPCDW 75 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEe---CCCCeeecCceEEcchh-hcCCCCE
Confidence 34589999988 34455555553 357888888762 322222 11110 01111111000001111 1357999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|++-.... . +.+.++. ++..+++++.++.
T Consensus 76 vilavK~~-------~--~~~~~~~-l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTT-------A--NALLAPL-IPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCC-------C--hHhHHHH-HhhhcCCCCEEEE
Confidence 99876422 1 2467777 7888999997654
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=15 Score=33.55 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..+.+||+.|+| .|..+.++++.....+|+++.-+++-.+.++++ +.. .-+.... .+..+.+....+.+|+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~~------~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GAD------LTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CCc------EEecccccccHHHHHHHhcCCCcE
Confidence 567899999853 233445555542245899999999999988653 321 0011111 2222334332235887
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++.+... .+.+.. +.++|+++|.++.-
T Consensus 234 vi~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 260 (338)
T PRK09422 234 AVVTAVA------------KAAFNQ-AVDAVRAGGRVVAV 260 (338)
T ss_pred EEEeCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 7766431 144556 57899999998754
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.41 E-value=43 Score=32.01 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=69.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-.+|.|+++|.|.-+=+.......-.++|.+.|+||.-.--|.- +-.++...+ .....-|+++
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M-----------dGf~V~~m~------~Aa~~gDifi 269 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM-----------DGFRVMTME------EAAKTGDIFV 269 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh-----------cCcEEEEhH------HhhhcCCEEE
Confidence 46889999998865543333322336799999999964322221 123333322 1123347666
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
.-. +. ....+.|-+.. ++ +|.++.|.++.++-.+...++......+++-|.|.-|.
T Consensus 270 T~T------Gn-kdVi~~eh~~~-Mk-----DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~ 325 (420)
T COG0499 270 TAT------GN-KDVIRKEHFEK-MK-----DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYE 325 (420)
T ss_pred Ecc------CC-cCccCHHHHHh-cc-----CCeEEecccccceeccHHHHHHhhhhHhccccCceEEE
Confidence 543 22 24456666555 43 67788898865444455556666566777788887774
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=83.31 E-value=23 Score=32.74 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=55.6
Q ss_pred eEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||+|. |.. +..++......+|..+|++++..+ .+...-... .+. +...+..+|-.. + ...|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence 589999985 333 343444332468999999987665 232221111 111 224555555322 2 45899999
Q ss_pred cCCCCCCCCCcc-Cc--ccHHHHHHHHc--ccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCY-KL--YTKSFYEFVVK--PRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~-~L--~t~ef~~~~~~--~~L~pgGvl~~~~ 219 (297)
-+..+...+... .| .+.+.++.++. +...|+|++++-+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 887654221100 01 12223333111 3366889887764
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.26 E-value=0.29 Score=45.02 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=59.3
Q ss_pred CCCCeEEEEccchhHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAR-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.....|.|+=+|-|+++. .+.. .+...|.++|.||..++..|+....+. ...|..++.+|-|.- ......|-|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrV 266 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRV 266 (351)
T ss_pred cccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhe
Confidence 345778899999999988 5454 568899999999999999999877653 245667777876542 235678888
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
.+.+-
T Consensus 267 nLGLl 271 (351)
T KOG1227|consen 267 NLGLL 271 (351)
T ss_pred eeccc
Confidence 88764
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.20 E-value=9.5 Score=35.75 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc--chHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~--Da~~~l~~-~~~~y 176 (297)
.++.+||+.|+|. |..+.++++..+...|++++.++.-.+.++++ +.. .-+..... |..+.+.. ..+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GAT------ECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCC------eecccccccchHHHHHHHHhCCCC
Confidence 4578999987642 33345556666656789999888888888653 321 11111112 33333322 23569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCC-CCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~-pgGvl~~~ 218 (297)
|+|+ |... . ...+.. +.+.|+ ++|.++..
T Consensus 255 d~vi-d~~g----~-------~~~~~~-~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVIG----S-------ADTLKQ-ALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECCC----C-------HHHHHH-HHHHhccCCCEEEEE
Confidence 9888 4321 1 133444 567888 99998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.04 E-value=15 Score=34.17 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
...+|.+||+|. |.....++...+..++..+|++++..+ +... +.... .......++.. +|-. -+ ..-|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~-~~~~~~~~i~~~~d~~-~l----~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFS-TLVGSNINILGTNNYE-DI----KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhc-cccCCCeEEEeCCCHH-Hh----CCCCE
Confidence 346899999987 666555555444467999999987644 2211 11111 11122345553 4532 33 34699
Q ss_pred EEEcCCCCCCCCC-ccC------cccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGP-CYK------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~------L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+...-.+...+. ... -.-+++.+. +.+ ..|++++++-+
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvs 122 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVT 122 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence 9987643321110 000 112345555 444 46899766544
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.59 E-value=4.3 Score=36.32 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHH---hccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAEL---ESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l---~~~~~~y 176 (297)
+.-++||||.|.-++==-+. +.+ .-+.++-|+|+..++.|+.....+.. + ...++++.+ |-...+ ....++|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~-l-~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPG-L-ERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcc-h-hhheeEEeccCcccccccccccccee
Confidence 44578999998776522121 123 35899999999999999998764411 1 123444332 222222 2235899
Q ss_pred eEEEEcCCCC
Q 022451 177 DVIIGDLADP 186 (297)
Q Consensus 177 D~Ii~D~~~~ 186 (297)
|+.+++++.+
T Consensus 155 d~tlCNPPFh 164 (292)
T COG3129 155 DATLCNPPFH 164 (292)
T ss_pred eeEecCCCcc
Confidence 9999998743
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.58 E-value=17 Score=33.96 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
...++||+.|+|+ |..+.++++..+...+++++.++.-.+.++++ +.. .-+.....+..+.+.. ....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcE
Confidence 4568899997643 44556666666666799999999888887763 210 0000001122222221 2456998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+--... + ..+.. +.+.|+++|.++...
T Consensus 258 vld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV-----P-------AVIEQ-AVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC-----c-------HHHHH-HHHHhccCCEEEEeC
Confidence 8854321 1 23445 578899999987653
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=82.52 E-value=4.5 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=22.9
Q ss_pred eEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHH
Q 022451 105 TIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEV 138 (297)
Q Consensus 105 ~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~v 138 (297)
+||++|+| .|+-....+...+..+++.+|.|-.-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 58999997 33333333334578999999987543
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=4.8 Score=37.15 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=53.1
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--hhhccCCCCCCCeEEE--EcchHHHHhccCCCce
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLELV--INDARAELESRKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--f~~~~~~~~~~rv~~~--~~Da~~~l~~~~~~yD 177 (297)
.+|+++|+| +|.++..|.+. ...|+.++-.++-++..++. +.... ......+. ..+ ....+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence 369999988 34456666553 35799999987555555432 21110 01111111 111 11235799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+|++-.- ...+.+.++. ++..+.++..++
T Consensus 73 ~viv~vK---------~~~~~~al~~-l~~~l~~~t~vv 101 (305)
T PRK05708 73 RLLLACK---------AYDAEPAVAS-LAHRLAPGAELL 101 (305)
T ss_pred EEEEECC---------HHhHHHHHHH-HHhhCCCCCEEE
Confidence 9998742 1224577788 789999998554
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=82.49 E-value=4.4 Score=43.75 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=31.1
Q ss_pred ChhhHHHHHHHHHH--hcCCCCCeEEEEccchh-H-HHHHHHhcCCCcEEEEEECCH
Q 022451 84 DEFIYHESLVHPAL--LHHPNPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 84 d~~~y~e~l~~~~l--~~~~~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
|+..|.+.+..... ...-...+||++|||+= + ++..|. ..+..+|+.+|-+.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~-laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLV-LAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCe
Confidence 45567766532221 11224578999999742 2 233333 35789999999875
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.39 E-value=11 Score=35.49 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEE-EcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD 177 (297)
...++||+.|+| -|..+.++++..+ .+|++++.+++-. +.++++ +.. .++ ..+. +.+......+|
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~~-Ga~---------~vi~~~~~-~~~~~~~~~~D 249 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINRL-GAD---------SFLVSTDP-EKMKAAIGTMD 249 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHhC-CCc---------EEEcCCCH-HHHHhhcCCCC
Confidence 356789998865 3344566666654 4688887776543 344442 211 011 0111 11222123589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+ |... .+ ..++. +.+.|+++|.++.-
T Consensus 250 ~vi-d~~g----~~-------~~~~~-~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YII-DTVS----AV-------HALGP-LLGLLKVNGKLITL 277 (360)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhcCCcEEEEe
Confidence 888 4331 11 33455 56899999998754
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=82.34 E-value=14 Score=35.39 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc--cCC
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES--RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~--~~~ 174 (297)
...++||+.|+| .|..+.++++..+...|.++|.++.-.++|++. +.. .+.. .+..+.+.. ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga~---------~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GCE---------TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CCe---------EEecCCcccHHHHHHHHcCCC
Confidence 457889997665 233445666666666677789999889999874 211 1111 123233322 224
Q ss_pred CceEEEEcCCCCCCCCCcc-Cccc-HHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCY-KLYT-KSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~-~L~t-~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+--.-.+....+.. .... ...++. +.+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEee
Confidence 6898875443221000000 0001 124566 568999999998653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.31 E-value=11 Score=35.31 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~~~y 176 (297)
.+..+||+.|+| .|..+.++++..+..+|++++.+++-.+.++++ +.. .-+.... .+..+.++. ....+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GVT------EFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcccccchhHHHHHHHHhCCCC
Confidence 467899999864 233445666666555899999999999988763 321 0011111 112222322 23368
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+++--.. . ...+.. +.+.++++ |.+++..
T Consensus 259 d~vid~~G-----~-------~~~~~~-~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSFECTG-----N-------IDAMIS-AFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEEECCC-----C-------hHHHHH-HHHHhhcCCCEEEEEC
Confidence 97764321 1 134444 46788896 9887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.20 E-value=16 Score=32.28 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=50.6
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--E---cchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--I---NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~---~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~ 202 (297)
+|..||=||.|.++-++|.... |..+++ . +.|...+... +-|+|++|.+-|...+ -+++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~G-------i~lL~ 66 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNG-------IELLP 66 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCcc-------HHHHH
Confidence 5789999999999999998643 333332 2 2344445432 3499999998665222 27788
Q ss_pred HHHcccCCCCcEEEEec
Q 022451 203 FVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 203 ~~~~~~L~pgGvl~~~~ 219 (297)
. ++..=-+..++++..
T Consensus 67 ~-ir~~~~~~DVI~iTA 82 (224)
T COG4565 67 E-LRSQHYPVDVIVITA 82 (224)
T ss_pred H-HHhcCCCCCEEEEec
Confidence 7 666666677777764
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.09 E-value=2 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999984 44444444445789999998664
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.96 E-value=10 Score=34.30 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=52.2
Q ss_pred eEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +.. . ...+..+ + .+ .|+||+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~---------~-~~~~~~~-~---~~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV---------D-EIVSFEE-L---KK-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC---------c-ccCCHHH-H---hc-CCEEEEe
Confidence 588999884 55666666543234799999999887776542 110 0 0122222 2 12 7999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+... ..+.+.. +.. ++++.++ +..
T Consensus 66 vp~~~---------~~~~~~~-l~~-l~~~~iv-~d~ 90 (275)
T PRK08507 66 IPVDA---------IIEILPK-LLD-IKENTTI-IDL 90 (275)
T ss_pred CcHHH---------HHHHHHH-Hhc-cCCCCEE-EEC
Confidence 75321 2356667 667 8877655 444
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.95 E-value=39 Score=31.24 Aligned_cols=107 Identities=17% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
....+|.+||+| +|.++..+.+. ..+|++++.++. .+.++++ + +.. ..|..+.+. ...|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~-~~~a~~~-g----------v~~-~~~~~e~~~---~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDY-SDIAAEL-G----------VSF-FRDPDDFCE---EHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccH-HHHHHHc-C----------Cee-eCCHHHHhh---CCCCE
Confidence 456789999988 44556665553 257999999874 2444431 1 121 344444332 34799
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
|++..+.. ...+.++. + ...++++. +++...+ .. ....+.+++.++.
T Consensus 96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~S-----vK---~~~~~~~~~~l~~ 143 (304)
T PLN02256 96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVLS-----VK---EFPKNLLLQVLPE 143 (304)
T ss_pred EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecCC-----ch---HHHHHHHHHhCCC
Confidence 99976421 13466666 5 45677776 4455432 11 2445566666654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.81 E-value=20 Score=32.84 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=54.7
Q ss_pred CeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|.+||+|. |......+...+..+|..+|++++..+....-+.... .......++.. .|- +-+ ..-|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~-~~~----~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDY-EDI----AGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCH-HHH----CCCCEEEE
Confidence 4799999987 5554444443332289999999887543211111110 00111234443 442 222 34799998
Q ss_pred cCCCCCCCCCc-cC------cccHHHHHHHHcccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPC-YK------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~-~~------L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
....|...+.. .. -.-+++++. +.+. .|++++++.++
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN 120 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN 120 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence 76544421110 00 012344454 4444 47887776654
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=81.75 E-value=14 Score=33.69 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=35.8
Q ss_pred cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHH
Q 022451 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVV 139 (297)
Q Consensus 75 dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi 139 (297)
||.+...+.|-.-+.+.+...........++||+||+|+-+- +..+.+ .+..+|+++..+++-.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-~G~~~i~I~nRt~~ka 162 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-LGVTDITVINRNPDKL 162 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHH
Confidence 454444455544444444321100113568999999875543 233333 4567899999986543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.73 E-value=11 Score=32.90 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=45.9
Q ss_pred CCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh---
Q 022451 102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE--- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~--- 170 (297)
.+++||+.|++ |.++..+++. ....+|+++..+++-++.....+... ..+++++..|..+ .+.
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 46889999854 4444333321 12358999999988766555443221 2457777777532 121
Q ss_pred ccCCCceEEEEcCC
Q 022451 171 SRKESYDVIIGDLA 184 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~ 184 (297)
...++.|+|+....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 12356899998775
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=3.7 Score=38.36 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcC--CCcEEEEEECCHHHHHHH-HhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFC-KSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a-~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
..++||+.| |+|.++..+.++. ...+|+++|..+.-.... ........ .....+++++.+|.++. +...-+.+
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS-EEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc-cccCCceEEEEccCCCHHHHHHHhhCC
Confidence 457899999 5677665555431 235899998754321111 11111000 00124688999998642 22222458
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+||+-+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99998875
|
|
| >PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species | Back alignment and domain information |
|---|
Probab=81.30 E-value=3.9 Score=36.45 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..-+++|++|+- +|......+... .+|++|||.|.+.++.. +++++. .++......||+|
T Consensus 40 ~~~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll~------------~~i~F~-----~~~~~~~~~~DlI 100 (252)
T PF06690_consen 40 EEFKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELLN------------ENIKFM-----EFRNGLEGNPDLI 100 (252)
T ss_pred cccceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHhc------------CCCcee-----eccCCCCCCCCEE
Confidence 345699999974 555544444432 38999999999977753 445544 2233334568877
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
+ |.+
T Consensus 101 I-D~T 104 (252)
T PF06690_consen 101 I-DTT 104 (252)
T ss_pred E-ECC
Confidence 6 444
|
The function of this family is unknown. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=13 Score=34.07 Aligned_cols=98 Identities=22% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.+||+.|+|+ |..+.++++. .+...+.+++.+++-.++++++- .. .-+.....+..+.+......+|+
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~------~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-AD------WVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-Cc------EEecCccccHHHHHhcCCCCCCE
Confidence 4567999998542 2233444453 35667899999999999888752 11 00111112333334322223455
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+ |... .+ .-+.. ..+.|+++|.++.-
T Consensus 232 vi-d~~g----~~-------~~~~~-~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 II-DAAC----HP-------SILEE-AVTLASPAARIVLM 258 (339)
T ss_pred EE-ECCC----CH-------HHHHH-HHHHhhcCCEEEEE
Confidence 55 4321 11 23455 56899999998764
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=81.28 E-value=17 Score=33.39 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=56.2
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+..+||+.|+| .|..+.++++..+..+|++++.++.-.+.++++ +.. .-+.....+....+.. ....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GAT------HTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC------ceeccccccHHHHHHHHhCCCCCC
Confidence 456889997653 222345556655546789999999888887764 211 1112222233222222 234699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+- ... . ...++. +.+.|+++|.++..
T Consensus 238 ~vld-~~g----~-------~~~~~~-~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVIE-AVG----I-------PATFEL-CQELVAPGGHIANV 265 (345)
T ss_pred EEEE-CCC----C-------HHHHHH-HHHhccCCcEEEEe
Confidence 8883 321 1 133455 56899999998754
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=81.22 E-value=5.8 Score=34.45 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=25.0
Q ss_pred HHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEEC
Q 022451 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI 134 (297)
Q Consensus 96 ~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEi 134 (297)
|++..-..++||+||+|.=+. +..+++. ..+|++|+.
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~ 41 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISP 41 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcC
Confidence 455556789999999985443 3455554 368998854
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=81.15 E-value=6.4 Score=37.25 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
.+++||+.| |+|.++..+.+. .+..+|.+++.++.-.... ...... ...++++++.+|..+. +...-+.+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l---~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHL---LEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhh---hccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 467899998 567766655542 1235799998765432211 111000 0125799999997543 32222358
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+||+-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99998765
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=81.09 E-value=32 Score=32.01 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
+..+|.+||+|. |. ++..++...-..++..+|++++..+-...-+.... .+... .+++. +|..+ + ...|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-T----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-h----CCCCE
Confidence 345899999873 22 23333333334689999998865433222122111 11112 25554 66433 3 34799
Q ss_pred EEEcCCCCCCCCC-ccCcc------cHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGP-CYKLY------TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~------t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++.+-.+...+. ...|+ -+++.+. +++. +|+|++++-++
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~-i~~~-~p~~~vivvsN 121 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPK-LVKY-SPNAILLVVSN 121 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHh-CCCcEEEEccC
Confidence 9986654432111 00111 1223334 3444 89998876653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=81.04 E-value=21 Score=34.51 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCCeEEEEccchhH-H-HHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~-~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++|+++|+|.=+ . +..+.. .+..+|++++.++.-.+ +++++ +. . .+-..|..+.+ ..+|
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~~-g~--------~-~i~~~~l~~~l----~~aD 242 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKEL-GG--------E-AVKFEDLEEYL----AEAD 242 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHc-CC--------e-EeeHHHHHHHH----hhCC
Confidence 456899999986332 2 333333 45578999999986543 44432 10 1 11112333333 3589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+||.....+ ..+.+.+.++. +.. -++.+.+++....|
T Consensus 243 vVi~aT~s~------~~ii~~e~l~~-~~~-~~~~~~~viDla~P 279 (417)
T TIGR01035 243 IVISSTGAP------HPIVSKEDVER-ALR-ERTRPLFIIDIAVP 279 (417)
T ss_pred EEEECCCCC------CceEcHHHHHH-HHh-cCCCCeEEEEeCCC
Confidence 999875432 24556677666 321 12245566665444
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=80.57 E-value=2.1 Score=43.71 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=26.2
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~ 137 (297)
...+||++|+|+ |+. ++.|++ .+..+|+.||-|-.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~V 373 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGKV 373 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEE
Confidence 357899999996 654 455554 57899999997643
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.56 E-value=31 Score=32.15 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=42.5
Q ss_pred CCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEE
Q 022451 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~I 179 (297)
.++|.+||+|. |.....++...+...|..+|++++..+. +....... .......++.. +|- +-+ ...|+|
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~--~~~~~~~~I~~~~d~-~~l----~~aDiV 78 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN--VIAGSNSKVIGTNNY-EDI----AGSDVV 78 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh--hccCCCeEEEECCCH-HHh----CCCCEE
Confidence 36899999986 4444444433344569999999986421 11111111 11223346664 663 222 347999
Q ss_pred EEcCCCC
Q 022451 180 IGDLADP 186 (297)
Q Consensus 180 i~D~~~~ 186 (297)
+...-.+
T Consensus 79 I~tag~~ 85 (321)
T PTZ00082 79 IVTAGLT 85 (321)
T ss_pred EECCCCC
Confidence 9866443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=80.34 E-value=8.9 Score=38.19 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=65.1
Q ss_pred CCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchH
Q 022451 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDAR 166 (297)
Q Consensus 102 ~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------~~rv~~~~~Da~ 166 (297)
+.++|.+||+| +..++..+++. ..+|+++|.+++.++.+++++... ...+. -.|++.. .|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~- 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL- 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH-
Confidence 45689999998 34566666654 468999999999998776543210 00000 0123322 332
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+-+ ...|+||-..++.. -...++|.. +.+.++|+-+|+.|+.+
T Consensus 80 ~~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 80 HAL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 222 35899998876422 124567888 78888998888888743
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.08 E-value=2.1 Score=41.02 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.8
Q ss_pred CCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECC
Q 022451 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 102 ~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid 135 (297)
...+|+++||| +|+...+.+...+..+|+.||-|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999997 45555555555578999999988
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.06 E-value=42 Score=31.29 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred cEEEEEeCCcee-EEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECC
Q 022451 59 DIALLDTKPFGK-ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID 135 (297)
Q Consensus 59 ~i~V~~~~~~g~-~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid 135 (297)
.|.+++... |+ ...+||...+.-+... .-.+. .-++..++++++.+||+|.=+ .+..+....+...|.+++.+
T Consensus 88 ~i~L~d~~t-G~p~aild~~~lT~~RTaA--~sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 88 VIILNSPET-GFPLAIMDGTYLTDMRTGA--AGGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred EEEEEeCCC-CceEEEEcCccHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 455666554 33 3356776544433211 01111 123445678999999998532 23444445678899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
++-.+...+.+... ...++. ...|..+.+ + .|+|++-.+.
T Consensus 164 ~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~l----~-aDiVv~aTps 203 (326)
T PRK06046 164 KSSAEKFVERMSSV----VGCDVT-VAEDIEEAC----D-CDILVTTTPS 203 (326)
T ss_pred HHHHHHHHHHHHhh----cCceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence 98776655544311 011232 245655544 2 7999987653
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.05 E-value=16 Score=33.26 Aligned_cols=95 Identities=20% Similarity=0.280 Sum_probs=55.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc---chHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~---Da~~~l~~~~~~y 176 (297)
..+.+||++|+|. |..+.++++..+...|.+++.+++..+.++++ +.. .++.. +....-....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GAT---------ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCe---------EEecCCCCCHHHHHHhcCCCC
Confidence 4568999997642 44556666655544589999999988887653 211 11111 1111111134569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+..... ...... +.++|+++|.++.-
T Consensus 228 d~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATGV------------PKTLEQ-AIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence 999854211 134555 56889999998754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 297 | ||||
| 3anx_A | 314 | Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR | 5e-55 | ||
| 1uir_A | 314 | Crystal Structure Of Polyamine Aminopropyltransfeas | 1e-54 | ||
| 3o4f_A | 294 | Crystal Structure Of Spermidine Synthase From E. Co | 5e-41 | ||
| 1xj5_A | 334 | X-Ray Structure Of Spermidine Synthase From Arabido | 1e-35 | ||
| 1iy9_A | 275 | Crystal Structure Of Spermidine Synthase Length = 2 | 1e-34 | ||
| 1mjf_A | 281 | Putative Spermidine Synthetase From Pyrococcus Furi | 9e-34 | ||
| 2o05_A | 304 | Human Spermidine Synthase Length = 304 | 2e-33 | ||
| 3rw9_A | 304 | Crystal Structure Of Human Spermidine Synthase In C | 2e-33 | ||
| 1jq3_A | 296 | Crystal Structure Of Spermidine Synthase In Complex | 1e-32 | ||
| 2b2c_A | 314 | Cloning, Expression, Characterisation And Three- Di | 9e-31 | ||
| 3bwb_A | 304 | Crystal Structure Of The Apo Form Of Spermidine Syn | 5e-30 | ||
| 2hte_A | 283 | The Crystal Structure Of Spermidine Synthase From P | 7e-27 | ||
| 2pwp_A | 282 | Crystal Structure Of Spermidine Synthase From Plasm | 7e-27 | ||
| 2pss_A | 321 | The Structure Of Plasmodium Falciparum Spermidine S | 8e-27 | ||
| 2e5w_A | 280 | Crystal Structure Of Spermidine Synthase From Pyroc | 9e-27 |
| >pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314 | Back alignment and structure |
|
| >pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314 | Back alignment and structure |
|
| >pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294 | Back alignment and structure |
|
| >pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334 | Back alignment and structure |
|
| >pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275 | Back alignment and structure |
|
| >pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281 | Back alignment and structure |
|
| >pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304 | Back alignment and structure |
|
| >pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304 | Back alignment and structure |
|
| >pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296 | Back alignment and structure |
|
| >pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314 | Back alignment and structure |
|
| >pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304 | Back alignment and structure |
|
| >pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283 | Back alignment and structure |
|
| >pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282 | Back alignment and structure |
|
| >pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321 | Back alignment and structure |
|
| >pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus Horikoshii Ot3 Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-121
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 4/237 (1%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
++ E + + ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE
Sbjct: 6 YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
+LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ +
Sbjct: 66 TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
+ AF DPR LVI+DARA LE +E YDV+I DL DP+ E P LYT FY VK
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRL-VKAH 184
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
LNP G+ Q G + +H V ++ T+R+ F+YV Y HIP F +G+++ S
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLAS 240
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-119
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 6/241 (2%)
Query: 27 RKSCWY-EEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
R+ WY E N+ +N ++++G++ Q I + + G +DG + E DE
Sbjct: 14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 73
Query: 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
F+YHE L H + HPNPK + I+GGG+G T RE+L+H +VEK ++C++D V+E + Y
Sbjct: 74 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 133
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
L F DPR E+VI + + K +DVII D DP G L+T+ FY+
Sbjct: 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACY 192
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMV 264
L +G+F + F F Y + +VF Y + ++ + W +
Sbjct: 193 D-ALKEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249
Query: 265 S 265
S
Sbjct: 250 S 250
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-118
Identities = 79/236 (33%), Positives = 137/236 (58%), Gaps = 6/236 (2%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
WY E+ +N + +N LHT +T +Q + +++T+ FG L +DG + ++E DEF+YHE
Sbjct: 4 WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
+ H L HPNP+ + ++GGG+G REIL+H +V+K + DID +V+E+ K +L
Sbjct: 64 MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
DPR+++ ++D + + YDVI+ D +P+ GP L+TK FY + K L
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-ALK 180
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS 265
+GIFV Q + E+ + + ++++F Y+A+IP++ + W + + S
Sbjct: 181 EDGIFVAQTDN--PWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGS 234
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-117
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 8/258 (3%)
Query: 11 SQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPF 68
S G D + + W+ E S + +LH +RYQDI + +K +
Sbjct: 2 SMEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEK 128
G LV+DG +Q E DEF Y E + + L HPNP+ + I+GGG+G RE+++H +VE
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 129 VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188
VV C+IDE+V++ K +L +S +L L + D ++ ++++DVII D +DP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM- 180
Query: 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248
GP L+ +S+Y+ +K L +G+ Q + H ++ + + +F V
Sbjct: 181 -GPAESLFKESYYQL-MKTALKEDGVLCCQGEC--QWLHLDLIKEMRQFCQSLFPVVAYA 236
Query: 249 SAHIPSF-ADTWGWIMVS 265
IP++ + G+++ S
Sbjct: 237 YCTIPTYPSGQIGFMLCS 254
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-116
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 8/238 (3%)
Query: 31 WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E +S + IL+ +++YQ++ + ++ +GK LV+DG +Q E DEF Y
Sbjct: 5 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
HE + H + PK + ++GGG+G RE+ ++K+VE + +C+IDE V+E K Y
Sbjct: 65 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
+ D R+ + I DA LE+ +YDVII D +DPI GP L+ ++FYE +
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 181
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS 265
L P G V Q ++ H + +++FK V + IP++ G + S
Sbjct: 182 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCS 237
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281 | Back alignment and structure |
|---|
Score = 333 bits (857), Expect = e-115
Identities = 77/241 (31%), Positives = 129/241 (53%), Gaps = 13/241 (5%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
+ E +F + ++ ++YQ I + +T+ FG+ L +DG +Q + E YHE
Sbjct: 4 AFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHE 63
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
LVHPA+L HP PK + ++GGG+G T RE+L+H V++V+M +IDE+V+ K + ++
Sbjct: 64 PLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDN 122
Query: 151 EAF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204
+ +L I D ++ +DVII D DP+ GP L+++ FY +V
Sbjct: 123 GLLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPV--GPAKVLFSEEFYRYV 179
Query: 205 VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMV 264
LN GI+VTQAG ++ T+ Y +++VF V YS + +A W +++
Sbjct: 180 YD-ALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVG 236
Query: 265 S 265
Sbjct: 237 V 237
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-115
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 8/238 (3%)
Query: 31 WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E +S + IL+ +++YQ++ + ++ +GK LV+DG +Q E DEF Y
Sbjct: 43 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
HE + H + PK + ++GGG+G RE+ ++K+VE + +C+IDE V+E K Y
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
+ D R+ + I DA LE+ +YDVII D +DPI GP L+ ++FYE +
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYN-A 219
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS 265
L P G V Q ++ H + +++FK V + IP++ G + S
Sbjct: 220 LKPNGYCVAQCES--LWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCS 275
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-115
Identities = 74/236 (31%), Positives = 131/236 (55%), Gaps = 6/236 (2%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
+S + +L +++YQD+ + ++ +G LV+DG +Q+ E DEF Y E
Sbjct: 37 QEMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQE 96
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
L H + HP+PK + I+GGG+G RE+L+H++VEKV MC+IDE V++ K +L
Sbjct: 97 MLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS 156
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
FS P+L+L D L++ K +DVII D +DP+ GP L+ +S+YE ++ L
Sbjct: 157 CGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYEL-LRDALK 213
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMVS 265
+GI +Q ++ H + + + R++F V + + ++ + G+++ +
Sbjct: 214 EDGILSSQGES--VWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICA 267
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-111
Identities = 86/264 (32%), Positives = 139/264 (52%), Gaps = 10/264 (3%)
Query: 7 SNGISQANGADAKNVALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLD 64
+ + NG K A W+ E S + +L G++ YQD+ +
Sbjct: 23 AATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQ 82
Query: 65 TKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK 124
+ +GK LV+DG +Q E DE Y E + H L PNPK + ++GGG+G RE+ RH
Sbjct: 83 SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA 142
Query: 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183
++E++ MC+ID+ VV+ K + + DPR+ LVI D A L++ E SYD +I D
Sbjct: 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS 202
Query: 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243
+DPI GP +L+ K F++ V + L P G+ TQA ++ H ++ I + R++FK
Sbjct: 203 SDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFK 257
Query: 244 YVVPYS-AHIPSFAD-TWGWIMVS 265
V Y+ +P++ G+++ S
Sbjct: 258 GSVNYAWTSVPTYPSGVIGFMLCS 281
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-105
Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 13/246 (5%)
Query: 28 KSCWYEEEIEE--NLRWSFALNSILHTGETRYQDIALLDTKP---FGKALVIDGKLQSAE 82
W+ EE ++ S + +L+ T++Q + + ++ P +G + +DG +Q +
Sbjct: 16 SGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTD 75
Query: 83 VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC 142
DEF+YHE L H +L HP P+ + I+GGG+G RE+LRH TVE + DID EV+E
Sbjct: 76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS 135
Query: 143 KSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFY 201
K + + +DPR + + D A + ++ +YDV+I D DP GP KL+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPA--GPASKLFGEAFY 193
Query: 202 EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFA-DTW 259
+ V++ L P+GI Q I+ E+ + +R+ F V H+P++ +
Sbjct: 194 KDVLR-ILKPDGICCNQGES--IWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSI 250
Query: 260 GWIMVS 265
G ++ S
Sbjct: 251 GTLVCS 256
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 7e-88
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 22/235 (9%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
W +EI LR + + + L + + + + +K FG+ +++ +L + I E
Sbjct: 2 WITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQLLF-KNFLHIESE 60
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
L H K + I+ G + A ++ ++ + DE++++ S+
Sbjct: 61 LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFF---- 114
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
F + + A+ L+ + YD+I I L L
Sbjct: 115 PHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQEPDI--HRIDGLKR----------MLK 162
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
+G+F++ A + VF +P+ A + + G+I S
Sbjct: 163 EDGVFISVAKH--PLLEHVSMQNALKNMGGVFSVAMPFVAPLRILS-NKGYIYAS 214
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-44
Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 24/231 (10%)
Query: 48 SILHTGETRYQDIALLD--TKPFGKALVIDGKLQSA------EVDEFIYHESLVHPALLH 99
I T E Y I L G + I+G S + EF Y + A
Sbjct: 22 PIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAF 81
Query: 100 -----HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS 154
+ I +GGG + AR + + ++D E+ + + +
Sbjct: 82 IDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWF----DIPR 137
Query: 155 DPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213
PR+++ ++DAR ES S DVII D+ T F+E L P G
Sbjct: 138 APRVKIRVDDARMVAESFTPASRDVIIRDVFAG--AITPQNFTTVEFFE-HCHRGLAPGG 194
Query: 214 IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMV 264
++V G S + +VF++V + +G I++
Sbjct: 195 LYVANCGD---HSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIIL 242
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 7e-09
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 96 ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAFS 154
A L N + + +G G+G+ + +L+ E++ D+ +E + L +
Sbjct: 23 AALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQ 82
Query: 155 DPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214
RL+L+ + R YD + + IE +L +E V+ P+ +
Sbjct: 83 WERLQLIQGAL-TYQDKRFHGYDAAT--VIEVIEHLDLSRLGA---FERVLFEFAQPKIV 136
Query: 215 FVT----------QAGPAGIFSH 227
VT PAG H
Sbjct: 137 IVTTPNIEYNVKFANLPAGKLRH 159
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 96 ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD 155
A+L N K + +G GEG+ +L+ K+ E++ D+ V+E K L +++
Sbjct: 23 AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQ 82
Query: 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215
+ + + + R YD + + IE +L +E V+ P+ +
Sbjct: 83 RKRISLFQSSLVYRDKRFSGYDAAT--VIEVIEHLDENRLQA---FEKVLFEFTRPQTVI 137
Query: 216 VT 217
V+
Sbjct: 138 VS 139
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164
T++ +GGG GS A E LR V +I EE E S N V
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS----NAINLGVSDRIAVQQG 83
Query: 165 ARAELESRKESYDVIIGDLADPIEG 189
A + ++ DVI G
Sbjct: 84 APRAFDDVPDNPDVIFIGGGLTAPG 108
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 5e-04
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 11/99 (11%)
Query: 96 ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA--- 152
LL+ NPK + G E+V + DI E+ E K +++N +
Sbjct: 41 VLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 100
Query: 153 --------FSDPRLELVINDARAELESRKESYDVIIGDL 183
+ + + +DA + R + I D
Sbjct: 101 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP 139
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADP 186
+ D + E K+ + +S R+ +++ + +SY ++ G P
Sbjct: 83 TLTCIDPESEHQRQAKALF--REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ-VSP 139
Query: 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216
++ K + P L G V
Sbjct: 140 MD----LKAL----VDAAW-PLLRRGGALV 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 100.0 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 100.0 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 100.0 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 100.0 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 100.0 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 100.0 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 100.0 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 100.0 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 100.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 100.0 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 100.0 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 100.0 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 100.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 100.0 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 100.0 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 100.0 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.58 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.58 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.58 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.57 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.57 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.56 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.54 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.54 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.51 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.51 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.51 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.51 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.5 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.49 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.49 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.49 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.48 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.48 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.48 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.46 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.46 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.46 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.46 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.46 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.45 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.45 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.44 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.44 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.44 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.43 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.43 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.43 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.42 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.42 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.42 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.42 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.41 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.41 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.41 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.38 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.37 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.37 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.37 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.37 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.36 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.36 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.35 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.35 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.34 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.34 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.34 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.33 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.33 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.33 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.33 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.33 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.32 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.32 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.32 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.31 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.31 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.3 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.3 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.3 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.3 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.3 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.3 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.3 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.29 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.29 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.29 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.28 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.28 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.28 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.27 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.27 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.27 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.26 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.26 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.26 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.26 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.26 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.26 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.26 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.26 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.26 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.26 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.25 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.25 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.24 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.24 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.23 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.23 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.22 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.22 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.22 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.22 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.22 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.21 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.21 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.21 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.21 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.21 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.2 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.2 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.2 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.2 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.19 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.19 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.19 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.19 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.19 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.19 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.19 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.19 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.18 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.18 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.18 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.18 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.17 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.17 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.17 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.17 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.17 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.16 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.16 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.16 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.15 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.15 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.15 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.15 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.15 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.15 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.14 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.14 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.14 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.14 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.14 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.14 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.14 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.14 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.13 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.13 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.12 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.12 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.12 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.12 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.12 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.12 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.12 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.12 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.11 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.11 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.11 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.1 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.09 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.09 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.08 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.07 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.05 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.04 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.04 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.02 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.02 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.01 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.01 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.01 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.0 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.99 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.99 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.98 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.98 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.98 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.98 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.97 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.96 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.96 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.96 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.96 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.94 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.94 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.94 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.94 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.94 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.94 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.93 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.93 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.92 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.92 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.92 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.9 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.89 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.89 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.88 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.88 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.83 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.82 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.81 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.81 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.8 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.76 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.76 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.75 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.75 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.75 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.74 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.74 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.73 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.73 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.72 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.72 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.71 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.71 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.7 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.67 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.65 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.63 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.63 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.63 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.62 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.61 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.6 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.6 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.58 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.54 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.53 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.53 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.5 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.5 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.49 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.47 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.44 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.44 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.41 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.38 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.37 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.36 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.36 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.31 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.29 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.19 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.12 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.07 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.05 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.03 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.96 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.86 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.56 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.49 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.49 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.48 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.36 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.36 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.34 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.15 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.14 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.11 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.98 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.95 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.77 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.65 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.57 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.5 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.39 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.36 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.36 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.24 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.18 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.12 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.11 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.97 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.84 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.73 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.66 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.65 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.58 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.52 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.45 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.37 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.36 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.36 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.3 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.27 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.2 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.17 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.12 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.1 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.1 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.09 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.96 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.89 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.82 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.76 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.75 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.7 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.59 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.55 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 94.53 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.51 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.44 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.44 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.41 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.38 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.37 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.2 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.96 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.96 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.95 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.83 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.78 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.69 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.66 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.58 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.51 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.51 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.41 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.25 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.23 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.2 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.19 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.16 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.1 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.89 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.86 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.86 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.74 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.72 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.65 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.45 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.19 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.14 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.11 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.11 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.04 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.97 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.56 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 91.53 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.19 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.98 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.98 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 90.75 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.74 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.62 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 90.62 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.46 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 90.45 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 90.42 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 90.32 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.11 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 90.08 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 89.99 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 89.9 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 89.82 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 89.73 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 89.66 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.64 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 89.58 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 89.57 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 89.41 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.37 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.37 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 89.33 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 89.23 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 89.1 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 88.66 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.61 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.56 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 88.51 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.5 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.33 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.22 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.2 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 88.2 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 88.12 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 88.1 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 88.02 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 87.85 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 87.69 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 87.55 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 87.55 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 87.38 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 87.38 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 87.27 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.21 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 87.13 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 87.13 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 87.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 86.96 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 86.89 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.67 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 86.64 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 86.53 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.33 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.23 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.2 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 86.19 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 85.9 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 85.87 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 85.81 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.68 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.39 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.2 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 85.14 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 85.14 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 84.96 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 84.81 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 84.76 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.72 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 84.66 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 84.62 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 84.57 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 84.54 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 84.49 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 84.48 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.44 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 84.44 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 84.22 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.03 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 83.98 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 83.96 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 83.69 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 83.54 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 83.44 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 83.35 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 83.32 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 83.26 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 83.22 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 83.12 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.04 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 82.81 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 82.78 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 82.74 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 82.71 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 82.71 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 82.58 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 82.5 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 82.49 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 82.48 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 82.23 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 82.21 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 82.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 82.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 81.97 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 81.95 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 81.79 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 81.72 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 81.67 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 81.58 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 81.45 |
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=393.51 Aligned_cols=262 Identities=36% Similarity=0.612 Sum_probs=228.3
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
...|+ |++.++.++.|+++++|++++|+||+|.|+++..+|++|+|||.+|++++||+.|||||+|+|++.+++|++||
T Consensus 10 ~~~w~-e~~~~~~~~~~~v~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VL 88 (294)
T 3o4f_A 10 KKQWH-ETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVL 88 (294)
T ss_dssp CEEEE-CCSSSSEEEEEEESEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred cccee-eeccCCcceEEEEeeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 45687 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
+||+|+|+++++++++.+..+|++|||||+|+++|++||+ .....++|||++++++||+.|++...++||+||+|+++|
T Consensus 89 IiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp 168 (294)
T 3o4f_A 89 IIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDP 168 (294)
T ss_dssp EESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCC
T ss_pred EECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCc
Confidence 9999999999999999888999999999999999999997 345567899999999999999998889999999999998
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEe
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVS 265 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as 265 (297)
. +++..|++.+||+. ++++|+|||++++|.++| +...+.+..+.++++++|+.+.+|.+.+|+|+ +.|+|++||
T Consensus 169 ~--~~~~~L~t~eFy~~-~~~~L~p~Gv~v~q~~sp--~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as 243 (294)
T 3o4f_A 169 I--GPGESLFTSAFYEG-CKRCLNPGGIFVAQNGVC--FLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWAT 243 (294)
T ss_dssp C--CTTCCSSCCHHHHH-HHHTEEEEEEEEEEEEES--SSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEE
T ss_pred C--CCchhhcCHHHHHH-HHHHhCCCCEEEEecCCc--ccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEE
Confidence 7 56689999999999 799999999999999887 67788899999999999999999999999994 679999999
Q ss_pred cCCCCCCcccccccccccCCCCCCcccCCC
Q 022451 266 IYNPHSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 266 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+.+...+.-....+..-....-.++|||+-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~yyn~~ 273 (294)
T 3o4f_A 244 DNDALRHLSTEIIQARFLASGLKCRYYNPA 273 (294)
T ss_dssp SCTTGGGCCHHHHHHHHHSSCCCCSSCCHH
T ss_pred CCCccccCChHHHhHHHHhhCCCceEECHH
Confidence 987553332222111111223468999874
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=321.17 Aligned_cols=256 Identities=30% Similarity=0.623 Sum_probs=221.6
Q ss_pred cceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEE
Q 022451 29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI 108 (297)
Q Consensus 29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~ 108 (297)
.+|++|..+++.+.++++.++|++++|+||+|.|+++..+|+.|++||..|++++|++.|+|+|.|++++.++++++||+
T Consensus 2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLd 81 (275)
T 1iy9_A 2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV 81 (275)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred CccEEEecCCCcEEEEeeeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEE
Confidence 47999998899999999999999999999999999999999999999999999999999999999998877888999999
Q ss_pred EccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCC
Q 022451 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188 (297)
Q Consensus 109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~ 188 (297)
||||+|.++++++++.+..+|++||+||.+++.|+++++.....+.++|++++.+|+++++....++||+|++|++++.
T Consensus 82 iG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~- 160 (275)
T 1iy9_A 82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV- 160 (275)
T ss_dssp ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred ECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCC-
Confidence 9999999999999986778999999999999999999864222345799999999999999876788999999999876
Q ss_pred CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCcc-CCceeEEEEecC
Q 022451 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVSIY 267 (297)
Q Consensus 189 ~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~-~~~~~~~~as~~ 267 (297)
.+...|++.+||+. ++++|+|||+++++..+| +.+.+.++.+.++++++|+.+.+|...+|+| ++.|.|++||+.
T Consensus 161 -~~~~~l~~~~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~ 236 (275)
T 1iy9_A 161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK 236 (275)
T ss_dssp -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred -CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--cccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCC
Confidence 45568899999999 799999999999998766 5567888999999999999999999999999 567999999987
Q ss_pred CCCCCcccccccccccCCCCCCcccCCC
Q 022451 268 NPHSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 268 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
..+.. +... -+.....+|||+-
T Consensus 237 ~~~~~----~~~~--~~~~~~~~~~~~~ 258 (275)
T 1iy9_A 237 YDPLA----VEDS--RFFDIETKYYTKD 258 (275)
T ss_dssp CCTTC----CCGG--GCCCCCCSSCCHH
T ss_pred CCccc----cchh--hccccCCeEeCHH
Confidence 43321 2211 1122467999874
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=334.02 Aligned_cols=240 Identities=21% Similarity=0.355 Sum_probs=202.6
Q ss_pred ccCCccccceEEee--eccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhc
Q 022451 22 ALTGYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH 99 (297)
Q Consensus 22 ~~~~~~~~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~ 99 (297)
.++.+.+++|++.. .+++....|+++++|++++|+||+|.|++++.+|++|+|||.+|++++| +.|+|+|+|++++.
T Consensus 125 ~~~~~~rg~~~~~~~p~sdg~~~~y~v~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~~ 203 (381)
T 3c6k_A 125 RLPPIVRGGAIDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKED 203 (381)
T ss_dssp CCCCEEESCSSCCBCCCTTCCCBBCCEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTCCC
T ss_pred ccCccccCCccCceeECCCCcEEEEEeEEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHhhc
Confidence 45666677777665 3478899999999999999999999999999999999999999999999 67999999988765
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCC---CCCeEEEEcchHHHHhc---c
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFS---DPRLELVINDARAELES---R 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~---~~rv~~~~~Da~~~l~~---~ 172 (297)
+ +|++||+||+|+|++++++++++ ..+|++|||||+|+++|++||+. .+..++ ++|++++++||+.|++. .
T Consensus 204 ~-~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 Y-TGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp C-TTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred C-CCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 4 58999999999999999999986 48999999999999999999974 333333 46799999999999974 4
Q ss_pred CCCceEEEEcCCCCCC-C---CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 173 KESYDVIIGDLADPIE-G---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~-~---~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
.++||+||+|++++.. . ++...|++++||+. ++++|+|||++++|.++| +. .+.++.+.++++++|+.+..+
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~-~~~~L~p~GVlv~Q~~s~--~~-~~~~~~i~~tl~~vF~~v~~~ 357 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDL-SMKVLKQDGKYFTQGNCV--NL-TEALSLYEEQLGRLYCPVEFS 357 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHH-HHHTEEEEEEEEEEEEET--TC-HHHHHHHHHHHTTSSSCEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHH-HHHhcCCCCEEEEecCCC--cc-hhHHHHHHHHHHHhCCcceEe
Confidence 5789999999986432 2 23457899999999 799999999999998776 33 467789999999999987643
Q ss_pred --EEecCccCCceeEEEEecCC
Q 022451 249 --SAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 249 --~~~vp~~~~~~~~~~as~~~ 268 (297)
.+.+|+|++.|+|++|||+.
T Consensus 358 ~~~~~VPSy~~~W~F~~aSK~~ 379 (381)
T 3c6k_A 358 KEIVCVPSYLELWVFYTVWKKA 379 (381)
T ss_dssp EEEECCGGGSSCEEEEEEEECC
T ss_pred eEEEEecCCCCceeeeEEECCC
Confidence 47899998889999999976
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=312.67 Aligned_cols=258 Identities=30% Similarity=0.533 Sum_probs=220.8
Q ss_pred cceEEee--eccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeE
Q 022451 29 SCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (297)
Q Consensus 29 ~~w~~~~--~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~V 106 (297)
+.|++|. ..++.+.++++.++|++++|+||+|.|+++..+|++|++||.+|+++++++.|++++.+++++.++++++|
T Consensus 3 ~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~V 82 (283)
T 2i7c_A 3 KKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNV 82 (283)
T ss_dssp CCEEEECCTTSTTCCEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEE
T ss_pred ceeEEEcccCCCCceEEEecccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeE
Confidence 5799998 55889999999999999999999999999998899999999999999999999999999998888889999
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
|+||||+|.++++++++.+..+|++||+|+.+++.|+++++..+..++++|++++.+|+++++....++||+|++|++++
T Consensus 83 LdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~ 162 (283)
T 2i7c_A 83 LVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDP 162 (283)
T ss_dssp EEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCT
T ss_pred EEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCC
Confidence 99999999999999998777899999999999999999987432223478999999999999876678899999999887
Q ss_pred CCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC-ceeEEEEe
Q 022451 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMVS 265 (297)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~-~~~~~~as 265 (297)
. .+...+++.+|++. ++++|+|||+++++..++ +...+....+.++++++|+.+.++...+|+|++ .|+|++||
T Consensus 163 ~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s 237 (283)
T 2i7c_A 163 I--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCS 237 (283)
T ss_dssp T--TGGGGGSSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred C--CcchhhhHHHHHHH-HHHhcCCCcEEEEECCCc--ccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEe
Confidence 6 55568889999999 899999999999998766 567778899999999999999999999999964 46999999
Q ss_pred cCCCC-CCcccccccccccCCCCCCcccCCC
Q 022451 266 IYNPH-SHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 266 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+.+.. .++++.+.+... ...+|||+-
T Consensus 238 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 264 (283)
T 2i7c_A 238 KTDTGLTKPNKKLESKEF----ADLKYYNYE 264 (283)
T ss_dssp SSTTCSSSCSSCCCSGGG----TTCSSCCHH
T ss_pred CCCccccCchhhhhhhhh----hcCceECHH
Confidence 87322 244443332211 123899874
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=306.16 Aligned_cols=256 Identities=31% Similarity=0.585 Sum_probs=214.4
Q ss_pred cceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEE
Q 022451 29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI 108 (297)
Q Consensus 29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~ 108 (297)
++|++|..+++.+.++++.++|++++|+||+|.|+++..+|+.|++||..|+++++++.|+|+|.+++++.++.+++||+
T Consensus 2 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLd 81 (281)
T 1mjf_A 2 ERAFIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLV 81 (281)
T ss_dssp --CEEEEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEE
T ss_pred CccEEEecCCCceEEEeeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEE
Confidence 57999999899999999999999999999999999999889999999999999999999999999988877888999999
Q ss_pred EccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC-------CCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-------SDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-------~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
||||+|.++++++++ +..+|++||+||.+++.|++++ .....+ .+++++++.+|+++++.. .++||+|++
T Consensus 82 iG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~ 158 (281)
T 1mjf_A 82 IGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIA 158 (281)
T ss_dssp EECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEE
T ss_pred EcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEE
Confidence 999999999999998 7789999999999999999998 221122 468999999999999876 678999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGW 261 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~ 261 (297)
|+++|. .+...+++.+|++. ++++|+|||+++++.++| +...+..+.+.++++++|+.+..+...+|++++.|+|
T Consensus 159 d~~~~~--~~~~~l~~~~~l~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~ 233 (281)
T 1mjf_A 159 DSTDPV--GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAF 233 (281)
T ss_dssp ECCCCC-------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEE
T ss_pred CCCCCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEE
Confidence 999876 44467888999999 899999999999997665 5567788999999999999999999999999777999
Q ss_pred EEEecCCCCCCcccccccccccCCCCCCcccCCCCC
Q 022451 262 IMVSIYNPHSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 262 ~~as~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
++||+.+ .++. .+.... .+ +...+|||+--|
T Consensus 234 ~~as~~~--~~~~-~~~~~~-~~-~~~~~~~~~~~~ 264 (281)
T 1mjf_A 234 LVGVKGD--IDFT-KIDRER-AK-KLQLEYYDPLMH 264 (281)
T ss_dssp EEEEESS--CCTT-CCCHHH-HH-TSCCSSCCGGGG
T ss_pred EEeeCCC--CCcc-ccchhh-hh-ccCCcEECHHHH
Confidence 9999874 2222 122111 01 146789987544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=311.36 Aligned_cols=267 Identities=28% Similarity=0.562 Sum_probs=213.8
Q ss_pred ccCCccccceEEeeec--cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhc
Q 022451 22 ALTGYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH 99 (297)
Q Consensus 22 ~~~~~~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~ 99 (297)
..+....+.|++|..+ ++.+.++++.++|++++|+||+|.|+++..+|++|++||.+|+++++++.|++++.+++++.
T Consensus 13 ~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~ 92 (304)
T 2o07_A 13 SGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCS 92 (304)
T ss_dssp -----CBTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTT
T ss_pred CCCcccccceEEEeccCCCCceEEEEeccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhh
Confidence 3455567889999754 78899999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
++.+++||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....++++|++++.+|+++++....++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 88899999999999999999999877789999999999999999998642112346899999999999997767889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-Cc
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DT 258 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~ 258 (297)
++|++++. .+...+++.+||+. ++++|+|||+++++..++ |......+.+.++++++|+.+..+...+|+|+ +.
T Consensus 173 i~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~ 247 (304)
T 2o07_A 173 ITDSSDPM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQ 247 (304)
T ss_dssp EEECC-------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGE
T ss_pred EECCCCCC--CcchhhhHHHHHHH-HHhccCCCeEEEEecCCc--ccchHHHHHHHHHHHHhCCCceeEEEEeccccCcc
Confidence 99998776 44456788899999 899999999999997665 56667788999999999999998888999995 45
Q ss_pred eeEEEEecCCCC--CCcccccccccccCCCCCCcccCCC
Q 022451 259 WGWIMVSIYNPH--SHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 259 ~~~~~as~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
|+|++|++.+.. .+++..+++... ....++|||+-
T Consensus 248 ~g~~~as~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~ 284 (304)
T 2o07_A 248 IGFMLCSKNPSTNFQEPVQPLTQQQV--AQMQLKYYNSD 284 (304)
T ss_dssp EEEEEEESSTTCCSSSCSSCCCHHHH--HHTTCSSCCHH
T ss_pred eEEEEEeCCcccccccchhhhhHhhh--cccCCeEECHH
Confidence 899999988532 334433432111 01467999874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=310.93 Aligned_cols=253 Identities=30% Similarity=0.589 Sum_probs=204.5
Q ss_pred eccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhH
Q 022451 36 IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS 115 (297)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~ 115 (297)
..++...++++.++|++++|+||+|.|+++..+|+.|++||.+|+++++++.|++++++++++.++.+++||+||||+|.
T Consensus 42 ~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~ 121 (314)
T 2b2c_A 42 AWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGG 121 (314)
T ss_dssp CCTTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSH
T ss_pred cCCCceEEeecccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCH
Confidence 45788888999999999999999999999999999999999999999999999999999988878889999999999999
Q ss_pred HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCc
Q 022451 116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL 195 (297)
Q Consensus 116 ~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L 195 (297)
++++++++.+..+|++||+|+.+++.|+++++.....+.++|++++.+|+++++....++||+|++|+++|. .+...+
T Consensus 122 ~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--~~~~~l 199 (314)
T 2b2c_A 122 ILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESL 199 (314)
T ss_dssp HHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------
T ss_pred HHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--Ccchhh
Confidence 999999987778999999999999999999864211234689999999999998766678999999998776 454678
Q ss_pred ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC-ceeEEEEecCCCC--CC
Q 022451 196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMVSIYNPH--SH 272 (297)
Q Consensus 196 ~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~-~~~~~~as~~~~~--~~ 272 (297)
++.+|++. ++++|+|||+++++.+++ +...+..+.+.++++++|+.+..+...+|+|++ .|+|++|++.+.. .+
T Consensus 200 ~t~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~~~~~~~~ 276 (314)
T 2b2c_A 200 FGQSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTT 276 (314)
T ss_dssp ----HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCTTS
T ss_pred hHHHHHHH-HHhhcCCCeEEEEECCCc--ccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCCCcccccC
Confidence 88999999 899999999999998766 567778899999999999999999999999964 4699999988432 34
Q ss_pred cccccccccccCCCCCCcccCCC
Q 022451 273 SILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 273 ~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+++.+...+. .....+|||+-
T Consensus 277 ~~~~~~~~~~--~~~~~~yy~~~ 297 (314)
T 2b2c_A 277 PARTLTAEQI--KALNLRFYNSE 297 (314)
T ss_dssp CSSCCCHHHH--HHTTCSSCCHH
T ss_pred chhhhhHHhh--cccCCeEECHH
Confidence 4443322211 11267899874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=306.47 Aligned_cols=238 Identities=32% Similarity=0.630 Sum_probs=205.5
Q ss_pred cccceEEeeec-cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCe
Q 022451 27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105 (297)
Q Consensus 27 ~~~~w~~~~~~-~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~ 105 (297)
..+.|++|..+ ++.+.++.+.++|++++|+||+|.|+++..+|+.|++||.+|+++++++.|+|++.+++++.++.+++
T Consensus 14 ~~~~w~~e~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~ 93 (296)
T 1inl_A 14 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK 93 (296)
T ss_dssp CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCCceEEEecCCCCceEEeecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCE
Confidence 55689999987 89999999999999999999999999999999999999999999999999999999998887888999
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
||+||||+|.++++++++.+..+|++||+|+.+++.|++++......+++++++++.+|+++++....++||+|++|+++
T Consensus 94 VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~ 173 (296)
T 1inl_A 94 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD 173 (296)
T ss_dssp EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred EEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCC
Confidence 99999999999999999867789999999999999999998531112346899999999999987666789999999988
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCcc-CCceeEEEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMV 264 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~-~~~~~~~~a 264 (297)
++. ++...+++.+|++. ++++|+|||+++++.++| +...+.++.+.++++++|+.+.+|...+|+| ++.|+|++|
T Consensus 174 ~~~-~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~a 249 (296)
T 1inl_A 174 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249 (296)
T ss_dssp ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred ccc-CchhhhhHHHHHHH-HHHhcCCCcEEEEEccCc--ccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEe
Confidence 732 44567889999999 899999999999998766 5567788999999999999999999999999 467999999
Q ss_pred ecCC
Q 022451 265 SIYN 268 (297)
Q Consensus 265 s~~~ 268 (297)
|+..
T Consensus 250 s~~~ 253 (296)
T 1inl_A 250 SKGI 253 (296)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 9874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=309.65 Aligned_cols=238 Identities=45% Similarity=0.768 Sum_probs=209.9
Q ss_pred ccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEE
Q 022451 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (297)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL 107 (297)
.+.|++|..+++.+.++++.++|++++|+||+|.|+++..+|++|++||..|+++.+++.|+++|.|++++.++.+++||
T Consensus 3 ~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~VL 82 (314)
T 1uir_A 3 YGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVL 82 (314)
T ss_dssp SSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred CCceEEEEcCCCcEEEEecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeEE
Confidence 46899999889999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCC
Q 022451 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (297)
Q Consensus 108 ~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~ 186 (297)
+||||+|.++++++++.+..+|++||+|+.+++.|+++++. +...+++++++++.+|+++++....++||+|++|++++
T Consensus 83 diG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~ 162 (314)
T 1uir_A 83 IVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDP 162 (314)
T ss_dssp EEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCC
T ss_pred EEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCc
Confidence 99999999999999987778999999999999999999863 22113468999999999999876678899999999876
Q ss_pred C-CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc-CCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEE
Q 022451 187 I-EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF-SHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMV 264 (297)
Q Consensus 187 ~-~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~-~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~a 264 (297)
. ..++...+++.+|++. ++++|+|||+++++..+| + .+.+.++.+.++++++|+.+..+...+|++++.|.|++|
T Consensus 163 ~~~~~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~a 239 (314)
T 1uir_A 163 VGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMI--LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLA 239 (314)
T ss_dssp BSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEE--CC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEE
T ss_pred ccccCcchhccHHHHHHH-HHHhcCCCcEEEEEccCc--cccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEEE
Confidence 5 2234467889999999 899999999999997655 3 345778999999999999999999999999777999999
Q ss_pred ecCC
Q 022451 265 SIYN 268 (297)
Q Consensus 265 s~~~ 268 (297)
|+..
T Consensus 240 s~~~ 243 (314)
T 1uir_A 240 SDAF 243 (314)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 9874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=302.69 Aligned_cols=238 Identities=32% Similarity=0.588 Sum_probs=210.8
Q ss_pred cccceEEeeec--cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCC
Q 022451 27 RKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104 (297)
Q Consensus 27 ~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~ 104 (297)
....|++|..+ ++.+.++.+.++|++++|+||+|.|+++..+|+.|++||.+|+++++++.|+|++++++++.+++++
T Consensus 39 ~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~ 118 (321)
T 2pt6_A 39 FSKKWFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK 118 (321)
T ss_dssp --CCEEEECCTTSTTCCEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCC
T ss_pred ccceEEEEeccCCCCceEEEecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCC
Confidence 35789999887 8899999999999999999999999999988999999999999999999999999998888788899
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+||+||||+|.++++++++.+..+|++||+|+.+++.|++++......+++++++++.+|+++++...+++||+|++|++
T Consensus 119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~ 198 (321)
T 2pt6_A 119 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSS 198 (321)
T ss_dssp EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECC
T ss_pred EEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCc
Confidence 99999999999999999987778999999999999999999864211234689999999999998766678999999998
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEE
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIM 263 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~ 263 (297)
+|. .+...+++.+|++. ++++|+|||+++++..++ +.+.+.++.+.++++++|+.+.+|...+|+|+ +.|+|++
T Consensus 199 ~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 199 DPI--GPAETLFNQNFYEK-IYNALKPNGYCVAQCESL--WIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp CSS--SGGGGGSSHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred CCC--CcchhhhHHHHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 776 45567888999999 899999999999997665 55677889999999999999999999999995 4699999
Q ss_pred EecCCC
Q 022451 264 VSIYNP 269 (297)
Q Consensus 264 as~~~~ 269 (297)
||+.+.
T Consensus 274 as~~~~ 279 (321)
T 2pt6_A 274 CSKTDT 279 (321)
T ss_dssp EESSTT
T ss_pred eeCCCC
Confidence 998753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=296.53 Aligned_cols=263 Identities=29% Similarity=0.533 Sum_probs=214.3
Q ss_pred CccccceEEeeec--cccccccccccEEEEeeCCCCcEEEEEeC---CceeEEEEcCccccccCChhhHHHHHHHHHHhc
Q 022451 25 GYRKSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTK---PFGKALVIDGKLQSAEVDEFIYHESLVHPALLH 99 (297)
Q Consensus 25 ~~~~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~V~~~~---~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~ 99 (297)
....++|++|..+ ++...++++.+++++.+|+||+|.|+++. .+|+.|++||.+|+++.+++.|++++.++++..
T Consensus 13 ~~~~~~w~~e~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~ 92 (304)
T 3bwc_A 13 ELISGGWFREENDQWPGQAMSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCS 92 (304)
T ss_dssp CCCTTSEEEECCSSSCSEEEEEEEEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHHTT
T ss_pred ccccCceEEEeccCCCCceEEEecccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhhhc
Confidence 3455789999887 88899999999999999999999999998 789999999999999999999999999988887
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
++++++||+||||+|.++++++++.+..+|++||+|+.+++.|+++++.....+.++|++++.+|+.+++.. .+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 888999999999999999999998777899999999999999999985311113568999999999999865 4678999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCcc-C
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSF-A 256 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~-~ 256 (297)
|++|.+++. .|...|++.+|++. ++++|+|||+++++..+| +......+.+.++++++ |+.+..+...+|+| +
T Consensus 173 Ii~d~~~~~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~ 247 (304)
T 3bwc_A 173 VIIDTTDPA--GPASKLFGEAFYKD-VLRILKPDGICCNQGESI--WLDLELIEKMSRFIRETGFASVQYALMHVPTYPC 247 (304)
T ss_dssp EEEECC-----------CCHHHHHH-HHHHEEEEEEEEEEECCT--TTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTT
T ss_pred EEECCCCcc--ccchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhCCCCcEEEEEeecccccC
Confidence 999998876 45568889999999 899999999999997665 55667788999999999 99999998899999 4
Q ss_pred CceeEEEEecCCCC--CCcccccccccccCCCCCCcccCCC
Q 022451 257 DTWGWIMVSIYNPH--SHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 257 ~~~~~~~as~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+.|+|++||+.+.. .+++..+.. +.+.. .++|||+-
T Consensus 248 g~w~f~~as~~~~~~~~~~~~~~~~-~~~~~--~~~~y~~~ 285 (304)
T 3bwc_A 248 GSIGTLVCSKKAGVDVTKPLRPVED-MPFAK--DLKYYDSE 285 (304)
T ss_dssp SCCEEEEEESSSSCCTTSCSSCGGG-SGGGG--GCSSCCHH
T ss_pred cceEEEEEeCCccccccChhhhhhh-hhhcc--CCeEECHH
Confidence 67999999998532 233221211 11111 57899863
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=297.23 Aligned_cols=263 Identities=32% Similarity=0.597 Sum_probs=218.2
Q ss_pred cccceEEeee--ccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCC
Q 022451 27 RKSCWYEEEI--EENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPK 104 (297)
Q Consensus 27 ~~~~w~~~~~--~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~ 104 (297)
..++|++|.. .++.+.+|++.++|++++++||+|.|+++..+|+.|++||.+|+++++++.|++++++++++.++.++
T Consensus 43 ~~~~w~~e~~~~~~~~~~~~~v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~ 122 (334)
T 1xj5_A 43 VIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPK 122 (334)
T ss_dssp CCSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCC
T ss_pred cccceEEEeccCCCCceEEEEeeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCC
Confidence 3578999874 47889999999999999999999999999999999999999999999999999999999888788899
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~ 183 (297)
+||+||||+|.++++++++.+..+|++||+|+.+++.|++++......+.+++++++.+|+.+++... .++||+|++|+
T Consensus 123 ~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~ 202 (334)
T 1xj5_A 123 KVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDS 202 (334)
T ss_dssp EEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECC
T ss_pred EEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECC
Confidence 99999999999999999987778999999999999999999864211234689999999999998653 46899999999
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc-eeEEEEecCccC-CceeE
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY-VVPYSAHIPSFA-DTWGW 261 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~-v~~~~~~vp~~~-~~~~~ 261 (297)
++|. .+...+++.+|++. ++++|+|||+++++..++ |........+.++++++|+. +..+...+|+|. +.|+|
T Consensus 203 ~~p~--~~~~~l~~~~~l~~-~~~~LkpgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf 277 (334)
T 1xj5_A 203 SDPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGF 277 (334)
T ss_dssp CCTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEE
T ss_pred CCcc--CcchhhhHHHHHHH-HHHhcCCCcEEEEecCCc--cccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEE
Confidence 8776 34456778999999 899999999999997665 66667778888999999995 444457899995 56999
Q ss_pred EEEecCCC---CCCcccccccccccCCCCCCcccCCC
Q 022451 262 IMVSIYNP---HSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 262 ~~as~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
++||+..+ ..+++..+.+... +....++|||+-
T Consensus 278 ~~as~~~~~~~~~~~~~~~~~~~~-~~~~~~~yy~~~ 313 (334)
T 1xj5_A 278 MLCSTEGPDVDFKHPLNPIDESSS-KSNGPLKFYNAE 313 (334)
T ss_dssp EEEECSSSCCCSSSCSSCCCSGGG-TTTCCCSSCCHH
T ss_pred EEcccCCccccccCchhhhhhhhh-cccCCceEECHH
Confidence 99998743 2345444432222 234577999874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=295.04 Aligned_cols=240 Identities=16% Similarity=0.228 Sum_probs=203.6
Q ss_pred ceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEE
Q 022451 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (297)
Q Consensus 30 ~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~i 109 (297)
+|++|..+++.+.++++.++|++++|+||+|.|++++.+|++|++||. |+++.+++.|++++.+++++.++.+++||+|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~i 79 (262)
T 2cmg_A 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_dssp CEEEEEEETTEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEE
T ss_pred CcEEEEcCCCceEEEEEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEE
Confidence 599999889999999999999999999999999999999999999999 9999999999999999998888889999999
Q ss_pred ccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCC
Q 022451 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (297)
Q Consensus 110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~ 189 (297)
|||+|.++++++++ + .+|++||+|+.+++.|+++++.....+.++|++++.+|+++++ ++||+|++|+++|.
T Consensus 80 G~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d~~dp~-- 151 (262)
T 2cmg_A 80 DGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCLQEPDI-- 151 (262)
T ss_dssp SSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEESSCCCH--
T ss_pred eCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEECCCChH--
Confidence 99999999999998 7 8999999999999999999863211234689999999999886 67999999976432
Q ss_pred CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCCC
Q 022451 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
.||+. ++++|+|||+++++.++| +.....++.+.++++++|+.+.++...+|+ .+.|.|++||+...
T Consensus 152 ---------~~~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~-~g~~~~~~as~~~~ 218 (262)
T 2cmg_A 152 ---------HRIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGGVFSVAMPFVAPLRI-LSNKGYIYASFKTH 218 (262)
T ss_dssp ---------HHHHH-HHTTEEEEEEEEEEEECT--TTCHHHHHHHHHHHHTTCSEEEEECCTTCT-TCCEEEEEEESSCC
T ss_pred ---------HHHHH-HHHhcCCCcEEEEEcCCc--ccCHHHHHHHHHHHHHhCCceEEEEEccCC-CcccEEEEeeCCCC
Confidence 38999 799999999999987666 445567889999999999999999888999 77799999998853
Q ss_pred CCCcccccccccccCCCCCCcccCCC
Q 022451 270 HSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 270 ~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+ ++.+++.+ .+.....+|||+-
T Consensus 219 p---~~~~~~~~-~~~~~~~~~y~~~ 240 (262)
T 2cmg_A 219 P---LKDLMTPK-IEALTSVRYYNED 240 (262)
T ss_dssp T---TTTCCHHH-HTTCCSCSSCCHH
T ss_pred c---hhhcCHhH-hhccCCCcEECHH
Confidence 3 22222211 2222467899874
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=253.11 Aligned_cols=207 Identities=23% Similarity=0.243 Sum_probs=173.5
Q ss_pred CCCCcEEEEEeCC--ceeEEEEcCcccccc------CChhhHHHHHHHHHHh---cCCCCC--eEEEEccchhHHHHHHH
Q 022451 55 TRYQDIALLDTKP--FGKALVIDGKLQSAE------VDEFIYHESLVHPALL---HHPNPK--TIFIMGGGEGSTAREIL 121 (297)
Q Consensus 55 s~~~~i~V~~~~~--~g~~L~ldg~~q~~~------~d~~~y~e~l~~~~l~---~~~~~~--~VL~iG~G~G~~~~~l~ 121 (297)
..|...+|..... +|++|++||..|+++ .+++.|+|+|+|++++ .++.++ +||+||||+|.++++++
T Consensus 29 ~~~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la 108 (317)
T 3gjy_A 29 GEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFA 108 (317)
T ss_dssp CSSSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHH
T ss_pred ceeeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHH
Confidence 4455688887653 799999999999974 5789999999998886 467766 99999999999999999
Q ss_pred hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHH
Q 022451 122 RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSF 200 (297)
Q Consensus 122 ~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef 200 (297)
++.+..+|++||+|+.|++.||++|... .++|++++++|+++++... .++||+|++|++++. .+...|++.+|
T Consensus 109 ~~~p~~~v~~VEidp~vi~~Ar~~~~~~----~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~--~~~~~L~t~ef 182 (317)
T 3gjy_A 109 DVYPQSRNTVVELDAELARLSREWFDIP----RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA--ITPQNFTTVEF 182 (317)
T ss_dssp HHSTTCEEEEEESCHHHHHHHHHHSCCC----CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS--CCCGGGSBHHH
T ss_pred HHCCCcEEEEEECCHHHHHHHHHhcccc----CCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc--ccchhhhHHHH
Confidence 9656679999999999999999999764 3689999999999999764 578999999998876 33468999999
Q ss_pred HHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC--ceeEEEEecCCCCC
Q 022451 201 YEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--TWGWIMVSIYNPHS 271 (297)
Q Consensus 201 ~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~--~~~~~~as~~~~~~ 271 (297)
|+. ++++|+|||+|++|..++ .....++.++++++++|+++..|....|.++. +|.+++||+.+.+.
T Consensus 183 l~~-~~r~LkpgGvlv~~~~~~---~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~ 251 (317)
T 3gjy_A 183 FEH-CHRGLAPGGLYVANCGDH---SDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFS 251 (317)
T ss_dssp HHH-HHHHEEEEEEEEEEEEEC---TTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSCCCC
T ss_pred HHH-HHHhcCCCcEEEEEecCC---cchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCCCCc
Confidence 999 799999999999998532 23467789999999999999988766666653 35569999988664
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=126.92 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=87.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC--CCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~--~~yD 177 (297)
.++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ -.++++++.+|+.+++.... ++||
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG---VDQRVTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence 4678999999999999999998755 6899999999999999999986543 13689999999999886543 4899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|...+ ....+++. +.+.|+|||++++..
T Consensus 139 ~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 139 LIFIDADKP---------NNPHYLRW-ALRYSRPGTLIIGDN 170 (248)
T ss_dssp EEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEEC
T ss_pred EEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEeC
Confidence 999986421 12468898 799999999998864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=127.60 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=86.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc------C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~------~ 173 (297)
..+++||+||||+|..+..+++..+ ..+|+++|+|+.+++.|++++...+ -.++++++.+|+.+++... .
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHHHHHHhccCCC
Confidence 4678999999999999999998644 6899999999999999999987542 1368999999999887542 5
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++||+|++|.... ....+++. +.+.|+|||++++.
T Consensus 155 ~~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d 189 (247)
T 1sui_A 155 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_dssp TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred CCEEEEEEcCchH---------HHHHHHHH-HHHhCCCCeEEEEe
Confidence 7899999996421 13478898 79999999999875
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=124.82 Aligned_cols=105 Identities=22% Similarity=0.397 Sum_probs=87.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~I 179 (297)
.++++||+||||+|..+..+++..+..+|++||+++.+++.|++++...+ -.++++++.+|+.+++. ...++||+|
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH---FENQVRIIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT---CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhhccCCccEE
Confidence 46789999999999999999986667899999999999999999986542 13589999999998876 546789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++|...+ . ..++++. +.+.|+|||++++.
T Consensus 147 ~~~~~~~-------~--~~~~l~~-~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 147 FIDAAKA-------Q--SKKFFEI-YTPLLKHQGLVITD 175 (232)
T ss_dssp EEETTSS-------S--HHHHHHH-HGGGEEEEEEEEEE
T ss_pred EEcCcHH-------H--HHHHHHH-HHHhcCCCeEEEEe
Confidence 9996421 1 3478898 79999999999884
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=123.08 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ ..++++++.+|+.+++....+ ||+|
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG---LIDRVELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS---GGGGEEEEESCHHHHHTTCCS-EEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCceEEEEEecHHHHhccCCC-CCEE
Confidence 3678999999999999999998754 6899999999999999999886432 135899999999988765556 9999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC-CCCcC---CchHHHHHHHHHHhhCCceeEEEEecCcc
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AGIFS---HTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~-p~~~~---~~~~~~~i~~~l~~~F~~v~~~~~~vp~~ 255 (297)
++|.... ....+++. +.+.|+|||++++.... .+... ..+..+.+...+...+.+.......+|..
T Consensus 131 ~~~~~~~---------~~~~~l~~-~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 200 (210)
T 3c3p_A 131 FMDCDVF---------NGADVLER-MNRCLAKNALLIAVNALRRGSVAESHEDPETAALREFNHHLSRRRDFFTTIVPVG 200 (210)
T ss_dssp EEETTTS---------CHHHHHHH-HGGGEEEEEEEEEESSSSCC------------CCCHHHHHHTTCTTEEEEEECST
T ss_pred EEcCChh---------hhHHHHHH-HHHhcCCCeEEEEECccccCcccCcccchHHHHHHHHHHHHhhCCCeEEEEEecC
Confidence 9995321 13578998 79999999999885321 00000 11111222333444444433334455642
Q ss_pred CCceeEEEEecC
Q 022451 256 ADTWGWIMVSIY 267 (297)
Q Consensus 256 ~~~~~~~~as~~ 267 (297)
+++.++.|+
T Consensus 201 ---~G~~~~~~~ 209 (210)
T 3c3p_A 201 ---NGVLLGYRL 209 (210)
T ss_dssp ---TCEEEEEEC
T ss_pred ---CceEEEEeC
Confidence 467777765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=118.55 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=86.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~I 179 (297)
.++++|||+|||+|.++..+++. +..+|++||+|+.+++.|++++...+ -++++++.+|+.+++... .++||+|
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALG----LSGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHT----CSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----CCceEEEEccHHHHHhhccCCCccEE
Confidence 46789999999999999988875 46789999999999999999987553 268999999999987543 5789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcc--cCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKP--RLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~--~L~pgGvl~~~~~ 220 (297)
++|++-.. . .-...++++. +.+ .|+|||++++...
T Consensus 118 ~~~~p~~~--~---~~~~~~~l~~-~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 118 LADPPYNV--D---SADVDAILAA-LGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EECCCTTS--C---HHHHHHHHHH-HHHSSSCCTTCEEEEEEE
T ss_pred EECCCCCc--c---hhhHHHHHHH-HHhcCccCCCeEEEEEec
Confidence 99976322 1 0113467777 677 9999999999863
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-14 Score=122.30 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=85.8
Q ss_pred CeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEE
Q 022451 104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~ 181 (297)
.+||+||||+|..+..+++. ++..+|++||+|+.+++.|++++...+ +.+++++++.+|+.+++... +++||+|++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 39999999999999999885 446899999999999999999987543 12268999999999998664 578999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|...+. ..++++. +.+.|+|||++++..
T Consensus 136 d~~~~~---------~~~~l~~-~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVSPMD---------LKALVDA-AWPLLRRGGALVLAD 163 (221)
T ss_dssp CCCTTT---------HHHHHHH-HHHHEEEEEEEEETT
T ss_pred cCcHHH---------HHHHHHH-HHHHcCCCcEEEEeC
Confidence 964211 2368998 799999999999863
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=125.54 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=105.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc------C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~------~ 173 (297)
.++++||+||||+|..+..+++..+ ..+|+++|+|+.+++.|++++...+ -.++++++.+|+.+++... .
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG---VEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 5678999999999999999998644 6899999999999999999987542 1368999999999887542 4
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC-CC-CcC----Cch----HHHHHHHHHHhhCC
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP-AG-IFS----HTE----VFSCIYNTLRQVFK 243 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~-p~-~~~----~~~----~~~~i~~~l~~~F~ 243 (297)
++||+|++|...+ ...++++. +.+.|+|||++++.... .+ ... ... ..+.+.+..+..+.
T Consensus 146 ~~fD~I~~d~~~~---------~~~~~l~~-~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~ 215 (237)
T 3c3y_A 146 GSYDFGFVDADKP---------NYIKYHER-LMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAA 215 (237)
T ss_dssp TCEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEECCchH---------HHHHHHHH-HHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhc
Confidence 7899999995311 13578999 79999999999886321 00 000 011 12333344444444
Q ss_pred ceeEEEEecCccCCceeEEEEecC
Q 022451 244 YVVPYSAHIPSFADTWGWIMVSIY 267 (297)
Q Consensus 244 ~v~~~~~~vp~~~~~~~~~~as~~ 267 (297)
+.......+|.. .+++++.++
T Consensus 216 ~~~~~~~~lp~~---dG~~~~~~~ 236 (237)
T 3c3y_A 216 DPRIEIVHLPLG---DGITFCRRL 236 (237)
T ss_dssp CTTEEEEEECST---TCEEEEEEC
T ss_pred CCCeEEEEEEeC---CceEEEEEc
Confidence 444445566763 357777654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=127.16 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 85 EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 85 ~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
+..|.+.+... ..+++.+||+||||+|..+..++++. ..++++||++|.+++.|++++... ..+++++.+|
T Consensus 46 e~~~m~~~a~~---~~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~-----~~~~~~~~~~ 116 (236)
T 3orh_A 46 ETPYMHALAAA---ASSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGL 116 (236)
T ss_dssp GHHHHHHHHHH---HTTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESC
T ss_pred HHHHHHHHHHh---hccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhC-----CCceEEEeeh
Confidence 44455555432 23678899999999999999999875 468999999999999999987643 3678999999
Q ss_pred hHHHHhc-cCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEe
Q 022451 165 ARAELES-RKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 165 a~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...+.. .++.||.|+.|...... .. .++ ....++++ ++++|||||+|++.
T Consensus 117 a~~~~~~~~~~~FD~i~~D~~~~~~-~~-~~~~~~~~~~~e-~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 117 WEDVAPTLPDGHFDGILYDTYPLSE-ET-WHTHQFNFIKNH-AFRLLKPGGVLTYC 169 (236)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBG-GG-TTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred HHhhcccccccCCceEEEeeeeccc-ch-hhhcchhhhhhh-hhheeCCCCEEEEE
Confidence 9887654 45789999999764321 11 122 23467888 79999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=119.53 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=86.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc----CCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~----~~~ 175 (297)
.++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ..++++++.+|+.+.+... .++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN---LNDRVEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 4678999999999999999998755 6799999999999999999986543 2357999999998876531 267
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
||+|++|...+ ....+++. +.+.|+|||++++..
T Consensus 134 fD~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 134 FDFIFIDADKQ---------NNPAYFEW-ALKLSRPGTVIIGDN 167 (223)
T ss_dssp CSEEEECSCGG---------GHHHHHHH-HHHTCCTTCEEEEES
T ss_pred cCEEEEcCCcH---------HHHHHHHH-HHHhcCCCcEEEEeC
Confidence 99999996521 12478898 799999999998863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=118.87 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=85.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-----C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-----~ 174 (297)
.++++||+||||+|..+..+++.. +..+|++||+++.+++.|++++...+ -.++++++.+|+.+++.... +
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC---CCCceEEEECCHHHHHHHHHHhcCCC
Confidence 467899999999999999999853 46899999999999999999987543 13579999999998876543 6
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+||+|++|..... ..-..++++. + +.|+|||++++..
T Consensus 134 ~fD~V~~d~~~~~------~~~~~~~~~~-~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 134 TLDMVFLDHWKDR------YLPDTLLLEK-C-GLLRKGTVLLADN 170 (221)
T ss_dssp CCSEEEECSCGGG------HHHHHHHHHH-T-TCCCTTCEEEESC
T ss_pred ceEEEEEcCCccc------chHHHHHHHh-c-cccCCCeEEEEeC
Confidence 8999999964211 1112356776 5 9999999998864
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=119.21 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=105.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
+.+.+|||||||+|..+..++...+..+|++||+++.+++.|++++...+ -++++++.+|+.++... ..++||+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ----LENTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEeccHHHhcccccccCCccE
Confidence 35789999999999999888865567899999999999999999876542 24699999999886421 2468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFAD 257 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~ 257 (297)
|+++... . -..+++. +.+.|+|||.+++..+.. ..+....+.+.+++. |..........|....
T Consensus 145 V~~~~~~----~------~~~~l~~-~~~~LkpgG~l~~~~g~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 209 (240)
T 1xdz_A 145 VTARAVA----R------LSVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTLGGELENIHSFKLPIEES 209 (240)
T ss_dssp EEEECCS----C------HHHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCC
T ss_pred EEEeccC----C------HHHHHHH-HHHhcCCCCEEEEEeCCC----chHHHHHHHHHHHHcCCeEeEEEEEecCCCCC
Confidence 9998631 1 2478888 799999999998875421 234455566666654 3322222233554444
Q ss_pred ceeEEEEecCC
Q 022451 258 TWGWIMVSIYN 268 (297)
Q Consensus 258 ~~~~~~as~~~ 268 (297)
.+.++++.+..
T Consensus 210 ~~~l~~~~k~~ 220 (240)
T 1xdz_A 210 DRNIMVIRKIK 220 (240)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEEEecC
Confidence 46666666554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=122.92 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=99.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccCCCCCCCeEEEEcchHHHHhc-----
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKEAFSDPRLELVINDARAELES----- 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~---~~~~~~~~rv~~~~~Da~~~l~~----- 171 (297)
..++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++.. ++ -.++++++.+|+.+++..
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA---FSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT---TGGGEEEEECCTTCCHHHHHHTT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC---CcceEEEEeCCHHHHhhhhhhhc
Confidence 3456799999999999999999877678999999999999999998765 32 124799999999877531
Q ss_pred -cCCCceEEEEcCCCCCCCC---C---------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 172 -RKESYDVIIGDLADPIEGG---P---------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 172 -~~~~yD~Ii~D~~~~~~~~---p---------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
..++||+|+++++-..... + .....-.++++. +.+.|+|||.+++... ...+..+...+
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-------~~~~~~~~~~l 182 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRT-ASAIMVSGGQLSLISR-------PQSVAEIIAAC 182 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHH-HHHHEEEEEEEEEEEC-------GGGHHHHHHHH
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHH-HHHHcCCCCEEEEEEc-------HHHHHHHHHHH
Confidence 2568999999975211000 0 001123578888 7999999999988642 22456677777
Q ss_pred HhhCCceeEE
Q 022451 239 RQVFKYVVPY 248 (297)
Q Consensus 239 ~~~F~~v~~~ 248 (297)
++.|..+...
T Consensus 183 ~~~~~~~~i~ 192 (260)
T 2ozv_A 183 GSRFGGLEIT 192 (260)
T ss_dssp TTTEEEEEEE
T ss_pred HhcCCceEEE
Confidence 7766554433
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=119.71 Aligned_cols=128 Identities=15% Similarity=0.211 Sum_probs=99.5
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~I 179 (297)
....|||||||+|.++..+++..+..+|++||+++.+++.|+++....+ -++++++.+|+.+++.. .++.||.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~----l~nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG----LSNLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT----CSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHcCCCChheE
Confidence 5678999999999999999987777899999999999999999876432 25799999999998653 46789999
Q ss_pred EEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++..++|+.... ...+...+|++. +.++|+|||++.+.+. .......+...+.+
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~-~~r~LkpGG~l~i~td------~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAEL-VKSKLQLGGVFHMATD------WEPYAEHMLEVMSS 165 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHT
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHh
Confidence 998777763211 123455689999 8999999999998763 23344555555554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-13 Score=111.11 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=99.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+||++|||+|.++..+++. ..+++++|+++.+++.|++++...+ +.+++++++.+|+.+.+. .++||+|
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~D~v 123 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEE
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECchhcccc--cCCceEE
Confidence 356789999999999999999987 5799999999999999999886542 122259999999887543 4689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+++.+-.. . .-....+++. +.+.|+|||.+++.... ......+.+.+++.|..+..+
T Consensus 124 ~~~~~~~~--~---~~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 180 (194)
T 1dus_A 124 ITNPPIRA--G---KEVLHRIIEE-GKELLKDNGEIWVVIQT------KQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp EECCCSTT--C---HHHHHHHHHH-HHHHEEEEEEEEEEEES------THHHHHHHHHHHHHHSCCEEE
T ss_pred EECCCccc--c---hhHHHHHHHH-HHHHcCCCCEEEEEECC------CCChHHHHHHHHHHhcceEEE
Confidence 99865321 1 1123478888 79999999999988532 233455777888888877644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=123.80 Aligned_cols=105 Identities=21% Similarity=0.352 Sum_probs=86.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~~ 174 (297)
.++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ ..++++++.+|+.+++... .+
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK---QEHKIKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT---CTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHhhccCCC
Confidence 4678999999999999999998643 6899999999999999999987543 2368999999999887653 47
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|.... ....+++. +.+.|+|||++++.
T Consensus 136 ~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 136 QFDFIFIDADKT---------NYLNYYEL-ALKLVTPKGLIAID 169 (242)
T ss_dssp CEEEEEEESCGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred CEeEEEEcCChH---------HhHHHHHH-HHHhcCCCeEEEEE
Confidence 899999996411 12468888 79999999999985
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=117.51 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=86.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC-----C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-----E 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-----~ 174 (297)
.++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ -.++++++.+|+.+++.... +
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG---LSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeCCHHHHHHHhhhccCCC
Confidence 4678999999999999999998654 6899999999999999999986543 23679999999988875422 7
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+||+|++|.... ....+++. +.+.|+|||++++..
T Consensus 140 ~fD~v~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 140 QYDLIYIDADKA---------NTDLYYEE-SLKLLREGGLIAVDN 174 (225)
T ss_dssp CEEEEEECSCGG---------GHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred CccEEEECCCHH---------HHHHHHHH-HHHhcCCCcEEEEeC
Confidence 899999986411 12468888 799999999998863
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.1e-14 Score=118.56 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=88.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.++.+|||+|||+|.++..+++..+..+++++|+|+.+++.|++++...+ .+++++.+|+.+.+.. ..++||
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~fD 103 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-----AVVDWAAADGIEWLIERAERGRPWH 103 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-----CceEEEEcchHhhhhhhhhccCccc
Confidence 57789999999999999999998767799999999999999999876542 2789999999887653 247899
Q ss_pred EEEEcCCCCCCCC------------CccCcc--------cHHHHHHHHcccCCCCcE-EEEecCCCCCcCCchHHHHHHH
Q 022451 178 VIIGDLADPIEGG------------PCYKLY--------TKSFYEFVVKPRLNPEGI-FVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 178 ~Ii~D~~~~~~~~------------p~~~L~--------t~ef~~~~~~~~L~pgGv-l~~~~~~p~~~~~~~~~~~i~~ 236 (297)
+|+++++-..... |...+. -..+++. +.+.|+|||+ +++... ....+.+..++.
T Consensus 104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~ 178 (215)
T 4dzr_A 104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL-PPYVLARGRAGVFLEVG----HNQADEVARLFA 178 (215)
T ss_dssp EEEECCCCCC------------------------CTTHHHHHHHTC-CGGGBCSSSEEEEEECT----TSCHHHHHHHTG
T ss_pred EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH-HHHHhcCCCeEEEEEEC----CccHHHHHHHHH
Confidence 9999876311000 000000 0577888 7899999999 666542 223333333333
Q ss_pred HHHhhCCceeEEEEecCccCCceeEEEEecCC
Q 022451 237 TLRQVFKYVVPYSAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 237 ~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~ 268 (297)
.++..|..+..+ +.+.+...++++.+..
T Consensus 179 ~~~~gf~~~~~~----~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 179 PWRERGFRVRKV----KDLRGIDRVIAVTREP 206 (215)
T ss_dssp GGGGGTEECCEE----ECTTSCEEEEEEEECC
T ss_pred HhhcCCceEEEE----EecCCCEEEEEEEEcC
Confidence 233446555433 3344445677777654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=117.79 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---C--C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--E 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~--~ 174 (297)
.++++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ -.++++++.+|+.+++... + +
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG---VAEKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 3678999999999999999998654 5799999999999999999886432 1357999999998876532 2 6
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC-CC----cCCchHHHHHHHHHHhhCCceeEEE
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA-GI----FSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p-~~----~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
+||+|++|...+ ...++++. +.+.|+|||++++..... +. ....+..+.+.+..+.+..+.....
T Consensus 148 ~fD~V~~d~~~~---------~~~~~l~~-~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (232)
T 3cbg_A 148 EFDLIFIDADKR---------NYPRYYEI-GLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRI 217 (232)
T ss_dssp CEEEEEECSCGG---------GHHHHHHH-HHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEE
T ss_pred CcCEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEE
Confidence 899999986411 12478898 799999999999863210 00 0012233444444444444433334
Q ss_pred EecCccCCceeEEEEec
Q 022451 250 AHIPSFADTWGWIMVSI 266 (297)
Q Consensus 250 ~~vp~~~~~~~~~~as~ 266 (297)
..+|.. + ++.++.+
T Consensus 218 ~~lp~~-d--G~~~~~~ 231 (232)
T 3cbg_A 218 SVIPLG-D--GMTLALK 231 (232)
T ss_dssp EEECSB-T--CEEEEEE
T ss_pred EEEEcC-C--eEEEEEe
Confidence 455653 2 4666654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=117.43 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=105.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
..+.+|||||||+|..+..++...+..+|++||+++.+++.|+++....+ -.+++++.+|+.++... ..++||+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----l~~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG----LKGARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT----CSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCceEEEECcHHHhhcccccCCCceE
Confidence 45789999999999999998887677899999999999999999876542 24699999999887542 2478999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFAD 257 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~ 257 (297)
|++....+ + ..+++. +.+.|+|||.+++..+.. ..+.+..+.+.+.+. |.........+|....
T Consensus 155 I~s~a~~~--------~--~~ll~~-~~~~LkpgG~l~~~~g~~----~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~ 219 (249)
T 3g89_A 155 AVARAVAP--------L--CVLSEL-LLPFLEVGGAAVAMKGPR----VEEELAPLPPALERLGGRLGEVLALQLPLSGE 219 (249)
T ss_dssp EEEESSCC--------H--HHHHHH-HGGGEEEEEEEEEEECSC----CHHHHTTHHHHHHHHTEEEEEEEEEECTTTCC
T ss_pred EEECCcCC--------H--HHHHHH-HHHHcCCCeEEEEEeCCC----cHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCC
Confidence 99976421 1 378888 799999999998765421 233445555555554 3333333345665444
Q ss_pred ceeEEEEecC
Q 022451 258 TWGWIMVSIY 267 (297)
Q Consensus 258 ~~~~~~as~~ 267 (297)
....++..+.
T Consensus 220 ~R~l~~~~k~ 229 (249)
T 3g89_A 220 ARHLVVLEKT 229 (249)
T ss_dssp EEEEEEEEEC
T ss_pred cEEEEEEEeC
Confidence 3445555543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=115.73 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=98.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~I 179 (297)
.++.+|||||||+|.++..+++..+..++++||+++.+++.|++++...+ -++++++.+|+.++.. -..++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~D~i 115 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG----VPNIKLLWVDGSDLTDYFEDGEIDRL 115 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CSSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCCCCCCEE
Confidence 45778999999999999999987777899999999999999999876542 2689999999987432 235679999
Q ss_pred EEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+++.++|+.... ...+...++++. +.+.|+|||++++.+. .......+.+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~~~~~ 172 (214)
T 1yzh_A 116 YLNFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY 172 (214)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred EEECCCCccccchhhhccCCHHHHHH-HHHHcCCCcEEEEEeC------CHHHHHHHHHHHHHC
Confidence 999887652110 012445789999 8999999999998753 223445555666554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=109.51 Aligned_cols=124 Identities=23% Similarity=0.194 Sum_probs=94.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++...+ ...++ ++.+|+.+.+....++||+|
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~D~i 98 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG---VSDRI-AVQQGAPRAFDDVPDNPDVI 98 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT---CTTSE-EEECCTTGGGGGCCSCCSEE
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC---CCCCE-EEecchHhhhhccCCCCCEE
Confidence 356679999999999999999987677899999999999999999876442 12478 88899877766544789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCc
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~ 244 (297)
+++...+. ..+++. +.+.|+|||.+++... ..+....+...+++....
T Consensus 99 ~~~~~~~~----------~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~~~~~~~~ 146 (178)
T 3hm2_A 99 FIGGGLTA----------PGVFAA-AWKRLPVGGRLVANAV------TVESEQMLWALRKQFGGT 146 (178)
T ss_dssp EECC-TTC----------TTHHHH-HHHTCCTTCEEEEEEC------SHHHHHHHHHHHHHHCCE
T ss_pred EECCcccH----------HHHHHH-HHHhcCCCCEEEEEee------ccccHHHHHHHHHHcCCe
Confidence 98754321 467888 7999999999998753 233445556666665443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=125.64 Aligned_cols=150 Identities=11% Similarity=0.128 Sum_probs=98.5
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
+...++.+||+||||+|.++..++...+..+|++||+||++++.||+++...+ + ++++++.+|+.++ . ++.||
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g--l--~~v~~v~gDa~~l-~--d~~FD 190 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG--V--DGVNVITGDETVI-D--GLEFD 190 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT--C--CSEEEEESCGGGG-G--GCCCS
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC--C--CCeEEEECchhhC-C--CCCcC
Confidence 34577899999999988765444333346899999999999999999987543 1 6899999999885 2 57899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD 257 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~ 257 (297)
+|+++...+ . ..++++. +.++|+|||++++...... . .-.+..+.....+.|.... ...|+-..
T Consensus 191 vV~~~a~~~---d------~~~~l~e-l~r~LkPGG~Lvv~~~~~~--r-~~l~~~v~~~~~~gf~~~~---~~~p~~~v 254 (298)
T 3fpf_A 191 VLMVAALAE---P------KRRVFRN-IHRYVDTETRIIYRTYTGM--R-AILYAPVSDDDITGFRRAG---VVLPSGKV 254 (298)
T ss_dssp EEEECTTCS---C------HHHHHHH-HHHHCCTTCEEEEEECCGG--G-GGSSCCCCTGGGTTEEEEE---EECCCTTC
T ss_pred EEEECCCcc---C------HHHHHHH-HHHHcCCCcEEEEEcCcch--h-hhccccCChhhhhhhhhee---EECCCCCc
Confidence 999875421 1 2478898 8999999999998853210 0 0000000011223344322 23354333
Q ss_pred ceeEEEEecCCCC
Q 022451 258 TWGWIMVSIYNPH 270 (297)
Q Consensus 258 ~~~~~~as~~~~~ 270 (297)
.+..+++.|..++
T Consensus 255 ~N~vv~a~k~~~~ 267 (298)
T 3fpf_A 255 NNTSVLVFKCPDK 267 (298)
T ss_dssp CCEEEEEEECC--
T ss_pred CcEEEEEEccCCc
Confidence 4668888877655
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-13 Score=115.64 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=85.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---C--C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---K--E 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~--~ 174 (297)
..+++||+||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ..++++++.+|+.+.+... . +
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC---CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 4678999999999999999998644 6799999999999999999986543 1368999999998876532 1 6
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|+... ....+++. +.+.|+|||++++.
T Consensus 145 ~~D~v~~d~~~~---------~~~~~l~~-~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 145 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL 178 (229)
T ss_dssp CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred CccEEEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEE
Confidence 899999986421 12478888 79999999999885
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.9e-13 Score=114.14 Aligned_cols=130 Identities=10% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD~I 179 (297)
.+..+|||||||+|.++..+++..+..++++||+++.+++.|+++....+ -++++++.+|+.++.. -.+..||.|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~----~~nv~~~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC----CCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence 45678999999999999999987777899999999999999999876442 2579999999987432 235679999
Q ss_pred EEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
++..++|+.... ...+....+++. +.+.|+|||.+++.+. .......+...+.+.
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~-~~~~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 169 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY 169 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred EEECCCCCcCccccccccCcHHHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHC
Confidence 998777752111 123446789999 8999999999998753 233445555556554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=111.08 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=96.6
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+ -++++++.+|+.+.+.. .++||+
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~ 111 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV----ARNVTLVEAFAPEGLDD-LPDPDR 111 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT----CTTEEEEECCTTTTCTT-SCCCSE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeCChhhhhhc-CCCCCE
Confidence 3456789999999999999999988777899999999999999999876542 26899999998776543 267999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|+++...+ ...++++. +.+.|+|||.+++... .......+.+.+++.
T Consensus 112 i~~~~~~~---------~~~~~l~~-~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 112 VFIGGSGG---------MLEEIIDA-VDRRLKSEGVIVLNAV------TLDTLTKAVEFLEDH 158 (204)
T ss_dssp EEESCCTT---------CHHHHHHH-HHHHCCTTCEEEEEEC------BHHHHHHHHHHHHHT
T ss_pred EEECCCCc---------CHHHHHHH-HHHhcCCCeEEEEEec------ccccHHHHHHHHHHC
Confidence 99986532 13478888 7999999999998742 234556666777665
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-13 Score=116.35 Aligned_cols=106 Identities=20% Similarity=0.326 Sum_probs=85.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-------
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------- 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~------- 172 (297)
.++++||+||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ ..++++++.+|+.+++...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG---LENKIFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHHHHHHHhhcccc
Confidence 4678999999999999999998654 6799999999999999999986442 1357999999998876532
Q ss_pred --------C-CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 --------K-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 --------~-~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
. ++||+|+++...+ . ..++++. +.+.|+|||++++..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~~~~-------~--~~~~l~~-~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDADKE-------N--YPNYYPL-ILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECSCGG-------G--HHHHHHH-HHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeCCHH-------H--HHHHHHH-HHHHcCCCeEEEEEc
Confidence 2 6899999985311 1 2378888 799999999999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=113.90 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=96.6
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+++.+|||+||| +|.++..+++.. ..+|+++|+|+.+++.|++++...+ .+++++.+|+..+....+++||+
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN-----SNVRLVKSNGGIIKGVVEGTFDV 126 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT-----CCCEEEECSSCSSTTTCCSCEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC-----CCcEEEeCCchhhhhcccCceeE
Confidence 3567899999999 999999998864 5799999999999999999887552 27999999975433223478999
Q ss_pred EEEcCCCCCCCC-----C--------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 179 IIGDLADPIEGG-----P--------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 179 Ii~D~~~~~~~~-----p--------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
|+++++-..... + ...-...++++. +.+.|+|||.+++... ........+.+.+++..-.+
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-----~~~~~~~~~~~~l~~~g~~~ 200 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEE-AFDHLNPGGKVALYLP-----DKEKLLNVIKERGIKLGYSV 200 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHH-HGGGEEEEEEEEEEEE-----SCHHHHHHHHHHHHHTTCEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHH-HHHHhCCCeEEEEEec-----ccHhHHHHHHHHHHHcCCce
Confidence 999976211000 0 000112678998 7999999999988642 12345567777777764344
Q ss_pred e
Q 022451 246 V 246 (297)
Q Consensus 246 ~ 246 (297)
.
T Consensus 201 ~ 201 (230)
T 3evz_A 201 K 201 (230)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=114.16 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=113.6
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhc-CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~-~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
|+.+.++....+..+. .+.++...+.. ..++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++.
T Consensus 79 ~~~~~~~~~~~ipr~~----te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~ 154 (276)
T 2b3t_A 79 SLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 154 (276)
T ss_dssp TEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred CceEEeCCCCcccCch----HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4556655544444333 23333222211 145679999999999999999976677899999999999999999876
Q ss_pred hccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCC-----------CCCccCc--------ccHHHHHHHHccc
Q 022451 148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE-----------GGPCYKL--------YTKSFYEFVVKPR 208 (297)
Q Consensus 148 ~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~-----------~~p~~~L--------~t~ef~~~~~~~~ 208 (297)
..+ -++++++.+|+.+.+. .++||+|+++++-... ..|...+ ....+++. +.+.
T Consensus 155 ~~~----~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~-~~~~ 227 (276)
T 2b3t_A 155 HLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ-SRNA 227 (276)
T ss_dssp HHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH-HGGG
T ss_pred HcC----CCceEEEEcchhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHH-HHHh
Confidence 542 2479999999987653 4689999999763111 0111111 12567888 7999
Q ss_pred CCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEe
Q 022451 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVS 265 (297)
Q Consensus 209 L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as 265 (297)
|+|||++++..+. ... ..+.+.+++. |..+..+ +.+.+...++++.
T Consensus 228 LkpgG~l~~~~~~----~~~---~~~~~~l~~~Gf~~v~~~----~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 228 LVSGGFLLLEHGW----QQG---EAVRQAFILAGYHDVETC----RDYGDNERVTLGR 274 (276)
T ss_dssp EEEEEEEEEECCS----SCH---HHHHHHHHHTTCTTCCEE----ECTTSSEEEEEEE
T ss_pred cCCCCEEEEEECc----hHH---HHHHHHHHHCCCcEEEEE----ecCCCCCcEEEEE
Confidence 9999999987532 233 3344445544 6655433 2344445666654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=120.12 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
.+++.+|||||||+|..+..+++.. +..+|++||+++.|++.||+++.... ...+++++.+|+.++ ..+.||
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~---~~~~v~~~~~D~~~~---~~~~~d 141 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDI---AIENAS 141 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCTTTC---CCCSEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc---cCceEEEeecccccc---cccccc
Confidence 4678899999999999999998753 45699999999999999999876432 246899999998663 346799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++...-++ .+. --...+++. +++.|+|||+|++..
T Consensus 142 ~v~~~~~l~~--~~~--~~~~~~l~~-i~~~LkpGG~lii~e 178 (261)
T 4gek_A 142 MVVLNFTLQF--LEP--SERQALLDK-IYQGLNPGGALVLSE 178 (261)
T ss_dssp EEEEESCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred cceeeeeeee--cCc--hhHhHHHHH-HHHHcCCCcEEEEEe
Confidence 9998764322 110 112357898 799999999998753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=113.16 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+ -.++++++.+|+.+++....++||+|+
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~i~ 105 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF 105 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECcHHHhHHhhcCCCCEEE
Confidence 46789999999999999999986 56799999999999999999876442 125799999999998765567799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
++++-. .....++++. +. +.|+|||++++...
T Consensus 106 ~~~~~~-------~~~~~~~~~~-l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 106 LDPPYA-------KETIVATIEA-LAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp ECCSSH-------HHHHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred ECCCCC-------cchHHHHHHH-HHhCCCcCCCcEEEEEEC
Confidence 986421 1123466777 66 89999999998864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=117.81 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++...+ -.++++++.+|+.+.+ ..++||
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D 164 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG---FDDRVTIKLKDIYEGI--EEENVD 164 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT---CTTTEEEECSCGGGCC--CCCSEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC---CCCceEEEECchhhcc--CCCCcC
Confidence 3456789999999999999999987 667899999999999999999986543 1356999999998664 346799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh---CCceeEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV---FKYVVPY 248 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~---F~~v~~~ 248 (297)
+|++|+++++ ++++. +.+.|+|||.+++... .......+.+.+++. |..+..+
T Consensus 165 ~v~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 165 HVILDLPQPE-----------RVVEH-AAKALKPGGFFVAYTP------CSNQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp EEEECSSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred EEEECCCCHH-----------HHHHH-HHHHcCCCCEEEEEEC------CHHHHHHHHHHHHHcCCCccccEEE
Confidence 9999876432 56777 7999999999998742 234556667777765 7766544
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=114.95 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=94.8
Q ss_pred cCC-CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCc
Q 022451 99 HHP-NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY 176 (297)
Q Consensus 99 ~~~-~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~y 176 (297)
... ++.+|||+|||+|.++..+++..+ .+|++||+++.+++.|++++..++ -.++++++.+|+.++... ..++|
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~---~~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ---LEDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT---CTTTEEEECSCGGGGGGTSCTTCE
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC---CcccEEEEECcHHHhhhhhccCCc
Confidence 334 678999999999999999998754 499999999999999999987553 135899999999887643 25789
Q ss_pred eEEEEcCCCCCC---C--CCc--c-------CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 177 DVIIGDLADPIE---G--GPC--Y-------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 177 D~Ii~D~~~~~~---~--~p~--~-------~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
|+|++|++-... . .+. . ...-.++++. +.+.|+|||.+++-.. + .....+...+++.
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~-~------~~~~~~~~~l~~~ 191 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRV-AASLLKQGGKANFVHR-P------ERLLDIIDIMRKY 191 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHH-HHHHEEEEEEEEEEEC-T------TTHHHHHHHHHHT
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHH-HHHHccCCcEEEEEEc-H------HHHHHHHHHHHHC
Confidence 999999762110 0 000 0 0112468888 7999999999988532 1 2345566667654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-13 Score=112.42 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+ -.++++++.+|+.+++.. ..++||
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~fD 118 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRALEQFYEEKLQFD 118 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhC---CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence 46789999999999999988875 45799999999999999999886542 125899999999887643 257899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHH--cccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGvl~~~~~ 220 (297)
+|+++++-.. ....+.++. + .+.|+|||++++...
T Consensus 119 ~i~~~~~~~~-------~~~~~~~~~-l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 119 LVLLDPPYAK-------QEIVSQLEK-MLERQLLTNEAVIVCETD 155 (187)
T ss_dssp EEEECCCGGG-------CCHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCc-------hhHHHHHHH-HHHhcccCCCCEEEEEeC
Confidence 9999975111 112355666 6 789999999998764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=111.71 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=97.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...+ -++++++.+|+.++. ..++||+|++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~~D~i~~ 138 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK----LENIEPVQSRVEEFP--SEPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEECCTTTSC--CCSCEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEecchhhCC--ccCCcCEEEE
Confidence 4679999999999999999987667899999999999999999876542 245999999987754 2468999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGW 261 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~ 261 (297)
....+ -..+++. +.+.|+|||.+++..+. ...+.+..+ + +-|..+.......|...+...+
T Consensus 139 ~~~~~----------~~~~l~~-~~~~L~~gG~l~~~~~~----~~~~~~~~~---~-~g~~~~~~~~~~~~~~~~~~~~ 199 (207)
T 1jsx_A 139 RAFAS----------LNDMVSW-CHHLPGEQGRFYALKGQ----MPEDEIALL---P-EEYQVESVVKLQVPALDGERHL 199 (207)
T ss_dssp SCSSS----------HHHHHHH-HTTSEEEEEEEEEEESS----CCHHHHHTS---C-TTEEEEEEEEEECC--CCEEEE
T ss_pred eccCC----------HHHHHHH-HHHhcCCCcEEEEEeCC----CchHHHHHH---h-cCCceeeeeeeccCCCCCceEE
Confidence 64311 2378888 79999999999987642 122222221 1 2343333222245655554566
Q ss_pred EEEecC
Q 022451 262 IMVSIY 267 (297)
Q Consensus 262 ~~as~~ 267 (297)
+++.+.
T Consensus 200 ~~~~k~ 205 (207)
T 1jsx_A 200 VVIKAN 205 (207)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 666554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=114.05 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=83.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++...+ -++++++.+|+.+++....++||+|++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 56899999999999999877753 4699999999999999999887543 268999999999988655678999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
|++-.. . ...++++. +. +.|+|||++++.+.
T Consensus 129 ~~p~~~------~-~~~~~l~~-l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 129 DPPFRR------G-LLEETINL-LEDNGWLADEALIYVESE 161 (202)
T ss_dssp CCSSST------T-THHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred CCCCCC------C-cHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence 976211 1 12356666 54 45999999988753
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=119.26 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.++.+|||+|||+|.++..+++.. .+|++||+|+.+++.|++++..++ +.+.+++++.+|+.+++.. ..++||
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCce
Confidence 456799999999999999999853 399999999999999999987653 2233699999999998754 256899
Q ss_pred EEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|++.-.. .+...++ -.++++. +.+.|+|||++++..
T Consensus 228 ~Ii~dPP~~~~-~~~~~~~~~~~~~~~ll~~-~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 228 IILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLT 272 (332)
T ss_dssp EEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEE
T ss_pred EEEECCccccC-CchHHHHHHHHHHHHHHHH-HHHhcCcCcEEEEEE
Confidence 99999862110 1101111 2467887 689999999966654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-13 Score=114.14 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=84.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCC-ceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES-YDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~-yD~I 179 (297)
++.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|++++...+ +..++++++.+|+.+++.. ..++ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHhhccCCCCCEE
Confidence 56799999999999999877753 4699999999999999999986542 1125899999999988654 2467 9999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHH--cccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGvl~~~~~ 220 (297)
++|++-.. . ...++++. + .+.|+|||++++.+.
T Consensus 130 ~~~~~~~~------~-~~~~~l~~-~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 130 FLDPPFHF------N-LAEQAISL-LCENNWLKPNALIYVETE 164 (201)
T ss_dssp EECCCSSS------C-HHHHHHHH-HHHTTCEEEEEEEEEEEE
T ss_pred EECCCCCC------c-cHHHHHHH-HHhcCccCCCcEEEEEEC
Confidence 99976211 1 12366777 6 578999999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-13 Score=115.92 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=94.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--cCCCCCCCeEEEEcchHHHHh--ccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAFSDPRLELVINDARAELE--SRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~--~~~~~~~rv~~~~~Da~~~l~--~~~~~y 176 (297)
....+|||||||+|.++..+++..+..+|++||+++.+++.|++.+... ......++++++.+|+..++. -.++.|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999998777789999999999999999875421 000123689999999987554 235789
Q ss_pred eEEEEcCCCCCCCC--CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 177 DVIIGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 177 D~Ii~D~~~~~~~~--p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
|.|++..++|+... ....+....+++. +.++|+|||.|++.+. .......+...+.+
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~-~~~~LkpGG~l~~~td------~~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAE-YAYVLRVGGLVYTITD------VLELHDWMCTHFEE 183 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHHT
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHH-HHHHCCCCCEEEEEeC------CHHHHHHHHHHHHH
Confidence 99999877765211 0123445689999 8999999999998753 23344455555554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=108.11 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=82.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||+|||+|.++..+++. ..+|++||+++.+++.|++++...+ -++++++.+|........+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~----~~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLG----IENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHT----CCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCcHHHHHhhccCCcCEEE
Confidence 56789999999999999999986 5799999999999999999886542 26899999887664323457899999
Q ss_pred EcCC-CCCCCCCc--cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++. -+...... ..-....+++. +.+.|+|||.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEK-ILDRLEVGGRLAIMI 135 (185)
T ss_dssp EEEC-----------CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EeCCCCCCcchhcccChhhHHHHHHH-HHHhcCCCcEEEEEE
Confidence 9842 22100000 00112357788 789999999998765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=107.75 Aligned_cols=115 Identities=13% Similarity=0.041 Sum_probs=87.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+ -.++++++.+|+.++....+++||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN---LIDRVTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT---CGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCCeEEEECCHHHHhhhccCCceEE
Confidence 567899999999999999999863 45699999999999999999876542 13689999999987754455789999
Q ss_pred EEcCCC-CCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLAD-PIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~-~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++++- |..... ...-...++++. +.+.|+|||.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSK-AMELLVTGGIITVVI 139 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHH-HHHhCcCCCEEEEEE
Confidence 999742 211000 000112468888 799999999998775
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.5e-13 Score=108.74 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc---CCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~---~~~yD~ 178 (297)
++++|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++.... -+++++.+|+.+++... .++||+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG-----LGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT-----CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHcC-----CceEEEeccHHHHHHhhhccCCceEE
Confidence 67899999999999999999864 349999999999999999887542 17999999998876432 347999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEecCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQAGP 221 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~~~ 221 (297)
|+++++-. . . ..++++. +. +.|+|||++++.+..
T Consensus 114 i~~~~~~~-~-~------~~~~~~~-~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 114 AFMAPPYA-M-D------LAALFGE-LLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEECCCTT-S-C------TTHHHHH-HHHHTCEEEEEEEEEEEET
T ss_pred EEECCCCc-h-h------HHHHHHH-HHhhcccCCCcEEEEEeCC
Confidence 99997532 1 1 2267777 67 999999999988643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=122.02 Aligned_cols=130 Identities=16% Similarity=0.064 Sum_probs=98.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++... .+|+++|+|+.+++.|++++..++. .++++++.+|+.+++. .++||+|+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~~---~~~v~~~~~D~~~~~~--~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKV---EDRMSAYNMDNRDFPG--ENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTC---TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEECCHHHhcc--cCCccEEE
Confidence 4578999999999999999998743 3899999999999999999876541 3579999999988765 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
+|++.. ..++++. +.+.|+|||++++....+...........+.+.+++..-.+..
T Consensus 198 ~~~p~~----------~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCchh----------HHHHHHH-HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 987521 1367777 7899999999998764431122234556677777766544443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=109.54 Aligned_cols=140 Identities=17% Similarity=0.210 Sum_probs=99.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++.... -++++++.+|+..+. .++||+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~~fD~i 129 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNG----IYDIALQKTSLLADV---DGKFDLI 129 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT----CCCCEEEESSTTTTC---CSCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEeccccccC---CCCceEE
Confidence 356789999999999999998875 46799999999999999999887542 234999999987653 4789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCc
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADT 258 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~ 258 (297)
+++.+.+ . ...+++. +.+.|+|||.+++... .......+.+.+++. |..+.... .+.
T Consensus 130 ~~~~~~~-------~--~~~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~~~~~Gf~~~~~~~------~~~ 187 (205)
T 3grz_A 130 VANILAE-------I--LLDLIPQ-LDSHLNEDGQVIFSGI------DYLQLPKIEQALAENSFQIDLKMR------AGR 187 (205)
T ss_dssp EEESCHH-------H--HHHHGGG-SGGGEEEEEEEEEEEE------EGGGHHHHHHHHHHTTEEEEEEEE------ETT
T ss_pred EECCcHH-------H--HHHHHHH-HHHhcCCCCEEEEEec------CcccHHHHHHHHHHcCCceEEeec------cCC
Confidence 9985421 1 2467788 7999999999988632 122345566666654 44332221 234
Q ss_pred eeEEEEecCCC
Q 022451 259 WGWIMVSIYNP 269 (297)
Q Consensus 259 ~~~~~as~~~~ 269 (297)
|..++..+.+.
T Consensus 188 w~~~~~~~~~~ 198 (205)
T 3grz_A 188 WIGLAISRKHE 198 (205)
T ss_dssp EEEEEEEECC-
T ss_pred EEEEEEecccc
Confidence 66555555543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-12 Score=107.81 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=93.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++.++++. ..+|++||+++.+++.|++++...+ -..+++++.+|+.+.+.. ..+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g---~~~~v~~~~~d~~~~~~~-~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYG---LSPRMRAVQGTAPAALAD-LPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCTTGGGTT-SCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCEEEEeCchhhhccc-CCCCCEE
Confidence 456789999999999999999987 5799999999999999999876442 123899999999886644 3579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
+++... ..++++. +.+.|+|||.+++... ..+....+.+.+++..
T Consensus 127 ~~~~~~-----------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g 171 (204)
T 3njr_A 127 FIGGGG-----------SQALYDR-LWEWLAPGTRIVANAV------TLESETLLTQLHARHG 171 (204)
T ss_dssp EECSCC-----------CHHHHHH-HHHHSCTTCEEEEEEC------SHHHHHHHHHHHHHHC
T ss_pred EECCcc-----------cHHHHHH-HHHhcCCCcEEEEEec------CcccHHHHHHHHHhCC
Confidence 987521 1238888 7999999999998753 3455667777777664
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=120.67 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=80.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+...+|||||||+|..+..++++. .+|++||+++.|++.|++ .++++++.+|+.+. .-.+++||+|
T Consensus 37 ~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----------~~~v~~~~~~~e~~-~~~~~sfD~v 103 (257)
T 4hg2_A 37 APARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----------HPRVTYAVAPAEDT-GLPPASVDVA 103 (257)
T ss_dssp SSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----------CTTEEEEECCTTCC-CCCSSCEEEE
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----------cCCceeehhhhhhh-cccCCcccEE
Confidence 4567899999999999999999864 689999999999987764 37899999998653 3346789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
++...-++. -...++++ ++++|+|||+|++...
T Consensus 104 ~~~~~~h~~-------~~~~~~~e-~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 104 IAAQAMHWF-------DLDRFWAE-LRRVARPGAVFAAVTY 136 (257)
T ss_dssp EECSCCTTC-------CHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred EEeeehhHh-------hHHHHHHH-HHHHcCCCCEEEEEEC
Confidence 997654441 13478999 8999999999988753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-13 Score=115.16 Aligned_cols=109 Identities=9% Similarity=0.080 Sum_probs=82.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.|+++.... .++++++.+|+.+.+.. .+++||+|
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD~V 132 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc-----CCCeEEEecCHHHhhcccCCCceEEE
Confidence 467899999999999999998753 458999999999999999976543 26799999999887533 35789999
Q ss_pred EEcCCCCCCCCCccCcc-cHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~-t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++|.+... .+..... ...+++. ++++|+|||+|++.
T Consensus 133 ~~d~~~~~--~~~~~~~~~~~~l~~-~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 133 LYDTYPLS--EETWHTHQFNFIKNH-AFRLLKPGGVLTYC 169 (236)
T ss_dssp EECCCCCB--GGGTTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred EECCcccc--hhhhhhhhHHHHHHH-HHHhcCCCeEEEEE
Confidence 99754321 1111111 1256888 79999999999864
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=106.31 Aligned_cols=109 Identities=21% Similarity=0.289 Sum_probs=82.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-CCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++.+...... ...++++++.+|+.. +....++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCEE
Confidence 4678999999999999999998766689999999999999999987543210 001389999999732 33334789999
Q ss_pred EEcCCCCCCCCCccCccc---HHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-. .+.. ..+++. +++.|+|||+++..
T Consensus 107 ~~~~~l~-------~~~~~~~~~~l~~-~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 107 TVIEVIE-------HLDENRLQAFEKV-LFEFTRPQTVIVST 140 (219)
T ss_dssp EEESCGG-------GCCHHHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred EEHHHHH-------hCCHHHHHHHHHH-HHHhhCCCEEEEEc
Confidence 9865421 2221 378898 79999999987765
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=114.31 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=87.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~ 178 (297)
.++++||+||||+|..+..+++..+..+|+++|+++.+++.|++++...+ ..++++++.+|+.+++... .++||+
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG---LESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT---CTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECCHHHHHHhcccCCCccE
Confidence 46789999999999999999987667899999999999999999986542 1357999999998876543 578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+ ...++++. +.+.|+|||++++..
T Consensus 130 I~~~~~~~---------~~~~~l~~-~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 130 LFIDAAKG---------QYRRFFDM-YSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEGGGS---------CHHHHHHH-HGGGEEEEEEEEEET
T ss_pred EEECCCHH---------HHHHHHHH-HHHHcCCCeEEEEEc
Confidence 99986421 12478888 799999999999873
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-12 Score=112.91 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=96.6
Q ss_pred eeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 69 g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
|..+.++....+..+......+.+.. .+....+.+|||||||+|.++..+++. +..+|++||+|+.+++.|+++...
T Consensus 92 ~~~~~v~~~~lipr~~te~lv~~~l~--~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 92 GLSFLVEEGVFVPRPETEELVELALE--LIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp TEEEECCTTSCCCCTTHHHHHHHHHH--HHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCceecChhHHHHHHHHHH--HhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 55666665444443332222222221 111125579999999999999999988 778999999999999999999765
Q ss_pred ccCCCCCCCeEEEEcchHHHHhccCCCc---eEEEEcCCC-CCC--------CCCccCcc----cHHHHHHHHc-ccCCC
Q 022451 149 NKEAFSDPRLELVINDARAELESRKESY---DVIIGDLAD-PIE--------GGPCYKLY----TKSFYEFVVK-PRLNP 211 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~~~~y---D~Ii~D~~~-~~~--------~~p~~~L~----t~ef~~~~~~-~~L~p 211 (297)
.+ -..+++++.+|+.+.+. ++| |+|+++++- +.. ..|...|+ ..++++. +. +.|+|
T Consensus 169 ~~---l~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~-i~~~~l~p 241 (284)
T 1nv8_A 169 HG---VSDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYRE-FFGRYDTS 241 (284)
T ss_dssp TT---CTTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHH-HHHHCCCT
T ss_pred cC---CCCceEEEECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHH-HHHhcCCC
Confidence 43 13479999999988664 468 999999752 110 01100000 1278999 78 99999
Q ss_pred CcEEEEecC
Q 022451 212 EGIFVTQAG 220 (297)
Q Consensus 212 gGvl~~~~~ 220 (297)
||.+++..+
T Consensus 242 gG~l~~e~~ 250 (284)
T 1nv8_A 242 GKIVLMEIG 250 (284)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEEEC
Confidence 999998753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=109.25 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++.+.... ..++++++.+|+.+. ....++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~~D~v~ 116 (219)
T 3dlc_A 42 ITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN---LNDRIQIVQGDVHNI-PIEDNYADLIV 116 (219)
T ss_dssp CCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc---ccCceEEEEcCHHHC-CCCcccccEEE
Confidence 34459999999999999999987 56799999999999999999876542 246899999998663 23457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+.. + ....+++. +.+.|+|||.+++..
T Consensus 117 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 117 SRGSVFFW--E----DVATAFRE-IYRILKSGGKTYIGG 148 (219)
T ss_dssp EESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ECchHhhc--c----CHHHHHHH-HHHhCCCCCEEEEEe
Confidence 98653221 1 12478888 799999999998863
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=116.78 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++|||+|||+|.++..+++. +..+|++||+++.+++.|++++..++ +.+.+++++.+|+.+++.. ...+||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence 46789999999999999999985 35699999999999999999987653 1222899999999998754 246899
Q ss_pred EEEEcCCCCCCC-CCccCc--ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEG-GPCYKL--YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~-~p~~~L--~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|++..... ...... .-.++++. +.+.|+|||++++.++++
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~-~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence 999998742100 000111 11245666 689999999999887654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-11 Score=101.42 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=96.5
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+||++|||+|.++..+++.. .+|+++|+++.+++.|++++...+ ..++++++.+|+.+.+... ++||+
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~ 103 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCKI-PDIDI 103 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTTS-CCEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecCHHHhcccC-CCCCE
Confidence 34567899999999999999999865 799999999999999999876442 1268999999998866432 47999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCcee
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~ 246 (297)
|+++...+ . -.++++. +.+.|+|||.+++... .......+.+.+++. | .+.
T Consensus 104 v~~~~~~~-------~--~~~~l~~-~~~~l~~gG~l~~~~~------~~~~~~~~~~~l~~~g~-~~~ 155 (192)
T 1l3i_A 104 AVVGGSGG-------E--LQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLGF-DVN 155 (192)
T ss_dssp EEESCCTT-------C--HHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTTC-CCE
T ss_pred EEECCchH-------H--HHHHHHH-HHHhcCCCcEEEEEec------CcchHHHHHHHHHHCCC-ceE
Confidence 99985421 1 2578898 7999999999988742 334556677777765 6 443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=112.23 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=89.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC----CCCCCeEEEEcchHHHHhc--cCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----FSDPRLELVINDARAELES--RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~----~~~~rv~~~~~Da~~~l~~--~~~ 174 (297)
+++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++...... ..-++++++.+|+.+++.. ...
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3567899999999999999998766679999999999999999887543100 0125799999999887653 356
Q ss_pred CceEEEEcCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|.|++..++|+.... ...+...++++. +.+.|+|||+|++.+
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~-~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSE-YAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHH-HHHHcCCCCEEEEEe
Confidence 89999988776652110 123445789999 899999999999864
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=106.62 Aligned_cols=135 Identities=11% Similarity=0.070 Sum_probs=95.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+.. .++++++.+|+.++. ..++||+|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~--~~~~fD~v 118 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR------WSHISWAATDILQFS--TAELFDLI 118 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT------CSSEEEEECCTTTCC--CSCCEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc------CCCeEEEEcchhhCC--CCCCccEE
Confidence 3456899999999999999999863 6899999999999999998653 258999999987764 45789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC---CcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~---~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++...-.....+ . .-..+++. +.+.|+|||++++.+..+. .|........+.+.+.+.+..+...
T Consensus 119 ~~~~~l~~~~~~--~-~~~~~l~~-~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 186 (216)
T 3ofk_A 119 VVAEVLYYLEDM--T-QMRTAIDN-MVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEALTEVERV 186 (216)
T ss_dssp EEESCGGGSSSH--H-HHHHHHHH-HHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHHHHSEEEEEE
T ss_pred EEccHHHhCCCH--H-HHHHHHHH-HHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHHhhccceEEE
Confidence 997542220011 0 01367888 7999999999998541110 0122223345666666667665443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=113.51 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++. +..+|++||+++.+++.|++.+...+ -.++++++.+|+.+. ....++||+|+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~i~ 119 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG---LQNRVTGIVGSMDDL-PFRNEELDLIW 119 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC---CCcCcEEEEcChhhC-CCCCCCEEEEE
Confidence 56789999999999999999987 56799999999999999999876442 236899999998653 22357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. +-...+++. +.+.|+|||++++..
T Consensus 120 ~~~~~~~-------~~~~~~l~~-~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 120 SEGAIYN-------IGFERGLNE-WRKYLKKGGYLAVSE 150 (267)
T ss_dssp ESSCGGG-------TCHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred EcCCcee-------cCHHHHHHH-HHHHcCCCCEEEEEE
Confidence 8764322 123578998 899999999998874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-12 Score=118.99 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=96.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++..+++..|..+|++||+|+.+++.|++++..++.. +..+++++.+|+.+.+ ..++||+|+
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~-~~~~v~~~~~D~~~~~--~~~~fD~Ii 297 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVL 297 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGGGEEEEECSTTTTC--CTTCEEEEE
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC-cCceEEEEechhhccC--CCCCeeEEE
Confidence 3458999999999999999999877889999999999999999998754210 1236889999988754 346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++++-+..... ..-...++++. +.++|+|||++++-... ... ....+++.|..+...
T Consensus 298 ~nppfh~~~~~-~~~~~~~~l~~-~~~~LkpgG~l~iv~n~-----~~~----~~~~l~~~fg~~~~~ 354 (375)
T 4dcm_A 298 CNPPFHQQHAL-TDNVAWEMFHH-ARRCLKINGELYIVANR-----HLD----YFHKLKKIFGNCTTI 354 (375)
T ss_dssp ECCCC--------CCHHHHHHHH-HHHHEEEEEEEEEEEET-----TSC----HHHHHHHHHSCCEEE
T ss_pred ECCCcccCccc-CHHHHHHHHHH-HHHhCCCCcEEEEEEEC-----CcC----HHHHHHHhcCCEEEE
Confidence 99874321011 11223478999 79999999999885422 111 135567778876644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=111.70 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=84.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|..+..+++..+ .+|++||+++.+++.|++++...+ -.++++++.+|+... ...+++||+|+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v~ 119 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN---CADRVKGITGSMDNL-PFQNEELDLIW 119 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-SSCTTCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC---CCCceEEEECChhhC-CCCCCCEEEEE
Confidence 4567999999999999999998764 499999999999999999876543 235799999998543 23457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. +-..++++. +.+.|+|||++++..
T Consensus 120 ~~~~l~~-------~~~~~~l~~-~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 120 SEGAIYN-------IGFERGMNE-WSKYLKKGGFIAVSE 150 (257)
T ss_dssp EESCSCC-------CCHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred ecChHhh-------cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence 9865322 123578898 899999999998874
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=112.12 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=83.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|..+..+++..+..+++++|+++.+++.|++.+... ++++++.+|+.+... .++||+|+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~~~--~~~fD~v~ 114 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN------LKVKYIEADYSKYDF--EEKYDMVV 114 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC------TTEEEEESCTTTCCC--CSCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC------CCEEEEeCchhccCC--CCCceEEE
Confidence 4678999999999999999998777789999999999999999986532 489999999876532 27899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ .....++++. +++.|+|||.+++..
T Consensus 115 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 115 SALSIHH--LE--DEDKKELYKR-SYSILKESGIFINAD 148 (234)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EeCcccc--CC--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 9854221 11 1111258898 799999999998764
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=110.91 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=95.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... + .++++++.+|+.+. .-..++||
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~-~~~~~~~D 168 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ----VENVRFHLGKLEEA-ELEEAAYD 168 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEESCGGGC-CCCTTCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC----CCCEEEEECchhhc-CCCCCCcC
Confidence 356789999999999999999986 55689999999999999999987643 2 36899999998775 11236799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCcee
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~ 246 (297)
+|++|.++++ ++++. +.+.|+|||.+++... ..+....+.+.+++. |..+.
T Consensus 169 ~v~~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 169 GVALDLMEPW-----------KVLEK-AALALKPDRFLVAYLP------NITQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------CHHHHHHHHHHHTTTTEEEEE
T ss_pred EEEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHHCCCceEE
Confidence 9999865321 56777 7899999999998752 234556777777654 54443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-12 Score=107.38 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-CCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++.+...... ...++++++.+|+. .+....++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT-YQDKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT-SCCGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc-cccccCCCcCEE
Confidence 4678999999999999999998766679999999999999999987543210 00138999999974 233334689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-.. .+. -.-..+++. +++.|+|||++++.
T Consensus 107 ~~~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 107 TVIEVIEH--LDL--SRLGAFERV-LFEFAQPKIVIVTT 140 (217)
T ss_dssp EEESCGGG--CCH--HHHHHHHHH-HHTTTCCSEEEEEE
T ss_pred eeHHHHHc--CCH--HHHHHHHHH-HHHHcCCCEEEEEc
Confidence 98754221 110 011478888 79999999988765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=114.25 Aligned_cols=111 Identities=18% Similarity=0.075 Sum_probs=85.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..+ .+|++||+++.+++.|++.+...+ -.++++++.+|+.++ +++||+|
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWEEF----DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC---CSSCEEEEECCGGGC----CCCCSEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECCHHHc----CCCccEE
Confidence 35677999999999999999998754 789999999999999999876542 135899999999775 5789999
Q ss_pred EEcCCCCCCCCCc---cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.....|. ..-.-..+++. +.+.|+|||.+++..
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT 183 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHH-HHHSSCTTCEEEEEE
T ss_pred EEcchHHhcCccccccchhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 9875422111110 01122578999 799999999999875
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=106.03 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD~ 178 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|+++... .++++++.+|+..... ....+||+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE------RENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT------CTTEEEEECCTTCGGGGTTTSCCEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc------CCCeEEEECCCCCcccccccCccEEE
Confidence 456899999999999999999875567999999999999999987532 2689999999876211 11267999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+++..++. ....+++. +.+.|+|||.+++.
T Consensus 147 v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 147 IYEDVAQPN--------QAEILIKN-AKWFLKKGGYGMIA 177 (230)
T ss_dssp EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEE
T ss_pred EEEecCChh--------HHHHHHHH-HHHhCCCCcEEEEE
Confidence 998764321 12467888 79999999999884
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=106.31 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--~~~~~~yD 177 (297)
.++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.+++..... ++++++.+|+.+.. ....++||
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------RNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------CCCEEEEccCCCcchhhcccCCce
Confidence 45679999999999999999976 34579999999999999998875422 68999999987632 22245899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|.+.+. ....+++. +.+.|+|||.+++..
T Consensus 146 ~v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 146 VIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAV 178 (227)
T ss_dssp EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEECCCCHh--------HHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9999876321 12345888 799999999988763
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=112.87 Aligned_cols=107 Identities=18% Similarity=0.295 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+++. ..+|++||+++.+++.|++.+...+ -.++++++.+|+.+.....+++||+|+
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKG---VSDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-C---CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence 45789999999999999999986 4689999999999999999876432 126899999999876544568899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ . ...+++. ++++|+|||++++..
T Consensus 142 ~~~~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 142 FHAVLEW--VA--D--PRSVLQT-LWSVLRPGGVLSLMF 173 (285)
T ss_dssp EESCGGG--CS--C--HHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ECchhhc--cc--C--HHHHHHH-HHHHcCCCeEEEEEE
Confidence 9755322 11 1 2478899 899999999998864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=113.43 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=94.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.... -.++++++.+|+.+.+ ..++||+
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~~D~ 184 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKDVDA 184 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCSEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCCCEEEEECCHHHcc--cCCccCE
Confidence 355789999999999999999986 556899999999999999999876432 1257999999988764 2357999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCcee
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~ 246 (297)
|++|+++++ ++++. +.+.|+|||.+++... .......+.+.+++. |..+.
T Consensus 185 V~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 185 LFLDVPDPW-----------NYIDK-CWEALKGGGRFATVCP------TTNQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp EEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHSSEEEEE
T ss_pred EEECCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCceeE
Confidence 999875432 56677 7899999999998752 223456666667653 44333
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=113.14 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=94.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... + .++++++.+|+.+.+ .+++||
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g----~~~v~~~~~d~~~~~--~~~~fD 181 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFI--SDQMYD 181 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCC--CSCCEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECchhccC--cCCCcc
Confidence 356689999999999999999986 56689999999999999999987643 2 268999999987743 246799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY 248 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~ 248 (297)
+|++|.+++. ++++. +.+.|+|||++++.+. .......+.+.+++. |..+..+
T Consensus 182 ~Vi~~~~~~~-----------~~l~~-~~~~LkpgG~l~i~~~------~~~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 182 AVIADIPDPW-----------NHVQK-IASMMKPGSVATFYLP------NFDQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp EEEECCSCGG-----------GSHHH-HHHTEEEEEEEEEEES------SHHHHHHHHHHSGGGTEEEEEEE
T ss_pred EEEEcCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCeEEEEE
Confidence 9999765321 56777 7899999999998752 223445666666654 5544433
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=105.09 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+.+|||||||+|.++..+++. ..+|+++|+++.+++.|++. ++++++..|+...... ...+||
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA----------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT----------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh----------cccccchhhHHhhcccccccCCCcc
Confidence 45689999999999999999986 45899999999999999985 4567889998876322 235699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|++...-.. .. -..+++. +++.|+|||.+++...
T Consensus 119 ~v~~~~~l~~-~~------~~~~l~~-~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 119 LICANFALLH-QD------IIELLSA-MRTLLVPGGALVIQTL 153 (227)
T ss_dssp EEEEESCCCS-SC------CHHHHHH-HHHTEEEEEEEEEEEC
T ss_pred EEEECchhhh-hh------HHHHHHH-HHHHhCCCeEEEEEec
Confidence 9999765331 11 2378888 8999999999998763
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-12 Score=118.72 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=101.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++. ..+|++||+|+.+++.|++++..+. .+++++.+|+.+.... .++||+|+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~-----~~v~~~~~D~~~~~~~-~~~fD~Ii 303 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANA-----LKAQALHSDVDEALTE-EARFDIIV 303 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTSCT-TCCEEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEcchhhcccc-CCCeEEEE
Confidence 35679999999999999999986 3599999999999999999987542 3489999999876542 47899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCcee
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG 260 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~ 260 (297)
++++-+..... ..-...++++. ++++|+|||.+++..... . .....+.+.|..+.... ..++.
T Consensus 304 ~npp~~~~~~~-~~~~~~~~l~~-~~~~LkpGG~l~iv~n~~---l------~~~~~l~~~f~~v~~l~------~~gF~ 366 (381)
T 3dmg_A 304 TNPPFHVGGAV-ILDVAQAFVNV-AAARLRPGGVFFLVSNPF---L------KYEPLLEEKFGAFQTLK------VAEYK 366 (381)
T ss_dssp ECCCCCTTCSS-CCHHHHHHHHH-HHHHEEEEEEEEEEECTT---S------CHHHHHHHHHSCCEEEE------ESSSE
T ss_pred ECCchhhcccc-cHHHHHHHHHH-HHHhcCcCcEEEEEEcCC---C------ChHHHHHHhhccEEEEe------CCCEE
Confidence 99774431110 11123478888 799999999999876432 1 22355666777765431 12345
Q ss_pred EEEEecCCCC
Q 022451 261 WIMVSIYNPH 270 (297)
Q Consensus 261 ~~~as~~~~~ 270 (297)
++-+.+....
T Consensus 367 Vl~a~~~~~~ 376 (381)
T 3dmg_A 367 VLFAEKRGRH 376 (381)
T ss_dssp EEEEECC---
T ss_pred EEEEEEeccc
Confidence 5555555543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=105.76 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD~ 178 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.+.+.... .+++.++.+|+..... ...++||+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~------~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE------RNNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH------CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc------CCCeEEEEcCCCCchhhcccccceeE
Confidence 456799999999999999988865557999999999987655443221 1468889999876411 12368999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+++...+. ....+++. +++.|+|||.+++..
T Consensus 130 V~~~~~~~~--------~~~~~l~~-~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEeccChh--------HHHHHHHH-HHHHhCCCCEEEEEE
Confidence 999954321 12245788 799999999998874
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.2e-12 Score=111.14 Aligned_cols=107 Identities=20% Similarity=0.129 Sum_probs=83.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+...+ -.++++++.+|+.+... +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYVA--NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCCC--SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECChHhCCc--CCCCCEE
Confidence 4567899999999999999999865 4689999999999999999876432 13589999999876532 5789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ --..+++. +++.|+|||.+++..
T Consensus 108 ~~~~~~~~--~~----~~~~~l~~-~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 108 ACVGATWI--AG----GFAGAEEL-LAQSLKPGGIMLIGE 140 (256)
T ss_dssp EEESCGGG--TS----SSHHHHHH-HTTSEEEEEEEEEEE
T ss_pred EECCChHh--cC----CHHHHHHH-HHHHcCCCeEEEEec
Confidence 98543211 11 12578898 899999999998753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=96.70 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=93.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++..+++ +..+++++|+++.+++.|++++...+ -++++++.+|+.+.+.. ++||+|
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~--~~~D~i 104 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN----IKNCQIIKGRAEDVLDK--LEFNKA 104 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT----CCSEEEEESCHHHHGGG--CCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEECCccccccC--CCCcEE
Confidence 35678999999999999999998 46899999999999999999886542 25799999999885543 689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCcee
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (297)
+++.. . . ..++++. +++. |||.+++... .......+.+.+++..-.+.
T Consensus 105 ~~~~~-~---~------~~~~l~~-~~~~--~gG~l~~~~~------~~~~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 105 FIGGT-K---N------IEKIIEI-LDKK--KINHIVANTI------VLENAAKIINEFESRGYNVD 152 (183)
T ss_dssp EECSC-S---C------HHHHHHH-HHHT--TCCEEEEEES------CHHHHHHHHHHHHHTTCEEE
T ss_pred EECCc-c---c------HHHHHHH-HhhC--CCCEEEEEec------ccccHHHHHHHHHHcCCeEE
Confidence 99865 1 1 2477887 6666 9999998752 33456677777877654443
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=110.49 Aligned_cols=139 Identities=14% Similarity=0.040 Sum_probs=96.2
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKE 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~ 174 (297)
...++.+|||+|||+|+.+..+++..+. .+|+++|+++.+++.+++++...+ -++++++.+|+..+... ..+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG----VLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCHHHHHHHHHHTTC
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC----CCcEEEEeCChHhcchhhhhccc
Confidence 3456789999999999999999875433 799999999999999999876542 24899999999887542 256
Q ss_pred CceEEEEcCCCCCCCC----Cc--------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 175 SYDVIIGDLADPIEGG----PC--------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~----p~--------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
+||+|++|++-..... |. ..-...++++. +.+.|+|||.+++.+++.. ..+ ...+++.+-+.+
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~stcs~~---~~e-ne~~v~~~l~~~ 230 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDI-GIDLLKKDGELVYSTCSME---VEE-NEEVIKYILQKR 230 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHH-HHHHEEEEEEEEEEESCCC---TTS-SHHHHHHHHHHC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEECCCC---hHH-hHHHHHHHHHhC
Confidence 8999999976211000 00 00122578888 7899999999998875431 111 134444444455
Q ss_pred Ccee
Q 022451 243 KYVV 246 (297)
Q Consensus 243 ~~v~ 246 (297)
+...
T Consensus 231 ~~~~ 234 (274)
T 3ajd_A 231 NDVE 234 (274)
T ss_dssp SSEE
T ss_pred CCcE
Confidence 5543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=108.27 Aligned_cols=124 Identities=12% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++++.... -+++++++.+|+.+.+. ..+.||+|+
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~-~~~~~D~v~ 163 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFN---LGKNVKFFNVDFKDAEV-PEGIFHAAF 163 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTT---CCTTEEEECSCTTTSCC-CTTCBSEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC---CCCcEEEEEcChhhccc-CCCcccEEE
Confidence 46789999999999999999987 5799999999999999999876432 13689999999877541 235799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++++++. ++++. +.+.|+|||.+++... ..+....+.+.+++.|..+..+
T Consensus 164 ~~~~~~~-----------~~l~~-~~~~L~~gG~l~~~~~------~~~~~~~~~~~l~~~f~~~~~~ 213 (248)
T 2yvl_A 164 VDVREPW-----------HYLEK-VHKSLMEGAPVGFLLP------TANQVIKLLESIENYFGNLEVV 213 (248)
T ss_dssp ECSSCGG-----------GGHHH-HHHHBCTTCEEEEEES------SHHHHHHHHHHSTTTEEEEEEE
T ss_pred ECCcCHH-----------HHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhhCCcceEE
Confidence 9865321 45677 7899999999998752 2345556666666545554443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-12 Score=107.50 Aligned_cols=152 Identities=13% Similarity=-0.011 Sum_probs=102.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++.+.... .++++++.+|+...- ...++||+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~ 109 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG----LKNVEVLKSEENKIP-LPDNTVDF 109 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECBTTBCS-SCSSCEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEecccccCC-CCCCCeeE
Confidence 3567899999999999999998864 56799999999999999999876542 257999999986532 23578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC-Cc-----CCchHHHHHHHHHHhh-CCceeEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG-IF-----SHTEVFSCIYNTLRQV-FKYVVPYSAH 251 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~-~~-----~~~~~~~~i~~~l~~~-F~~v~~~~~~ 251 (297)
|++...-.. .+ ....+++. +.+.|+|||.+++....+. .. ...-....+.+.+++. |..+....
T Consensus 110 v~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-- 180 (219)
T 3dh0_A 110 IFMAFTFHE--LS----EPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE-- 180 (219)
T ss_dssp EEEESCGGG--CS----SHHHHHHH-HHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE--
T ss_pred EEeehhhhh--cC----CHHHHHHH-HHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe--
Confidence 998765322 11 12578898 7999999999988642110 00 0111235566667665 65544322
Q ss_pred cCccCCceeEEEEecCC
Q 022451 252 IPSFADTWGWIMVSIYN 268 (297)
Q Consensus 252 vp~~~~~~~~~~as~~~ 268 (297)
++..+.++++.|..
T Consensus 181 ---~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 181 ---VGKYCFGVYAMIVK 194 (219)
T ss_dssp ---ETTTEEEEEEECC-
T ss_pred ---eCCceEEEEEEecc
Confidence 12335556666554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-12 Score=108.83 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=82.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+++..+ +++++|+++.+++.|++++... .++++++.+|+.+. ....++||+|+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~~D~v~ 108 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYVI 108 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-----CCCceEEECchhcC-CCCCCcEEEEE
Confidence 4578999999999999999988743 8999999999999999987644 26899999998763 22346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-... .. --..++++. +++.|+|||.+++..
T Consensus 109 ~~~~~~~~-~~---~~~~~~l~~-~~~~L~~gG~l~~~~ 142 (227)
T 1ve3_A 109 FIDSIVHF-EP---LELNQVFKE-VRRVLKPSGKFIMYF 142 (227)
T ss_dssp EESCGGGC-CH---HHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EcCchHhC-CH---HHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 88541110 00 012468888 799999999998874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=113.69 Aligned_cols=123 Identities=12% Similarity=0.215 Sum_probs=89.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhcc-----CCC--CCCCeEEEEcchHHHHhc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAF--SDPRLELVINDARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~-----~~~--~~~rv~~~~~Da~~~l~~ 171 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++.... ..+ ..++++++.+|+.+.+..
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 456789999999999999999986 455899999999999999999876310 001 126899999999875422
Q ss_pred -cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 172 -~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
..++||+|++|.++++ .+++. +.++|+|||.+++... .......+++.+++
T Consensus 183 ~~~~~fD~V~~~~~~~~-----------~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~ 234 (336)
T 2b25_A 183 IKSLTFDAVALDMLNPH-----------VTLPV-FYPHLKHGGVCAVYVV------NITQVIELLDGIRT 234 (336)
T ss_dssp -----EEEEEECSSSTT-----------TTHHH-HGGGEEEEEEEEEEES------SHHHHHHHHHHHHH
T ss_pred cCCCCeeEEEECCCCHH-----------HHHHH-HHHhcCCCcEEEEEeC------CHHHHHHHHHHHHh
Confidence 2457999999876543 25677 7999999999997742 34455666666665
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=123.98 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=90.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++. +..+|++||+|+.+++.|++++..++ +.+++++++.+|+.+++....++||+|+
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ng--l~~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNG--LTGRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTT--CCSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHhcCCCccEEE
Confidence 36789999999999999998874 46789999999999999999988764 2336899999999999987678999999
Q ss_pred EcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++.-......... .-.++++. +.+.|+|||+|++.+++
T Consensus 615 ~DPP~f~~~~~~~~~~~~~~~~~~ll~~-a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQRDHLALMKD-LKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECC
Confidence 998731100000011 12356777 68999999999987654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.5e-12 Score=113.41 Aligned_cols=126 Identities=14% Similarity=0.053 Sum_probs=95.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++..+++..+..+|++||+++.+++.|++++..++ -++++++.+|+.++ .. .++||+|
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~----l~~~~~~~~d~~~~-~~-~~~~D~V 190 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK----LNNVIPILADNRDV-EL-KDVADRV 190 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT----CSSEEEEESCGGGC-CC-TTCEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCEEEEECChHHc-Cc-cCCceEE
Confidence 356789999999999999999987556799999999999999999987653 25789999999887 43 5689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
++|++. . ..+++.. +.+.|+|||++++.+.... ....+.+....+.+.+.+.
T Consensus 191 i~d~p~----~------~~~~l~~-~~~~LkpgG~l~~s~~~~~-~~~~~~~~~~~~~~~~~~~ 242 (272)
T 3a27_A 191 IMGYVH----K------THKFLDK-TFEFLKDRGVIHYHETVAE-KIMYERPIERLKFYAEKNG 242 (272)
T ss_dssp EECCCS----S------GGGGHHH-HHHHEEEEEEEEEEEEEEG-GGTTTHHHHHHHHHHHHTT
T ss_pred EECCcc----c------HHHHHHH-HHHHcCCCCEEEEEEcCcc-ccccccHHHHHHHHHHHhC
Confidence 999763 1 1256777 6889999999988753221 1112345566666666543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=117.95 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
++++||||| |+|.++..+++..+..+|++||+|+.+++.|++++...+ + .+++++.+|+.+.+.. ..++||+|+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~--~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--Y--EDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--C--CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--C--CCEEEEEChhhhhchhhccCCccEEE
Confidence 578999999 999999999886555799999999999999999987543 1 3899999999875542 245899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCc-EEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-vl~~~~ 219 (297)
+|++-.. . . ...|++. +.+.|+||| ++++.+
T Consensus 247 ~~~p~~~----~-~--~~~~l~~-~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 247 TDPPETL----E-A--IRAFVGR-GIATLKGPRCAGYFGI 278 (373)
T ss_dssp ECCCSSH----H-H--HHHHHHH-HHHTBCSTTCEEEEEE
T ss_pred ECCCCch----H-H--HHHHHHH-HHHHcccCCeEEEEEE
Confidence 9975321 1 2 2689999 799999999 434443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=111.32 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=82.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+...+ .++++++.+|+.+. ...+++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~v~~~~~d~~~l-~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNG----HQQVEYVQGDAEQM-PFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCC-CC-CSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEecHHhC-CCCCCCEEEE
Confidence 3577899999999999999999874 499999999999999999875432 25799999998663 3345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-.+... -..+++. +++.|+|||.+++.
T Consensus 108 ~~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 108 TCRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLV 139 (260)
T ss_dssp EEESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred EEhhhhHhcCC------HHHHHHH-HHHHcCCCCEEEEE
Confidence 99855322111 2478898 89999999999875
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-12 Score=114.35 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=100.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++++|||+|||+|.++..+++. +..+|+++|+||.+++.++++...++. ..+++++.+|++++.. ...||.|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v---~~~v~~~~~D~~~~~~--~~~~D~V 196 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV---EDRMSAYNMDNRDFPG--ENIADRI 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC---TTTEEEECSCTTTCCC--CSCEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeCcHHHhcc--ccCCCEE
Confidence 367889999999999999999886 457899999999999999999887652 4689999999998864 4689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEE-ecCcc-CC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA-HIPSF-AD 257 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~-~vp~~-~~ 257 (297)
+++++.. +.+|+.. +.++|++||++.+....+...........+.+..++....+..... .+.+| |.
T Consensus 197 i~~~p~~----------~~~~l~~-a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~ 265 (278)
T 3k6r_A 197 LMGYVVR----------THEFIPK-ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPG 265 (278)
T ss_dssp EECCCSS----------GGGGHHH-HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTT
T ss_pred EECCCCc----------HHHHHHH-HHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEEEEEEEeECcC
Confidence 9997521 2367777 6789999999876542211111122233444444444444443321 34444 34
Q ss_pred ceeEE
Q 022451 258 TWGWI 262 (297)
Q Consensus 258 ~~~~~ 262 (297)
.|.++
T Consensus 266 ~~hvv 270 (278)
T 3k6r_A 266 VWHVV 270 (278)
T ss_dssp EEEEE
T ss_pred ccEEE
Confidence 45444
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=107.11 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|.++..+++.. . +|+++|+||.+++.|++++..++ -. ++++.+|+.+.+. .++||+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g-~-~v~gvDi~~~~v~~a~~n~~~~~----~~-v~~~~~d~~~~~~--~~~fD~Vv 189 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG-G-KALGVDIDPMVLPQAEANAKRNG----VR-PRFLEGSLEAALP--FGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-C-EEEEEESCGGGHHHHHHHHHHTT----CC-CEEEESCHHHHGG--GCCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC-C-eEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChhhcCc--CCCCCEEE
Confidence 567899999999999999988864 3 99999999999999999887553 12 8999999988653 46799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYV 245 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v 245 (297)
++...+ . -..+++. +.+.|+|||.+++... .......+.+.+++. |..+
T Consensus 190 ~n~~~~-------~--~~~~l~~-~~~~LkpgG~lils~~------~~~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 190 ANLYAE-------L--HAALAPR-YREALVPGGRALLTGI------LKDRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp EECCHH-------H--HHHHHHH-HHHHEEEEEEEEEEEE------EGGGHHHHHHHHHHTTCEEE
T ss_pred ECCcHH-------H--HHHHHHH-HHHHcCCCCEEEEEee------ccCCHHHHHHHHHHCCCEEE
Confidence 975421 1 2478888 7999999999988642 122345666777765 5543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=109.81 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=101.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-------CCC-----cEEEEEECCH---HH-----------HHHHHhhhhh-cc---
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-------KTV-----EKVVMCDIDE---EV-----------VEFCKSYLVV-NK--- 150 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-------~~~-----~~v~~VEid~---~v-----------i~~a~~~f~~-~~--- 150 (297)
.++.+||+||+|+|..+..+++. .|. .+++++|.+| +. .+.|++.+.. +.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999988776542 332 5899999997 33 3355554431 00
Q ss_pred ----CCCCC--CCeEEEEcchHHHHhccCC----CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 151 ----EAFSD--PRLELVINDARAELESRKE----SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 151 ----~~~~~--~rv~~~~~Da~~~l~~~~~----~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.+ .+++++.+|+++.+..... +||+|++|++.|.. . ..+++.++|+. +.++|+|||+|++.+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~-~--p~lw~~~~l~~-l~~~L~pGG~l~tysa 214 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAK-N--PDMWTQNLFNA-MARLARPGGTLATFTS 214 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTT-C--GGGCCHHHHHH-HHHHEEEEEEEEESCC
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCccc-C--hhhcCHHHHHH-HHHHcCCCcEEEEEeC
Confidence 00222 3578999999998876433 79999999987652 2 37899999999 8999999999997542
Q ss_pred CCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEEecCCC
Q 022451 221 PAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMVSIYNP 269 (297)
Q Consensus 221 ~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~as~~~~ 269 (297)
. ..+.+.|.+. |. + ..+|.++.....+.+.+.+.
T Consensus 215 -------a---~~vrr~L~~aGF~-v----~~~~g~~~kr~m~~a~~~~~ 249 (257)
T 2qy6_A 215 -------A---GFVRRGLQEAGFT-M----QKRKGFGRKREMLCGVMEQT 249 (257)
T ss_dssp -------B---HHHHHHHHHHTEE-E----EEECCSTTCCCEEEEEEC--
T ss_pred -------C---HHHHHHHHHCCCE-E----EeCCCCCCCCceEEEEecCc
Confidence 1 2455666665 43 2 24566665566777776654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=110.11 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=95.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.|++++... +. -.++++++.+|+.+.. ...+.||
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~--~~~~v~~~~~d~~~~~-~~~~~~D 173 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADSE-LPDGSVD 173 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGCC-CCTTCEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCCcEEEEECchHhcC-CCCCcee
Confidence 356779999999999999999984 45679999999999999999987533 10 1268999999987652 2246799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh--hCCceeE
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ--VFKYVVP 247 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~--~F~~v~~ 247 (297)
+|+++.++++ ++++. +.+.|+|||.+++... ..+....+...+++ .|.....
T Consensus 174 ~v~~~~~~~~-----------~~l~~-~~~~L~pgG~l~~~~~------~~~~~~~~~~~l~~~~~f~~~~~ 227 (280)
T 1i9g_A 174 RAVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYVA------TVTQLSRIVEALRAKQCWTEPRA 227 (280)
T ss_dssp EEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEES------SHHHHHHHHHHHHHHSSBCCCEE
T ss_pred EEEECCcCHH-----------HHHHH-HHHhCCCCCEEEEEeC------CHHHHHHHHHHHHhcCCcCCcEE
Confidence 9999876432 56777 7899999999998752 33456677777775 3554433
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=112.26 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-----CC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-----~~ 174 (297)
.++.+|||||||+|..+..+++.. +..+|++||+++.+++.|++.+.... ...++++++.+|+.+.-... .+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP--DTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc--CCCCceEEEEcCHHhCCccccccccCC
Confidence 578899999999999999999753 67899999999999999999876430 02478999999987643221 26
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++...-++ +--..+++. ++++|+|||.+++.
T Consensus 113 ~fD~V~~~~~l~~-------~~~~~~l~~-~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 113 KIDMITAVECAHW-------FDFEKFQRS-AYANLRKDGTIAIW 148 (299)
T ss_dssp CEEEEEEESCGGG-------SCHHHHHHH-HHHHEEEEEEEEEE
T ss_pred CeeEEeHhhHHHH-------hCHHHHHHH-HHHhcCCCcEEEEE
Confidence 8999999865332 123578998 89999999999874
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=112.94 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=87.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~ 178 (297)
.+++|||+|||+|.++..+++. ..+|++||+++.+++.|++++..++ -++++++.+|+.+++.. ...+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~----~~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCCceEEECCHHHHHHHHHhcCCCeeE
Confidence 6689999999999999999986 5799999999999999999987663 23499999999998754 2578999
Q ss_pred EEEcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|++|++.-.. .+ ..+ .-.+++.. +.+.|+|||++++.+.+.
T Consensus 283 Ii~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 283 VVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCC-Ch-hHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC
Confidence 9999873210 11 111 12357777 789999999999887654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=112.24 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++..+..+|++||+++.+++.|++.+.... -++++++.+|+.... ...++||+|+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~ 110 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG----IKNVKFLQANIFSLP-FEDSSFDHIF 110 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGCC-SCTTCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEEEEcccccCC-CCCCCeeEEE
Confidence 56789999999999999999988777899999999999999999876542 257999999987642 3457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-..... ...+++. +++.|+|||++++..
T Consensus 111 ~~~~l~~~~~------~~~~l~~-~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 111 VCFVLEHLQS------PEEALKS-LKKVLKPGGTITVIE 142 (276)
T ss_dssp EESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EechhhhcCC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence 9765322111 2378888 899999999998864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-11 Score=111.25 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=84.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||+|||+|..+..+++. + .+|++||+|+.+++.|++++..++. ..++..+|+.+++....++||+|+
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~-g-a~V~avDis~~al~~a~~n~~~ng~-----~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK-G-AYALAVDKDLEALGVLDQAALRLGL-----RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred cCCCeEEEcccchhHHHHHHHHc-C-CeEEEEECCHHHHHHHHHHHHHhCC-----CCcEEEccHHHHHHHhcCCCCEEE
Confidence 34789999999999999999986 3 4499999999999999999876641 135779999999876444599999
Q ss_pred EcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 181 GDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++.-.. .. ..+ ...++++. +.+.|+|||+|++.++++
T Consensus 286 ~dpP~f~~-~~-~~~~~~~~~~~~ll~~-a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 286 LDPPTLVK-RP-EELPAMKRHLVDLVRE-ALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ECCCCCCS-SG-GGHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred ECCCcCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC
Confidence 99863110 11 111 11367777 689999999998776554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=105.56 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=81.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|..+..+++. ..+|+++|+++.+++.|++++...+ -++++++.+|+.+.... .++||+|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLD----LHNVSTRHGDGWQGWQA-RAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcC----CCceEEEECCcccCCcc-CCCccEE
Confidence 456789999999999999999987 4799999999999999999887542 25799999999875543 4789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+++...+. .+ . . +.+.|+|||.+++...
T Consensus 148 ~~~~~~~~--~~-----~-----~-~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 148 IVTAAPPE--IP-----T-----A-LMTQLDEGGILVLPVG 175 (210)
T ss_dssp EESSBCSS--CC-----T-----H-HHHTEEEEEEEEEEEC
T ss_pred EEccchhh--hh-----H-----H-HHHhcccCcEEEEEEc
Confidence 99865332 11 1 3 5789999999999864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-11 Score=111.53 Aligned_cols=118 Identities=23% Similarity=0.217 Sum_probs=89.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++|||+|||+|.++..+++.. ..+|++||+++.+++.|++++..++ +.+++++++.+|+.+++.. ...+||
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD 295 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCC
Confidence 467899999999999999999863 5799999999999999999987653 1023899999999998754 246899
Q ss_pred EEEEcCCCCCCC--CCcc-CcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEG--GPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~--~p~~-~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|++..... .... .-.-.+++.. +.+.|+|||++++.+++.
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINML-AIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence 999998732100 0000 0112467777 689999999999887654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-12 Score=111.31 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=82.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++. .++++++.+|+.++. .+++||+|+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---------~~~~~~~~~d~~~~~--~~~~fD~v~ 100 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---------LPNTNFGKADLATWK--PAQKADLLY 100 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---------STTSEEEECCTTTCC--CSSCEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------CCCcEEEECChhhcC--ccCCcCEEE
Confidence 567899999999999999999875667999999999999999986 157899999987653 457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++. + --..+++. +.+.|+|||.+++..
T Consensus 101 ~~~~l~~~--~----~~~~~l~~-~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 101 ANAVFQWV--P----DHLAVLSQ-LMDQLESGGVLAVQM 132 (259)
T ss_dssp EESCGGGS--T----THHHHHHH-HGGGEEEEEEEEEEE
T ss_pred EeCchhhC--C----CHHHHHHH-HHHhcCCCeEEEEEe
Confidence 97653321 1 12478888 899999999999875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=103.57 Aligned_cols=102 Identities=17% Similarity=0.066 Sum_probs=80.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++. ..+++++|+++.+++.|++.+. ++++++.+|+.++. .. ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~~-~~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSFE-VP-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSCC-CC-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhcC-CC-CCeEEEE
Confidence 46789999999999999999986 4699999999999999998753 47889999987643 22 7899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ ......+++. +++.|+|||.+++..
T Consensus 112 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 112 STYAFHH--LT--DDEKNVAIAK-YSQLLNKGGKIVFAD 145 (220)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred ECcchhc--CC--hHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 9854222 11 1111348888 799999999999874
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=100.95 Aligned_cols=144 Identities=18% Similarity=0.261 Sum_probs=94.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-----h--cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-----E--SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-----~--~~ 172 (297)
.++.+|||+|||+|.++..+++. .+..+++++|+++ +++. ++++++.+|+.+.- . ..
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------VGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------CcEEEEEcccccchhhhhhhccCC
Confidence 56779999999999999999986 3457999999999 6421 57899999987641 1 23
Q ss_pred CCCceEEEEcCCCCCCCCCcc-Cc----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGPCY-KL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~-~L----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
+++||+|+++.+-+....+.. .. ....+++. +.+.|+|||.+++.... ......+.+.+++.|..+..
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~~~~~~~ 158 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEM-CRDVLAPGGSFVVKVFQ------GEGFDEYLREIRSLFTKVKV 158 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEES------STTHHHHHHHHHHHEEEEEE
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHH-HHHHcCCCcEEEEEEec------CCcHHHHHHHHHHhhhhEEe
Confidence 468999999876433111100 00 01478888 79999999999886421 22345666777777776654
Q ss_pred EEEecCccCCceeEEEEec
Q 022451 248 YSAHIPSFADTWGWIMVSI 266 (297)
Q Consensus 248 ~~~~vp~~~~~~~~~~as~ 266 (297)
...........-.+++|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~ 177 (180)
T 1ej0_A 159 RKPDSSRARSREVYIVATG 177 (180)
T ss_dssp ECCTTSCTTCCEEEEEEEE
T ss_pred ecCCcccccCceEEEEEcc
Confidence 4321111122345566653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=112.53 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=85.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++.+... .++++++.+|+.++. ..++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~ 92 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEIE--LNDKYDI 92 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-----SSEEEEEESCTTTCC--CSSCEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEcchhhcC--cCCCeeE
Confidence 35789999999999999999998755 479999999999999999987643 248999999998643 2468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.. .+ -...+++. +++.|+|||.+++..
T Consensus 93 v~~~~~l~~--~~----~~~~~l~~-~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 93 AICHAFLLH--MT----TPETMLQK-MIHSVKKGGKIICFE 126 (284)
T ss_dssp EEEESCGGG--CS----SHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEECChhhc--CC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence 999865322 11 12478898 799999999998764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-12 Score=111.45 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=78.6
Q ss_pred CCCeEEEEccchhHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccC-C
Q 022451 102 NPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-E 174 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~-~ 174 (297)
++.+||+||||+|.++..+++. .+..+|++||+++.+++.|+. . .++++++.+|+.+. +.... .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~------~~~v~~~~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D------MENITLHQGDCSDLTTFEHLREM 151 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G------CTTEEEEECCSSCSGGGGGGSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c------CCceEEEECcchhHHHHHhhccC
Confidence 4689999999999999998876 567899999999999988872 1 26899999999875 43323 3
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
+||+|++|.... ....+++. +.+ +|+|||+|++..
T Consensus 152 ~fD~I~~d~~~~---------~~~~~l~~-~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 152 AHPLIFIDNAHA---------NTFNIMKW-AVDHLLEEGDYFIIED 187 (236)
T ss_dssp CSSEEEEESSCS---------SHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred CCCEEEECCchH---------hHHHHHHH-HHHhhCCCCCEEEEEe
Confidence 799999987521 12467888 686 999999999863
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=109.56 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=79.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-------c-CC-----CCCCCeEEEEcchHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-------K-EA-----FSDPRLELVINDARA 167 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-------~-~~-----~~~~rv~~~~~Da~~ 167 (297)
.++.+|||+|||+|..+..+++. ..+|++||+++.+++.|++..... . .. -..++++++++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999986 358999999999999998754310 0 00 013689999999987
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
.-....++||+|+....-.. .+. . ....+++. +.++|+|||++++
T Consensus 145 l~~~~~~~FD~V~~~~~l~~--l~~-~-~~~~~l~~-~~~~LkpGG~l~l 189 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVA--INP-G-DHDRYADI-ILSLLRKEFQYLV 189 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTT--SCG-G-GHHHHHHH-HHHTEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhh--CCH-H-HHHHHHHH-HHHHcCCCeEEEE
Confidence 54322378999997643221 121 1 13468888 8999999999853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=112.59 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=82.4
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA----------------------------- 152 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~----------------------------- 152 (297)
.+++|||||||+|.++..+++..+..+|++||+|+.+++.|++++......
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999877789999999999999999986422100
Q ss_pred -------------------------CCCCCeEEEEcchHHH----HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 153 -------------------------FSDPRLELVINDARAE----LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 153 -------------------------~~~~rv~~~~~Da~~~----l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
--..+++++.+|.... +....++||+|++.....+.......---..+++.
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0014899999997532 22245789999987542110000000022468888
Q ss_pred HHcccCCCCcEEEEec
Q 022451 204 VVKPRLNPEGIFVTQA 219 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~ 219 (297)
+.++|+|||+|++..
T Consensus 206 -~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 -IYRHLRPGGILVLEP 220 (292)
T ss_dssp -HHHHEEEEEEEEEEC
T ss_pred -HHHHhCCCcEEEEec
Confidence 799999999999874
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=104.93 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=83.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+...+ -++++++.+|+.. +...+++||+
T Consensus 18 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~-~~~~~~~fD~ 90 (239)
T 1xxl_A 18 ECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAES-LPFPDDSFDI 90 (239)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTB-CCSCTTCEEE
T ss_pred CcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEeccccc-CCCCCCcEEE
Confidence 34678899999999999999999864 489999999999999999876442 2579999999865 3334578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.. .+ . -..+++. +++.|+|||.+++..
T Consensus 91 v~~~~~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 91 ITCRYAAHH--FS--D--VRKAVRE-VARVLKQDGRFLLVD 124 (239)
T ss_dssp EEEESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEECCchhh--cc--C--HHHHHHH-HHHHcCCCcEEEEEE
Confidence 999854222 11 1 2478888 799999999998754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-12 Score=108.28 Aligned_cols=108 Identities=11% Similarity=0.027 Sum_probs=77.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC--------CCCCCCeEEEEcchHHHHhc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~--------~~~~~rv~~~~~Da~~~l~~ 171 (297)
.+++.+|||+|||+|..+..+++. ..+|++||+++.|++.|++....... .+..++++++++|+.+.-..
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 357789999999999999999986 35899999999999999987542100 00136899999998764321
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcE
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGv 214 (297)
..++||+|++...-.. .+. -....+++. ++++|+|||.
T Consensus 98 ~~~~fD~v~~~~~l~~--l~~--~~~~~~l~~-~~r~LkpgG~ 135 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIA--LPA--DMRERYVQH-LEALMPQACS 135 (203)
T ss_dssp HHHSEEEEEEESCGGG--SCH--HHHHHHHHH-HHHHSCSEEE
T ss_pred cCCCEEEEEECcchhh--CCH--HHHHHHHHH-HHHHcCCCcE
Confidence 1157999997543211 110 012357888 8999999997
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-11 Score=103.28 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=103.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~y 176 (297)
..++.+||+||||+|.++..+++. .+..+|++||+++++++.+++.... .+++..+.+|+...-. .....+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~------~~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD------RRNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT------CTTEEEEESCTTCGGGGTTTCCCE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh------hcCeeEEEEeccCccccccccceE
Confidence 467789999999999999999985 5678999999999999999886532 3689999999865432 234789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC---CcCCchHHHHHHHHHHhh-CCceeEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQV-FKYVVPYSAHI 252 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~---~~~~~~~~~~i~~~l~~~-F~~v~~~~~~v 252 (297)
|+|++|.+.|. . ...++.. +++.|||||.+++...... .......+++..+.|++. |.-+.. ..+
T Consensus 149 DvVf~d~~~~~--~------~~~~l~~-~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~--i~L 217 (233)
T 4df3_A 149 DGLYADVAQPE--Q------AAIVVRN-ARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV--VHL 217 (233)
T ss_dssp EEEEECCCCTT--H------HHHHHHH-HHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE--EEC
T ss_pred EEEEEeccCCh--h------HHHHHHH-HHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE--Ecc
Confidence 99999987543 1 2467888 7999999999887531100 001234566677777765 654432 234
Q ss_pred CccCCceeEEEE
Q 022451 253 PSFADTWGWIMV 264 (297)
Q Consensus 253 p~~~~~~~~~~a 264 (297)
..|......+++
T Consensus 218 ~pf~~~H~lv~~ 229 (233)
T 4df3_A 218 DPFDRDHAMIYA 229 (233)
T ss_dssp TTTSTTEEEEEE
T ss_pred CCCCCceEEEEE
Confidence 445433444444
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-11 Score=102.44 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=98.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++.+ +++++.+|+...- ..++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~d~~~~~--~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL----------GRPVRTMLFHQLD--AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH----------TSCCEECCGGGCC--CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc----------CCceEEeeeccCC--CCCcEEEEE
Confidence 56789999999999999999986 458999999999999999875 3567788876543 567899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--------CCchHHHHHHHHHHhh--CCceeEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--------SHTEVFSCIYNTLRQV--FKYVVPYSA 250 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--------~~~~~~~~i~~~l~~~--F~~v~~~~~ 250 (297)
+...-.. .+. -.-..+++. +++.|+|||++++........ ...-....+.+.+++. |..+.....
T Consensus 108 ~~~~l~~--~~~--~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 108 AHACLLH--VPR--DELADVLKL-IWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp ECSCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred ecCchhh--cCH--HHHHHHHHH-HHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 8754211 110 012368888 799999999998875321100 0011345566666665 676655443
Q ss_pred ecCccC---CceeEEEEecCCC
Q 022451 251 HIPSFA---DTWGWIMVSIYNP 269 (297)
Q Consensus 251 ~vp~~~---~~~~~~~as~~~~ 269 (297)
....+. ..|.+++..+.+.
T Consensus 183 ~~~~~~~~~~~wl~~~~~~~~~ 204 (211)
T 3e23_A 183 EGKGFDQELAQFLHVSVRKPEL 204 (211)
T ss_dssp EEECTTSCEEEEEEEEEECCCC
T ss_pred cCCCCCCCCceEEEEEEecCcc
Confidence 333332 2354454444443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=107.70 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+. ++++++.+|+.+. ..+++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~--------~~v~~~~~d~~~~--~~~~~fD~v~ 108 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDA--QLPRRYDNIV 108 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGC--CCSSCEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh--------CCeEEEEccHHHc--CcCCcccEEE
Confidence 467899999999999999999864 379999999999999998752 1799999998876 2457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHc-ccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~-~~L~pgGvl~~~~ 219 (297)
+...-.. .+ . ...+++. ++ ++|+|||.+++..
T Consensus 109 ~~~~l~~--~~--~--~~~~l~~-~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 109 LTHVLEH--ID--D--PVALLKR-INDDWLAEGGRLFLVC 141 (250)
T ss_dssp EESCGGG--CS--S--HHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred EhhHHHh--hc--C--HHHHHHH-HHHHhcCCCCEEEEEc
Confidence 8754222 11 1 2478999 89 9999999998875
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.8e-11 Score=114.43 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=97.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.+++++...+ -. ++++.+|+..+.....++||
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G----~~-v~~~~~Da~~l~~~~~~~FD 172 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG----AP-LAVTQAPPRALAEAFGTYFH 172 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC----CC-CEEECSCHHHHHHHHCSCEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----Ce-EEEEECCHHHhhhhccccCC
Confidence 345678999999999999999997643 4699999999999999999987543 24 89999999987643467899
Q ss_pred EEEEcCCCCC----CCCCccCcc-------------cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 178 VIIGDLADPI----EGGPCYKLY-------------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 178 ~Ii~D~~~~~----~~~p~~~L~-------------t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+|++|++-.. ...| ...+ ..++++. +.+.|+|||+|+..+++. ..+..+.++..+.+
T Consensus 173 ~Il~D~PcSg~G~~rr~p-d~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvysTCs~----~~eEne~vv~~~l~ 246 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDR-EAARHWGPSAPKRMAEVQKALLAQ-ASRLLGPGGVLVYSTCTF----APEENEGVVAHFLK 246 (464)
T ss_dssp EEEEECCCCCGGGTTTCT-TSGGGCCTTHHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESCC----CGGGTHHHHHHHHH
T ss_pred EEEECCCcCCccccccCh-HHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeccC----chhcCHHHHHHHHH
Confidence 9999987211 0112 1111 1678888 789999999999877643 22223444555444
Q ss_pred hCCc
Q 022451 241 VFKY 244 (297)
Q Consensus 241 ~F~~ 244 (297)
.+++
T Consensus 247 ~~~~ 250 (464)
T 3m6w_A 247 AHPE 250 (464)
T ss_dssp HCTT
T ss_pred HCCC
Confidence 5554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=107.69 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=84.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+...+ ..++++++.+|+.+. ...+++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG---LANRVTFSYADAMDL-PFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEECccccC-CCCCCCccEE
Confidence 3567899999999999999998865 4799999999999999999876432 135899999998663 2335789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ . ...+++. +++.|+|||.+++..
T Consensus 134 ~~~~~l~~--~~--~--~~~~l~~-~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 134 WALESLHH--MP--D--RGRALRE-MARVLRPGGTVAIAD 166 (273)
T ss_dssp EEESCTTT--SS--C--HHHHHHH-HHTTEEEEEEEEEEE
T ss_pred EEechhhh--CC--C--HHHHHHH-HHHHcCCCeEEEEEE
Confidence 98654322 11 1 2578898 899999999998765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=101.77 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=82.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+||+||||+|..+..+++. ..+++++|+++.+++.|++.+.... .++++++.+|+.+.- . .++||+|
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~-~~~~D~v 101 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIEN----LDNLHTRVVDLNNLT-F-DRQYDFI 101 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEECCGGGCC-C-CCCEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCC----CCCcEEEEcchhhCC-C-CCCceEE
Confidence 346789999999999999999986 4599999999999999999876442 257999999987643 2 5789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...-.. .+.. ....+++. +.+.|+|||.+++.
T Consensus 102 ~~~~~l~~--~~~~--~~~~~l~~-~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 102 LSTVVLMF--LEAK--TIPGLIAN-MQRCTKPGGYNLIV 135 (199)
T ss_dssp EEESCGGG--SCGG--GHHHHHHH-HHHTEEEEEEEEEE
T ss_pred EEcchhhh--CCHH--HHHHHHHH-HHHhcCCCeEEEEE
Confidence 98864222 1101 13578888 79999999997654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=112.34 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=88.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++|||+|||+|.++..+++. +..+|++||+++.+++.|++++..++. +++++++.+|+.+++.. ...+||
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~---~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV---EDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC---GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEECCHHHHHHHHHhhCCCCC
Confidence 36789999999999999999986 467999999999999999999876531 23899999999988753 256899
Q ss_pred EEEEcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|++.-.. .. ..+ ...+++.. +.+.|+|||++++.++++
T Consensus 292 ~Vi~dpP~~~~-~~-~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 292 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCC-CH-HHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEECCC
Confidence 99999863210 11 111 12357777 789999999998876554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=102.83 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~y 176 (297)
..++.+|||+|||+|..+..+++. .+..+|++||+++.+++...+.... .+++.++.+|++.... ...++|
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------r~nv~~i~~Da~~~~~~~~~~~~~ 147 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------RPNIFPLLADARFPQSYKSVVENV 147 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------CTTEEEEECCTTCGGGTTTTCCCE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCeEEEEcccccchhhhccccce
Confidence 356789999999999999988875 3467999999999886443322111 2579999999875321 124689
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCC---CcCCchHHHHHHHHHHhh-CCceeEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAG---IFSHTEVFSCIYNTLRQV-FKYVVPYSAHI 252 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~---~~~~~~~~~~i~~~l~~~-F~~v~~~~~~v 252 (297)
|+|++|.+.+. ....+... +++.|+|||.|++...+++ .....+.+......+++. |.-+. ...+
T Consensus 148 D~I~~d~a~~~--------~~~il~~~-~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~--~~~l 216 (232)
T 3id6_C 148 DVLYVDIAQPD--------QTDIAIYN-AKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQ--IINL 216 (232)
T ss_dssp EEEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEE--EEEC
T ss_pred EEEEecCCChh--------HHHHHHHH-HHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEE--Eecc
Confidence 99999976432 11223444 5669999999987642221 011223345566666654 43322 1344
Q ss_pred CccCCceeEEEEec
Q 022451 253 PSFADTWGWIMVSI 266 (297)
Q Consensus 253 p~~~~~~~~~~as~ 266 (297)
.+|.....++++.+
T Consensus 217 ~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 217 DPYDKDHAIVLSKY 230 (232)
T ss_dssp TTTCSSCEEEEEEE
T ss_pred CCCcCceEEEEEEe
Confidence 44544455565554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=107.95 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=82.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+. .++++++.+|+... ....++||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~-~~~~~~fD~v~ 113 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDI-AIEPDAYNVVL 113 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGC-CCCTTCEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhC-CCCCCCeEEEE
Confidence 367899999999999999999874 3499999999999999998764 36899999998653 33457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-... + .-..+++. +++.|+|||.+++..
T Consensus 114 ~~~~l~~~--~----~~~~~l~~-~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 114 SSLALHYI--A----SFDDICKK-VYINLKSSGSFIFSV 145 (253)
T ss_dssp EESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Echhhhhh--h----hHHHHHHH-HHHHcCCCcEEEEEe
Confidence 97642221 1 12478888 799999999999864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-11 Score=108.11 Aligned_cols=117 Identities=15% Similarity=0.055 Sum_probs=87.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+ -++++++.+|+..+.. ..++||
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g----~~~v~~~~~D~~~~~~-~~~~fD 189 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHIGE-LNVEFD 189 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGGGG-GCCCEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCeEEEEECChhhccc-ccccCC
Confidence 34567899999999999999999764 34799999999999999999886542 2479999999987643 356899
Q ss_pred EEEEcCCCC-C---CCCCcc-Ccc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 022451 178 VIIGDLADP-I---EGGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 178 ~Ii~D~~~~-~---~~~p~~-~L~-----------t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++|++-. . ...|.. ..+ ..++++. +.+.|+|||.+++.+++
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~-~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHH-HHHhCCCCCEEEEEeCC
Confidence 999997621 1 001100 001 1478888 78999999999987654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=102.97 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=80.0
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+.+|||||||+|.++..+++. ..++++||+++.+++.|++.+ ++++++.+|+.+. ....++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH---------PSVTFHHGTITDL-SDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC---------TTSEEECCCGGGG-GGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC---------CCCeEEeCccccc-ccCCCCeEEEEeh
Confidence 789999999999999999986 358999999999999999862 5789999998774 3345789999997
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..-.. .+.. .-..+++. +.++|+|||.+++..
T Consensus 110 ~~l~~--~~~~--~~~~~l~~-~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 110 YSLIH--MGPG--ELPDALVA-LRMAVEDGGGLLMSF 141 (203)
T ss_dssp SSSTT--CCTT--THHHHHHH-HHHTEEEEEEEEEEE
T ss_pred hhHhc--CCHH--HHHHHHHH-HHHHcCCCcEEEEEE
Confidence 54222 1101 12478888 799999999998875
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=103.10 Aligned_cols=142 Identities=14% Similarity=0.135 Sum_probs=92.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hhc-c--
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LES-R-- 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-----l~~-~-- 172 (297)
.++.+|||||||+|.++..+++. ..+|++||++|.. ..++++++.+|+.+. +.. .
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------------~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------------EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 56789999999999999999986 5799999999741 126899999997542 111 0
Q ss_pred --CCCceEEEEcCCCCCCCCCc-cCc----ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 173 --KESYDVIIGDLADPIEGGPC-YKL----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 173 --~~~yD~Ii~D~~~~~~~~p~-~~L----~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
.++||+|++|.+........ ... .-...++. +.+.|+|||.|++..- ..+....+...+++.|..|
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~-a~~~LkpGG~lv~k~~------~~~~~~~~~~~l~~~F~~v 159 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEI-AVRYLRNGGNVLLKQF------QGDMTNDFIAIWRKNFSSY 159 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEE------CSTHHHHHHHHHGGGEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------CCCCHHHHHHHHHHhcCEE
Confidence 14899999998532211100 000 01345666 6899999999998752 2234567888899899988
Q ss_pred eEEEEecCccC-CceeEEEEecC
Q 022451 246 VPYSAHIPSFA-DTWGWIMVSIY 267 (297)
Q Consensus 246 ~~~~~~vp~~~-~~~~~~~as~~ 267 (297)
..+. +..+.. ..-.|++|...
T Consensus 160 ~~~k-P~asR~~s~E~y~v~~~~ 181 (191)
T 3dou_A 160 KISK-PPASRGSSSEIYIMFFGF 181 (191)
T ss_dssp EEEC-C------CCEEEEEEEEE
T ss_pred EEEC-CCCccCCCceEEEEEeee
Confidence 7553 222222 22356666543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-12 Score=109.73 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=82.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.|++.+... ++++++.+|+.+. ....++||+|+
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~ 125 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN------NKIIFEANDILTK-EFPENNFDLIY 125 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC------TTEEEEECCTTTC-CCCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC------CCeEEEECccccC-CCCCCcEEEEe
Confidence 467899999999999999999864 469999999999999999876422 6899999998764 33457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ .-.-..+++. +++.|+|||.+++..
T Consensus 126 ~~~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 126 SRDAILA--LS--LENKNKLFQK-CYKWLKPTGTLLITD 159 (266)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred HHHHHHh--cC--hHHHHHHHHH-HHHHcCCCCEEEEEE
Confidence 9754222 11 0122468888 799999999998875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=103.42 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++. ..++++++.+|+.++ ...++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~~d~~~~--~~~~~~D~v 111 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH--------GLDNVEFRQQDLFDW--TPDRQWDAV 111 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG--------CCTTEEEEECCTTSC--CCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc--------CCCCeEEEecccccC--CCCCceeEE
Confidence 355679999999999999999987 46999999999999999981 136799999999876 346789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+. .+. . ....+++. +++.|+|||.+++..
T Consensus 112 ~~~~~l~~--~~~-~-~~~~~l~~-~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 112 FFAHWLAH--VPD-D-RFEAFWES-VRSAVAPGGVVEFVD 146 (218)
T ss_dssp EEESCGGG--SCH-H-HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEechhhc--CCH-H-HHHHHHHH-HHHHcCCCeEEEEEe
Confidence 99754221 110 0 01578888 799999999998875
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=105.37 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=92.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|+++...++ -..+++++.+|+.+.+.. .++||+|+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~i~~~~~d~l~~l~~-~~~~D~Iv 89 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG---LKEKIQVRLANGLAAFEE-TDQVSVIT 89 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEECchhhhccc-CcCCCEEE
Confidence 56679999999999999999998777899999999999999999987654 135899999999776643 23699988
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.- ....+ -.+++.. +.+.|+++|.|+++.. .. ...+.+.|.+.
T Consensus 90 iaG-------~Gg~~-i~~Il~~-~~~~L~~~~~lVlq~~-----~~---~~~vr~~L~~~ 133 (225)
T 3kr9_A 90 IAG-------MGGRL-IARILEE-GLGKLANVERLILQPN-----NR---EDDLRIWLQDH 133 (225)
T ss_dssp EEE-------ECHHH-HHHHHHH-TGGGCTTCCEEEEEES-----SC---HHHHHHHHHHT
T ss_pred EcC-------CChHH-HHHHHHH-HHHHhCCCCEEEEECC-----CC---HHHHHHHHHHC
Confidence 741 11122 3478888 7999999999999842 12 34555666654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=107.06 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~yD 177 (297)
.+..+|||+|||+|.++..+++.. +..+|++||+++.+++.+.+..... ++++++.+|+.+. +....++||
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------CCeEEEEcccCChhhhcccCCcEE
Confidence 456799999999999999999863 4579999999998877666654322 6799999999774 233457899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|.+.+. ....+++. +.+.|+|||++++.+
T Consensus 150 ~V~~~~~~~~--------~~~~~~~~-~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 150 VIFADVAQPD--------QTRIVALN-AHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEECCCCTT--------HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEEcCCCcc--------HHHHHHHH-HHHHcCCCeEEEEEE
Confidence 9999876321 12356777 789999999998864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=106.24 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=79.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++.+ ++++++.+|+.++-. .++||+|
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v 114 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN---------PDAVLHHGDMRDFSL--GRRFSAV 114 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTCCC--SCCEEEE
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC---------CCCEEEECChHHCCc--cCCcCEE
Confidence 3567899999999999999999863 58999999999999999864 378999999877432 5789999
Q ss_pred EEcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++.. .-.. .+ ..-....+++. +.+.|+|||++++.
T Consensus 115 ~~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 115 TCMFSSIGH--LA-GQAELDAALER-FAAHVLPDGVVVVE 150 (263)
T ss_dssp EECTTGGGG--SC-HHHHHHHHHHH-HHHTEEEEEEEEEC
T ss_pred EEcCchhhh--cC-CHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence 9874 2111 00 00012367888 79999999999986
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=112.47 Aligned_cols=111 Identities=17% Similarity=0.103 Sum_probs=84.0
Q ss_pred CCCCCeEEEEccchhHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+++.+|||||||+|..+..++ ...+..+|+++|+++.+++.|++++...+ ..++++++.+|+.+.. . .++||+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~-~-~~~fD~ 190 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA---LAGQITLHRQDAWKLD-T-REGYDL 190 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEECCGGGCC-C-CSCEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECchhcCC-c-cCCeEE
Confidence 3677899999999999999985 34567899999999999999999876432 1357999999988742 2 378999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-.. .+ ..-....+++. +++.|+|||++++..
T Consensus 191 v~~~~~~~~--~~-~~~~~~~~l~~-~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 191 LTSNGLNIY--EP-DDARVTELYRR-FWQALKPGGALVTSF 227 (305)
T ss_dssp EECCSSGGG--CC-CHHHHHHHHHH-HHHHEEEEEEEEEEC
T ss_pred EEECChhhh--cC-CHHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence 998654221 11 01112247898 799999999999875
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=107.78 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=81.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.... ..+++++.+|+..+. ...++||+|++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC----CceEEEEEcChhhcC-CCCCCEEEEEE
Confidence 57899999999999999988764 5699999999999999999876431 257899999976643 23458999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..-.. .+... ...+++. +.+.|+|||++++..
T Consensus 153 ~~~l~~--~~~~~--~~~~l~~-~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 153 QWVIGH--LTDQH--LAEFLRR-CKGSLRPNGIIVIKD 185 (241)
T ss_dssp ESCGGG--SCHHH--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred cchhhh--CCHHH--HHHHHHH-HHHhcCCCeEEEEEE
Confidence 854221 11000 1368888 799999999998853
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=105.57 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=92.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++.+|||||||+|..+..+++. ..+|+++|+++.+++.|++.+.... ...+++++.+|+.++. ..++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSP---KAEYFSFVKEDVFTWR--PTELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSG---GGGGEEEECCCTTTCC--CSSCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccC---CCcceEEEECchhcCC--CCCCeeEEEE
Confidence 4569999999999999998773 5789999999999999999875321 1357999999987753 3458999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC----CchHHHHHHHHHHhh-CCcee
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS----HTEVFSCIYNTLRQV-FKYVV 246 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~----~~~~~~~i~~~l~~~-F~~v~ 246 (297)
...-.. .+ .-....+++. +++.|+|||.+++...+..... ..-....+.+.+++. |..+.
T Consensus 139 ~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 139 YVFFCA--IE--PEMRPAWAKS-MYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp ESSTTT--SC--GGGHHHHHHH-HHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred Chhhhc--CC--HHHHHHHHHH-HHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 754322 11 1123478888 7999999999987542111000 011234556666665 65444
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=107.51 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++.+...+ ..++++++.+|+.++ .++||+|+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~----~~~fD~v~ 134 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDRIV 134 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSEEE
T ss_pred CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCCeEEEECChhhC----CCCeeEEE
Confidence 5678999999999999999985443 499999999999999999876432 236899999998653 27899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ .-.-..+++. +.+.|+|||.+++..
T Consensus 135 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 135 SIGAFEH--FG--HERYDAFFSL-AHRLLPADGVMLLHT 168 (287)
T ss_dssp EESCGGG--TC--TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred EeCchhh--cC--hHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 8753211 11 0112478898 799999999998875
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=107.80 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=82.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++. ..+|++||+++.+++.|++.+...+ .+++++.+|+.+... .++||+|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~~--~~~fD~i~ 189 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKEN-----LNISTALYDINAANI--QENYDFIV 189 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCGGGCCC--CSCEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcC-----CceEEEEeccccccc--cCCccEEE
Confidence 36789999999999999999986 3599999999999999999876542 289999999876532 67899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...-.. .+ .-....+++. ++++|+|||++++.
T Consensus 190 ~~~~~~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 190 STVVFMF--LN--RERVPSIIKN-MKEHTNVGGYNLIV 222 (286)
T ss_dssp ECSSGGG--SC--GGGHHHHHHH-HHHTEEEEEEEEEE
T ss_pred Eccchhh--CC--HHHHHHHHHH-HHHhcCCCcEEEEE
Confidence 9865322 11 1113478898 79999999997664
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=105.11 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
+++.+|||||||+|.++..+.+. ..+|+++|+++.+++.|++. ++++.+|+.+++.. .+++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEE
Confidence 56789999999999999998886 35799999999999999863 78899999888743 45789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
++...-.. .+.. .-..+++. +++.|+|||.+++...
T Consensus 106 ~~~~~l~~--~~~~--~~~~~l~~-~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 106 MISHFVEH--LDPE--RLFELLSL-CYSKMKYSSYIVIESP 141 (240)
T ss_dssp EEESCGGG--SCGG--GHHHHHHH-HHHHBCTTCCEEEEEE
T ss_pred EECCchhh--CCcH--HHHHHHHH-HHHHcCCCcEEEEEeC
Confidence 98754221 1100 12578999 7999999999998763
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-11 Score=113.06 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=88.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+|||+|+.+..+++. .+..+|+++|+|+..++.+++++...+ -.++.++.+|+..+.....++||
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g----~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG----VSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT----CSSEEEECCCHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhhhccccCC
Confidence 3456789999999999999988875 334799999999999999999987543 24699999999987654457899
Q ss_pred EEEEcCCC-CC---CCCCc-------cC-----cccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 178 VIIGDLAD-PI---EGGPC-------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 178 ~Ii~D~~~-~~---~~~p~-------~~-----L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++|++- .. ...|. .. -...++++. +.+.|+|||.|+..+++
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS-AIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHH-HHHTEEEEEEEEEEESC
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEEee
Confidence 99999872 11 00110 00 012367888 78999999999987764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=106.00 Aligned_cols=92 Identities=16% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~I 179 (297)
+++.+|||||||+|.++..+++. ..+|+++|+++.+++.|+++ .++++++.+|+.+.+... +++||+|
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN---------APHADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH---------CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---------CCCceEEEcchhhccCCcCCCCEEEE
Confidence 56789999999999999999987 46999999999999999986 257999999986555444 5789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
++.. .+. .+++. +.+.|+|||.++
T Consensus 116 ~~~~------~~~------~~l~~-~~~~LkpgG~l~ 139 (226)
T 3m33_A 116 VSRR------GPT------SVILR-LPELAAPDAHFL 139 (226)
T ss_dssp EEES------CCS------GGGGG-HHHHEEEEEEEE
T ss_pred EeCC------CHH------HHHHH-HHHHcCCCcEEE
Confidence 9972 121 34455 789999999998
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=110.59 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=86.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||+|||+|.++.+++... +..+|+++|+|+.+++.|++++...+ -++++++.+|+.++.. ..+.||+
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g----~~~i~~~~~D~~~~~~-~~~~~D~ 275 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG----LSWIRFLRADARHLPR-FFPEVDR 275 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT----CTTCEEEECCGGGGGG-TCCCCSE
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC----CCceEEEeCChhhCcc-ccCCCCE
Confidence 3567899999999999999999864 56899999999999999999987543 1389999999988643 3456999
Q ss_pred EEEcCCCCCCCCCccCc--ccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKL--YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L--~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++|++-.........+ .-.++++. +++.|+|||.+++.+
T Consensus 276 Ii~npPyg~r~~~~~~~~~~~~~~~~~-~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 276 ILANPPHGLRLGRKEGLFHLYWDFLRG-ALALLPPGGRVALLT 317 (354)
T ss_dssp EEECCCSCC----CHHHHHHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred EEECCCCcCccCCcccHHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 99998743211111111 11468888 799999999999875
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=114.05 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=85.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhcc----CCCCCCCeEEEEcchHHHH-----h
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNK----EAFSDPRLELVINDARAEL-----E 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~----~~~~~~rv~~~~~Da~~~l-----~ 170 (297)
.++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++.... ..+..++++++.+|+.+.. .
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999998863 56799999999999999999875321 0023478999999987652 2
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++||+|++...-.. .+ . ...+++. +++.|+|||.|++..
T Consensus 162 ~~~~~fD~V~~~~~l~~--~~--d--~~~~l~~-~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNL--ST--N--KLALFKE-IHRVLRDGGELYFSD 203 (383)
T ss_dssp CCTTCEEEEEEESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhc--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence 23568999999865332 11 1 2478898 899999999998864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-11 Score=101.38 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=91.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---------
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--------- 169 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l--------- 169 (297)
.+..+|||||||+|.++..+++..+ ..+|+++|+++.. ..++++++.+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------------~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------------PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------------CCCCceEEEccccchhhhhhccccc
Confidence 5667999999999999999998755 5899999999831 1256888888876532
Q ss_pred -------------h--ccCCCceEEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCCCCcCCch
Q 022451 170 -------------E--SRKESYDVIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE 229 (297)
Q Consensus 170 -------------~--~~~~~yD~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~ 229 (297)
. -...+||+|+++...++......... ...+++. +.+.|+|||.+++.... .+
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~------~~ 158 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHF-MEQYINIGGTYIVKMYL------GS 158 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEEC------ST
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHH-HHHHccCCCEEEEEEeC------CC
Confidence 0 12468999999875333110000000 1236777 78999999999886421 12
Q ss_pred HHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecC
Q 022451 230 VFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIY 267 (297)
Q Consensus 230 ~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~ 267 (297)
....+...+++.|..+..+..........-.|++|.+.
T Consensus 159 ~~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~ 196 (201)
T 2plw_A 159 QTNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKNF 196 (201)
T ss_dssp THHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHheEEEECCcccCCcCceEEEEEecC
Confidence 34566777777787665432111111122356666643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=102.26 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=82.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+||+||||+|.++..+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. ...+++||+|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~~D~s~~~~~~a~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~v~ 112 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAH------VPQLRWETMDVRKL-DFPSASFDVVL 112 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTT-CCCEEEEESCHHHHHHHHHHTTT------CTTCEEEECCTTSC-CSCSSCEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcC-CCcEEEEeCCHHHHHHHHHhccc------CCCcEEEEcchhcC-CCCCCcccEEE
Confidence 567899999999999999999864 34899999999999999998642 36899999998764 23356899999
Q ss_pred EcCCC---------CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLAD---------PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~---------~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...- ++.......-....+++. +.++|+|||.+++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSE-VSRVLVPGGRFISMT 159 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHH-HHHhCcCCCEEEEEe
Confidence 86431 110000000012578888 799999999999875
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=103.38 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=81.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|..+..+++. +..+++++|+++.+++.|++.+. .++++++.+|+.+.. ...++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~-~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGP-------DTGITYERADLDKLH-LPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC-------SSSEEEEECCGGGCC-CCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcc-------cCCceEEEcChhhcc-CCCCCceEEE
Confidence 46789999999999999999986 33499999999999999998753 247999999987642 2357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ --..+++. ++++|+|||.+++..
T Consensus 113 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 113 SSLALHY--VE----DVARLFRT-VHQALSPGGHFVFST 144 (243)
T ss_dssp EESCGGG--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Eeccccc--cc----hHHHHHHH-HHHhcCcCcEEEEEe
Confidence 8754221 11 12478888 799999999998864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-11 Score=102.92 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++.. ..++++++.+|+.+. ....++||+|+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~-~~~~~~fD~v~ 121 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG-------EGPDLSFIKGDLSSL-PFENEQFEAIM 121 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT-------CBTTEEEEECBTTBC-SSCTTCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc-------ccCCceEEEcchhcC-CCCCCCccEEE
Confidence 57789999999999999999986 458999999999999999874 236899999998764 23357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ -...+++. +.+.|+|||++++..
T Consensus 122 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 122 AINSLEW--TE----EPLRALNE-IKRVLKSDGYACIAI 153 (242)
T ss_dssp EESCTTS--SS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EcChHhh--cc----CHHHHHHH-HHHHhCCCeEEEEEE
Confidence 8755332 11 12378888 799999999998875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=105.18 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=82.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++.+. . ..++++++.+|+.+. ...+++||+|+
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~~~~d~~~~-~~~~~~fD~v~ 109 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIA-G----VDRKVQVVQADARAI-PLPDESVHGVI 109 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTT-T----SCTTEEEEESCTTSC-CSCTTCEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh-c----cCCceEEEEcccccC-CCCCCCeeEEE
Confidence 56789999999999999999986 4689999999999999999872 1 247899999998653 22356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-++ .+ -...+++. +.+.|+|||.+++..
T Consensus 110 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 110 VVHLWHL--VP----DWPKVLAE-AIRVLKPGGALLEGW 141 (263)
T ss_dssp EESCGGG--CT----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ECCchhh--cC----CHHHHHHH-HHHHCCCCcEEEEEe
Confidence 8754322 11 12478888 799999999998763
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-11 Score=106.19 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=80.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++ +..+|+++|+++.+++.|++.+ ++++++.+|+..+ . ..++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~-~~~~fD~v 121 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY---------PHLHFDVADARNF-R-VDKPLDAV 121 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---------TTSCEEECCTTTC-C-CSSCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC---------CCCEEEECChhhC-C-cCCCcCEE
Confidence 35678999999999999999998 4579999999999999999864 5688999998763 2 24689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
++...-.+. + --..+++. +++.|+|||.+++...
T Consensus 122 ~~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 122 FSNAMLHWV--K----EPEAAIAS-IHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEESCGGGC--S----CHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred EEcchhhhC--c----CHHHHHHH-HHHhcCCCcEEEEEec
Confidence 987643221 1 12478888 7999999999988753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=103.99 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++...+ -.++++++.+|+.++. ..++||+|+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~--~~~~~D~v~ 149 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYG---IADKIEFICGDFLLLA--SFLKADVVF 149 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT---CGGGEEEEESCHHHHG--GGCCCSEEE
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcC---CCcCeEEEECChHHhc--ccCCCCEEE
Confidence 367899999999999999999863 799999999999999999876542 1258999999998876 346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++++-.....+. ..+.. +++.|+|||++++.
T Consensus 150 ~~~~~~~~~~~~------~~~~~-~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 150 LSPPWGGPDYAT------AETFD-IRTMMSPDGFEIFR 180 (241)
T ss_dssp ECCCCSSGGGGG------SSSBC-TTTSCSSCHHHHHH
T ss_pred ECCCcCCcchhh------hHHHH-HHhhcCCcceeHHH
Confidence 997633211111 12234 68999999987654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-11 Score=99.62 Aligned_cols=97 Identities=18% Similarity=0.079 Sum_probs=78.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++. .++++++.+| +....++||+|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---------~~~v~~~~~d----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---------FDSVITLSDP----KEIPDNSVDFIL 80 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---------CTTSEEESSG----GGSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---------CCCcEEEeCC----CCCCCCceEEEE
Confidence 567799999999999999999865 4999999999999999986 2689999999 333457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ -...+++. +++.|+|||.+++..
T Consensus 81 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~~~~ 112 (170)
T 3i9f_A 81 FANSFHD--MD----DKQHVISE-VKRILKDDGRVIIID 112 (170)
T ss_dssp EESCSTT--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Eccchhc--cc----CHHHHHHH-HHHhcCCCCEEEEEE
Confidence 8765332 11 12478888 799999999998874
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-10 Score=108.27 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=87.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
...++.+|||+|||+|+.+..+++..+..+|+++|+++..++.+++++...+ -+++++.+|+..+... ..++||
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-----MKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-----CCCEEEECCTTCTHHHHTTCCEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-----CCeEEEeCchhhchhhcccCCCC
Confidence 3456789999999999999999987655799999999999999999886542 2478999998765432 246899
Q ss_pred EEEEcCCCCCC----CCCcc-------Cc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 178 VIIGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 178 ~Ii~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++|++-... ..|.. .+ ...++++. +.+.|+|||.++..+++
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~-a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCS 376 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESC
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECC
Confidence 99999862110 01100 00 11477888 79999999999987754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-10 Score=92.74 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++.. +|++||+|+.+++. .++++++.+|+.+.+. .++||+|+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------------~~~~~~~~~d~~~~~~--~~~fD~i~ 83 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------------HRGGNLVRADLLCSIN--QESVDVVV 83 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------------CSSSCEEECSTTTTBC--GGGCSEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------------ccCCeEEECChhhhcc--cCCCCEEE
Confidence 456799999999999999999864 99999999999987 1578999999877543 37899999
Q ss_pred EcCCCCCCCCC---ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 181 GDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 181 ~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
++++-.+...+ ....-..++++. +.+.| |||.+++.... ......+.+.+++. |..+..
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-pgG~l~~~~~~------~~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDR-FVDAV-TVGMLYLLVIE------ANRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHH-HHHHC-CSSEEEEEEEG------GGCHHHHHHHHHHTTCEEEEE
T ss_pred ECCCCccCCccccccCCcchHHHHHH-HHhhC-CCCEEEEEEec------CCCHHHHHHHHHHCCCcEEEE
Confidence 98763221110 000112357777 56777 99999886421 12335566666654 554433
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.2e-11 Score=108.52 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=83.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.|++++...+ -.++++++.+|+.+. ...+++||+|+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~ 190 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELR---IDDHVRSRVCNMLDT-PFDKGAVTASW 190 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTSC-CCCTTCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhcC-CCCCCCEeEEE
Confidence 457899999999999999998864 4689999999999999999876543 135899999998653 22357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. +--..+++. +.+.|+|||.+++..
T Consensus 191 ~~~~l~~-------~~~~~~l~~-~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 191 NNESTMY-------VDLHDLFSE-HSRFLKVGGRYVTIT 221 (312)
T ss_dssp EESCGGG-------SCHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ECCchhh-------CCHHHHHHH-HHHHcCCCcEEEEEE
Confidence 8644221 114578998 799999999998765
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=108.30 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=83.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++.+...+ -.++++++.+|+.+. ...+++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~-~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEEcCcccC-CCCCCCEeEE
Confidence 3567899999999999999999864 3589999999999999999875432 136899999998663 2235789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ . -..+++. +++.|+|||.+++..
T Consensus 155 ~~~~~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 155 WSQDAFLH--SP--D--KLKVFQE-CARVLKPRGVMAITD 187 (297)
T ss_dssp EEESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Eecchhhh--cC--C--HHHHHHH-HHHHcCCCeEEEEEE
Confidence 98754221 11 1 2578898 899999999998774
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=111.90 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=84.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..++ .+++++.+|+..+. .++||+|+
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Iv 266 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-----VEGEVFASNVFSEV---KGRFDMII 266 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-----CCCEEEECSTTTTC---CSCEEEEE
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-----CCCEEEEccccccc---cCCeeEEE
Confidence 34679999999999999999987666799999999999999999886542 34678999987653 56899999
Q ss_pred EcCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++-+. +.. ..-....+++. +.++|+|||.+++..
T Consensus 267 ~~~~~~~--g~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 267 SNPPFHD--GMQTSLDAAQTLIRG-AVRHLNSGGELRIVA 303 (343)
T ss_dssp ECCCCCS--SSHHHHHHHHHHHHH-HGGGEEEEEEEEEEE
T ss_pred ECCCccc--CccCCHHHHHHHHHH-HHHhCCCCcEEEEEE
Confidence 9976432 110 01113578898 899999999998765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=108.47 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=81.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++...+ -++++++.+|+.+.+. ..++||+
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~ 147 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVP-EFSPYDV 147 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCG-GGCCEEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCeEEEECChhhccc-cCCCeEE
Confidence 35678999999999999999988644 3679999999999999999876442 2469999999987544 2467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+++...+. +. +. +.+.|+|||++++...
T Consensus 148 Iv~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 148 IFVTVGVDE-------VP-----ET-WFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEECSBBSC-------CC-----HH-HHHHEEEEEEEEEEBC
T ss_pred EEEcCCHHH-------HH-----HH-HHHhcCCCcEEEEEEC
Confidence 999965322 11 34 6789999999999864
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.8e-12 Score=109.75 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=80.4
Q ss_pred CCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc---cCCCCCCC-------------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPR------------------- 157 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~---~~~~~~~r------------------- 157 (297)
.+.+|||+|||+|.++..+++. .+..+|+++|+|+.+++.|++++... +. ..+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL---TARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH---HHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc---cccchhhhhhhhhcccccchhh
Confidence 5679999999999999999876 45679999999999999999876432 10 011
Q ss_pred ------eE-------------EEEcchHHHHhc----cCCCceEEEEcCCCCCCCCCc---cCcccHHHHHHHHcccCCC
Q 022451 158 ------LE-------------LVINDARAELES----RKESYDVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNP 211 (297)
Q Consensus 158 ------v~-------------~~~~Da~~~l~~----~~~~yD~Ii~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~p 211 (297)
++ ++.+|+.+.+.. ...+||+|+++++-....... ..-....+++. +.++|+|
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~-~~~~Lkp 206 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS-LASALPA 206 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH-HHHHSCT
T ss_pred hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH-HHHhcCC
Confidence 56 999998776531 334899999997521100000 00112468888 7999999
Q ss_pred CcEEEEe
Q 022451 212 EGIFVTQ 218 (297)
Q Consensus 212 gGvl~~~ 218 (297)
||++++.
T Consensus 207 gG~l~~~ 213 (250)
T 1o9g_A 207 HAVIAVT 213 (250)
T ss_dssp TCEEEEE
T ss_pred CcEEEEe
Confidence 9999983
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.8e-11 Score=103.86 Aligned_cols=120 Identities=9% Similarity=0.048 Sum_probs=92.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..++ -.++++++.+|+.+.+.. .++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g---l~~~I~~~~gD~l~~~~~-~~~~D~Iv 95 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG---LTSKIDVRLANGLSAFEE-ADNIDTIT 95 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhcccc-ccccCEEE
Confidence 56689999999999999999998767899999999999999999987654 236899999999887642 23799988
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.- ....+ -.+++.. ..+.|+++|.|+++.. .. ...+.+.+.+.
T Consensus 96 iaG-------mGg~l-I~~IL~~-~~~~l~~~~~lIlqp~-----~~---~~~lr~~L~~~ 139 (230)
T 3lec_A 96 ICG-------MGGRL-IADILNN-DIDKLQHVKTLVLQPN-----NR---EDDLRKWLAAN 139 (230)
T ss_dssp EEE-------ECHHH-HHHHHHH-TGGGGTTCCEEEEEES-----SC---HHHHHHHHHHT
T ss_pred EeC-------CchHH-HHHHHHH-HHHHhCcCCEEEEECC-----CC---hHHHHHHHHHC
Confidence 741 11222 3478888 7899999999999842 12 34556666655
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-11 Score=110.53 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++.. ++ +..+|++||+|+.+++.|++++..++. .++++++.+|+.+++ ++||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l---~~~v~~~~~D~~~~~----~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKL---EHKIIPILSDVREVD----VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTC---TTTEEEEESCGGGCC----CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEECChHHhc----CCCcEEE
Confidence 4678999999999999999 76 468999999999999999999876641 358999999999876 6899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
+|++.. ..++++. +.+.|+|||++++....+. .....+.+++.+
T Consensus 264 ~dpP~~----------~~~~l~~-~~~~L~~gG~l~~~~~~~~-------~~~~~~~l~~~~ 307 (336)
T 2yx1_A 264 MNLPKF----------AHKFIDK-ALDIVEEGGVIHYYTIGKD-------FDKAIKLFEKKC 307 (336)
T ss_dssp ECCTTT----------GGGGHHH-HHHHEEEEEEEEEEEEESS-------SHHHHHHHHHHS
T ss_pred ECCcHh----------HHHHHHH-HHHHcCCCCEEEEEEeecC-------chHHHHHHHHhc
Confidence 997521 1267787 7899999999988754331 234445555554
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-11 Score=110.10 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=82.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++....++ -.++++++.+|+.+. ....++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcC---CCCcEEEEECcHHHc-cCCCCceEEEE
Confidence 46789999999999999999987 567999999995 9999999876543 235799999998775 22357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++...... . ..-.-..+++. +.+.|+|||+++..
T Consensus 139 s~~~~~~l--~-~~~~~~~~l~~-~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 139 SEWMGYCL--F-YESMLNTVLHA-RDKWLAPDGLIFPD 172 (349)
T ss_dssp ECCCBBTB--T-BTCCHHHHHHH-HHHHEEEEEEEESC
T ss_pred Eccccccc--c-CchhHHHHHHH-HHHhCCCCCEEccc
Confidence 98642210 0 11123467787 78999999998743
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=105.79 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=82.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+...+ ..++++++.+|+.++ +++||+|+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~----~~~fD~v~ 160 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRIV 160 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEEE
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChHHC----CCCcCEEE
Confidence 467899999999999999999864 3599999999999999999876432 136799999998654 37899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ .-.-..+++. +.+.|+|||.+++..
T Consensus 161 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 161 SIEAFEH--FG--HENYDDFFKR-CFNIMPADGRMTVQS 194 (318)
T ss_dssp EESCGGG--TC--GGGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred EeChHHh--cC--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 8754211 11 0123578898 799999999999875
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=108.70 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+++. ..+|++||+++.+++.|++.+...... ...+++++.+|+.++- ..++||+|+
T Consensus 81 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~fD~v~ 155 (299)
T 3g2m_A 81 PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPAD-VRDRCTLVQGDMSAFA--LDKRFGTVV 155 (299)
T ss_dssp CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHH-HHTTEEEEECBTTBCC--CSCCEEEEE
T ss_pred CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccc-cccceEEEeCchhcCC--cCCCcCEEE
Confidence 45569999999999999999986 368999999999999999987642100 0157999999987742 257899998
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+... ... .+ .-.-..+++. +++.|+|||.|++.+.
T Consensus 156 ~~~~~~~~--~~--~~~~~~~l~~-~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 156 ISSGSINE--LD--EADRRGLYAS-VREHLEPGGKFLLSLA 191 (299)
T ss_dssp ECHHHHTT--SC--HHHHHHHHHH-HHHHEEEEEEEEEEEE
T ss_pred ECCccccc--CC--HHHHHHHHHH-HHHHcCCCcEEEEEee
Confidence 6421 111 01 0012578888 7999999999998863
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=110.59 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=82.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++..++ -.++++++.+|+.++.. .++||+|+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~Iv 134 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANN---LDHIVEVIEGSVEDISL--PEKVDVII 134 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTT---CTTTEEEEESCGGGCCC--SSCEEEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcC---CCCeEEEEECchhhcCc--CCcceEEE
Confidence 56789999999999999999987 45699999999 99999999876543 23679999999877532 27899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++..... .. ..-.-..+++. +.+.|+|||+++..
T Consensus 135 ~~~~~~~--l~-~e~~~~~~l~~-~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 135 SEWMGYF--LL-RESMFDSVISA-RDRWLKPTGVMYPS 168 (376)
T ss_dssp ECCCBTT--BT-TTCTHHHHHHH-HHHHEEEEEEEESS
T ss_pred EcChhhc--cc-chHHHHHHHHH-HHhhCCCCeEEEEe
Confidence 9864222 00 01112457887 78999999999754
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=104.10 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=81.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++.+... ++++++.+|+... ....++||+|+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~ 163 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------PVGKFILASMETA-TLPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------SEEEEEESCGGGC-CCCSSCEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC------CceEEEEccHHHC-CCCCCCeEEEE
Confidence 467899999999999999988764 568999999999999999976432 6799999998763 23456899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ .-.-..+++. +.+.|+|||++++..
T Consensus 164 ~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 164 IQWTAIY--LT--DADFVKFFKH-CQQALTPNGYIFFKE 197 (254)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Ecchhhh--CC--HHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence 8754211 11 0012478888 799999999998865
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-11 Score=106.60 Aligned_cols=116 Identities=8% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~yD~ 178 (297)
.++.+|||||||+|..+..+++.. .+|+++|+++.+++.|++...........+++.+..+|+...-. ...++||+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 467899999999999999999863 49999999999999999875321100012578899999877532 23578999
Q ss_pred EEEc--CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGD--LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D--~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++. ...+........-.-..+++. +.++|+|||++++..
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKN-IASMVRPGGLLVIDH 175 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence 9985 222211000000113468888 799999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-10 Score=95.07 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=89.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+||+||||+|.++..+++. ..+++++|+++.+++.|++.+ ++++++.+|+.+. ....++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~~D~i 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF---------PEARWVVGDLSVD-QISETDFDLI 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTTS-CCCCCCEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC---------CCCcEEEcccccC-CCCCCceeEE
Confidence 357789999999999999999986 468999999999999999864 4588999998763 2234689999
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeE
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~ 247 (297)
++... ... .+. -....+++. +.+.|+|||.+++...... ......+.+.+.+. |..+..
T Consensus 112 ~~~~~~~~~--~~~--~~~~~~l~~-~~~~l~~~G~l~~~~~~~~----~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 112 VSAGNVMGF--LAE--DGREPALAN-IHRALGADGRAVIGFGAGR----GWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp EECCCCGGG--SCH--HHHHHHHHH-HHHHEEEEEEEEEEEETTS----SCCHHHHHHHHHHHTEEEEEE
T ss_pred EECCcHHhh--cCh--HHHHHHHHH-HHHHhCCCCEEEEEeCCCC----CcCHHHHHHHHHHcCCEEeee
Confidence 99732 111 000 012478888 7999999999988753221 11234555556554 554433
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-11 Score=110.67 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=85.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-------------CCCCCCeEEEEcchHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-------------AFSDPRLELVINDARAE 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-------------~~~~~rv~~~~~Da~~~ 168 (297)
.+.+|||+|||+|..+..+++..+..+|+++|+|+..++.+++++..+.. .+ .+++++.+|+..+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence 67899999999999999999875567899999999999999999876510 11 2399999999998
Q ss_pred HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+....++||+|++|++. . ..+|++. +.+.|++||++++.+
T Consensus 125 ~~~~~~~fD~I~lDP~~----~------~~~~l~~-a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 125 MAERHRYFHFIDLDPFG----S------PMEFLDT-ALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHSTTCEEEEEECCSS----C------CHHHHHH-HHHHEEEEEEEEEEE
T ss_pred HHhccCCCCEEEeCCCC----C------HHHHHHH-HHHhcCCCCEEEEEe
Confidence 87655689999999752 1 1378888 789999999888763
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=99.98 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=80.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||+||||+|.++..+++.. +..+|+++|+++.+++.|++++.... -++++++.+|+...+. ..++||+
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~ 149 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG----YDNVIVIVGDGTLGYE-PLAPYDR 149 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT----CTTEEEEESCGGGCCG-GGCCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-CCCCeeE
Confidence 3567899999999999999998864 34799999999999999999876432 2569999999865443 2467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+++...+. +. +. +.+.|+|||.+++...
T Consensus 150 v~~~~~~~~-------~~-----~~-~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 150 IYTTAAGPK-------IP-----EP-LIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEESSBBSS-------CC-----HH-HHHTEEEEEEEEEEES
T ss_pred EEECCchHH-------HH-----HH-HHHHcCCCcEEEEEEC
Confidence 999865322 11 24 6889999999998864
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.7e-11 Score=103.13 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc----CCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~----~~~y 176 (297)
.++.+|||||||+|..+..+++..+ +|++||+|+.+++.|++.+. ..+++++.+|+.+.-... ...|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT-------AANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC-------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc-------ccCceEEECcccccccccccccccCc
Confidence 4568999999999999999998753 89999999999999998762 358999999987643211 1349
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++....+. .+. -....+++. +++.|+|||.+++..
T Consensus 126 d~v~~~~~~~~--~~~--~~~~~~l~~-~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 126 ANIYMRTGFHH--IPV--EKRELLGQS-LRILLGKQGAMYLIE 163 (245)
T ss_dssp CEEEEESSSTT--SCG--GGHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred cEEEEcchhhc--CCH--HHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 99999866433 111 112478898 799999999876653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.7e-11 Score=100.39 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=78.6
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+|||||||+|..+..+++. ..+++++|+++.+++.|++.+.... .+++++.+|+.+. ....++||+|++...
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKG-----VKITTVQSNLADF-DIVADAWEGIVSIFC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECCBTTTB-SCCTTTCSEEEEECC
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-----CceEEEEcChhhc-CCCcCCccEEEEEhh
Confidence 9999999999999999886 3599999999999999999876432 4799999998764 223468999998532
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. + .-....+++. +.+.|+|||.+++..
T Consensus 104 -~~---~--~~~~~~~l~~-~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 104 -HL---P--SSLRQQLYPK-VYQGLKPGGVFILEG 131 (202)
T ss_dssp -CC---C--HHHHHHHHHH-HHTTCCSSEEEEEEE
T ss_pred -cC---C--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 11 1 0113468888 799999999998875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.2e-11 Score=103.86 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=92.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..++ -.++++++.+|+.+.+.. .++||+|+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g---l~~~I~v~~gD~l~~~~~-~~~~D~Iv 95 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG---LTEQIDVRKGNGLAVIEK-KDAIDTIV 95 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---CTTTEEEEECSGGGGCCG-GGCCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEecchhhccCc-cccccEEE
Confidence 56689999999999999999998667799999999999999999987654 136899999999887642 23699988
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FK 243 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~ 243 (297)
+. +....+ -.+++.. ..+.|+++|.|+++.. .. ...+.+.|.+. |.
T Consensus 96 ia-------gmGg~l-I~~IL~~-~~~~L~~~~~lIlq~~-----~~---~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 96 IA-------GMGGTL-IRTILEE-GAAKLAGVTKLILQPN-----IA---AWQLREWSEQNNWL 142 (244)
T ss_dssp EE-------EECHHH-HHHHHHH-TGGGGTTCCEEEEEES-----SC---HHHHHHHHHHHTEE
T ss_pred Ee-------CCchHH-HHHHHHH-HHHHhCCCCEEEEEcC-----CC---hHHHHHHHHHCCCE
Confidence 73 111122 3478888 7899999999999842 12 34555666655 44
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=106.92 Aligned_cols=111 Identities=13% Similarity=-0.026 Sum_probs=78.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECC-HHHHHHH---HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID-EEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~a---~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.++.+|||||||+|.++..+++..+..+|++||++ +.|++.| ++..... .-++++++.+|+..+-......+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~----~~~~v~~~~~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG----GLSNVVFVIAAAESLPFELKNIA 98 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT----CCSSEEEECCBTTBCCGGGTTCE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc----CCCCeEEEEcCHHHhhhhccCeE
Confidence 46779999999999999999876667899999999 7777776 7665432 23679999999877522123567
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|.|.+..+.+.. .........++++. ++++|+|||.+++
T Consensus 99 ~~i~~~~~~~~~-~~~~~~~~~~~l~~-~~r~LkpGG~l~i 137 (225)
T 3p2e_A 99 DSISILFPWGTL-LEYVIKPNRDILSN-VADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEESCCHHH-HHHHHTTCHHHHHH-HHTTEEEEEEEEE
T ss_pred EEEEEeCCCcHH-hhhhhcchHHHHHH-HHHhcCCCcEEEE
Confidence 777776542210 00001112468899 8999999999988
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-11 Score=102.83 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC------CcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT------VEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~------~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~ 173 (297)
.+..+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..... .+..++++++.+|+.+.+.. .
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-N 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-G
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-C
Confidence 4567999999999999998887533 25899999999999999998753210 00025799999999874432 3
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
++||+|+++...+. +. +. +.+.|+|||++++....
T Consensus 162 ~~fD~I~~~~~~~~-------~~-----~~-~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 162 APYNAIHVGAAAPD-------TP-----TE-LINQLASGGRLIVPVGP 196 (227)
T ss_dssp CSEEEEEECSCBSS-------CC-----HH-HHHTEEEEEEEEEEESC
T ss_pred CCccEEEECCchHH-------HH-----HH-HHHHhcCCCEEEEEEec
Confidence 67999999865321 21 45 68899999999998754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.8e-11 Score=102.10 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+||+||||+|.++..+++. ..+++++|+++.+++.|++.+.... .+++++.+|+.++. ..++||+|+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~--~~~~fD~v~ 106 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQG-----LKPRLACQDISNLN--INRKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEECCCGGGCC--CSCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcC-----CCeEEEecccccCC--ccCCceEEE
Confidence 46789999999999999999986 3689999999999999999876432 37999999987642 227899999
Q ss_pred EcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.. .-+. .+ ..-.-..+++. +++.|+|||++++..
T Consensus 107 ~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 107 CCLDSTNY--II-DSDDLKKYFKA-VSNHLKEGGVFIFDI 142 (246)
T ss_dssp ECTTGGGG--CC-SHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred EcCccccc--cC-CHHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 864 3211 11 00112468888 799999999999864
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=91.81 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=85.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+ -+++++.+|+.++ +.+||+|+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~----~~~~D~v~ 117 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFK-----GKFKVFIGDVSEF----NSRVDIVI 117 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGT-----TSEEEEESCGGGC----CCCCSEEE
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCEEEEECchHHc----CCCCCEEE
Confidence 45789999999999999999886 34689999999999999999876542 2799999998774 35899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+|++-... ..-....+++. +.+.| ||++++... .......+.+.+.+.
T Consensus 118 ~~~p~~~~----~~~~~~~~l~~-~~~~l--~~~~~~~~~------~~~~~~~~~~~l~~~ 165 (207)
T 1wy7_A 118 MNPPFGSQ----RKHADRPFLLK-AFEIS--DVVYSIHLA------KPEVRRFIEKFSWEH 165 (207)
T ss_dssp ECCCCSSS----STTTTHHHHHH-HHHHC--SEEEEEEEC------CHHHHHHHHHHHHHT
T ss_pred EcCCCccc----cCCchHHHHHH-HHHhc--CcEEEEEeC------CcCCHHHHHHHHHHC
Confidence 99873321 11224578888 67777 676665421 223344455555544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=100.09 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
+++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++.+..... .....+++++.+|+... ....++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence 56789999999999999999986 46899999999999999998754321 11124789999998653 2335789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ ..-....+++. +++.|+|||.+++..
T Consensus 106 ~~~~~l~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 106 VMQAFLTS--VP-DPKERSRIIKE-VFRVLKPGAYLYLVE 141 (235)
T ss_dssp EEESCGGG--CC-CHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcchhhc--CC-CHHHHHHHHHH-HHHHcCCCeEEEEEE
Confidence 98754221 11 00111268888 799999999998864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=100.28 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHh---c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELE---S 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~---~ 171 (297)
.++.+||+||||+|.++..+++.. +..+|+++|+++.+++.|++++..... .+..++++++.+|+.+... .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 457899999999999999998864 346999999999999999998764310 0013689999999987431 1
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..++||+|+++...+ .+ ++. +.+.|+|||++++..
T Consensus 159 ~~~~fD~I~~~~~~~-------~~-----~~~-~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 159 ELGLFDAIHVGASAS-------EL-----PEI-LVDLLAENGKLIIPI 193 (227)
T ss_dssp HHCCEEEEEECSBBS-------SC-----CHH-HHHHEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchH-------HH-----HHH-HHHhcCCCcEEEEEE
Confidence 246799999986532 22 245 678999999999875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-11 Score=107.07 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=83.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|..+..+++. +..+++++|+++.+++.|++.+.... ...+++++.+|+.+.-....++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC---CCccEEEEECCccccccCCCCCcCEE
Confidence 357789999999999999888876 45699999999999999999876432 12579999999876421135689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+..-.. .-....+++. +.+.|+|||.+++..
T Consensus 138 ~~~~~l~~~~~~--~~~~~~~l~~-~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 138 SSQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV 174 (298)
T ss_dssp EEESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EECchhhhhcCC--HHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 987542110000 0112468888 799999999999875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=102.56 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++..+||+||||+|.++..+++. .+++++|+++.+++.|++.+... ..+++++.+|+.+.- ..++||+|+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~ 101 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET-----NRHVDFWVQDMRELE--LPEPVDAIT 101 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCGGGCC--CSSCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc-----CCceEEEEcChhhcC--CCCCcCEEE
Confidence 45689999999999999998875 68999999999999999987643 257999999987642 237899999
Q ss_pred EcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.. .-.. .+ ..-....+++. +.++|+|||++++.+
T Consensus 102 ~~~~~~~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 102 ILCDSLNY--LQ-TEADVKQTFDS-AARLLTDGGKLLFDV 137 (243)
T ss_dssp ECTTGGGG--CC-SHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EeCCchhh--cC-CHHHHHHHHHH-HHHhcCCCeEEEEEc
Confidence 864 1111 00 00112467888 799999999999865
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=111.17 Aligned_cols=104 Identities=23% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHh-ccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELE-SRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~r-v~~~~~Da~~~l~-~~~~~yD~ 178 (297)
++.+|||++||+|.++.++++.. +..+|++||+|+..++.+++++..++. +++ ++++.+|+++++. ...++||+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl---~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI---PEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC---CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 46799999999999999988853 347999999999999999999987641 245 9999999999997 65678999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++|++. .+ .+|++. +.+.|++||++.+..
T Consensus 129 V~lDP~g----~~------~~~l~~-a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDPFG----TP------VPFIES-VALSMKRGGILSLTA 158 (392)
T ss_dssp EEECCSS----CC------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEECCCc----CH------HHHHHH-HHHHhCCCCEEEEEe
Confidence 9999842 11 368888 788999999988764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=107.11 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+..++ -.++++++.+|+.++ ....++||+|+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Iv 136 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNK---LEDTITLIKGKIEEV-HLPVEKVDVII 136 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcC---CCCcEEEEEeeHHHh-cCCCCcEEEEE
Confidence 56789999999999999999986 456999999997 9999999876543 136899999998764 22347899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
++..... .. ..-.-..+++. +.+.|+|||+++
T Consensus 137 s~~~~~~--l~-~~~~~~~~l~~-~~~~LkpgG~li 168 (340)
T 2fyt_A 137 SEWMGYF--LL-FESMLDSVLYA-KNKYLAKGGSVY 168 (340)
T ss_dssp ECCCBTT--BT-TTCHHHHHHHH-HHHHEEEEEEEE
T ss_pred EcCchhh--cc-CHHHHHHHHHH-HHhhcCCCcEEE
Confidence 9863111 00 01112357787 789999999987
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=109.34 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=79.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+++.|||||||+|.++..+++. +..+|++||.++ +++.|++....++ -..+++++.+|..+. ..++++|+|++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~---~~~~i~~i~~~~~~~--~lpe~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNG---LEDRVHVLPGPVETV--ELPEQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcC---CCceEEEEeeeeeee--cCCccccEEEe
Confidence 5789999999999999988886 578999999997 7899998877654 247899999998764 23578999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
...... .....+ -..++.. ..+.|+|||+++-
T Consensus 156 E~~~~~--l~~e~~-l~~~l~a-~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYG--LLHESM-LSSVLHA-RTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTT--BTTTCS-HHHHHHH-HHHHEEEEEEEES
T ss_pred eccccc--ccccch-hhhHHHH-HHhhCCCCceECC
Confidence 776422 111112 2356666 5799999998863
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=106.43 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhc-c---CCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELES-R---KESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~-~---~~~y 176 (297)
++.+|||+|||+|.++..+++..+..+|++||+++.+++.|++++...+ -.++++++.+|+.+ ++.. . +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC---CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence 5679999999999999888876445799999999999999999886542 13579999999765 2221 1 2589
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+|+++++
T Consensus 142 D~i~~npp 149 (254)
T 2h00_A 142 DFCMCNPP 149 (254)
T ss_dssp SEEEECCC
T ss_pred cEEEECCC
Confidence 99999976
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.6e-11 Score=100.01 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=78.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||+|||+|..+..++... ..+|+++|+++.+++.|++++... .++++++.+|+.+. ...+++||+|
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~fD~v 93 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENFSREN-----NFKLNISKGDIRKL-PFKDESMSFV 93 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT-TCEEEEEECCHHHHHHHHHHHHHH-----TCCCCEEECCTTSC-CSCTTCEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEECchhhC-CCCCCceeEE
Confidence 3567899999999998754444433 469999999999999999987643 25789999998763 2235789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ .-....+++. +.+.|+|||++++..
T Consensus 94 ~~~~~l~~--~~--~~~~~~~l~~-~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 94 YSYGTIFH--MR--KNDVKEAIDE-IKRVLKPGGLACINF 128 (209)
T ss_dssp EECSCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcChHHh--CC--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 98643111 11 0113468888 799999999998875
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.13 E-value=7.7e-10 Score=93.93 Aligned_cols=97 Identities=19% Similarity=0.163 Sum_probs=73.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++..+++. +..+|++||+|+.+++.|++++. +++++.+|+.++ +++||+|
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~----~~~~D~v 114 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEI----SGKYDTW 114 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGC----CCCEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHC----CCCeeEE
Confidence 346789999999999999999886 45689999999999999998753 689999998773 2689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+++++-... . .-....+++. +.+.| |+++++
T Consensus 115 ~~~~p~~~~--~--~~~~~~~l~~-~~~~~--g~~~~~ 145 (200)
T 1ne2_A 115 IMNPPFGSV--V--KHSDRAFIDK-AFETS--MWIYSI 145 (200)
T ss_dssp EECCCC-----------CHHHHHH-HHHHE--EEEEEE
T ss_pred EECCCchhc--c--CchhHHHHHH-HHHhc--CcEEEE
Confidence 999874321 1 1123578888 67777 554443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=109.30 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=87.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~y 176 (297)
...++.+|||+|||+|+.+..+++..+. .+|+++|+++.+++.+++++...+ -++++++.+|+..+.... +++|
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG----IKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCTTCCSSSSCSSCE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEEEcChhhcchhhccCCC
Confidence 3456689999999999999999986544 799999999999999999876442 257999999987753222 2679
Q ss_pred eEEEEcCCCCCC----CCCc-------cCc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 177 DVIIGDLADPIE----GGPC-------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 177 D~Ii~D~~~~~~----~~p~-------~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
|+|++|++-... ..|. ..+ ...++++. +.+.|+|||.++..+++
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLES-AARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHH-HHTTEEEEEEEEEEESC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCC
Confidence 999999863110 0110 000 01568888 79999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.8e-11 Score=102.78 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=80.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+||+||||+|..+..+++. ..+|+++|+++.+++.|++.+... ..+++++.+|+.+.. ..++||+|+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~v~ 110 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAVT 110 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc-----CCceEEEECChhhcc--cCCCccEEE
Confidence 45689999999999999999986 358999999999999999987643 247999999987742 246799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+....... .+ .-.-..+++. +.++|+|||++++..
T Consensus 111 ~~~~~~~~-~~--~~~~~~~l~~-~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 111 MFFSTIMY-FD--EEDLRKLFSK-VAEALKPGGVFITDF 145 (252)
T ss_dssp ECSSGGGG-SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EcCCchhc-CC--HHHHHHHHHH-HHHHcCCCeEEEEec
Confidence 75321100 00 0012468888 799999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=96.68 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=84.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCC---------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHh
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTV---------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELE 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~---------~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~l~ 170 (297)
.++.+|||||||+|.++..+++..+. .+|+++|+++.. ..++++++ .+|....-.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------------~~~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------------PLEGATFLCPADVTDPRT 85 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------------CCTTCEEECSCCTTSHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------------cCCCCeEEEeccCCCHHH
Confidence 56789999999999999999987543 799999999831 12568888 888654311
Q ss_pred -------ccCCCceEEEEcCCCCCCCCCccCccc--------HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH
Q 022451 171 -------SRKESYDVIIGDLADPIEGGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (297)
Q Consensus 171 -------~~~~~yD~Ii~D~~~~~~~~p~~~L~t--------~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~ 235 (297)
..+++||+|+++...... +. ...+ ..+++. +.+.|+|||.+++.... ......+.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lv~~~~~------~~~~~~~~ 155 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNAT-GF--RDLDHDRLISLCLTLLSV-TPDILQPGGTFLCKTWA------GSQSRRLQ 155 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCC-SC--HHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC------SGGGHHHH
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCC-CC--cccCHHHHHHHHHHHHHH-HHHHhcCCCEEEEEecC------CccHHHHH
Confidence 123579999998642211 10 1111 367888 79999999999987522 12345666
Q ss_pred HHHHhhCCceeEE
Q 022451 236 NTLRQVFKYVVPY 248 (297)
Q Consensus 236 ~~l~~~F~~v~~~ 248 (297)
..+++.|..+..+
T Consensus 156 ~~l~~~f~~v~~~ 168 (196)
T 2nyu_A 156 RRLTEEFQNVRII 168 (196)
T ss_dssp HHHHHHEEEEEEE
T ss_pred HHHHHHhcceEEE
Confidence 7777778776544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=99.44 Aligned_cols=102 Identities=13% Similarity=0.201 Sum_probs=77.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+||+||||+|..+..+++.. .+++++|+++.+++.|++.+ ++++++.+|+.+.- ..++||+|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------~~~~~~~~d~~~~~--~~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------PDATLHQGDMRDFR--LGRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------TTCEEEECCTTTCC--CSSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------CCCEEEECCHHHcc--cCCCCcEEE
Confidence 567899999999999999999864 38999999999999999863 46899999987642 256899999
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+... -+. .+ ..-....+++. +++.|+|||.+++..
T Consensus 106 ~~~~~~~~--~~-~~~~~~~~l~~-~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 106 SMFSSVGY--LK-TTEELGAAVAS-FAEHLEPGGVVVVEP 141 (239)
T ss_dssp ECTTGGGG--CC-SHHHHHHHHHH-HHHTEEEEEEEEECC
T ss_pred EcCchHhh--cC-CHHHHHHHHHH-HHHhcCCCeEEEEEe
Confidence 5321 111 10 00112468888 799999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=99.01 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=78.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+||+||||+|.++..+++.. .+|+++|+++.+++.|++++... .+++++.+|+.+.+. ..++||+|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~-~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY------NNIKLILGDGTLGYE-EEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC------SSEEEEESCGGGCCG-GGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc------CCeEEEECCcccccc-cCCCccEE
Confidence 3567899999999999999999864 79999999999999999987533 279999999877333 34689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+++..-+ .+. +. +.+.|+|||++++...
T Consensus 139 ~~~~~~~-------~~~-----~~-~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 139 VVWATAP-------TLL-----CK-PYEQLKEGGIMILPIG 166 (231)
T ss_dssp EESSBBS-------SCC-----HH-HHHTEEEEEEEEEEEC
T ss_pred EECCcHH-------HHH-----HH-HHHHcCCCcEEEEEEc
Confidence 9986432 121 24 6789999999998764
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=98.65 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=77.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|..+..+ +..+++++|+++.+++.|++.+ ++++++.+|+.+. ...+++||+|+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~ 100 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA---------PEATWVRAWGEAL-PFPGESFDVVL 100 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC---------TTSEEECCCTTSC-CSCSSCEEEEE
T ss_pred CCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcccccC-CCCCCcEEEEE
Confidence 47789999999999999876 2348999999999999999874 4688999997653 23356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ ...++++. +.+.|+|||.+++..
T Consensus 101 ~~~~l~~--~~----~~~~~l~~-~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 101 LFTTLEF--VE----DVERVLLE-ARRVLRPGGALVVGV 132 (211)
T ss_dssp EESCTTT--CS----CHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EcChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence 8755332 11 12478888 799999999998875
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-10 Score=97.61 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=79.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...+. .+..++++++.+|+..... ...+||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 567899999999999999988763 446999999999999999998754210 0012579999999875432 2467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+++...+ .+. +. +.+.|+|||++++...
T Consensus 155 i~~~~~~~-------~~~-----~~-~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAP-------VVP-----QA-LIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEECSBBS-------SCC-----HH-HHHTEEEEEEEEEEES
T ss_pred EEECCchH-------HHH-----HH-HHHhcCCCcEEEEEEe
Confidence 99986421 222 35 6889999999998864
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-10 Score=105.11 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+..++ -.++++++.+|+.+.- ..++||+|+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~---l~~~v~~~~~d~~~~~--~~~~~D~Iv 121 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEVS--LPEQVDIII 121 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTT---CTTTEEEEESCTTTCC--CSSCEEEEE
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcC---CCCcEEEEEcchhhCC--CCCceeEEE
Confidence 46789999999999999999986 467999999997 7899998876442 1368999999987641 236899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...... ..... ..+.+.. +++.|+|||++++.
T Consensus 122 s~~~~~~--~~~~~--~~~~l~~-~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 122 SEPMGYM--LFNER--MLESYLH-AKKYLKPSGNMFPT 154 (348)
T ss_dssp ECCCBTT--BTTTS--HHHHHHH-GGGGEEEEEEEESC
T ss_pred EeCchhc--CChHH--HHHHHHH-HHhhcCCCeEEEEe
Confidence 9865221 00011 2366777 78999999999854
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=99.96 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=76.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK----SYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~----~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.+. +..... ..++++++.+|+.+ +....+.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~----~~~~v~~~~~d~~~-l~~~~~~- 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG----GLPNLLYLWATAER-LPPLSGV- 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT----CCTTEEEEECCSTT-CCSCCCE-
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc----CCCceEEEecchhh-CCCCCCC-
Confidence 5678999999999999999999877889999999999888532 222221 23589999999877 3333344
Q ss_pred eEEEEcCCCCCCCCCccC-cccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~-L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|.|++...... ..... --...+++. +++.|+|||.+++..
T Consensus 100 d~v~~~~~~~~--~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 100 GELHVLMPWGS--LLRGVLGSSPEMLRG-MAAVCRPGASFLVAL 140 (218)
T ss_dssp EEEEEESCCHH--HHHHHHTSSSHHHHH-HHHTEEEEEEEEEEE
T ss_pred CEEEEEccchh--hhhhhhccHHHHHHH-HHHHcCCCcEEEEEe
Confidence 87775442100 00000 001378888 899999999998864
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-10 Score=108.62 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+ -++++++.+|+..+.....+.||+|+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g----~~nv~~~~~D~~~~~~~~~~~fD~Il 192 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG----ISNVALTHFDGRVFGAAVPEMFDAIL 192 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT----CCSEEEECCCSTTHHHHSTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHhhhhccccCCEEE
Confidence 67899999999999999998864 34799999999999999999986542 24799999999886543456899999
Q ss_pred EcCCCC-C---CCCCcc-Ccc-----------cHHHHHHHHcccCCCCcEEEEecCC
Q 022451 181 GDLADP-I---EGGPCY-KLY-----------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 181 ~D~~~~-~---~~~p~~-~L~-----------t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+|++-. . ...|.. ..+ ..++++. +.+.|+|||+|+..+++
T Consensus 193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDS-AFHALRPGGTLVYSTCT 248 (479)
T ss_dssp EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESC
T ss_pred ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHH-HHHhcCCCCEEEEeccc
Confidence 998621 1 001110 011 2467787 78999999999988764
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-11 Score=100.18 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=75.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|.++..+....|..+++++|+|+.+++++++++...+. ..++++ .|..... ..++||+|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~---~~~v~~--~d~~~~~--~~~~~DvVL 120 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT---TIKYRF--LNKESDV--YKGTYDVVF 120 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC---SSEEEE--ECCHHHH--TTSEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CccEEE--ecccccC--CCCCcChhh
Confidence 678999999999999999998877778999999999999999999875431 114554 6765542 457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.-..-|.-..... ..+ . +.+.|+|||+++-.
T Consensus 121 a~k~LHlL~~~~~-----al~-~-v~~~L~pggvfISf 151 (200)
T 3fzg_A 121 LLKMLPVLKQQDV-----NIL-D-FLQLFHTQNFVISF 151 (200)
T ss_dssp EETCHHHHHHTTC-----CHH-H-HHHTCEEEEEEEEE
T ss_pred HhhHHHhhhhhHH-----HHH-H-HHHHhCCCCEEEEe
Confidence 8754221000001 133 4 57899999999754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=107.88 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=82.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC---CCCCCCeEEEEcchHHHH-----hcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE---AFSDPRLELVINDARAEL-----ESR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~---~~~~~rv~~~~~Da~~~l-----~~~ 172 (297)
+++.+|||||||+|..+..+++. +..+++++|+++.+++.|++.+..... .....+++++.+|+.... ...
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998875 467999999999999999998753210 001247999999987652 112
Q ss_pred CCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.++||+|++...-++ .. ... .-..+++. +.++|+|||++++.+
T Consensus 112 ~~~fD~V~~~~~l~~--~~-~~~~~~~~~l~~-~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 112 QMCFDICSCQFVCHY--SF-ESYEQADMMLRN-ACERLSPGGYFIGTT 155 (313)
T ss_dssp TCCEEEEEEETCGGG--GG-GSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhh--cc-CCHHHHHHHHHH-HHHHhCCCcEEEEec
Confidence 358999999764332 10 011 12478898 799999999999875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=105.32 Aligned_cols=114 Identities=9% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC--CCCeEEEEcch----H-HHHhc--
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDA----R-AELES-- 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--~~rv~~~~~Da----~-~~l~~-- 171 (297)
+.+.+|||||||+|..+..+++. +..+|+++|+++.+++.|+++......... ..+++++++|. . .-+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 34689999999999866555553 357899999999999999998653210000 01366777776 1 12221
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..++||+|++...-+..-.+ .+. ..+++. +.++|+|||++++.+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~-~~~--~~~l~~-~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHP-RHY--ATVMNN-LSELTASGGKVLITT 169 (302)
T ss_dssp CSSCEEEEEEESCGGGTCST-TTH--HHHHHH-HHHHEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHHhCCH-HHH--HHHHHH-HHHHcCCCCEEEEEe
Confidence 34689999876432210011 122 578999 799999999998875
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=99.62 Aligned_cols=103 Identities=24% Similarity=0.289 Sum_probs=79.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+||+||||+|.++..+++..+ .+|+++|+++.+++.|++++...+ -++++++.+|+..-+.. ..+||+|
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~fD~I 162 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFPP-KAPYDVI 162 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC----CCCcEEEECCcccCCCC-CCCccEE
Confidence 35677999999999999999998755 789999999999999999876442 24699999998333322 3469999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+++...+. +. +. +.+.|+|||++++.+..
T Consensus 163 i~~~~~~~-------~~-----~~-~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 163 IVTAGAPK-------IP-----EP-LIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp EECSBBSS-------CC-----HH-HHHTEEEEEEEEEEECS
T ss_pred EECCcHHH-------HH-----HH-HHHhcCCCcEEEEEEec
Confidence 99864321 21 24 67899999999988753
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-10 Score=103.62 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++.+..++ -.++++++.+|+.+. ....++||+|+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~~D~Iv 110 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIII 110 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcC---CCCCEEEEECchhhc-cCCCCcccEEE
Confidence 35689999999999999999986 46799999999 58999999876543 136899999998764 22346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
++..... .. ..-.-..++.. +++.|+|||+++.
T Consensus 111 s~~~~~~--l~-~~~~~~~~l~~-~~~~LkpgG~li~ 143 (328)
T 1g6q_1 111 SEWMGYF--LL-YESMMDTVLYA-RDHYLVEGGLIFP 143 (328)
T ss_dssp ECCCBTT--BS-TTCCHHHHHHH-HHHHEEEEEEEES
T ss_pred EeCchhh--cc-cHHHHHHHHHH-HHhhcCCCeEEEE
Confidence 9865221 00 01112367777 7899999999973
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=100.94 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=81.6
Q ss_pred CCCeEEEEccch---hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--H-------
Q 022451 102 NPKTIFIMGGGE---GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L------- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~---G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l------- 169 (297)
...+|||||||+ |.++..+.+..+..+|++||+||.|++.|++.+.. .++++++.+|+++. +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------~~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------DPNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT------CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC------CCCeEEEEeeCCCchhhhccchhh
Confidence 458999999999 98877776666678999999999999999998732 36899999998653 1
Q ss_pred hc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 170 ES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 170 ~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.. ...+||+|++...-++ .+. . --..+++. +.++|+|||.|++...
T Consensus 151 ~~~d~~~~d~v~~~~vlh~--~~d-~-~~~~~l~~-~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHY--LSP-D-VVDRVVGA-YRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHCCTTSCCEEEETTTGGG--SCT-T-THHHHHHH-HHHHSCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEechhhh--CCc-H-HHHHHHHH-HHHhCCCCcEEEEEEe
Confidence 11 1247999998765332 111 1 13478898 7999999999998764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=103.55 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCeEEEEccchhHHHHHH----HhcCCCcEE--EEEECCHHHHHHHHhhhhhccCCCCCCCe--EEEEcchHHHHh---
Q 022451 102 NPKTIFIMGGGEGSTAREI----LRHKTVEKV--VMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELE--- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l----~~~~~~~~v--~~VEid~~vi~~a~~~f~~~~~~~~~~rv--~~~~~Da~~~l~--- 170 (297)
++.+|||||||+|.++..+ +...+..+| ++||+++.|++.|++.+.... .-+++ .+..+|+..+..
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS---NLENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS---SCTTEEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc---CCCcceEEEEecchhhhhhhhc
Confidence 4579999999999765433 332344544 999999999999999864321 11344 456677765542
Q ss_pred --ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 171 --SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++||+|++...-++...+ ..+++. ++++|+|||.+++..
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~------~~~l~~-~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDI------PATLKF-FHSLLGTNAKMLIIV 172 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred cccCCCceeEEEEeeeeeecCCH------HHHHHH-HHHHcCCCcEEEEEE
Confidence 135789999988653331112 368888 899999999998764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=108.61 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=79.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHH-------HhhhhhccCCCCCCCeEEEEcchHH---HH
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC-------KSYLVVNKEAFSDPRLELVINDARA---EL 169 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------~~~f~~~~~~~~~~rv~~~~~Da~~---~l 169 (297)
..++.+|||||||+|.++..+++..+..+|++||+++.+++.| ++++...+ +.-.+++++.+|+.. .+
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~gD~~~~~~~~ 317 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLKKSFVDNNRV 317 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEESSCSTTCHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEcCcccccccc
Confidence 3567899999999999999999865567899999999999999 76654332 112689999987542 12
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
....++||+|+++.+- . .+ . -...++. +.+.|+|||.+++.
T Consensus 318 ~~~~~~FDvIvvn~~l-~--~~--d--~~~~L~e-l~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 318 AELIPQCDVILVNNFL-F--DE--D--LNKKVEK-ILQTAKVGCKIISL 358 (433)
T ss_dssp HHHGGGCSEEEECCTT-C--CH--H--HHHHHHH-HHTTCCTTCEEEES
T ss_pred ccccCCCCEEEEeCcc-c--cc--c--HHHHHHH-HHHhCCCCeEEEEe
Confidence 2223679999986432 1 11 1 1246677 78999999999876
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=102.72 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++ +..+|+++|+++.+++.|++. ++++++.+|+.+ +...+++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~~d~~~-~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH----------PQVEWFTGYAEN-LALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC----------TTEEEECCCTTS-CCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc----------cCCEEEECchhh-CCCCCCCEeEE
Confidence 35788999999999999999997 357999999999999887753 379999999865 33345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-..... -..+++. +.++|+ ||.+++..
T Consensus 99 ~~~~~l~~~~~------~~~~l~~-~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 99 ISILAIHHFSH------LEKSFQE-MQRIIR-DGTIVLLT 130 (261)
T ss_dssp EEESCGGGCSS------HHHHHHH-HHHHBC-SSCEEEEE
T ss_pred EEcchHhhccC------HHHHHHH-HHHHhC-CcEEEEEE
Confidence 99865322111 2478888 799999 99665554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=97.41 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.++.+||+||||+|..+..+++. + .+++++|+++.+++.+++.+ .+++.+|+.++ +...+++||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcCCCCCCCccCEE
Confidence 56789999999999999999987 4 79999999999999999753 26788887654 22234689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.. .+ -..++++. +++.|+|||.+++..
T Consensus 98 ~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 98 IFGDVLEH--LF----DPWAVIEK-VKPYIKQNGVILASI 130 (230)
T ss_dssp EEESCGGG--SS----CHHHHHHH-TGGGEEEEEEEEEEE
T ss_pred EECChhhh--cC----CHHHHHHH-HHHHcCCCCEEEEEe
Confidence 98644221 11 12478898 899999999998875
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=103.61 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=80.3
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccCCCCCCCeEEEEcchHHHHhc-c
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEAFSDPRLELVINDARAELES-R 172 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-----~~~~~~~~rv~~~~~Da~~~l~~-~ 172 (297)
...+..+|||||||+|.++..++...+..+|++||+++.++++|++.... ....+..++++++.+|+.+.--. .
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~ 249 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER 249 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence 34567899999999999999988766666799999999999999875321 00011236899999998664211 1
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-..||+|+++.+- + .+ . -...+.. +.+.|+|||.|++..
T Consensus 250 ~~~aDVVf~Nn~~-F--~p--d--l~~aL~E-i~RvLKPGGrIVssE 288 (438)
T 3uwp_A 250 IANTSVIFVNNFA-F--GP--E--VDHQLKE-RFANMKEGGRIVSSK 288 (438)
T ss_dssp HHTCSEEEECCTT-C--CH--H--HHHHHHH-HHTTSCTTCEEEESS
T ss_pred cCCccEEEEcccc-c--Cc--h--HHHHHHH-HHHcCCCCcEEEEee
Confidence 1369999997542 1 11 1 1245666 689999999998763
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-10 Score=104.96 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=82.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|.++..+++..|..+++++|+ |.+++.|++++...+ ..+|++++.+|..+.-...++.||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~p~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS---GSERIHGHGANLLDRDVPFPTGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT---TGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC---cccceEEEEccccccCCCCCCCcCEEE
Confidence 4678999999999999999998777789999999 999999999876432 136899999997653000136799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. -+. -....+++. +++.|+|||.+++..
T Consensus 254 ~~~vlh~--~~~--~~~~~~l~~-~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 254 MSQFLDC--FSE--EEVISILTR-VAQSIGKDSKVYIME 287 (363)
T ss_dssp EESCSTT--SCH--HHHHHHHHH-HHHHCCTTCEEEEEE
T ss_pred Eechhhh--CCH--HHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 8654221 110 012367888 799999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.1e-10 Score=98.62 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=76.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+++.+|||||||+|.++..+++. ..+++++|+++.+++.|++... . .++.+|+.+. ...+++||+|+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~--------~--~~~~~d~~~~-~~~~~~fD~v~ 119 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAEDL-PFPSGAFEAVL 119 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTSC-CSCTTCEEEEE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC--------C--CEEECcHHHC-CCCCCCEEEEE
Confidence 47789999999999999999986 3689999999999999998742 1 2788887653 23357899999
Q ss_pred EcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+... .+. .+ . -..+++. +.+.|+|||.+++..
T Consensus 120 ~~~~~~~~--~~--~--~~~~l~~-~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 120 ALGDVLSY--VE--N--KDKAFSE-IRRVLVPDGLLIATV 152 (260)
T ss_dssp ECSSHHHH--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Ecchhhhc--cc--c--HHHHHHH-HHHHcCCCeEEEEEe
Confidence 8642 111 01 1 3578888 799999999999875
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=100.66 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=76.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++.. ++++++.+|+... ...+++||+|+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~d~~~~-~~~~~~fD~v~ 153 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------PQVTFCVASSHRL-PFSDTSMDAII 153 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------TTSEEEECCTTSC-SBCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------CCcEEEEcchhhC-CCCCCceeEEE
Confidence 4678999999999999999998755679999999999999999863 4688999997653 23356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+... + .+++. +.+.|+|||.+++.+
T Consensus 154 ~~~~------~-------~~l~~-~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 154 RIYA------P-------CKAEE-LARVVKPGGWVITAT 178 (269)
T ss_dssp EESC------C-------CCHHH-HHHHEEEEEEEEEEE
T ss_pred EeCC------h-------hhHHH-HHHhcCCCcEEEEEE
Confidence 7532 1 23567 789999999998875
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=103.99 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=79.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||+|||+|.++..+++. ..+|++||+++.+++.|+++...++ -+ ++++.+|+.+++.. +||+|+
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ng----l~-v~~~~~d~~~~~~~---~fD~Vv 358 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINN----VD-AEFEVASDREVSVK---GFDTVI 358 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT----CC-EEEEECCTTTCCCT---TCSEEE
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC----Cc-EEEEECChHHcCcc---CCCEEE
Confidence 56789999999999999999885 4699999999999999999987653 23 99999999887532 799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++.. + ...++++. +. .|+|+|++.+.+
T Consensus 359 ~dPPr~---g-----~~~~~~~~-l~-~l~p~givyvsc 387 (425)
T 2jjq_A 359 VDPPRA---G-----LHPRLVKR-LN-REKPGVIVYVSC 387 (425)
T ss_dssp ECCCTT---C-----SCHHHHHH-HH-HHCCSEEEEEES
T ss_pred EcCCcc---c-----hHHHHHHH-HH-hcCCCcEEEEEC
Confidence 997631 1 13457776 44 699999999875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=101.08 Aligned_cols=107 Identities=15% Similarity=0.097 Sum_probs=82.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+.+|||||||+|.++..+++..|..+++++|+ |.+++.|++++...+ -.++++++.+|..+. .+..||+|+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---l~~~v~~~~~d~~~~---~p~~~D~v~ 273 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG---LADRCEILPGDFFET---IPDGADVYL 273 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTTC---CCSSCSEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC---cCCceEEeccCCCCC---CCCCceEEE
Confidence 4678999999999999999998877889999999 999999999876432 137899999998632 223799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 274 ~~~vlh~--~~--d~~~~~~L~~-~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 274 IKHVLHD--WD--DDDVVRILRR-IATAMKPDSRLLVID 307 (369)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEEE
T ss_pred hhhhhcc--CC--HHHHHHHHHH-HHHHcCCCCEEEEEE
Confidence 8754221 11 1111258898 799999999998764
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-10 Score=101.41 Aligned_cols=106 Identities=9% Similarity=0.039 Sum_probs=81.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+.+|||||||+|.++..+++..|..+++++|+ |.+++.|++++...+ -.+|++++.+|..+. .+..||+|++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~p~~~D~v~~ 241 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG---LSGRAQVVVGSFFDP---LPAGAGGYVL 241 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CCCSCSEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC---cCcCeEEecCCCCCC---CCCCCcEEEE
Confidence 468999999999999999998777789999999 999999999876432 137899999997632 2237999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 242 ~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 242 SAVLHD--WD--DLSAVAILRR-CAEAAGSGGVVLVIE 274 (332)
T ss_dssp ESCGGG--SC--HHHHHHHHHH-HHHHHTTTCEEEEEE
T ss_pred ehhhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 654221 11 0012468898 799999999998864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=96.81 Aligned_cols=106 Identities=10% Similarity=0.041 Sum_probs=73.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~~~~~yD~ 178 (297)
..++.+|||||||+|.++..+++. ..+|++||+|+.|++.|++++... .++....|... ......++||+
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~ 113 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDF 113 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSE
T ss_pred CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccE
Confidence 456789999999999999999986 468999999999999999976421 23333333211 00122468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+++..-.. -+... -..+++. +.++| |||++++...
T Consensus 114 Vv~~~~l~~--~~~~~--~~~~l~~-l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 114 VLNDRLINR--FTTEE--ARRACLG-MLSLV-GSGTVRASVK 149 (261)
T ss_dssp EEEESCGGG--SCHHH--HHHHHHH-HHHHH-TTSEEEEEEE
T ss_pred EEEhhhhHh--CCHHH--HHHHHHH-HHHhC-cCcEEEEEec
Confidence 999854211 01001 2357787 78899 9999998863
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-10 Score=103.00 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=79.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-------------------------C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------D 155 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-------------------------~ 155 (297)
.++++||+||||+|.++..+++... .+|+++|+++.+++.|++.+......++ .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999988887643 5899999999999999988653210000 0
Q ss_pred CCe-EEEEcchHHHHhccC---CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 156 PRL-ELVINDARAELESRK---ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 156 ~rv-~~~~~Da~~~l~~~~---~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.++ +++.+|+.+...... ++||+|++...-.. .+...-.-..+++. +.++|+|||.+++..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~--~~~~~~~~~~~l~~-~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA--ACPDLPAYRTALRN-LGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh--hcCChHHHHHHHHH-HHhhCCCCcEEEEEe
Confidence 127 899999876532223 68999998754210 00000012467888 799999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-09 Score=99.71 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||+|||+|.++.+++...+..+|+++|+|+.+++.|++++...+ -.++++++.+|+.+.. ...++||+|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g---l~~~i~~~~~D~~~~~-~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG---VLDKIKFIQGDATQLS-QYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT---CGGGCEEEECCGGGGG-GTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCCceEEEECChhhCC-cccCCcCEE
Confidence 456789999999999999999987554589999999999999999986543 1257999999998753 334789999
Q ss_pred EEcCCCCCCCCCc---cCcccHHHHHHHHcccC
Q 022451 180 IGDLADPIEGGPC---YKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 180 i~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L 209 (297)
++|++-....+.. ..+ ..++++. ++++|
T Consensus 291 i~npPyg~r~~~~~~~~~l-y~~~~~~-l~r~l 321 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDL-YMKFFNE-LAKVL 321 (373)
T ss_dssp EEECCCC------CCHHHH-HHHHHHH-HHHHE
T ss_pred EECCCCCcccCcchhHHHH-HHHHHHH-HHHHc
Confidence 9998732211110 122 2467788 78888
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-10 Score=97.79 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=78.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHH------HHHHHHhhhhhccCCCCCCCeEEEEcc-hHHH-Hh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE------VVEFCKSYLVVNKEAFSDPRLELVIND-ARAE-LE 170 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~------vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~-l~ 170 (297)
..++.+|||||||+|.++..+++.. +..+|+++|+++. +++.|++++.... ..++++++.+| .... +.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~ 117 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP---LGDRLTVHFNTNLSDDLGP 117 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST---TGGGEEEECSCCTTTCCGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC---CCCceEEEECChhhhccCC
Confidence 4567899999999999999999863 4579999999997 9999999876432 12689999998 2211 12
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...++||+|++...-.....+ ..+++. +++.++|||.+++..
T Consensus 118 ~~~~~fD~v~~~~~l~~~~~~------~~~~~~-~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 118 IADQHFDRVVLAHSLWYFASA------NALALL-FKNMAAVCDHVDVAE 159 (275)
T ss_dssp GTTCCCSEEEEESCGGGSSCH------HHHHHH-HHHHTTTCSEEEEEE
T ss_pred CCCCCEEEEEEccchhhCCCH------HHHHHH-HHHHhCCCCEEEEEE
Confidence 235789999987543221111 235565 677777799998864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-10 Score=102.77 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+.+|||||||+|.++..+++..|..+++++|+ |.+++.|++++.... ..+|++++.+|..+.-....+.||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD---LGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC---CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 78999999999999999998777789999999 899999999876432 13689999999866421134569999986
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..-+. .+. -....+++. +++.|+|||.+++..
T Consensus 256 ~vlh~--~~~--~~~~~~l~~-~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 256 DCLHY--FDA--REAREVIGH-AAGLVKPGGALLILT 287 (352)
T ss_dssp SCGGG--SCH--HHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ccccc--CCH--HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence 54221 010 012478888 799999999998764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=101.97 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ -.++++++.+|..+.+ ...||+|+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~ 253 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKPL---PVTADVVL 253 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCcC---CCCCCEEE
Confidence 4578999999999999999998777789999999 999999999876432 1358999999986533 23499999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 254 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 287 (374)
T 1qzz_A 254 LSFVLLN--WS--DEDALTILRG-CVRALEPGGRLLVLD 287 (374)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EeccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 8754211 11 0011368898 799999999887654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-08 Score=92.97 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccC--------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-------- 173 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~-------- 173 (297)
.+++|||+|||+|.++..+++. ..+|++||+++.+++.|+++...++ -++++++.+|+.+++....
T Consensus 213 ~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng----~~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 213 SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANH----IDNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTT----CCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECCHHHHHHHHhhccccccc
Confidence 3678999999999999988874 4699999999999999999987653 2589999999998875321
Q ss_pred -------CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 174 -------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 174 -------~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
.+||+|++|++.. .+ ..+++ +.|+++|.++.-++.
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~-------g~-~~~~~-----~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRS-------GL-DSETE-----KMVQAYPRILYISCN 328 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTT-------CC-CHHHH-----HHHTTSSEEEEEESC
T ss_pred cccccccCCCCEEEECcCcc-------cc-HHHHH-----HHHhCCCEEEEEECC
Confidence 2799999997632 11 22333 344577877766543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.3e-10 Score=106.99 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|++||+++ +++.|++.+...+ -.++++++.+|+.++ ...++||+|+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~g---l~~~v~~~~~d~~~~--~~~~~fD~Iv 229 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNN---LTDRIVVIPGKVEEV--SLPEQVDIII 229 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTT---CTTTEEEEESCTTTC--CCSSCEEEEE
T ss_pred cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcC---CCCcEEEEECchhhC--ccCCCeEEEE
Confidence 45789999999999999999885 567999999999 8899998876542 136899999998764 1236899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...... .. .. ..+.+.. +++.|+|||++++..
T Consensus 230 s~~~~~~~-~~-e~--~~~~l~~-~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 230 SEPMGYML-FN-ER--MLESYLH-AKKYLKPSGNMFPTI 263 (480)
T ss_dssp CCCCHHHH-TC-HH--HHHHHHH-GGGGEEEEEEEESCE
T ss_pred EeCchHhc-Cc-HH--HHHHHHH-HHHhcCCCCEEEEEe
Confidence 97541100 00 01 1356667 689999999998543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-09 Score=98.60 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|.++..+++..|..+++++|+ |.+++.|++++...+ ..+|++++.+|+.+. .-..+|+|
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v 260 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAV 260 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT---CTTTEEEEECCTTTS---CCCCCSEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC---CCCCEEEEeCccccC---CCCCCCEE
Confidence 35678999999999999999998777789999999 999999999876432 135799999998654 22345999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 261 ~~~~vlh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 261 LFCRILYS--AN--EQLSTIMCKK-AFDAMRSGGRLLILD 295 (359)
T ss_dssp EEESCGGG--SC--HHHHHHHHHH-HHTTCCTTCEEEEEE
T ss_pred EEechhcc--CC--HHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 98654211 11 1112468888 799999999996653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-10 Score=102.80 Aligned_cols=155 Identities=11% Similarity=-0.043 Sum_probs=96.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~~~~~yD~ 178 (297)
.+..+|||||||+|.++..+++. .+|++||+++ ++..+++. +..... ...+++++ .+|++.+ .+++||+
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~ 151 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-PRLVET-FGWNLITFKSKVDVTKM---EPFQADT 151 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-CCCCCC-TTGGGEEEECSCCGGGC---CCCCCSE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-hhhhhh-cCCCeEEEeccCcHhhC---CCCCcCE
Confidence 45779999999999999999986 5899999999 43333221 111000 11278999 8998763 2578999
Q ss_pred EEEcCCCCCCCCCc-cCcccHHHHHHHHcccCCCCc--EEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCcc
Q 022451 179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG--vl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~ 255 (297)
|++|.. .....+. ...-+..+++. +.+.|+||| .+++..-.| .......+++.+++.|..+..+ |.+
T Consensus 152 Vvsd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~~v~~~~~~----~~~~~~~~l~~l~~~f~~v~v~----P~~ 221 (276)
T 2wa2_A 152 VLCDIG-ESNPTAAVEASRTLTVLNV-ISRWLEYNQGCGFCVKVLNP----YSCDVLEALMKMQARFGGGLIR----VPL 221 (276)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHSTTCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEEC----CTT
T ss_pred EEECCC-cCCCchhhhHHHHHHHHHH-HHHHhccCCCcEEEEEeCCC----CchhHHHHHHHHHHHcCCEEEE----cCC
Confidence 999976 2211110 00001136777 789999999 998865333 1122345667788888876543 443
Q ss_pred C---CceeEEEEecCCCCCCcc
Q 022451 256 A---DTWGWIMVSIYNPHSHSI 274 (297)
Q Consensus 256 ~---~~~~~~~as~~~~~~~~i 274 (297)
. ....|+++..+....+.+
T Consensus 222 sR~~s~E~y~v~~~~~~~~~~~ 243 (276)
T 2wa2_A 222 SRNSTHEMYFVSGIKNNIMGNV 243 (276)
T ss_dssp SCTTCCCEEEESSCCCCHHHHH
T ss_pred CCCcchheEEecccCCCcchhH
Confidence 2 234566666655443433
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.1e-10 Score=105.54 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=71.0
Q ss_pred CCCCeEEEEccc------h-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHh-
Q 022451 101 PNPKTIFIMGGG------E-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELE- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G------~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~- 170 (297)
.++.+||+|||| + |.....+.++++..+|++||+++.+. . ..++++++++|+.+ ++.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-------~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-------DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-------CBTTEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-------cCCCcEEEEecccccchhhh
Confidence 568999999999 4 44444444455678999999999972 0 24789999999865 331
Q ss_pred --ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 171 --SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...++||+|++|....+ + . -..+|+. ++++|||||++++..
T Consensus 282 l~~~d~sFDlVisdgsH~~---~--d--~~~aL~e-l~rvLKPGGvlVi~D 324 (419)
T 3sso_A 282 IARRYGPFDIVIDDGSHIN---A--H--VRTSFAA-LFPHVRPGGLYVIED 324 (419)
T ss_dssp HHHHHCCEEEEEECSCCCH---H--H--HHHHHHH-HGGGEEEEEEEEEEC
T ss_pred hhcccCCccEEEECCcccc---h--h--HHHHHHH-HHHhcCCCeEEEEEe
Confidence 12478999999864211 1 1 2468888 799999999999863
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=97.75 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=81.2
Q ss_pred EEEEcCcc-ccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 022451 71 ALVIDGKL-QSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (297)
Q Consensus 71 ~L~ldg~~-q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (297)
.+.++|.. ....+..+-..+++..+ .....+++|||||||+|.++..+++. +..+|++||+++.|++.+.+.
T Consensus 55 ~I~v~g~~~~yvsrg~~Kl~~~l~~~--~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---- 127 (291)
T 3hp7_A 55 ELKLKGEKLRYVSRGGLKLEKALAVF--NLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---- 127 (291)
T ss_dssp CEEETTCCCCSSSTTHHHHHHHHHHT--TCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT----
T ss_pred EEEEcccccccccchHHHHHHHHHhc--CCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh----
Confidence 35566653 23334433333333322 12345789999999999999999886 567999999999999885442
Q ss_pred cCCCCCCCeEEEE-cchHHHHhc---cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 150 KEAFSDPRLELVI-NDARAELES---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 150 ~~~~~~~rv~~~~-~Da~~~l~~---~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++++.... .|++. +.. ....||+|++|..... + ...+.. +++.|+|||.+++-
T Consensus 128 -----~~rv~~~~~~ni~~-l~~~~l~~~~fD~v~~d~sf~s-------l--~~vL~e-~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 128 -----DDRVRSMEQYNFRY-AEPVDFTEGLPSFASIDVSFIS-------L--NLILPA-LAKILVDGGQVVAL 184 (291)
T ss_dssp -----CTTEEEECSCCGGG-CCGGGCTTCCCSEEEECCSSSC-------G--GGTHHH-HHHHSCTTCEEEEE
T ss_pred -----CcccceecccCcee-cchhhCCCCCCCEEEEEeeHhh-------H--HHHHHH-HHHHcCcCCEEEEE
Confidence 35654433 34332 221 1234999999975321 1 356777 79999999998775
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.4e-10 Score=100.71 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=81.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++..+..+++++|++ .+++.|++.+...+ -.++++++.+|..+. ...+.||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG---VASRYHTIAGSAFEV--DYGNDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT---CGGGEEEEESCTTTS--CCCSCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC---CCcceEEEecccccC--CCCCCCcEEE
Confidence 56789999999999999999987677899999999 99999999876432 125799999997653 2234599999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-...++++. +++.|+|||.+++..
T Consensus 238 ~~~~l~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 238 LPNFLHH--FD--VATCEQLLRK-IKTALAVEGKVIVFD 271 (335)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Ecchhcc--CC--HHHHHHHHHH-HHHhCCCCcEEEEEe
Confidence 8543111 01 0112478888 799999999777654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=97.23 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=80.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++...++ -++++++.+|+.+++.. ..++||
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~f~~~d~~~~l~~~~~~~~~fD 358 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD 358 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEECCHHHHhhhhhhhcCCCC
Confidence 45679999999999999999986 5799999999999999999986553 24899999999886532 346799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|++-. .+ .++++. +. .++|++++.+.+
T Consensus 359 ~Vv~dPPr~-------g~--~~~~~~-l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 359 KVLLDPARA-------GA--AGVMQQ-II-KLEPIRIVYVSC 389 (433)
T ss_dssp EEEECCCTT-------CC--HHHHHH-HH-HHCCSEEEEEES
T ss_pred EEEECCCCc-------cH--HHHHHH-HH-hcCCCeEEEEEC
Confidence 999997632 11 256666 43 588999888764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=92.00 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=74.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--------------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-------------- 167 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-------------- 167 (297)
.+++||++|+| ..+..+++.. ..+|+.||.|++..+.|+++|...+.. ...+++++.+|+.+
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~-~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPPA-EGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCCC-TTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCCceEEEEeCchhhhcccccccchhhh
Confidence 67899999984 6777777753 689999999999999999999754310 03689999999643
Q ss_pred ----HHh---c--cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 168 ----ELE---S--RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 168 ----~l~---~--~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.. . ..++||+|++|..- ...++.. +.++|+|||++++-
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-----------~~~~~~~-~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-----------RVGCALA-TAFSITRPVTLLFD 153 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-----------HHHHHHH-HHHHCSSCEEEEET
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-----------chhHHHH-HHHhcCCCeEEEEe
Confidence 221 1 23689999999631 1255565 56899999999763
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=92.93 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=82.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KES 175 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~ 175 (297)
...++.+|||+|||+|+.+..+++. .+..+|+++|+++..++.+++++...+ -.+++++.+|+.++.... ..+
T Consensus 99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~ 174 (309)
T 2b9e_A 99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHE 174 (309)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTT
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCChHhcCccccccCC
Confidence 3456789999999999999998875 345799999999999999999986542 257999999998764321 147
Q ss_pred ceEEEEcCCCCCC----CCCc---------cCc-----ccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 176 YDVIIGDLADPIE----GGPC---------YKL-----YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 176 yD~Ii~D~~~~~~----~~p~---------~~L-----~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
||.|++|++-... ..|. ..+ ...++++. +.+.|+ ||.|+..+++
T Consensus 175 fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 175 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-ALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHH-HTTCTT-CCEEEEEESC
T ss_pred CCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHH-HHhccC-CCEEEEECCC
Confidence 9999999872110 0010 011 11346666 567776 9998877654
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=107.29 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhc--cCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVN--KEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~--~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..+.+|||||||+|.++..+++.. +..+|++||+++.+++.|++.+... ......++++++.+|+.+. ....++||
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFD 798 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVD 798 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCee
Confidence 467899999999999999999875 4479999999999999999866421 1111236899999998764 23457899
Q ss_pred EEEEcCCCCCCCCCccCccc---HHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|++...-. ++.. ..+++. +.+.|+|| .+++.
T Consensus 799 lVV~~eVLe-------HL~dp~l~~~L~e-I~RvLKPG-~LIIS 833 (950)
T 3htx_A 799 IGTCLEVIE-------HMEEDQACEFGEK-VLSLFHPK-LLIVS 833 (950)
T ss_dssp EEEEESCGG-------GSCHHHHHHHHHH-HHHTTCCS-EEEEE
T ss_pred EEEEeCchh-------hCChHHHHHHHHH-HHHHcCCC-EEEEE
Confidence 999964321 2222 247888 79999999 66554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-10 Score=104.03 Aligned_cols=114 Identities=15% Similarity=0.129 Sum_probs=75.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-------------------------C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-------------------------D 155 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-------------------------~ 155 (297)
.++.+|||||||+|..+..++.. +..+|+++|+++.+++.|++++......++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 35678999999999877665554 346899999999999999987643211110 0
Q ss_pred CCeE-EEEcchHHHHh---ccCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEec
Q 022451 156 PRLE-LVINDARAELE---SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 156 ~rv~-~~~~Da~~~l~---~~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+++ ++.+|..+... ...++||+|++...-+.. .+ .+ --...++. +.++|||||.|++..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i-~~--~~~~~~~~l~~-i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA-CC--SLDAYRAALCN-LASLLKPGGHLVTTV 197 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH-CS--SHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh-cC--CHHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 1243 88888766321 124689999997542110 00 00 01357777 789999999998874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=99.94 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=81.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ -.++++++.+|..+.+ ...||+|+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEPL---PRKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSCC---SSCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC---CCCceEEEeCCCCCCC---CCCccEEE
Confidence 4578999999999999999998777779999999 999999999876432 1358999999986533 23599999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 255 ~~~vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 255 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIHE 288 (360)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EcccccC--CC--HHHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 8654211 11 0011368898 799999999888764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=96.37 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC-CHHHHHHHHhhhhhccC---CCC---CCCeEEEEcc---h-HHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI-DEEVVEFCKSYLVVNKE---AFS---DPRLELVIND---A-RAEL 169 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi-d~~vi~~a~~~f~~~~~---~~~---~~rv~~~~~D---a-~~~l 169 (297)
..+++|||||||+|.++..+++. +..+|+++|+ ++.+++.|+++...+.. .+. .++++++..| . ....
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 45689999999999999988886 3469999999 99999999998732210 010 1478888444 2 2222
Q ss_pred hc-cCCCceEEEE-cCCCCCCCCCccCcccHHHHHHHHcccCC---C--CcEEEEec
Q 022451 170 ES-RKESYDVIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLN---P--EGIFVTQA 219 (297)
Q Consensus 170 ~~-~~~~yD~Ii~-D~~~~~~~~p~~~L~t~ef~~~~~~~~L~---p--gGvl~~~~ 219 (297)
.. ..++||+|++ |..... + .-..+++. +++.|+ | ||++++..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~---~----~~~~ll~~-l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH---Q----AHDALLRS-VKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG---G----GHHHHHHH-HHHHBCCTTTCTTCEEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh---H----HHHHHHHH-HHHHhcccCCCCCCEEEEEE
Confidence 11 3578999987 543211 1 13467888 799999 9 99776543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=100.76 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCC-----cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTV-----EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~-----~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+.+|||+|||+|.++..+++..+. .+++++|+|+.++++|+.++...+ .+++++.+|+.... ...+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-----~~~~i~~~D~l~~~--~~~~f 202 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLANL--LVDPV 202 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSCC--CCCCE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-----CCceEEECCCCCcc--ccCCc
Confidence 5679999999999999888875332 689999999999999999876543 25899999976532 34689
Q ss_pred eEEEEcCCCCCCC--------CC--ccC--cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 177 DVIIGDLADPIEG--------GP--CYK--LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 177 D~Ii~D~~~~~~~--------~p--~~~--L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
|+|+++++-.... .+ ... .+...|++. +.+.|+|||++++-+... +........+.+.+.+.+
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~-~~~~Lk~gG~~~~v~p~~--~~~~~~~~~ir~~l~~~~ 277 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLVPDA--MFGTSDFAKVDKFIKKNG 277 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEEEGG--GGGSTTHHHHHHHHHHHE
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHH-HHHHhCCCCEEEEEECch--hcCCchHHHHHHHHHhCC
Confidence 9999998721100 00 001 122368888 789999999988765221 233334466666666543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-10 Score=100.61 Aligned_cols=152 Identities=11% Similarity=-0.072 Sum_probs=93.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~~~~~yD~ 178 (297)
.+..+|||||||+|.++..+++. .+|++||+++ ++..+++. +..... ...++.++ .+|++.+ .+++||+
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~-~~~~~~-~~~~v~~~~~~~D~~~l---~~~~fD~ 143 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV-PRITES-YGWNIVKFKSRVDIHTL---PVERTDV 143 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC-CCCCCB-TTGGGEEEECSCCTTTS---CCCCCSE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh-hhhhhc-cCCCeEEEecccCHhHC---CCCCCcE
Confidence 46789999999999999999886 5899999999 43222211 110000 11268889 8998763 2578999
Q ss_pred EEEcCCCCCCCCCc-cCcccHHHHHHHHcccCCCCc--EEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCc-
Q 022451 179 IIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPS- 254 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG--vl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~- 254 (297)
|++|.. .....+. ...-+..+++. +.+.|+||| .+++..-.| .......++..+++.|..+.... +.
T Consensus 144 V~sd~~-~~~~~~~~d~~~~l~~L~~-~~r~LkpGG~~~fv~kv~~~----~~~~~~~~l~~l~~~f~~v~~~k---~~s 214 (265)
T 2oxt_A 144 IMCDVG-ESSPKWSVESERTIKILEL-LEKWKVKNPSADFVVKVLCP----YSVEVMERLSVMQRKWGGGLVRN---PYS 214 (265)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHH-HHHHHHHCTTCEEEEEESCT----TSHHHHHHHHHHHHHHCCEEECC---TTS
T ss_pred EEEeCc-ccCCccchhHHHHHHHHHH-HHHHhccCCCeEEEEEeCCC----CChhHHHHHHHHHHHcCCEEEEE---ecc
Confidence 999976 2211110 00001136777 789999999 998875333 11223366677888888765432 32
Q ss_pred cC-CceeEEEEecCCCC
Q 022451 255 FA-DTWGWIMVSIYNPH 270 (297)
Q Consensus 255 ~~-~~~~~~~as~~~~~ 270 (297)
.. ..-.|++|..+...
T Consensus 215 R~~s~E~y~v~~~~~~~ 231 (265)
T 2oxt_A 215 RNSTHEMYFTSRAGGNI 231 (265)
T ss_dssp CTTCCCEEEESSCCSCH
T ss_pred cCCCccEEEEecCCCCc
Confidence 22 22356666655543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=99.87 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=80.5
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcC
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~ 183 (297)
.+|||+|||+|..+..+++..|..+++++|+ |.+++.|++.+...+ -.++++++.+|..+. ..+.||+|++..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~---~~~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL---AGERVSLVGGDMLQE---VPSNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH---HTTSEEEEESCTTTC---CCSSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC---CCCcEEEecCCCCCC---CCCCCCEEEEch
Confidence 8999999999999999998777789999999 999999999875322 136899999998662 236799999875
Q ss_pred CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-+. -+ .-....+++. +++.|+|||.+++..
T Consensus 242 vl~~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 242 IIGD--LD--EAASLRLLGN-CREAMAGDGRVVVIE 272 (334)
T ss_dssp CGGG--CC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred hccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 4221 01 0012378888 799999999988774
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=92.72 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=72.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+.+||+||||+|.++..+++. +++|+++.+++.|++. +++++.+|+... ....++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccC-CCCCCCeeEEEEc
Confidence 889999999999999987763 9999999999999974 578889997653 2334689999987
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..-.. .+ . ...+++. +.+.|+|||.+++..
T Consensus 110 ~~l~~--~~--~--~~~~l~~-~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 110 TTICF--VD--D--PERALKE-AYRILKKGGYLIVGI 139 (219)
T ss_dssp SCGGG--SS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred chHhh--cc--C--HHHHHHH-HHHHcCCCcEEEEEE
Confidence 54221 11 1 2478888 799999999998875
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=92.73 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=95.2
Q ss_pred CCCeEEEEccchhHHHHH----HHhcCCCcEEE--EEECCHH---------HHHHHHhhhhhccCCCCCCC--eEEEEcc
Q 022451 102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVV--MCDIDEE---------VVEFCKSYLVVNKEAFSDPR--LELVIND 164 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~----l~~~~~~~~v~--~VEid~~---------vi~~a~~~f~~~~~~~~~~r--v~~~~~D 164 (297)
..-+||++|.|+|..... +.+..+..++. .+|-+|. ..++.+..+.... .+...+ ++++.+|
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p-~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP-EYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS-EEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc-cccCCcEEEEEEech
Confidence 456899999999985432 22333445554 4554321 1222222221100 112344 4688999
Q ss_pred hHHHHhccC-CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 165 ARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 165 a~~~l~~~~-~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
+++.+..-. .++|+|++|.|.|.. . ..|++.++|+. +.++++|||+|++.+.. ..+.+.|+++.=
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~k-N--PeLWs~e~f~~-l~~~~~pgg~laTYtaa----------g~VRR~L~~aGF 240 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYK-N--PELWTLDFLSL-IKERIDEKGYWVSYSSS----------LSVRKSLLTLGF 240 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTT-S--GGGGSHHHHHH-HHTTEEEEEEEEESCCC----------HHHHHHHHHTTC
T ss_pred HHHHHhhhcccceeEEEeCCCCccc-C--cccCCHHHHHH-HHHHhCCCcEEEEEeCc----------HHHHHHHHHCCC
Confidence 999998743 489999999998862 3 48999999999 89999999999987521 356677877744
Q ss_pred ceeEEEEecCccCCceeEEEEecCC
Q 022451 244 YVVPYSAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 244 ~v~~~~~~vp~~~~~~~~~~as~~~ 268 (297)
.|. .+|.++.-...+.|+..+
T Consensus 241 ~V~----k~~G~g~KReml~A~~~~ 261 (308)
T 3vyw_A 241 KVG----SSREIGRKRKGTVASLKA 261 (308)
T ss_dssp EEE----EEECC---CEEEEEESSS
T ss_pred EEE----ecCCCCCCCceeEEecCC
Confidence 443 456676656778888654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=98.20 Aligned_cols=126 Identities=11% Similarity=0.017 Sum_probs=84.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEEC----CHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhccCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEi----d~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~~~~~ 175 (297)
.+..+|||||||+|.++..+++. .+|++||+ ++..++.+ ... ....++++++.+ |+..+ ..++
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~----~~~--~~~~~~v~~~~~~D~~~l---~~~~ 148 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI----PMS--TYGWNLVRLQSGVDVFFI---PPER 148 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC----CCC--STTGGGEEEECSCCTTTS---CCCC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH----Hhh--hcCCCCeEEEeccccccC---CcCC
Confidence 45689999999999999999986 47999999 45332211 101 112367999999 87653 3468
Q ss_pred ceEEEEcCCCCCCCCCccCccc----HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 176 YDVIIGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t----~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
||+|++|..... +. .... ...++. +.+.|+|||.|++..-.+ .......++..+++.|..+..
T Consensus 149 fD~V~sd~~~~~--g~--~~~d~~~~l~~L~~-~~~~LkpGG~~v~kv~~~----~~~~~~~~l~~l~~~f~~v~~ 215 (305)
T 2p41_A 149 CDTLLCDIGESS--PN--PTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP----YMSSVIEKMEALQRKHGGALV 215 (305)
T ss_dssp CSEEEECCCCCC--SS--HHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEE
T ss_pred CCEEEECCcccc--Cc--chhhHHHHHHHHHH-HHHHhCCCCEEEEEeCCC----CCchHHHHHHHHHHHcCCEEE
Confidence 999999975321 11 1111 146777 689999999999875322 123446677778888887653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-09 Score=103.28 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=86.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+.+|||+|||+|.++..++++. +..+|++||+|+.+++.| ++++++.+|...+. ..++||+|
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------~~~~~~~~D~~~~~--~~~~fD~I 102 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLWE--PGEAFDLI 102 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGCC--CSSCEEEE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------------CCCcEEeCChhhcC--ccCCCCEE
Confidence 356799999999999999998753 457999999999998765 36899999987753 24689999
Q ss_pred EEcCCCCCCCC--------Ccc--Cc-------------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHH
Q 022451 180 IGDLADPIEGG--------PCY--KL-------------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN 236 (297)
Q Consensus 180 i~D~~~~~~~~--------p~~--~L-------------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~ 236 (297)
+++++-..... +.. .. ....|++. +.+.|+|||.+++-... .+........+.+
T Consensus 103 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~~G~~~~i~p~--~~l~~~~~~~lr~ 179 (421)
T 2ih2_A 103 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVPA--TWLVLEDFALLRE 179 (421)
T ss_dssp EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEEG--GGGTCGGGHHHHH
T ss_pred EECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHH-HHHHhCCCCEEEEEECh--HHhcCccHHHHHH
Confidence 99986311101 000 00 11267888 78999999999876522 1333334456666
Q ss_pred HHHhhC
Q 022451 237 TLRQVF 242 (297)
Q Consensus 237 ~l~~~F 242 (297)
.+.+..
T Consensus 180 ~l~~~~ 185 (421)
T 2ih2_A 180 FLAREG 185 (421)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 666553
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-10 Score=100.42 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=73.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC------------C-------------
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------------D------------- 155 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------------~------------- 155 (297)
.++.+|||||||+|.++..+... +..+|+++|+++.+++.|++++......+. .
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 36789999999999954433332 356999999999999999986542100000 0
Q ss_pred -CCeEEEEcchHHHHh-----ccCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEe
Q 022451 156 -PRLELVINDARAELE-----SRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 156 -~rv~~~~~Da~~~l~-----~~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..++++..|+.+.+. ..+++||+|++...-.+ .+ ..+ --..+++. ++++|+|||.|++.
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~--~~-~~~~~~~~~l~~-~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VS-PDLASFQRALDH-ITTLLRPGGHLLLI 214 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HC-SSHHHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh--hc-CCHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 125677778776332 12356999998754211 00 001 12468888 79999999999875
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.4e-09 Score=92.41 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred CCCCeEEEEccch--hHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhcc--
Q 022451 101 PNPKTIFIMGGGE--GSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR-- 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~--G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~-- 172 (297)
....+|||||||+ +..+.+++ +..|..+|++||.||.|++.||+.+... ...+++++.+|.++. +...
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~----~~~~~~~v~aD~~~~~~~l~~~~~ 152 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST----PEGRTAYVEADMLDPASILDAPEL 152 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC----SSSEEEEEECCTTCHHHHHTCHHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC----CCCcEEEEEecccChhhhhccccc
Confidence 3457999999996 33344443 3456789999999999999999987532 125799999999775 2111
Q ss_pred CCCce-----EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHH
Q 022451 173 KESYD-----VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (297)
Q Consensus 173 ~~~yD-----~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~ 239 (297)
.+.|| .|++...-++. +. .---...++. +.+.|+|||+|++....+. ...+..+.+...++
T Consensus 153 ~~~~D~~~p~av~~~avLH~l--~d-~~~p~~~l~~-l~~~L~PGG~Lvls~~~~d--~~p~~~~~~~~~~~ 218 (277)
T 3giw_A 153 RDTLDLTRPVALTVIAIVHFV--LD-EDDAVGIVRR-LLEPLPSGSYLAMSIGTAE--FAPQEVGRVAREYA 218 (277)
T ss_dssp HTTCCTTSCCEEEEESCGGGS--CG-GGCHHHHHHH-HHTTSCTTCEEEEEEECCT--TSHHHHHHHHHHHH
T ss_pred ccccCcCCcchHHhhhhHhcC--Cc-hhhHHHHHHH-HHHhCCCCcEEEEEeccCC--CCHHHHHHHHHHHH
Confidence 23455 45565543331 10 0001367888 7999999999998864331 22333444444444
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-08 Score=91.82 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|||||||+|.++..+++.+|..++++.|+ |.+++.|++++... ..+|++++.+|.++ .....+|+|+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~----~~~rv~~~~gD~~~---~~~~~~D~~~ 249 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ----EEEQIDFQEGDFFK---DPLPEADLYI 249 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------CCSEEEEESCTTT---SCCCCCSEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc----ccCceeeecCcccc---CCCCCceEEE
Confidence 3467999999999999999999888889999998 99999999987643 24799999999643 3445689998
Q ss_pred EcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..- .| + .-....+++. +++.|+|||.+++..
T Consensus 250 ~~~vlh~~---~--d~~~~~iL~~-~~~al~pgg~lli~e 283 (353)
T 4a6d_A 250 LARVLHDW---A--DGKCSHLLER-IYHTCKPGGGILVIE 283 (353)
T ss_dssp EESSGGGS---C--HHHHHHHHHH-HHHHCCTTCEEEEEE
T ss_pred eeeecccC---C--HHHHHHHHHH-HHhhCCCCCEEEEEE
Confidence 86442 22 1 0012367888 799999999887764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-09 Score=102.57 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=73.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++. ... ....++..+....+...+++||+|+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~------~~~~~~~~~~~~~l~~~~~~fD~I~ 176 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIR------VRTDFFEKATADDVRRTEGPANVIY 176 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCC------EECSCCSHHHHHHHHHHHCCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCC------cceeeechhhHhhcccCCCCEEEEE
Confidence 45779999999999999999986 35899999999999999986 111 1111222232333433457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+ --..+++. ++++|+|||++++..
T Consensus 177 ~~~vl~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 177 AANTLCH--IP----YVQSVLEG-VDALLAPDGVFVFED 208 (416)
T ss_dssp EESCGGG--CT----THHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ECChHHh--cC----CHHHHHHH-HHHHcCCCeEEEEEe
Confidence 9765322 11 12478999 899999999999874
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.8e-09 Score=92.11 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=68.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCC-Cce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKE-SYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~-~yD 177 (297)
..+++|||||||+|.++..+++. +..+|++||+++.+++.|++.. +++......-..++. .... .||
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d 105 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD---------ERVVVMEQFNFRNAVLADFEQGRPS 105 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC---------TTEEEECSCCGGGCCGGGCCSCCCS
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC---------ccccccccceEEEeCHhHcCcCCCC
Confidence 45679999999999999999987 4569999999999999987742 343332221122221 1122 378
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.+..|..-. .+ ..+++. +++.|+|||.+++.
T Consensus 106 ~~~~D~v~~-------~l--~~~l~~-i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 106 FTSIDVSFI-------SL--DLILPP-LYEILEKNGEVAAL 136 (232)
T ss_dssp EEEECCSSS-------CG--GGTHHH-HHHHSCTTCEEEEE
T ss_pred EEEEEEEhh-------hH--HHHHHH-HHHhccCCCEEEEE
Confidence 887776421 11 467888 79999999998875
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=91.12 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcc------chhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHHhc
Q 022451 100 HPNPKTIFIMGG------GEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~------G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~-~~~Da~~~l~~ 171 (297)
.+++.+|||||| |.|+ ..+++..+ ..+|++||+++. + +++++ +.+|+.+.-
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---------~~v~~~i~gD~~~~~-- 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---------SDADSTLIGDCATVH-- 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---------CSSSEEEESCGGGCC--
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---------CCCEEEEECccccCC--
Confidence 356779999999 5577 33343333 579999999998 1 35778 999987642
Q ss_pred cCCCceEEEEcCCCCCCC-----CC-ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCc
Q 022451 172 RKESYDVIIGDLADPIEG-----GP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKY 244 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~-----~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~ 244 (297)
..++||+|++|...+... .. ...+ -.+.++. +.+.|+|||.|++..-.. .....+...+++. |..
T Consensus 120 ~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l-~~~~l~~-a~r~LkpGG~~v~~~~~~------~~~~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 120 TANKWDLIISDMYDPRTKHVTKENDSKEGF-FTYLCGF-IKQKLALGGSIAVKITEH------SWNADLYKLMGHFSWWT 191 (290)
T ss_dssp CSSCEEEEEECCCCCC---CCSCCCCCCTH-HHHHHHH-HHHHEEEEEEEEEEECSS------SCCHHHHHHHTTEEEEE
T ss_pred ccCcccEEEEcCCccccccccccccchHHH-HHHHHHH-HHHhcCCCcEEEEEEecc------CCHHHHHHHHHHcCCcE
Confidence 236799999997533210 00 0112 2467888 799999999999864211 1124666777776 766
Q ss_pred eeEE
Q 022451 245 VVPY 248 (297)
Q Consensus 245 v~~~ 248 (297)
+...
T Consensus 192 v~~~ 195 (290)
T 2xyq_A 192 AFVT 195 (290)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.3e-09 Score=95.48 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=75.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+...+|||||||+|..+..+++..+..+++++|+ +.++. ++...... ..+|++++.+|..+. .+ .||+|+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~---~~~~v~~~~~d~~~~---~p-~~D~v~ 252 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD---VAGRWKVVEGDFLRE---VP-HADVHV 252 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG---GTTSEEEEECCTTTC---CC-CCSEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC---CCCCeEEEecCCCCC---CC-CCcEEE
Confidence 5678999999999999999998777889999999 55555 44332211 236899999998632 23 899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 253 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 253 LKRILHN--WG--DEDSVRILTN-CRRVMPAHGRVLVID 286 (348)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHTCCTTCEEEEEE
T ss_pred EehhccC--CC--HHHHHHHHHH-HHHhcCCCCEEEEEE
Confidence 8754221 11 1111478898 799999999998764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=91.70 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCCeEEEEccchhH----HHHHHHhcCC----CcEEEEEECCHHHHHHHHhhhh-hcc----------------CCCCC-
Q 022451 102 NPKTIFIMGGGEGS----TAREILRHKT----VEKVVMCDIDEEVVEFCKSYLV-VNK----------------EAFSD- 155 (297)
Q Consensus 102 ~~~~VL~iG~G~G~----~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~f~-~~~----------------~~~~~- 155 (297)
.+.+||++|||+|. ++..+.+..+ ..+|+++|+|+.+++.|++... ... ....+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5555555422 3589999999999999998631 000 00001
Q ss_pred ---------CCeEEEEcchHHH-HhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 156 ---------PRLELVINDARAE-LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 156 ---------~rv~~~~~Da~~~-l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|++...|..+. + ...++||+|++-..-... .+ -.....++. +.+.|+|||.|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~-~~~~~fDlI~crnvliyf-~~---~~~~~vl~~-~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQY-NVPGPFDAIFCRNVMIYF-DK---TTQEDILRR-FVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSC-CCCCCEEEEEECSSGGGS-CH---HHHHHHHHH-HGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCC-CcCCCeeEEEECCchHhC-CH---HHHHHHHHH-HHHHhCCCcEEEEEe
Confidence 3689999997651 1 113689999995321100 00 012467888 799999999999853
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-08 Score=90.14 Aligned_cols=79 Identities=29% Similarity=0.347 Sum_probs=65.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhccC-CCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~~-~~y 176 (297)
.++.+|||+|||+|+.+..+++..+..+|+++|+|+.+++.|++++...+ ++++++++|+.+. +.... .+|
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-----~~v~~v~~d~~~l~~~l~~~g~~~~ 99 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----DRVSLFKVSYREADFLLKTLGIEKV 99 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----TTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCHHHHHHHHHhcCCCCC
Confidence 46789999999999999999987656799999999999999999876442 6899999998664 22211 579
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|++|+.
T Consensus 100 D~Vl~D~g 107 (301)
T 1m6y_A 100 DGILMDLG 107 (301)
T ss_dssp EEEEEECS
T ss_pred CEEEEcCc
Confidence 99999985
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=96.30 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=65.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
.+.+|||+|||+|..+..+++. ..+|++||+|+.+++.|++++...... -.+++++.+|+.+++.. ..++||+|+
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~g--l~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNE--GKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCT--TCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccC--CCcEEEEECcHHHhhhhccCCCceEEE
Confidence 4789999999999999988875 469999999999999999998744101 15799999999988754 235799999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
+|++
T Consensus 169 lDPP 172 (410)
T 3ll7_A 169 VDPA 172 (410)
T ss_dssp ECCE
T ss_pred ECCC
Confidence 9987
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-08 Score=89.83 Aligned_cols=76 Identities=18% Similarity=0.380 Sum_probs=62.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++. ..+|++||+|+.+++.+++.+.... ..++++++.+|+.++ .-..||+|+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~D~~~~---~~~~fD~vv 98 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTCV 98 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEEE
T ss_pred CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcceecc---cchhhcEEE
Confidence 46789999999999999999986 3589999999999999999875321 125899999998654 224799999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
++++
T Consensus 99 ~nlp 102 (285)
T 1zq9_A 99 ANLP 102 (285)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=98.30 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
.+|.+|||||||+|.++..+++. ..+|++||+++.+++.||.+....+ .-+++++++|+.+.... .+++||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENP----DFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTST----TSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcC----CCceEEEECCHHHHhhhccCCCccEE
Confidence 56789999999999999999986 4689999999999999999875432 23689999999887654 45789999
Q ss_pred EEcC
Q 022451 180 IGDL 183 (297)
Q Consensus 180 i~D~ 183 (297)
++--
T Consensus 139 ~~~e 142 (569)
T 4azs_A 139 IGLS 142 (569)
T ss_dssp EEES
T ss_pred EECc
Confidence 9864
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=95.51 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=74.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .++++++.+|..+.+ . +. |+|+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~~--p-~~-D~v~ 266 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----------FSGVEHLGGDMFDGV--P-KG-DAIF 266 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTCC--C-CC-SEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----------cCCCEEEecCCCCCC--C-CC-CEEE
Confidence 3468999999999999999998777889999999 999877664 268999999986522 2 23 9998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+ .-....+++. +++.|+|||.+++..
T Consensus 267 ~~~vlh~--~~--~~~~~~~l~~-~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 267 IKWICHD--WS--DEHCLKLLKN-CYAALPDHGKVIVAE 300 (368)
T ss_dssp EESCGGG--BC--HHHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred Eechhhc--CC--HHHHHHHHHH-HHHHcCCCCEEEEEE
Confidence 8754221 01 0012367888 799999999988764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=91.53 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=64.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCH-------HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-C
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE-------EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K 173 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~-------~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~ 173 (297)
.+.+|||+|||+|..+..+++. ..+|+++|+++ .+++.|+++...++. ..+++++.+|+.+++... +
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~---~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT---AARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH---HTTEEEEESCHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC---ccCeEEEECCHHHHHHhhhc
Confidence 4579999999999999999985 46899999999 999999988654321 246999999999987642 2
Q ss_pred --CCceEEEEcCCCC
Q 022451 174 --ESYDVIIGDLADP 186 (297)
Q Consensus 174 --~~yD~Ii~D~~~~ 186 (297)
++||+|++|++-+
T Consensus 158 ~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHCCCSEEEECCCC-
T ss_pred cCCCccEEEECCCCC
Confidence 6899999998643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=95.40 Aligned_cols=98 Identities=20% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|..+..+++..+..+++++|+ |.+++.|+++ ++++++.+|..+. .+. ||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------SGIEHVGGDMFAS---VPQ-GDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------TTEEEEECCTTTC---CCC-EEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------CCCEEEeCCcccC---CCC-CCEEE
Confidence 4578999999999999999998777788999999 9998877642 5799999998652 223 99999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...-+. .+ ......+++. +++.|+|||.+++.
T Consensus 273 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 273 LKAVCHN--WS--DEKCIEFLSN-CHKALSPNGKVIIV 305 (372)
T ss_dssp EESSGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred Eeccccc--CC--HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 8754221 11 1112378898 79999999998876
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=90.73 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=63.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+..+||+||||+|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++- -....||+|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~------~~~v~vi~gD~l~~~-~~~~~fD~I 118 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL------YNNIEIIWGDALKVD-LNKLDFNKV 118 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH------CSSEEEEESCTTTSC-GGGSCCSEE
T ss_pred CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc------CCCeEEEECchhhCC-cccCCccEE
Confidence 346779999999999999999986 47999999999999999998762 268999999987642 123469999
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
+.+++
T Consensus 119 v~NlP 123 (295)
T 3gru_A 119 VANLP 123 (295)
T ss_dssp EEECC
T ss_pred EEeCc
Confidence 98865
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-08 Score=93.34 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=75.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.+.+|||||||+|..+..+++..|..+++++|+ |.+++.|+++ ++++++.+|..+.+ + .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~---p-~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------NNLTYVGGDMFTSI---P-NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------TTEEEEECCTTTCC---C-CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------CCcEEEeccccCCC---C-CccEEE
Confidence 4568999999999999999998777789999999 9999887752 45999999976522 2 499999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCC---CcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p---gGvl~~~~ 219 (297)
+...-+. .+ ......+++. +++.|+| ||.+++..
T Consensus 252 ~~~~lh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 252 LKYILHN--WT--DKDCLRILKK-CKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHHSGGGCCCEEEEEE
T ss_pred eehhhcc--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEEE
Confidence 8754221 11 1112378898 7999999 99887764
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.1e-09 Score=91.58 Aligned_cols=105 Identities=21% Similarity=0.130 Sum_probs=79.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.|.+|||||||.|-++..+....+..+++++|+|+.+++++++++...+ .+.++.+.|...- ....+||+|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~D~~~~--~p~~~~DvaL 203 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVADLLED--RLDEPADVTL 203 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEECCTTTS--CCCSCCSEEE
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEeeeccc--CCCCCcchHH
Confidence 66899999999999999998887788999999999999999999987653 5588888985332 2467899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...-|.- ..--....| . +.+.|+++|+++-.
T Consensus 204 ~lkti~~L----e~q~kg~g~-~-ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 204 LLKTLPCL----ETQQRGSGW-E-VIDIVNSPNIVVTF 235 (281)
T ss_dssp ETTCHHHH----HHHSTTHHH-H-HHHHSSCSEEEEEE
T ss_pred HHHHHHHh----hhhhhHHHH-H-HHHHhCCCCEEEec
Confidence 88652210 000011344 4 56899999988644
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-08 Score=84.26 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=82.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+. .+++++|+++. +++++.+|+.+ +....++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------------~~~~~~~d~~~-~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------------DPRVTVCDMAQ-VPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------------STTEEESCTTS-CSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------------CceEEEecccc-CCCCCCCEeEEE
Confidence 456899999999999988762 57999999987 24567778765 223356899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCce
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTW 259 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~ 259 (297)
+...-+. + -...+++. +.+.|+|||.+++...... .. ....+.+.+++. |..+. ....+..+
T Consensus 121 ~~~~l~~---~----~~~~~l~~-~~~~L~~gG~l~i~~~~~~-~~---~~~~~~~~l~~~Gf~~~~-----~~~~~~~~ 183 (215)
T 2zfu_A 121 FCLSLMG---T----NIRDFLEE-ANRVLKPGGLLKVAEVSSR-FE---DVRTFLRAVTKLGFKIVS-----KDLTNSHF 183 (215)
T ss_dssp EESCCCS---S----CHHHHHHH-HHHHEEEEEEEEEEECGGG-CS---CHHHHHHHHHHTTEEEEE-----EECCSTTC
T ss_pred Eehhccc---c----CHHHHHHH-HHHhCCCCeEEEEEEcCCC-CC---CHHHHHHHHHHCCCEEEE-----EecCCCeE
Confidence 8754322 1 12478888 7999999999988642110 11 234555666654 44332 11123345
Q ss_pred eEEEEecCCCC
Q 022451 260 GWIMVSIYNPH 270 (297)
Q Consensus 260 ~~~~as~~~~~ 270 (297)
.++.+.|....
T Consensus 184 ~~~~~~k~~~~ 194 (215)
T 2zfu_A 184 FLFDFQKTGPP 194 (215)
T ss_dssp EEEEEEECSSC
T ss_pred EEEEEEecCcc
Confidence 66666665433
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=94.73 Aligned_cols=99 Identities=21% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .++++++.+|..+-+ . +. |+|+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~~--p-~~-D~v~ 264 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----------FPGVTHVGGDMFKEV--P-SG-DTIL 264 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----------CTTEEEEECCTTTCC--C-CC-SEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----------cCCeEEEeCCcCCCC--C-CC-CEEE
Confidence 4568999999999999999998777889999999 998877664 268999999986522 2 23 9998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. .+. -....+++. +++.|+|||.+++..
T Consensus 265 ~~~vlh~--~~d--~~~~~~L~~-~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 265 MKWILHD--WSD--QHCATLLKN-CYDALPAHGKVVLVQ 298 (364)
T ss_dssp EESCGGG--SCH--HHHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred ehHHhcc--CCH--HHHHHHHHH-HHHHcCCCCEEEEEE
Confidence 8654221 010 012367888 799999999998764
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.7e-08 Score=87.27 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=71.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+. +|||||||+|.++..+++.. .+|++||+|+++++.+++.+. +.+++++++|+.++-......+|.|+
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~~~~~~~iv 115 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEEVPQGSLLV 115 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGGSCTTEEEE
T ss_pred CCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhhccCccEEE
Confidence 345 99999999999999999863 689999999999999999764 25899999998775222223689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.+++-.. -+.-+++. +....-+.+++.++
T Consensus 116 ~NlPy~i--------ss~il~~l-l~~~~~~~~~lm~Q 144 (271)
T 3fut_A 116 ANLPYHI--------ATPLVTRL-LKTGRFARLVFLVQ 144 (271)
T ss_dssp EEECSSC--------CHHHHHHH-HHHCCEEEEEEEEE
T ss_pred ecCcccc--------cHHHHHHH-hcCCCCCEEEEEee
Confidence 9975322 22233443 33322246677777
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=87.83 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=61.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hhcc--CCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR--KESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~--~~~y 176 (297)
..++.+|||||||+|.++..+++.. .+|++||+|+.+++.+++.+.. .++++++.+|+.++ +... .++|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~ 98 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSVKTDKPL 98 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHhccCCCe
Confidence 3467899999999999999999863 7999999999999999998753 36899999999775 3221 3568
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
| |+.+++
T Consensus 99 ~-vv~NlP 105 (255)
T 3tqs_A 99 R-VVGNLP 105 (255)
T ss_dssp E-EEEECC
T ss_pred E-EEecCC
Confidence 8 777764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-08 Score=84.22 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=59.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+|++||+|+.+++.+++++.. .++++++.+|+.++-......| .|+
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~~-~vv 99 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKFPKNQSY-KIF 99 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCCCSSCCC-EEE
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc------CCCeEEEEChHHhCCcccCCCe-EEE
Confidence 456799999999999999999874 7899999999999999998642 2689999999876522112345 577
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
++++
T Consensus 100 ~nlP 103 (244)
T 1qam_A 100 GNIP 103 (244)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.5e-08 Score=90.28 Aligned_cols=111 Identities=12% Similarity=-0.031 Sum_probs=77.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC--------------------------------------CcEEEEEECCHHHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC 142 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a 142 (297)
.....+||.+||+|+++.+++.... ..+|+++|+|+.+++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 4567899999999999988875321 14699999999999999
Q ss_pred HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCC--CcEEEEec
Q 022451 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA 219 (297)
Q Consensus 143 ~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGvl~~~~ 219 (297)
+++....+ -..+++++.+|+.++.. ..+||+|++|++-...-+.... -.++|+. +.+.|++ ||.+.+-+
T Consensus 273 r~Na~~~g---l~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~~~~--l~~ly~~-lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 273 RKNAREVG---LEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLDDKA--VDILYNE-MGETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHHHHTT---CTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSCHHH--HHHHHHH-HHHHHTTCTTSEEEEEE
T ss_pred HHHHHHcC---CCCceEEEECChHHCCc--cCCcCEEEECCchhhccCCHHH--HHHHHHH-HHHHHhhCCCcEEEEEE
Confidence 99986543 13579999999987532 3589999999874321111011 1345555 4444444 88777665
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=87.76 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=76.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC--------------------------------------CcEEEEEECCHHHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC 142 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a 142 (297)
.....|||.+||+|+++.+++.... ..+|+++|+|+.+++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 4567899999999999888775321 14699999999999999
Q ss_pred HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCC--CCcEEEEec
Q 022451 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN--PEGIFVTQA 219 (297)
Q Consensus 143 ~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~--pgGvl~~~~ 219 (297)
+++....+ -+.+++++.+|+.++.. ..+||+|++|++-....+.... -.++|+. +.+.|+ +||.+.+-+
T Consensus 280 r~Na~~~g---l~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~~~~--l~~ly~~-lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 280 KQNAVEAG---LGDLITFRQLQVADFQT--EDEYGVVVANPPYGERLEDEEA--VRQLYRE-MGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHTT---CTTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHHHHH--HHHHHHH-HHHHHHTCTTCEEEEEE
T ss_pred HHHHHHcC---CCCceEEEECChHhCCC--CCCCCEEEECCCCccccCCchh--HHHHHHH-HHHHHhcCCCCEEEEEE
Confidence 99987543 13579999999987532 3589999999873221000001 1235554 444444 488776654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-08 Score=86.56 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.|.+|||||||.|.++..+. +..+++++|||+.+++.+++++... .++.++.+.|...- ....+||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~--~~~~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCA--PPAEAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTS--CCCCBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccC--CCCCCcchHH
Confidence 678999999999999998877 5789999999999999999997654 37789999996433 2456899998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...-|.- .+.-....++ +.+.|+++|+++-.
T Consensus 174 llk~lh~L----E~q~~~~~~~--ll~aL~~~~vvVsf 205 (253)
T 3frh_A 174 IFKLLPLL----EREQAGSAMA--LLQSLNTPRMAVSF 205 (253)
T ss_dssp EESCHHHH----HHHSTTHHHH--HHHHCBCSEEEEEE
T ss_pred HHHHHHHh----hhhchhhHHH--HHHHhcCCCEEEEc
Confidence 77542110 0111113443 45699999988643
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-08 Score=94.33 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC-------------CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK-------------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~-------------~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~ 167 (297)
....+|||.|||+|+++..+.++. ...+++++|+|+.++++|+.++...+. ...+++++++|+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~--~~~~~~i~~gD~l~ 247 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI--GTDRSPIVCEDSLE 247 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC--CSSCCSEEECCTTT
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC--CcCCCCEeeCCCCC
Confidence 345699999999999988877641 235799999999999999998765431 11267899999755
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccC-----------cccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYK-----------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~-----------L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ...+||+|+.++|-......... -....|++. +.+.|+|||.+++-.
T Consensus 248 ~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 248 KE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVL 307 (445)
T ss_dssp SC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred Cc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHH-HHHHhccCCEEEEEE
Confidence 32 23489999999873211000000 012478998 789999999887654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-08 Score=86.85 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=65.0
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--CCCCC---CCeEEEEcchHHHHhccCCCceE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSD---PRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~~---~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+|||+|||.|..+..+++. ..+|++||+++.+.+++++.+.... ...+. .|++++.+|+.++++...++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 79999999999999999986 3579999999999888887764211 01111 57999999999998765557999
Q ss_pred EEEcCCCCC
Q 022451 179 IIGDLADPI 187 (297)
Q Consensus 179 Ii~D~~~~~ 187 (297)
|++|++-+.
T Consensus 168 V~lDP~y~~ 176 (258)
T 2oyr_A 168 VYLDPMFPH 176 (258)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCCC
Confidence 999987543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-07 Score=84.41 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=89.6
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--CCCCCCCeEEEEcchHHHHhccCCC
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPRLELVINDARAELESRKES 175 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
+...++.+|||+++|.|+=+.+++.......|+++|+++.-++..++++.... ......++.+...|++.+-....++
T Consensus 144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~ 223 (359)
T 4fzv_A 144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT 223 (359)
T ss_dssp HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence 34456789999999999988888887666789999999999998888775321 1112357999999999886656688
Q ss_pred ceEEEEcCCCCC------CCCCcc-C---------c--ccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 176 YDVIIGDLADPI------EGGPCY-K---------L--YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 176 yD~Ii~D~~~~~------~~~p~~-~---------L--~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
||.|++|++=.. ...|.. . | ...+.+.. +.+.|+|||+|+-.+++.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAA-GLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHH-HHHTEEEEEEEEEEESCC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCC
Confidence 999999998211 001100 0 0 12456666 678999999998887654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-08 Score=92.11 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC--------------------------------------CcEEEEEECCHHHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT--------------------------------------VEKVVMCDIDEEVVEFC 142 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~--------------------------------------~~~v~~VEid~~vi~~a 142 (297)
....+|||.|||+|+++.+++.... ..+|+++|+|+.+++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4567899999999999988875411 14799999999999999
Q ss_pred HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCC--CcEEEEec
Q 022451 143 KSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQA 219 (297)
Q Consensus 143 ~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p--gGvl~~~~ 219 (297)
+++....+ -+.++++..+|+.++.. ..+||+|++|++-...-+.... -.++|+. +.+.|++ ||.+.+-+
T Consensus 274 r~Na~~~g---l~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~~~~--l~~ly~~-lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 274 RENAEIAG---VDEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLEDKDS--VKQLYKE-LGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHT---CGGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHHHHH--HHHHHHH-HHHHHHTSBSCEEEEEE
T ss_pred HHHHHHcC---CCCceEEEECChhhcCc--CCCCcEEEECCCCcCccCCHHH--HHHHHHH-HHHHHhhCCCCEEEEEE
Confidence 99987543 12479999999887542 4589999999873221010001 1245555 4445544 77666654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-08 Score=91.69 Aligned_cols=163 Identities=12% Similarity=0.024 Sum_probs=100.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|||||||.|++++.+++..+..++.++++.-++. ..+...... +.++..+.+|. +...-...+||+|+
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~-----~~pi~~~~~-g~~ii~~~~~~-dv~~l~~~~~DlVl 145 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH-----EKPMNVQSL-GWNIITFKDKT-DIHRLEPVKCDTLL 145 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC-----CCCCCCCBT-TGGGEEEECSC-CTTTSCCCCCSEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc-----ccccccCcC-CCCeEEEeccc-eehhcCCCCccEEE
Confidence 456789999999999999998876677888998874431 001110000 12334444443 11122357899999
Q ss_pred EcCCCCCCCCCc-cCcccHHHHHHHHcccCCCC-cEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecC-ccC-
Q 022451 181 GDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-SFA- 256 (297)
Q Consensus 181 ~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg-Gvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp-~~~- 256 (297)
+|.... ...+. ....+...++. +.+.|+|| |.|++..-.| -.+....++..|++.|..|..+. | |..
T Consensus 146 sD~apn-sG~~~~D~~rs~~LL~~-a~~~LkpG~G~FV~KVf~p----yg~~~~~l~~~lk~~F~~V~~~K---PaSR~~ 216 (277)
T 3evf_A 146 CDIGES-SSSSVTEGERTVRVLDT-VEKWLACGVDNFCVKVLAP----YMPDVLEKLELLQRRFGGTVIRN---PLSRNS 216 (277)
T ss_dssp ECCCCC-CSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEEECC---TTSCTT
T ss_pred ecCccC-cCchHHHHHHHHHHHHH-HHHHhCCCCCeEEEEecCC----CCccHHHHHHHHHHhcCCEEEEe---CCCCCC
Confidence 998633 21110 11122234566 68999999 9999975322 15667889999999999987554 4 222
Q ss_pred CceeEEEEecCCCCCCccccccc
Q 022451 257 DTWGWIMVSIYNPHSHSILSLSY 279 (297)
Q Consensus 257 ~~~~~~~as~~~~~~~~i~~~~~ 279 (297)
..-.|++|..+.+..+.++.+++
T Consensus 217 S~E~Y~V~~~r~n~~~~v~~~s~ 239 (277)
T 3evf_A 217 THEMYYVSGARSNVTFTVNQTSR 239 (277)
T ss_dssp CCCEEEESSCCCCHHHHHHHHHH
T ss_pred CCceEEEEecCCCccchHHHHHH
Confidence 22367777777666555555543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.7e-08 Score=87.84 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=58.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++. ..+|++||+|+.+++.|++++...+ .++++++.+|+..+ ...+||+|+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~----~~~v~~~~~D~~~~---~~~~~D~Vv 111 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEG----YNNLEVYEGDAIKT---VFPKFDVCT 111 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTT----CCCEEC----CCSS---CCCCCSEEE
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcC----CCceEEEECchhhC---CcccCCEEE
Confidence 46789999999999999999986 4699999999999999999875432 26899999998654 235799999
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
++++
T Consensus 112 ~n~p 115 (299)
T 2h1r_A 112 ANIP 115 (299)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.9e-08 Score=89.54 Aligned_cols=98 Identities=16% Similarity=0.122 Sum_probs=74.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||||||+|.++..+++..+..+++++|+ |.+++.|++ .++++++.+|..+- . ..||+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~-~~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----------NENLNFVGGDMFKS---I-PSADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----------CSSEEEEECCTTTC---C-CCCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----------CCCcEEEeCccCCC---C-CCceEEEE
Confidence 568999999999999999998777789999999 888876664 14699999997651 2 25999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCC---CcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNP---EGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p---gGvl~~~~ 219 (297)
...-+. .+ .-....+++. +++.|+| ||.+++..
T Consensus 258 ~~vlh~--~~--d~~~~~~l~~-~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 258 KWVLHD--WN--DEQSLKILKN-SKEAISHKGKDGKVIIID 293 (358)
T ss_dssp ESCGGG--SC--HHHHHHHHHH-HHHHTGGGGGGCEEEEEE
T ss_pred cccccC--CC--HHHHHHHHHH-HHHhCCCCCCCcEEEEEE
Confidence 754221 11 1112378888 7999999 99887753
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=5e-07 Score=80.00 Aligned_cols=100 Identities=27% Similarity=0.400 Sum_probs=70.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~~yD~I 179 (297)
.++.+|||||||+|.++..+++. +..+|++||+|+.+++.++++ . .++++++.+|+.++ +......| .|
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~-------~~~v~~i~~D~~~~~~~~~~~~~-~v 99 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G-------DERLEVINEDASKFPFCSLGKEL-KV 99 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C-------CTTEEEECSCTTTCCGGGSCSSE-EE
T ss_pred CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c-------CCCeEEEEcchhhCChhHccCCc-EE
Confidence 46789999999999999999986 457999999999999999986 2 26899999998765 22211234 78
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcc-cCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGvl~~~~ 219 (297)
+.+++- ...+.-+++. +.. ..-+.++++++.
T Consensus 100 v~NlPy--------~i~~~il~~l-l~~~~~~~~~~~m~Qk 131 (249)
T 3ftd_A 100 VGNLPY--------NVASLIIENT-VYNKDCVPLAVFMVQK 131 (249)
T ss_dssp EEECCT--------TTHHHHHHHH-HHTGGGCSEEEEEEEH
T ss_pred EEECch--------hccHHHHHHH-HhcCCCCceEEEEEeH
Confidence 888753 2223333443 332 234567777763
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.4e-07 Score=82.25 Aligned_cols=125 Identities=12% Similarity=0.124 Sum_probs=93.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~ 178 (297)
++..+|++=+|+|.++.++++ +..+++.||.++...+..++++.. +++++++..|+..+++. ...+||+
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 467799999999999999998 348999999999999999998853 37899999999998874 3457999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHH--cccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
|++|++-.. ...+. ..++. + ...+.|+|+++++. | ....+....+.+.+++.-..+
T Consensus 163 VfiDPPYe~-----k~~~~-~vl~~-L~~~~~r~~~Gi~v~WY--P--i~~~~~~~~~~~~l~~~~~~~ 220 (283)
T 2oo3_A 163 IFIDPSYER-----KEEYK-EIPYA-IKNAYSKFSTGLYCVWY--P--VVNKAWTEQFLRKMREISSKS 220 (283)
T ss_dssp EEECCCCCS-----TTHHH-HHHHH-HHHHHHHCTTSEEEEEE--E--ESSHHHHHHHHHHHHHHCSSE
T ss_pred EEECCCCCC-----CcHHH-HHHHH-HHHhCccCCCeEEEEEE--e--ccchHHHHHHHHHHHhcCCCe
Confidence 999986321 11222 22222 2 25788999999985 3 345566778888887654333
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=88.72 Aligned_cols=138 Identities=11% Similarity=0.037 Sum_probs=92.4
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~~y 176 (297)
...+|||.+||+|+++..+.++ .+..++.++|+|+.+.++|+.++...+. ..++++++.+|.... -.....+|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV--PIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC--CcCccceEecceecccccccccccc
Confidence 4679999999999998777765 2357899999999999999998765431 225789999997543 11235689
Q ss_pred eEEEEcCCCC--CCCC---------------CccCcccHHHHHHHHcccCC-CCcEEEEecCCCCCcCCchHHHHHHHHH
Q 022451 177 DVIIGDLADP--IEGG---------------PCYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (297)
Q Consensus 177 D~Ii~D~~~~--~~~~---------------p~~~L~t~ef~~~~~~~~L~-pgGvl~~~~~~p~~~~~~~~~~~i~~~l 238 (297)
|+|+.++|-. +... |...-....|++. +.+.|+ |||.+++-+.. +..........+++.+
T Consensus 299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~-~l~~Lk~~gGr~a~VlP~-g~Lf~~~~~~~iRk~L 376 (542)
T 3lkd_A 299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLH-GYYHLKQDNGVMAIVLPH-GVLFRGNAEGTIRKAL 376 (542)
T ss_dssp SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHH-HHHTBCTTTCEEEEEEET-HHHHCCTHHHHHHHHH
T ss_pred cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHH-HHHHhCCCceeEEEEecc-hHhhCCchhHHHHHHH
Confidence 9999998731 2100 0001112358898 789999 99988765421 1111223346677777
Q ss_pred HhhCC
Q 022451 239 RQVFK 243 (297)
Q Consensus 239 ~~~F~ 243 (297)
-+.+.
T Consensus 377 le~~~ 381 (542)
T 3lkd_A 377 LEEGA 381 (542)
T ss_dssp HHTTC
T ss_pred HhCCc
Confidence 66554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=90.19 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=89.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCC---------------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKT---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA 165 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~---------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da 165 (297)
+.+.+|||.+||+|+++..+.++.. ..++.++|+|+.++++|+.++...+. +.++.++.+|.
T Consensus 243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi---~~~i~i~~gDt 319 (544)
T 3khk_A 243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI---DFNFGKKNADS 319 (544)
T ss_dssp CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC---CCBCCSSSCCT
T ss_pred cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC---Ccccceeccch
Confidence 4455999999999999877654311 35899999999999999998765531 23455588886
Q ss_pred HHHHhccCCCceEEEEcCCCC---CCC--------------------CCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 166 RAELESRKESYDVIIGDLADP---IEG--------------------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~---~~~--------------------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
...-.....+||+|+.++|-. +.. .|...-....|++. +.+.|+|||.+++-+..
T Consensus 320 L~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~aiVlP~- 397 (544)
T 3khk_A 320 FLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH-MLYHLAPTGSMALLLAN- 397 (544)
T ss_dssp TTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH-HHHTEEEEEEEEEEEET-
T ss_pred hcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH-HHHHhccCceEEEEecc-
Confidence 443222346899999998732 110 11111112368898 78999999998766411
Q ss_pred CCcCCc-hHHHHHHHHHHhhCC
Q 022451 223 GIFSHT-EVFSCIYNTLRQVFK 243 (297)
Q Consensus 223 ~~~~~~-~~~~~i~~~l~~~F~ 243 (297)
+..... .....+.+.+-+.+.
T Consensus 398 g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 398 GSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp HHHHCCGGGHHHHHHHHHHTTC
T ss_pred hhhhcCcchHHHHHHHHHhCCc
Confidence 111122 345677777766654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-08 Score=89.95 Aligned_cols=161 Identities=13% Similarity=-0.002 Sum_probs=101.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc--chHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~--Da~~~l~~~~~~yD~ 178 (297)
.+..+|||||||.|++++.+++..+..+|+++|+...+...+... .. .+.++..... |.. .....++|+
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-----~~-~g~~ii~~~~~~dv~---~l~~~~~Dv 159 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-----TT-LGWNLIRFKDKTDVF---NMEVIPGDT 159 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-----CB-TTGGGEEEECSCCGG---GSCCCCCSE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-----cc-CCCceEEeeCCcchh---hcCCCCcCE
Confidence 456689999999999999999766778899999976532111110 00 1123332232 322 224578999
Q ss_pred EEEcCCCCCCCCC-ccCcccHHHHHHHHcccCCCC--cEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecC-c
Q 022451 179 IIGDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-S 254 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~t~ef~~~~~~~~L~pg--Gvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp-~ 254 (297)
|++|.... ...+ ..+..+.+.++. +.+.|+|| |.|++..-.| -.+....++..|++.|..|..+. | |
T Consensus 160 VLSDmApn-sG~~~~D~~rs~~LL~~-A~~~Lk~g~~G~Fv~KvF~p----yg~~~~~l~~~lk~~F~~V~~~K---PaS 230 (282)
T 3gcz_A 160 LLCDIGES-SPSIAVEEQRTLRVLNC-AKQWLQEGNYTEFCIKVLCP----YTPLIMEELSRLQLKHGGGLVRV---PLS 230 (282)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEEESCC----CSHHHHHHHHHHHHHHCCEEECC---TTS
T ss_pred EEecCccC-CCChHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEecC----CCccHHHHHHHHHHhcCCEEEEc---CCC
Confidence 99998643 2211 012222234555 67899999 9999985221 15667889999999999987554 4 2
Q ss_pred cC-CceeEEEEecCCCCCCccccccc
Q 022451 255 FA-DTWGWIMVSIYNPHSHSILSLSY 279 (297)
Q Consensus 255 ~~-~~~~~~~as~~~~~~~~i~~~~~ 279 (297)
.. ..-.|++|..+.+..+.++.+++
T Consensus 231 R~~S~E~Y~V~~~r~n~~~~v~~~s~ 256 (282)
T 3gcz_A 231 RNSTHEMYWVSGTRTDVVGTVSNVSR 256 (282)
T ss_dssp CTTCCCEEEETTCCCCSHHHHHHHHH
T ss_pred cccCcceeEEEecCCCccchHHHHHH
Confidence 22 22367777777666665555544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=82.52 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-----CCcEEEEEECCHH--------------------------HHHHHHhhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEE--------------------------VVEFCKSYLVV 148 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~--------------------------vi~~a~~~f~~ 148 (297)
...|++||++|+..|..+..++... +..+|+++|..+. .++.++++|..
T Consensus 104 ~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~ 183 (282)
T 2wk1_A 104 NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN 183 (282)
T ss_dssp TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence 3568999999999999887765421 3678999996421 46678888864
Q ss_pred ccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 149 NKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 149 ~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+ +..++++++.+|+.+.|... .++||+|++|... .-.+..+|+. +..+|+|||++++--
T Consensus 184 ~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--------y~~~~~~Le~-~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 184 YD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--------YESTWDTLTN-LYPKVSVGGYVIVDD 244 (282)
T ss_dssp TT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--------HHHHHHHHHH-HGGGEEEEEEEEESS
T ss_pred cC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--------cccHHHHHHH-HHhhcCCCEEEEEcC
Confidence 42 22479999999999988764 4689999999621 1124688898 799999999998753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-07 Score=90.10 Aligned_cols=138 Identities=8% Similarity=-0.021 Sum_probs=88.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC---C---------------CcEEEEEECCHHHHHHHHhhhhhccCCCCC---CCeE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK---T---------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSD---PRLE 159 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~---~---------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~---~rv~ 159 (297)
....+|||.+||+|+++..+.++. . ..+++++|+|+.++++|+.++...+. .. .+.+
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi--~~~~~~~~~ 245 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI--EGNLDHGGA 245 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC--CCBGGGTBS
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC--CccccccCC
Confidence 345799999999999987776531 0 23799999999999999998765431 11 1378
Q ss_pred EEEcchHHHHhccCCCceEEEEcCCCCCCCCC--------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHH
Q 022451 160 LVINDARAELESRKESYDVIIGDLADPIEGGP--------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF 231 (297)
Q Consensus 160 ~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p--------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~ 231 (297)
++++|..........+||+|+.++|-...... ...-....|++. +.+.|+|||.+++-+. .+........
T Consensus 246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~gGr~a~V~p-~~~L~~~~~~ 323 (541)
T 2ar0_A 246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVVP-DNVLFEGGKG 323 (541)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEE-HHHHHCCTHH
T ss_pred eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH-HHHHhCCCCEEEEEec-CcceecCcHH
Confidence 99999865433334689999999873211000 001112368888 7899999998876641 1111122234
Q ss_pred HHHHHHHHhhC
Q 022451 232 SCIYNTLRQVF 242 (297)
Q Consensus 232 ~~i~~~l~~~F 242 (297)
..+.+.|.+.+
T Consensus 324 ~~iR~~L~~~~ 334 (541)
T 2ar0_A 324 TDIRRDLMDKC 334 (541)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHhhcC
Confidence 55666665544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=78.62 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
..++.+||+||||. + .+|+++.|++.|++.+. .+++++.+|+.+.-.. .+++||
T Consensus 10 ~~~g~~vL~~~~g~---------------v-~vD~s~~ml~~a~~~~~--------~~~~~~~~d~~~~~~~~~~~~~fD 65 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------S-PVEALKGLVDKLQALTG--------NEGRVSVENIKQLLQSAHKESSFD 65 (176)
T ss_dssp CCTTSEEEEEECTT---------------S-CHHHHHHHHHHHHHHTT--------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred CCCCCEEEEecCCc---------------e-eeeCCHHHHHHHHHhcc--------cCcEEEEechhcCccccCCCCCEe
Confidence 35678999999985 1 39999999999998752 2489999998765321 457899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCC---cCCchHHHHHHHHHHhh-C
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQV-F 242 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~---~~~~~~~~~i~~~l~~~-F 242 (297)
+|++...-++. .+ . ...+++. +++.|+|||.+++....... .........+.+.+++. |
T Consensus 66 ~V~~~~~l~~~-~~--~--~~~~l~~-~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 66 IILSGLVPGST-TL--H--SAEILAE-IARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EEEECCSTTCC-CC--C--CHHHHHH-HHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred EEEECChhhhc-cc--C--HHHHHHH-HHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 99986543321 01 1 2578999 89999999999985310000 00111245666777765 6
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.7e-07 Score=91.10 Aligned_cols=140 Identities=11% Similarity=0.044 Sum_probs=88.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCC---CcEEEEEECCHHHHHHH--HhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFC--KSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a--~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+.+|||.|||+|+++..+++..+ ..+++++|+|+.++++| +.++..+......+...+..+|....-.....+|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999887643 35799999999999999 5443321111112234666677654211234689
Q ss_pred eEEEEcCCCCC-CCCCcc-----------------C-----cccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHH
Q 022451 177 DVIIGDLADPI-EGGPCY-----------------K-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVF 231 (297)
Q Consensus 177 D~Ii~D~~~~~-~~~p~~-----------------~-----L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~ 231 (297)
|+|+.++|-.. ...+.. . -....|++. +.+.|+|||.+++-+. ..+. .....
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~-Al~lLKpGGrLAfIlP--~s~Lf~sg~~~ 477 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLEL-VTELVQDGTVISAIMP--KQYLTAQGNES 477 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHH-HHHHSCTTCEEEEEEE--THHHHCCSHHH
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHH-HHHhcCCCcEEEEEEC--hHHhccCChHH
Confidence 99999997311 100000 0 013357888 7899999999987652 1122 22345
Q ss_pred HHHHHHHHhhCCc
Q 022451 232 SCIYNTLRQVFKY 244 (297)
Q Consensus 232 ~~i~~~l~~~F~~ 244 (297)
+.+++.+.+.+.-
T Consensus 478 kkLRk~LLe~~~I 490 (878)
T 3s1s_A 478 KAFREFLVGNFGL 490 (878)
T ss_dssp HHHHHHHTTTTCE
T ss_pred HHHHHHHHhCCCe
Confidence 6667776666553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-07 Score=80.92 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=58.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhccCC--
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKE-- 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~~~-- 174 (297)
..++.+|||||||+|.++..+++.... .+|++||+|+.+++.+++.+ . ++++++.+|+.++ +.....
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~------~~v~~i~~D~~~~~~~~~~~~~ 111 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G------ELLELHAGDALTFDFGSIARPG 111 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G------GGEEEEESCGGGCCGGGGSCSS
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C------CCcEEEECChhcCChhHhcccc
Confidence 356789999999999999999986321 34999999999999999873 2 5799999999775 222111
Q ss_pred --CceEEEEcCC
Q 022451 175 --SYDVIIGDLA 184 (297)
Q Consensus 175 --~yD~Ii~D~~ 184 (297)
..+.|+.+++
T Consensus 112 ~~~~~~vv~NlP 123 (279)
T 3uzu_A 112 DEPSLRIIGNLP 123 (279)
T ss_dssp SSCCEEEEEECC
T ss_pred cCCceEEEEccC
Confidence 2356777764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-07 Score=83.02 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=100.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~~~~~yD~ 178 (297)
..+.++||||||+.|+++..+++..+...|+++|+....... +.....+..+-+.+..+ |.+ .....++|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~-----P~~~~~~~~~iv~~~~~~di~---~l~~~~~Dl 150 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEK-----PIHMQTLGWNIVKFKDKSNVF---TMPTEPSDT 150 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCC-----CCCCCBTTGGGEEEECSCCTT---TSCCCCCSE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccc-----cccccccCCceEEeecCceee---ecCCCCcCE
Confidence 357889999999999999999986667789999996532100 00000000111223222 322 223578999
Q ss_pred EEEcCCCCCCCCC-ccCcccHHHHHHHHcccCCCC-cEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecC-cc
Q 022451 179 IIGDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP-SF 255 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp-~~ 255 (297)
|++|.... ...+ ..+.-+...++. +.+.|+|| |.|++..-.| -.+....++..|++.|..|..+. | |.
T Consensus 151 VlsD~APn-sG~~~~D~~rs~~LL~~-A~~~LkpG~G~FV~KvF~~----yG~~~~~ll~~lk~~F~~V~~~K---PaSR 221 (300)
T 3eld_A 151 LLCDIGES-SSNPLVERDRTMKVLEN-FERWKHVNTENFCVKVLAP----YHPDVIEKLERLQLRFGGGIVRV---PFSR 221 (300)
T ss_dssp EEECCCCC-CSSHHHHHHHHHHHHHH-HHHHCCTTCCEEEEEESST----TSHHHHHHHHHHHHHHCCEEECC---TTSC
T ss_pred EeecCcCC-CCCHHHHHHHHHHHHHH-HHHHhcCCCCcEEEEeccc----cCccHHHHHHHHHHhCCcEEEEe---CCCC
Confidence 99998633 2111 012222334665 67899999 9999985221 15667889999999999987553 4 22
Q ss_pred C-CceeEEEEecCCCCCCccccccc
Q 022451 256 A-DTWGWIMVSIYNPHSHSILSLSY 279 (297)
Q Consensus 256 ~-~~~~~~~as~~~~~~~~i~~~~~ 279 (297)
. ..-.|++|..+....+.++..++
T Consensus 222 ~~S~E~Y~V~~~r~n~~~~v~~~~~ 246 (300)
T 3eld_A 222 NSTHEMYYISGARNNITHMVNTTSR 246 (300)
T ss_dssp TTCCCEEEESSCCCCHHHHHHHHHH
T ss_pred CCChHHeeeccCCCCcchhHHHHHH
Confidence 2 23467778777666555554443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-07 Score=80.42 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hhcc---CCCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESR---KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~~~---~~~y 176 (297)
....+||+||||+|.++. +.+ .+..+|++||+|+.+++.+++.+.. .++++++.+|+.++ +... ....
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~------~~~v~~i~~D~~~~~~~~~~~~~~~~ 91 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMGQP 91 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc------CCceEEEECchhhCCHHHhhcccCCc
Confidence 456789999999999999 654 3222399999999999999987643 25899999998764 2211 1245
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.+++
T Consensus 92 ~~vvsNlP 99 (252)
T 1qyr_A 92 LRVFGNLP 99 (252)
T ss_dssp EEEEEECC
T ss_pred eEEEECCC
Confidence 78888875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=86.18 Aligned_cols=105 Identities=22% Similarity=0.365 Sum_probs=73.1
Q ss_pred CCeEEEEccchhHHHHHHHhc----C---------CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 103 PKTIFIMGGGEGSTAREILRH----K---------TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~----~---------~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
.+.|||+|||+|.+...+++. . ...+|++||-||.++...+.... ++ + .++|+++.+|.+++-
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~-~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--W-KRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--T-TTCSEEEESCGGGHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--C-CCeEEEEeCchhhcc
Confidence 457999999999996433221 1 23499999999987766555433 22 2 368999999999873
Q ss_pred h----ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 170 E----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 170 ~----~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
. ...++.|+||+.+..-. +. ..| ..+.+.. +.+.|+|||+++
T Consensus 486 lp~~~~~~ekVDIIVSElmGsf--l~-nEL-~pe~Ld~-v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 486 GIAKDRGFEQPDIIVSELLGSF--GD-NEL-SPECLDG-VTGFLKPTTISI 531 (745)
T ss_dssp HHHHHTTCCCCSEEEECCCBTT--BG-GGS-HHHHHHT-TGGGSCTTCEEE
T ss_pred cccccCCCCcccEEEEeccccc--cc-hhc-cHHHHHH-HHHhCCCCcEEE
Confidence 2 12578999999986322 11 122 3577777 689999999886
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-07 Score=89.80 Aligned_cols=113 Identities=8% Similarity=-0.024 Sum_probs=75.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC------------------------------------------CCcEEEEEECCHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK------------------------------------------TVEKVVMCDIDEEV 138 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~------------------------------------------~~~~v~~VEid~~v 138 (297)
.....+||.+||+|+++.+++... +..+|+++|+|+.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 456789999999999988877531 12479999999999
Q ss_pred HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc---ccCCCCcE
Q 022451 139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK---PRLNPEGI 214 (297)
Q Consensus 139 i~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~---~~L~pgGv 214 (297)
++.|+++....+ -+.++++..+|+.++.... .++||+|++++|-...-+.... -.++|+. +. +.+.|||.
T Consensus 269 v~~A~~N~~~ag---v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~--l~~ly~~-l~~~lk~~~~g~~ 342 (703)
T 3v97_A 269 IQRARTNARLAG---IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPA--LIALHSL-LGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHTT---CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHH--HHHHHHH-HHHHHHHHCTTCE
T ss_pred HHHHHHHHHHcC---CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhH--HHHHHHH-HHHHHHhhCCCCe
Confidence 999999976543 1346999999988753221 2279999999874321111011 1234444 33 44557887
Q ss_pred EEEec
Q 022451 215 FVTQA 219 (297)
Q Consensus 215 l~~~~ 219 (297)
+.+-+
T Consensus 343 ~~ilt 347 (703)
T 3v97_A 343 LSLFS 347 (703)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.7e-07 Score=88.13 Aligned_cols=103 Identities=15% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCeEEEEccchhHHHHHHH---hcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 103 PKTIFIMGGGEGSTAREIL---RHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~---~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.|||+|||+|.+...++ +.. ...+|.+||-+|. ...|++....++ + +++|+++.+|.+++ ..+++.|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~--~-~dkVtVI~gd~eev--~LPEKVDI 431 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEE--W-GSQVTVVSSDMREW--VAPEKADI 431 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHT--T-GGGEEEEESCTTTC--CCSSCEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhcc--C-CCeEEEEeCcceec--cCCcccCE
Confidence 3569999999999844433 322 1227899999985 556676655443 2 47899999999886 34589999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
||+....-. .. ..+. .+.+.. ..+.|||||+++
T Consensus 432 IVSEwMG~f--Ll-~E~m-levL~A-rdr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELLGSF--AD-NELS-PECLDG-AQHFLKDDGVSI 464 (637)
T ss_dssp EECCCCBTT--BG-GGCH-HHHHHH-HGGGEEEEEEEE
T ss_pred EEEEcCccc--cc-ccCC-HHHHHH-HHHhcCCCcEEc
Confidence 999887432 11 1221 245555 589999999886
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-08 Score=85.14 Aligned_cols=75 Identities=19% Similarity=0.411 Sum_probs=59.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||||+|.++..+++.. .+|++||+|+.+++.|++++.. .++++++.+|+.++-....++| .|+
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~------~~~v~~~~~D~~~~~~~~~~~f-~vv 98 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQFQFPNKQRY-KIV 98 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTTTCCCSSEE-EEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc------CCceEEEECChhhcCcccCCCc-EEE
Confidence 456789999999999999999863 7899999999999999887641 3689999999876521112578 777
Q ss_pred EcCC
Q 022451 181 GDLA 184 (297)
Q Consensus 181 ~D~~ 184 (297)
++++
T Consensus 99 ~n~P 102 (245)
T 1yub_A 99 GNIP 102 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8765
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=70.87 Aligned_cols=136 Identities=17% Similarity=0.258 Sum_probs=82.2
Q ss_pred CCCCCeEEEEcc------chhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc
Q 022451 100 HPNPKTIFIMGG------GEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~------G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
.|...+||++|+ ..|+.. +.+..+. ..|+.+||.|-.. ++. .++.+|..+.. .
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~s---------------da~-~~IqGD~~~~~--~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFVS---------------DAD-STLIGDCATVH--T 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCBC---------------SSS-EEEESCGGGEE--E
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCccccc---------------CCC-eEEEccccccc--c
Confidence 477899999996 566632 2223343 5999999976441 233 44999976532 3
Q ss_pred CCCceEEEEcCCCCCCCC---Cc--cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGG---PC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~---p~--~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
..+||+|++|........ +. ..-+.+..+.- +++.|+|||.|++.. +.... ...+..+++.|..|+.
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdf-A~~~LkpGGsFvVKV-----FQGsg--~~~L~~lrk~F~~VK~ 238 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGF-IKQKLALGGSIAVKI-----TEHSW--NADLYKLMGHFSWWTA 238 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHH-HHHHEEEEEEEEEEE-----CSSSC--CHHHHHHHTTEEEEEE
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHH-HHHhCcCCCEEEEEE-----ecCCC--HHHHHHHHhhCCeEEE
Confidence 578999999987432211 10 01122334444 688999999999985 22221 2335556679999888
Q ss_pred EEEecCccC-CceeEEEEe
Q 022451 248 YSAHIPSFA-DTWGWIMVS 265 (297)
Q Consensus 248 ~~~~vp~~~-~~~~~~~as 265 (297)
+.. .+.. ..-.|++|.
T Consensus 239 fK~--ASRa~SsEvYLVG~ 255 (344)
T 3r24_A 239 FVT--NVNASSSEAFLIGA 255 (344)
T ss_dssp EEE--GGGTTSSCEEEEEE
T ss_pred ECC--CCCCCCeeEEEEee
Confidence 741 1222 223566665
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=71.14 Aligned_cols=74 Identities=30% Similarity=0.258 Sum_probs=62.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhccC-CCc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK-ESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~~-~~y 176 (297)
.++..++|++||.|+.+..+++. ..+|+++|.||.+++.|++ +. ++|++++++|..++ +.... .++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~-------~~rv~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH-------LPGLTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC-------CTTEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc-------cCCEEEEECCcchHHHHHHHcCCCCc
Confidence 45678999999999999999997 5799999999999999998 53 16899999998765 44322 579
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|.|+.|+.
T Consensus 91 DgIL~DLG 98 (285)
T 1wg8_A 91 DGILADLG 98 (285)
T ss_dssp EEEEEECS
T ss_pred CEEEeCCc
Confidence 99999985
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.8e-05 Score=76.26 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=82.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcC------------CCcEEEEEEC---CHHHHHHHHhhhhh------------cc----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDI---DEEVVEFCKSYLVV------------NK---- 150 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~------------~~~~v~~VEi---d~~vi~~a~~~f~~------------~~---- 150 (297)
+.-+||++|.|+|......++.. ..-+++.+|. +++.+..+-++++. +.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999998765554321 1246889999 88877754443221 00
Q ss_pred ---CCCCC--CCeEEEEcchHHHHhcc----CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 151 ---EAFSD--PRLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 151 ---~~~~~--~rv~~~~~Da~~~l~~~----~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++ -+++++.+|+++.|.+. ..+||+|++|.|.|.. . ..|++.++|+. +.++++|||.++..+
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-n--p~~w~~~~~~~-l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-N--PDMWTQNLFNA-MARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-C--GGGSCHHHHHH-HHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-C--hhhhhHHHHHH-HHHHhCCCCEEEecc
Confidence 01122 34678999999999764 4679999999998752 2 47999999999 899999999998764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=81.44 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCeEEEEccchhHHHHHHHhcC----------C--CcEEEEEECCH---HHHHHHHhhhhh------------c-----
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK----------T--VEKVVMCDIDE---EVVEFCKSYLVV------------N----- 149 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~----------~--~~~v~~VEid~---~vi~~a~~~f~~------------~----- 149 (297)
++.+||++|.|+|.....+.+.. + ..+++.+|..| +.+..|-+.++. +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45789999999999765554421 1 15789999954 444433222210 0
Q ss_pred --cCCCCCC--CeEEEEcchHHHHhcc----CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 150 --KEAFSDP--RLELVINDARAELESR----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 150 --~~~~~~~--rv~~~~~Da~~~l~~~----~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+.+. +++++.+|+++.|+.. ..++|+|++|.|.|.. . ..+++.+||+. +.++++|||.++..+
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~-n--p~~w~~~~~~~-l~~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAK-N--PDMWNEQLFNA-MARMTRPGGTFSTFT 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---C--CTTCSHHHHHH-HHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCC-C--hhhhhHHHHHH-HHHHhCCCCEEEecc
Confidence 0012233 5678999999999764 4689999999998752 2 47999999999 899999999998764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-05 Score=68.31 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=91.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe---EEEEc-chHHHHhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL---ELVIN-DARAELESRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv---~~~~~-Da~~~l~~~~~~ 175 (297)
..+..+|+||||+.|++++.+++..+...|.+..+-.+. . -.+... ..+.+ ++..+ |.++ ....+
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~---~~~Gv~~i~~~~G~Df~~---~~~~~ 139 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLM---QSYGWNIVTMKSGVDVFY---KPSEI 139 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCC---CSTTGGGEEEECSCCGGG---SCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcc---cCCCceEEEeeccCCccC---CCCCC
Confidence 456889999999999999999986444455555543331 0 001110 01344 44447 8765 23468
Q ss_pred ceEEEEcCCCCCCCCCc-cCcccHHHHHHHHcccCCCCc-EEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecC
Q 022451 176 YDVIIGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP 253 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgG-vl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp 253 (297)
+|+|++|... ....+. .+.-+...+.. +.+.|+||| .|++..-.+ ..+.+.++++.+++.|..+.. .-|
T Consensus 140 ~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~-A~~~Lk~gG~~FvvKVFqg----~~~~~~~~l~~lk~~F~~vkv---k~p 210 (269)
T 2px2_A 140 SDTLLCDIGE-SSPSAEIEEQRTLRILEM-VSDWLSRGPKEFCIKILCP----YMPKVIEKLESLQRRFGGGLV---RVP 210 (269)
T ss_dssp CSEEEECCCC-CCSCHHHHHHHHHHHHHH-HHHHHTTCCSEEEEEESCT----TSHHHHHHHHHHHHHHCCEEE---CCT
T ss_pred CCEEEeCCCC-CCCccHHHHHHHHHHHHH-HHHHhhcCCcEEEEEECCC----CchHHHHHHHHHHHHcCCEEE---ECC
Confidence 9999999874 221110 11112224554 568999999 898875211 225677888899999999863 234
Q ss_pred cc-CC-ceeEEEEecCCCCCCcc
Q 022451 254 SF-AD-TWGWIMVSIYNPHSHSI 274 (297)
Q Consensus 254 ~~-~~-~~~~~~as~~~~~~~~i 274 (297)
.. .. .-.|++|..+....+.+
T Consensus 211 aSR~~S~E~YlVa~~~~n~~~~v 233 (269)
T 2px2_A 211 LSRNSNHEMYWVSGASGNIVHAV 233 (269)
T ss_dssp TSCTTCCCEEEETTCCSCHHHHH
T ss_pred CCCCCCccEEEEecccCcHHHHH
Confidence 32 22 23455555554444444
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.4e-05 Score=64.83 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=89.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~~~~~yD~I 179 (297)
.....||||||+.|+.+..++...+..+|.++|+-+.-.+ .+..-..+.-+-++++.+ |.+ ++ ...++|.|
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-----~P~~~~s~gwn~v~fk~gvDv~-~~--~~~~~Dtl 148 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-----EPVPMSTYGWNIVKLMSGKDVF-YL--PPEKCDTL 148 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCCCCTTTTSEEEECSCCGG-GC--CCCCCSEE
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-----CcchhhhcCcCceEEEecccee-ec--CCccccEE
Confidence 4566999999999999999998878889999999654221 111111233367899999 863 23 34779999
Q ss_pred EEcCCCCCCCCCc-cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|... ....|. +.--+...++. +.+.|++ |-+++..-.|. ...+.+.++.|+..|..+.+.
T Consensus 149 lcDIge-Ss~~~~vE~~RtlrvLel-a~~wL~~-~~fc~KVl~py----~p~v~e~l~~lq~~fgg~lVR 211 (267)
T 3p8z_A 149 LCDIGE-SSPSPTVEESRTIRVLKM-VEPWLKN-NQFCIKVLNPY----MPTVIEHLERLQRKHGGMLVR 211 (267)
T ss_dssp EECCCC-CCSCHHHHHHHHHHHHHH-HGGGCSS-CEEEEEESCCC----SHHHHHHHHHHHHHHCCEEEC
T ss_pred EEecCC-CCCChhhhhhHHHHHHHH-HHHhccc-CCEEEEEccCC----ChhHHHHHHHHHHHhCCEeEe
Confidence 999874 211221 11123346666 6789998 88888875552 233457778889999987644
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.6e-05 Score=66.74 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=87.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da~~~l~~~~~~yD~I 179 (297)
.....||||||+.|+++..++...++.+|.++|+-..-.+ .+..-..+.-+-|.++.+ |.+ ++. ..++|+|
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-----~P~~~~ql~w~lV~~~~~~Dv~-~l~--~~~~D~i 164 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-----EPQLVQSYGWNIVTMKSGVDVF-YRP--SECCDTL 164 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-----CCCCCCBTTGGGEEEECSCCTT-SSC--CCCCSEE
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-----CcchhhhcCCcceEEEeccCHh-hCC--CCCCCEE
Confidence 4566999999999999999888878889999999644110 010000111133777777 753 333 3679999
Q ss_pred EEcCCCCCCCCCc-cCcccHHHHHHHHcccCCCC-cEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLADPIEGGPC-YKLYTKSFYEFVVKPRLNPE-GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pg-Gvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
++|..... ..|. +.--+...++. +.+.|+++ |-+++..-.|+ .+.+.+.+..|+..|..+.+.
T Consensus 165 vcDigeSs-~~~~ve~~Rtl~vLel-~~~wL~~~~~~f~~KVl~pY----~~~v~e~l~~lq~~fgg~lvr 229 (321)
T 3lkz_A 165 LCDIGESS-SSAEVEEHRTIRVLEM-VEDWLHRGPREFCVKVLCPY----MPKVIEKMELLQRRYGGGLVR 229 (321)
T ss_dssp EECCCCCC-SCHHHHHHHHHHHHHH-HHHHHTTCCCEEEEEESCTT----SHHHHHHHHHHHHHHCCEEEC
T ss_pred EEECccCC-CChhhhhhHHHHHHHH-HHHHhccCCCcEEEEEcCCC----ChHHHHHHHHHHHHhCCEeEe
Confidence 99997321 1111 11122335565 57889988 89998875552 244557788899999987644
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00057 Score=64.02 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=70.4
Q ss_pred CCeEEEEccchhHHHHHHHhc-----------------CCCcEEEEEECC-----------HHHHHHHHhhhhhccCCCC
Q 022451 103 PKTIFIMGGGEGSTAREILRH-----------------KTVEKVVMCDID-----------EEVVEFCKSYLVVNKEAFS 154 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~-----------------~~~~~v~~VEid-----------~~vi~~a~~~f~~~~~~~~ 154 (297)
+-+|+|+||++|..+..+... .|.-+|...|+- |...+.+++..+ .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g------~ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG------R 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC------C
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc------C
Confidence 678999999999887655432 244567777776 444443332211 1
Q ss_pred CCCeEEEEcchHHHHhc--cCCCceEEEEcCCCCCCCCCccCccc---------------------------------HH
Q 022451 155 DPRLELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT---------------------------------KS 199 (297)
Q Consensus 155 ~~rv~~~~~Da~~~l~~--~~~~yD~Ii~D~~~~~~~~p~~~L~t---------------------------------~e 199 (297)
..+-.++.+.+..|-.. ..+.+|+|++...-+|-...+..+.+ ..
T Consensus 127 ~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~ 206 (384)
T 2efj_A 127 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT 206 (384)
T ss_dssp CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence 12346777777776543 46789999999987774333222221 12
Q ss_pred HHHHHHcccCCCCcEEEEecC
Q 022451 200 FYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 200 f~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++. ..+.|+|||.+++...
T Consensus 207 FL~~-Ra~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 207 FLRI-HSEELISRGRMLLTFI 226 (384)
T ss_dssp HHHH-HHHHEEEEEEEEEEEE
T ss_pred HHHH-HHHHhccCCeEEEEEe
Confidence 3565 5799999999998874
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=68.13 Aligned_cols=59 Identities=8% Similarity=0.112 Sum_probs=50.0
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
...||+||.|.|.+++.|++.....+|++||+|++.+...++.+ . .++++++.+|+..+
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~--~-----~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF--E-----GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT--T-----TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc--c-----CCCEEEEECCccch
Confidence 47899999999999999998533468999999999999888765 1 36899999999655
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0002 Score=69.94 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=83.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc----CC---------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH----KT---------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR 166 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~----~~---------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~ 166 (297)
.....+|+|-.||+|++...+.++ .. ...+.++|+|+.+..+|+-++-+.+ .+.-++..+|..
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg----~~~~~I~~~dtL 290 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG----LEYPRIDPENSL 290 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT----CSCCEEECSCTT
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC----Cccccccccccc
Confidence 344668999999999998766542 11 2469999999999999998876543 233467788865
Q ss_pred HHH-hc--cCCCceEEEEcCCCCCCCC----------CccCcccHHHHHHHHcccCC-------CCcEEEEecCCCCCcC
Q 022451 167 AEL-ES--RKESYDVIIGDLADPIEGG----------PCYKLYTKSFYEFVVKPRLN-------PEGIFVTQAGPAGIFS 226 (297)
Q Consensus 167 ~~l-~~--~~~~yD~Ii~D~~~~~~~~----------p~~~L~t~ef~~~~~~~~L~-------pgGvl~~~~~~p~~~~ 226 (297)
.+- .. ...+||+|+.++|-..... +...-...-|++. +.+.|+ |||.+++-.. .+...
T Consensus 291 ~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~-~l~~Lk~~~~~l~~gGr~avVlP-~g~Lf 368 (530)
T 3ufb_A 291 RFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQL-IMRKLKRPGHGSDNGGRAAVVVP-NGTLF 368 (530)
T ss_dssp CSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHH-HHHHBCCTTSSSSSCCEEEEEEE-HHHHH
T ss_pred cCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHH-HHHHhhhhhhccCCCceEEEEec-chhhh
Confidence 431 11 2357999999997321000 0001112346666 455554 7998876641 11112
Q ss_pred CchHHHHHHHHHHhhCC
Q 022451 227 HTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 227 ~~~~~~~i~~~l~~~F~ 243 (297)
.......+++.|-+.+.
T Consensus 369 ~~~~~~~iRk~Lle~~~ 385 (530)
T 3ufb_A 369 SDGISARIKEELLKNFN 385 (530)
T ss_dssp CCTHHHHHHHHHHHHSE
T ss_pred ccchHHHHHHHHhhcCE
Confidence 23334556666666554
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0005 Score=63.13 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=60.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhccC--C
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRK--E 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~~~--~ 174 (297)
.++..++|..+|.|+.+..+++. .+..+|+++|.||.+++.|+ .+ .++|++++.++..++ +.... +
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-------~~~Rv~lv~~nF~~l~~~L~~~g~~~ 127 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-------DDPRFSIIHGPFSALGEYVAERDLIG 127 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-------CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-------cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence 45678999999999999999986 46789999999999999995 33 247999999987665 33321 3
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
++|.|+.|+-
T Consensus 128 ~vDgILfDLG 137 (347)
T 3tka_A 128 KIDGILLDLG 137 (347)
T ss_dssp CEEEEEEECS
T ss_pred cccEEEECCc
Confidence 6999999984
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00019 Score=66.85 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=55.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||||++.|+.+..+++. ..+|++||+.|.--. .. .+++|+++.+|++.+... ..++|+|+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~-l~----------~~~~V~~~~~d~~~~~~~-~~~~D~vv 275 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQS-LM----------DTGQVTWLREDGFKFRPT-RSNISWMV 275 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHH-HH----------TTTCEEEECSCTTTCCCC-SSCEEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChh-hc----------cCCCeEEEeCccccccCC-CCCcCEEE
Confidence 56789999999999999999986 468999997642211 11 358999999999886532 46799999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
+|...
T Consensus 276 sDm~~ 280 (375)
T 4auk_A 276 CDMVE 280 (375)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 99863
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0016 Score=59.92 Aligned_cols=151 Identities=15% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~I 179 (297)
+.+|+++.||.|++...+.+.. ....|.++|+|+..++..+.+++ ...++.+|..++.... ...+|+|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---------~~~~~~~Di~~~~~~~~~~~~~D~l 72 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---------ccccccCCHHHccHhHcCcCCcCEE
Confidence 4579999999999998888752 13579999999999999999864 2346778887653211 1269999
Q ss_pred EEcCC-CCCC-CC-------CccCcccHHHHHHHHcccCC--CCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLA-DPIE-GG-------PCYKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~-~~~~-~~-------p~~~L~t~ef~~~~~~~~L~--pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+.+++ .+.+ .+ +...| -.++++. + +.++ |.-+++=|+. + ......+..+.+.|.+.-=.+...
T Consensus 73 ~~gpPCq~fS~ag~~~g~~d~r~~l-~~~~~~~-i-~~~~~~P~~~~~ENV~--~-l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 73 LMSPPCQPFTRIGRQGDMTDSRTNS-FLHILDI-L-PRLQKLPKYILLENVK--G-FEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp EECCC------------------CH-HHHHHHH-G-GGCSSCCSEEEEEEET--T-GGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred EEcCCCcchhhcCCcCCccCccchH-HHHHHHH-H-HHhcCCCCEEEEeCCc--c-ccCHHHHHHHHHHHHHCCCeeEEE
Confidence 99987 2221 11 11122 2356664 3 5677 8877765542 2 223456677778776542122221
Q ss_pred EEecCccC----CceeEEEEecCC
Q 022451 249 SAHIPSFA----DTWGWIMVSIYN 268 (297)
Q Consensus 249 ~~~vp~~~----~~~~~~~as~~~ 268 (297)
......|+ ...-|+++.+.+
T Consensus 147 vl~a~~~GvPQ~R~R~~iv~~~~~ 170 (343)
T 1g55_A 147 LLSPTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp EECGGGGTCSCCCCEEEEEEEESS
T ss_pred EEEHHHCCCCCcccEEEEEEEeCC
Confidence 11112232 124567777654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00056 Score=63.88 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=72.4
Q ss_pred CCCCeEEEEccchhHHHHHHH--------hc-------CCCcEEEEEECCHHHHHHHHhhhhhccCCC--------CCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREIL--------RH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--------SDPR 157 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~--------~~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~--------~~~r 157 (297)
+.+-+|+|+|||+|..+..+. +. .|.-+|..-|+-..-....-+.++.....+ ...+
T Consensus 51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC
Confidence 346789999999998876552 11 245677788876655544433333211000 0112
Q ss_pred eEEEEcchHHHHhc--cCCCceEEEEcCCCCCCCCCccCccc--------------------------------HHHHHH
Q 022451 158 LELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYT--------------------------------KSFYEF 203 (297)
Q Consensus 158 v~~~~~Da~~~l~~--~~~~yD~Ii~D~~~~~~~~p~~~L~t--------------------------------~ef~~~ 203 (297)
-.++.+.+..|-.. +++.+|+|++...-+|-...+..+.+ ..|++.
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24566666655432 46789999999987774332222211 125666
Q ss_pred HHcccCCCCcEEEEecC
Q 022451 204 VVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~~ 220 (297)
..+.|+|||.+++...
T Consensus 211 -ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 211 -RAAEVKRGGAMFLVCL 226 (374)
T ss_dssp -HHHHEEEEEEEEEEEE
T ss_pred -HHHHhCCCCEEEEEEe
Confidence 6899999999998863
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=57.25 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+.+||+||||.| ..+..|.++. ...|+++|++|..++ ++.+|.++-....-+.||+|
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~-------------------~v~dDiF~P~~~~Y~~~DLI 93 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG-------------------IVRDDITSPRMEIYRGAALI 93 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT-------------------EECCCSSSCCHHHHTTEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc-------------------eEEccCCCCcccccCCcCEE
Confidence 45689999999999 5899888743 468999999987765 45556543221111479999
Q ss_pred -EEcCC
Q 022451 180 -IGDLA 184 (297)
Q Consensus 180 -i~D~~ 184 (297)
-+.++
T Consensus 94 YsirPP 99 (153)
T 2k4m_A 94 YSIRPP 99 (153)
T ss_dssp EEESCC
T ss_pred EEcCCC
Confidence 55543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0099 Score=54.34 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=93.5
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
..++++|.||.|++...+.+. +...+.++|+|+..++..+.+++.. . .+|..++....-..+|+|+.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~------~-----~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------P-----EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------C-----BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC------C-----cCCHHHcCHhhCCCCCEEEEC
Confidence 468999999999999988875 4678899999999999999987521 1 588877654433569999999
Q ss_pred CC-CCCC-CC-------CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhhCCceeEEEEe
Q 022451 183 LA-DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAH 251 (297)
Q Consensus 183 ~~-~~~~-~~-------p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~ 251 (297)
++ .+.+ ++ +...| -.++++. + +.++|.-+++=|+ ++... ....+..+.+.|.+.-=.+......
T Consensus 79 pPCQ~fS~ag~~~g~~d~r~~L-~~~~~r~-i-~~~~P~~~~~ENV--~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~ 153 (327)
T 2c7p_A 79 FPCQAFSISGKQKGFEDSRGTL-FFDIARI-V-REKKPKVVFMENV--KNFASHDNGNTLEVVKNTMNELDYSFHAKVLN 153 (327)
T ss_dssp CCCTTTCTTSCCCGGGSTTSCH-HHHHHHH-H-HHHCCSEEEEEEE--GGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEE
T ss_pred CCCCCcchhcccCCCcchhhHH-HHHHHHH-H-HhccCcEEEEeCc--HHHHhccccHHHHHHHHHHHhCCCEEEEEEEE
Confidence 87 2221 11 11123 2466665 4 5679987776664 22121 2346777888887652223322222
Q ss_pred cCccC---C-ceeEEEEecC
Q 022451 252 IPSFA---D-TWGWIMVSIY 267 (297)
Q Consensus 252 vp~~~---~-~~~~~~as~~ 267 (297)
...|+ . ..-|+++.+.
T Consensus 154 a~~~GvPQ~R~R~~iv~~~~ 173 (327)
T 2c7p_A 154 ALDYGIPQKRERIYMICFRN 173 (327)
T ss_dssp GGGGTCSBCCEEEEEEEEBG
T ss_pred HHHcCCCccceEEEEEEEeC
Confidence 23343 1 2456777654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00066 Score=63.03 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred CCCCeEEEEccchhHHHHHHHh----------------cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 022451 101 PNPKTIFIMGGGEGSTAREILR----------------HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~----------------~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D 164 (297)
+.+-+|+|+||++|..+..+.. ..|.-+|...|+-..-...+-+.++... ...+-.++.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~---~~~~~~f~~gv 126 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGV 126 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEE
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc---ccCCCEEEEec
Confidence 4567899999999975432221 1456788999998888888877765321 11145778888
Q ss_pred hHHHHhc--cCCCceEEEEcCCCCCCCCCccC--------------------cccH-------HHHHHHHcccCCCCcEE
Q 022451 165 ARAELES--RKESYDVIIGDLADPIEGGPCYK--------------------LYTK-------SFYEFVVKPRLNPEGIF 215 (297)
Q Consensus 165 a~~~l~~--~~~~yD~Ii~D~~~~~~~~p~~~--------------------L~t~-------ef~~~~~~~~L~pgGvl 215 (297)
+..|-.. ..+.+|+|++...-+|-...+.. .|.. .|++. ..+.|+|||.+
T Consensus 127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~-Ra~EL~pGG~m 205 (359)
T 1m6e_X 127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC-RAQEVVPGGRM 205 (359)
T ss_dssp ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH-HHHHBCTTCEE
T ss_pred chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCceE
Confidence 7776543 46789999999887764322111 2222 35666 68999999999
Q ss_pred EEec
Q 022451 216 VTQA 219 (297)
Q Consensus 216 ~~~~ 219 (297)
++..
T Consensus 206 vl~~ 209 (359)
T 1m6e_X 206 VLTI 209 (359)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=59.02 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=41.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
.+...|||++||+|+++.++.+. ..+++++|+++.+++.|++++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 56789999999999999999986 36899999999999999998753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.056 Score=49.43 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=91.1
Q ss_pred CeEEEEccchhHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEEE
Q 022451 104 KTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~Ii 180 (297)
-+++++.||.|++..-+.+.. +...|.++|+|+...+..+.+|+ ...++.+|..+.... ....+|+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---------~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---------ETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---------CCceeccccccCCHHHhccCCCCEEE
Confidence 479999999999988877642 12568899999999999998874 234567787654322 123699999
Q ss_pred EcCC-CCCC--------CCCccCcccHHHHHHHHcccCC-CCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEE
Q 022451 181 GDLA-DPIE--------GGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (297)
Q Consensus 181 ~D~~-~~~~--------~~p~~~L~t~ef~~~~~~~~L~-pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 250 (297)
..++ .+.+ ..+...|+ .++++. + +.++ |.-+++=|+ ++ ......+..+.+.|.+.-=.+.....
T Consensus 75 ggpPCQ~fS~ag~~~~~~d~r~~L~-~~~~r~-i-~~~~~P~~~vlENV--~g-l~~~~~~~~i~~~l~~~GY~v~~~vl 148 (333)
T 4h0n_A 75 MSPPCQPFTRNGKYLDDNDPRTNSF-LYLIGI-L-DQLDNVDYILMENV--KG-FENSTVRNLFIDKLKECNFIYQEFLL 148 (333)
T ss_dssp ECCCCCCSEETTEECCTTCTTSCCH-HHHHHH-G-GGCTTCCEEEEEEC--TT-GGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ecCCCcchhhhhhccCCcCcccccH-HHHHHH-H-HHhcCCCEEEEecc--hh-hhhhhHHHHHHHHHHhCCCeEEEEEe
Confidence 9887 2221 11212343 466665 4 5665 987776664 22 22344567777777764222222222
Q ss_pred ecCccC----CceeEEEEecCC
Q 022451 251 HIPSFA----DTWGWIMVSIYN 268 (297)
Q Consensus 251 ~vp~~~----~~~~~~~as~~~ 268 (297)
....|+ ...-|++|++.+
T Consensus 149 ~a~~~GvPQ~R~R~fiva~r~~ 170 (333)
T 4h0n_A 149 CPSTVGVPNSRLRYYCTARRNN 170 (333)
T ss_dssp CTTTTTCSCCCCEEEEEEEETT
T ss_pred cHHHcCCCccceEEEEEEEeCC
Confidence 222343 124577787765
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.047 Score=49.84 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=88.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcC-CCcEE-EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 102 NPKTIFIMGGGEGSTAREILRHK-TVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~-~~~~v-~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+-+++++.||.|++..-+.+.. +...+ .++|+|+...+..+.+|+.. ++.+|.++.... ....+|
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----------~~~~DI~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----------VQVKNLDSISIKQIESLNCN 78 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----------CBCCCTTTCCHHHHHHTCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----------cccCChhhcCHHHhccCCCC
Confidence 45689999999999988877642 23567 79999999999999987521 345565443211 113699
Q ss_pred EEEEcCC-CCC--C--------CCCccCcccHHHHH-HHHcccC--CCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 178 VIIGDLA-DPI--E--------GGPCYKLYTKSFYE-FVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 178 ~Ii~D~~-~~~--~--------~~p~~~L~t~ef~~-~~~~~~L--~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
+|+..++ .+. + ..+...| -.++++ . + +.+ +|.-+++=|+ ++ ......+..+.+.|.+..=
T Consensus 79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L-~~~~~r~~-i-~~~~~~P~~~~lENV--~g-l~~~~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 79 TWFMSPPCQPYNNSIMSKHKDINDPRAKS-VLHLYRDI-L-PYLINKPKHIFIENV--PL-FKESLVFKEIYNILIKNQY 152 (327)
T ss_dssp EEEECCCCTTCSHHHHTTTCTTTCGGGHH-HHHHHHTT-G-GGCSSCCSEEEEEEC--GG-GGGSHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCcccccCCCCCCCccccchh-HHHHHHHH-H-HHhccCCCEEEEEch--hh-hcChHHHHHHHHHHHhCCC
Confidence 9999887 233 1 0111112 124444 3 2 455 6877666554 22 2234567778888876532
Q ss_pred ceeEEEEecCccC----CceeEEEEecCC
Q 022451 244 YVVPYSAHIPSFA----DTWGWIMVSIYN 268 (297)
Q Consensus 244 ~v~~~~~~vp~~~----~~~~~~~as~~~ 268 (297)
.+.........|+ ...-|+++++.+
T Consensus 153 ~v~~~vl~a~~yGvPQ~R~R~fivg~r~~ 181 (327)
T 3qv2_A 153 YIKDIICSPIDIGIPNSRTRYYVMARLTP 181 (327)
T ss_dssp EEEEEEECGGGGTCSBCCCEEEEEEESSC
T ss_pred EEEEEEEeHHHcCCCccceEEEEEEEeCC
Confidence 2332222222342 124567777664
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0042 Score=57.95 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=80.2
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-------cCCCc
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-------RKESY 176 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-------~~~~y 176 (297)
-+|++|.||.|++...+.+. +...+.+||+|+..++..+.++ +...++.+|..+.... ....+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~---------~~~~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF---------PRSLHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC---------TTSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC---------CCCceEecChhhcCHHHHHhhcccCCCe
Confidence 47999999999999888775 4667889999999999998875 3456788887664221 23679
Q ss_pred eEEEEcCC-CCCC-CCC------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--CchHHHHHHHHHHhh
Q 022451 177 DVIIGDLA-DPIE-GGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV 241 (297)
Q Consensus 177 D~Ii~D~~-~~~~-~~p------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~--~~~~~~~i~~~l~~~ 241 (297)
|+|+.+++ .+.+ .+. ...| ..+|++. + +.++|.-+++=|+. +... ....+..+. .|.+.
T Consensus 73 D~i~ggpPCQ~fS~ag~~~~~d~r~~L-~~~~~~~-v-~~~~P~~~v~ENV~--gl~s~~~~~~~~~i~-~l~~~ 141 (376)
T 3g7u_A 73 DGIIGGPPCQGFSSIGKGNPDDSRNQL-YMHFYRL-V-SELQPLFFLAENVP--GIMQEKYSGIRNKAF-NLVSG 141 (376)
T ss_dssp CEEEECCCCCTTC-------CHHHHHH-HHHHHHH-H-HHHCCSEEEEEECT--TTTCGGGHHHHHHHH-HHHHT
T ss_pred eEEEecCCCCCcccccCCCCCCchHHH-HHHHHHH-H-HHhCCCEEEEecch--HhhccCcHHHHHHHH-HHHcC
Confidence 99999987 2221 111 0122 2356665 3 57899887776652 2121 233566666 66654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.032 Score=51.06 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-----cchHHHHhc--
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-- 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-----~Da~~~l~~-- 171 (297)
..++++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. .. .-+.... .|..+.+..
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-------~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-------EVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-------TCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-------hcccccccccchHHHHHHHHHHh
Confidence 45678999999865 66778888876665699999999999999986 21 1122221 233333433
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
....+|+|+-... . ...++. +.+.|+++|.++.-.
T Consensus 249 ~g~g~Dvvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 249 GGIEPAVALECTG-----V-------ESSIAA-AIWAVKFGGKVFVIG 283 (363)
T ss_dssp SSCCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECC
T ss_pred CCCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEc
Confidence 2457999985432 1 135666 678999999998654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.05 Score=48.01 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-------CCCcEEEEEE-----CCHH-----------------------HHHHH--H
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCD-----IDEE-----------------------VVEFC--K 143 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VE-----id~~-----------------------vi~~a--~ 143 (297)
.-|..|+++|+-.|..+..++.. .+..+|.+.| ..+. +-++. +
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 56899999999988877664431 2457899998 3210 11111 1
Q ss_pred hhhhhccCCCCCCCeEEEEcchHHHHhc-----cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 144 SYLVVNKEAFSDPRLELVINDARAELES-----RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 144 ~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+++... ...+++++++.|++.+.|.. ...++|+|.+|.-. .--+...|+. +..+|+|||++++-
T Consensus 148 ~~~~~~--g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--------Y~~t~~~le~-~~p~l~~GGvIv~D 216 (257)
T 3tos_A 148 ECSDFF--GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--------YEPTKAVLEA-IRPYLTKGSIVAFD 216 (257)
T ss_dssp HTTSTT--TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--------HHHHHHHHHH-HGGGEEEEEEEEES
T ss_pred hhhhhc--CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--------cchHHHHHHH-HHHHhCCCcEEEEc
Confidence 111111 11247899999999888754 23579999999721 1125578888 78999999999986
Q ss_pred c
Q 022451 219 A 219 (297)
Q Consensus 219 ~ 219 (297)
-
T Consensus 217 D 217 (257)
T 3tos_A 217 E 217 (257)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0085 Score=54.48 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.-. . .-+.....|..+.+......+|+|
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lGa-~------~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGA-E------VAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTC-S------EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHcCC-C------EEEeCCCcCHHHHHHHhCCCCCEE
Confidence 5678999999875 778888888765 499999999999999987421 1 001111134444454433479999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.... . .+.++. +.+.|+++|.++...
T Consensus 237 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 237 LVTAV-----S-------PKAFSQ-AIGMVRRGGTIALNG 263 (340)
T ss_dssp EESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred EEeCC-----C-------HHHHHH-HHHHhccCCEEEEeC
Confidence 86542 1 245666 678999999997653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.059 Score=49.25 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=64.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE------cchHHHHhc-
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES- 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~------~Da~~~l~~- 171 (297)
..+..+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +. . .++. .|..+.+..
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-------~--~vi~~~~~~~~~~~~~i~~~ 238 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GA-------D--LVLQISKESPQEIARKVEGQ 238 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC-------S--EEEECSSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC-------C--EEEcCcccccchHHHHHHHH
Confidence 35678999999875 67777888776555899999999999998864 21 1 1221 122222322
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+.+|+|+-... . ...++. +.+.|+++|.++.-.
T Consensus 239 ~~~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 239 LGCKPEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLVG 273 (356)
T ss_dssp HTSCCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECS
T ss_pred hCCCCCEEEECCC-----C-------hHHHHH-HHHHhcCCCEEEEEe
Confidence 2256999985432 1 134556 578999999997653
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0078 Score=55.48 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=64.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ..+.+|+
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT------HVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCC------EEecCCccCHHHHHHHhcCCCCcE
Confidence 5678999999876 67777888766555899999999999999874 211 0011111233333433 2337999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-... . .+.++. +.+.|+++|.+++-.
T Consensus 262 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTG-----S-------PEILKQ-GVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSC-----C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEeC
Confidence 985432 1 145666 678999999997653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.058 Score=48.66 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=92.1
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+|++|-||.|++..-+.+. +..-+.++|+|+...+.-+.+++ -+++.+|..+.-...-.+.|+|+..++
T Consensus 2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCCHhhCCcccEEEecCC
Confidence 6899999999988777664 46678899999999999888763 156789987654333357999998876
Q ss_pred -CCCC--------CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCc--CCchHHHHHHHHHHhhCCceeEEEEecC
Q 022451 185 -DPIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQVFKYVVPYSAHIP 253 (297)
Q Consensus 185 -~~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~--~~~~~~~~i~~~l~~~F~~v~~~~~~vp 253 (297)
.+++ ..+...| -.++++. -+.++|.-+++=|+ ++.. ...+.+..+++.|.+..=.+........
T Consensus 71 CQ~fS~ag~~~g~~d~R~~L-~~~~~r~--i~~~~Pk~~~~ENV--~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~ 145 (331)
T 3ubt_Y 71 SQSWSEGGSLRGIDDPRGKL-FYEYIRI--LKQKKPIFFLAENV--KGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNAN 145 (331)
T ss_dssp GGGTEETTEECCTTCGGGHH-HHHHHHH--HHHHCCSEEEEEEC--CGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGG
T ss_pred CCCcCCCCCccCCCCchhHH-HHHHHHH--HhccCCeEEEeeee--cccccccccchhhhhhhhhccCCcEEEEEecccc
Confidence 2221 1111123 2356664 35789987776564 2211 2345777888888765322333323333
Q ss_pred ccC---Cc-eeEEEEecCC
Q 022451 254 SFA---DT-WGWIMVSIYN 268 (297)
Q Consensus 254 ~~~---~~-~~~~~as~~~ 268 (297)
.|+ .+ .-|+++.+.+
T Consensus 146 ~yGvPQ~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 146 DYGVAQDRKRVFYIGFRKE 164 (331)
T ss_dssp GTTCSBCCEEEEEEEEEGG
T ss_pred cCCCCcccceEEEEEEcCC
Confidence 343 22 3467777643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.015 Score=53.23 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=65.2
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
..++.+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.- .. .-+.....|..+.+.. . ...+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG-a~------~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYG-AT------DIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHT-CC------EEECGGGSCHHHHHHHHTTTCCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC-Cc------eEEcCCCcCHHHHHHHHcCCCCC
Confidence 35678999999875 667788888766558999999999999998752 11 0001111344444433 2 3469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... .+ +.++. +.+.|+++|.++.-.
T Consensus 237 D~v~d~~g-----~~-------~~~~~-~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 237 DKVVIAGG-----DV-------HTFAQ-AVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEEECSS-----CT-------THHHH-HHHHEEEEEEEEECC
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHHHhcCCEEEEec
Confidence 99985432 11 34555 578999999987653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.016 Score=53.43 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----cCC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~----~~~ 174 (297)
..+.++||++|+|+ |.++.++++..+..+|++++.+++-.+++++. +... -+.....|..+.+.. ..+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV-GATA------TVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-TCSE------EECTTSSCHHHHHHSTTSSSTT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCCE------EECCCCcCHHHHHHhhhhccCC
Confidence 45678999999865 66778888877666999999999999999874 2110 011112344455543 234
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+-... . .+.++. +.+.|+++|.+++-.
T Consensus 253 g~Dvvid~~G-----~-------~~~~~~-~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 253 GVDVVIECAG-----V-------AETVKQ-STRLAKAGGTVVILG 284 (370)
T ss_dssp CEEEEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred CCCEEEECCC-----C-------HHHHHH-HHHHhccCCEEEEEe
Confidence 7999985431 1 145666 678999999998754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.014 Score=51.34 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
..+...|||..||+|+++.++.+. ..+++++|+++..++.|++++..
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHh
Confidence 356788999999999999999986 47899999999999999998753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=52.37 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
..+.++||++|+|+ |..+.++++..+..+|+++|.+++-.+.+++. +.. .+--...|..+.+.. ....+
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l-Ga~-------~~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV-GAD-------AAVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT-TCS-------EEEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC-------EEEcCCCcHHHHHHHHhCCCCC
Confidence 35678999999865 66777777765567999999999999999874 211 111111233333332 23479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... . .+.++. +.+.|+++|.++.-.
T Consensus 241 d~v~d~~G-----~-------~~~~~~-~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 241 TAVFDFVG-----A-------QSTIDT-AQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEEESSC-----C-------HHHHHH-HHHHEEEEEEEEECS
T ss_pred eEEEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEC
Confidence 99885432 1 145666 678999999998653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=52.16 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhc-c-CCC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-R-KES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-~~~l~~-~-~~~ 175 (297)
..+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.++++ +.. -+.....|. .+.+.. . ...
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~-------~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-GFE-------TIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-TCE-------EEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCc-------EEcCCCcchHHHHHHHHhCCCC
Confidence 35678999999876 77788888866555899999999999998864 211 011111232 333332 2 236
Q ss_pred ceEEEEcCCCCCCCC-C-ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 176 YDVIIGDLADPIEGG-P-CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~-p-~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+||-....+.... + ..++-....++. +.+.|+++|.+++-
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETPNGALNS-LFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCTTHHHHH-HHHHEEEEEEEECC
T ss_pred CCEEEECCCCccccccccccccccHHHHHH-HHHHHhcCCEEEEe
Confidence 999985543211000 0 000011235666 67899999998754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.048 Score=50.27 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~-~~~~y 176 (297)
.+..+||++|+|+ |.++.++++..+..+|+++|.+++-.+.|++. +.. .-+... ..|..+.++. ..+.+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF-GVN------EFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT-TCC------EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------EEEccccCchhHHHHHHHhcCCCC
Confidence 5678999999864 66777777766656899999999999999874 211 000000 1234444433 33479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+-... . .+.++. +.+.|+++ |.+++-.
T Consensus 265 D~vid~~g-----~-------~~~~~~-~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIG-----N-------VSVMRA-ALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred CEEEECCC-----C-------HHHHHH-HHHHhhccCCEEEEEc
Confidence 99985432 1 245666 67899997 9987653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.043 Score=49.73 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCCCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCc
Q 022451 100 HPNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~y 176 (297)
..+..+||++|+|++ .++..+++.....+|++++.+++-.+++++.-.. .-+.....|..+.+... ...+
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-------~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-------VTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-------EEEEC-CCCHHHHHHHHTTSSCE
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-------EEEeCCCCCHHHHhhhhcCCCCc
Confidence 356789999999864 4455556544568999999999988888875321 11223334555555442 3457
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|.++.+... .+.+.. ..+.|+++|.+++..
T Consensus 234 d~~~~~~~~------------~~~~~~-~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 234 QSAIVCAVA------------RIAFEQ-AVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEECCSC------------HHHHHH-HHHTEEEEEEEEECC
T ss_pred eEEEEeccC------------cchhhe-eheeecCCceEEEEe
Confidence 888876431 144555 578999999987654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.074 Score=48.99 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=61.1
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||++|+|+ |.++.++++..+ .+|++++.+++-.+.+++. +.. .++..+-.+++......+|+
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~~g~Dv 260 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKAL-GAD---------EVVNSRNADEMAAHLKSFDF 260 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TCS---------EEEETTCHHHHHTTTTCEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc---------EEeccccHHHHHHhhcCCCE
Confidence 35678999999875 667777787654 4799999999999988873 311 11211112333332357999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+-.... + ..++. +.+.|+++|.++.-
T Consensus 261 vid~~g~-----~-------~~~~~-~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTVAA-----P-------HNLDD-FTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECCSS-----C-------CCHHH-HHTTEEEEEEEEEC
T ss_pred EEECCCC-----H-------HHHHH-HHHHhccCCEEEEe
Confidence 9854432 1 11344 56899999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.071 Score=48.54 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-c----
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-R---- 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~-~---- 172 (297)
..+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.- .. .-+.... .|..+.+.. .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lG-a~------~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCG-AD------VTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT-CS------EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhC-CC------EEEcCcccccHHHHHHHHhcccc
Confidence 35678999999864 666777777664 46999999999999998642 11 0011110 233333322 1
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.+|+|+-.... ...++. +.+.|+++|.++.-.
T Consensus 238 g~g~D~vid~~g~------------~~~~~~-~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSGN------------EKCITI-GINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSCC------------HHHHHH-HHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCCC------------HHHHHH-HHHHHhcCCEEEEEe
Confidence 3569999854321 134556 578999999987653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.078 Score=48.69 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=63.1
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhc-cCC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~----~Da~~~l~~-~~~ 174 (297)
.+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +.. .+ +-. .|..+.+.. ..+
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~-------~v-i~~~~~~~~~~~~~~~~~~~ 261 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GAT-------DF-VNPNDHSEPISQVLSKMTNG 261 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCC-------EE-ECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCc-------eE-EeccccchhHHHHHHHHhCC
Confidence 4578999999764 66677777766555899999999999998864 211 00 101 133333332 224
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
.+|+|+-... . .+.++. +.+.|+++ |.++.-.
T Consensus 262 g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 262 GVDFSLECVG-----N-------VGVMRN-ALESCLKGWGVSVLVG 294 (374)
T ss_dssp CBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred CCCEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEEc
Confidence 7999985432 1 144566 67899999 9987653
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.16 Score=48.81 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh------------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------------ 170 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~------------ 170 (297)
.-++++|-||.|++..-+.+. +...|.++|+|+...+.-+.+|.. .|...++.+|.+++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC------DPATHHFNEDIRDITLSHQEGVSDEAAA 160 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC------CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc------CCCcceeccchhhhhhccccccchhhHH
Confidence 458999999999998887764 456689999999999998887742 2455678899988752
Q ss_pred ----ccCCCceEEEEcCC-CCCC-CC----------------CccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcC--
Q 022451 171 ----SRKESYDVIIGDLA-DPIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS-- 226 (297)
Q Consensus 171 ----~~~~~yD~Ii~D~~-~~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~-- 226 (297)
.....+|+|+..++ .+++ .+ +...| -.++++. + +.++|.-+++=|+ ++...
T Consensus 161 ~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~L-f~e~~ri-I-~~~rPk~fvlENV--~gl~s~~ 235 (482)
T 3me5_A 161 EHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTL-FFDVVRI-I-DARRPAMFVLENV--KNLKSHD 235 (482)
T ss_dssp HHHHHHSCCCSEEEEECCCCCC------------------CTTTTSH-HHHHHHH-H-HHHCCSEEEEEEE--TTTTTGG
T ss_pred hhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccH-HHHHHHH-H-HHcCCcEEEEeCc--HHHhccc
Confidence 12246899999887 2221 11 11122 2355554 3 5678987776665 22222
Q ss_pred CchHHHHHHHHHHhh
Q 022451 227 HTEVFSCIYNTLRQV 241 (297)
Q Consensus 227 ~~~~~~~i~~~l~~~ 241 (297)
....+..+++.|.+.
T Consensus 236 ~g~~f~~i~~~L~~l 250 (482)
T 3me5_A 236 KGKTFRIIMQTLDEL 250 (482)
T ss_dssp GGHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHhcC
Confidence 245677788887754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.087 Score=48.37 Aligned_cols=96 Identities=9% Similarity=-0.016 Sum_probs=63.1
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-----cchHHHHhc-cC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-----~Da~~~l~~-~~ 173 (297)
.+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +.. .++. .|..+.+.. ..
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~---------~vi~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GAT---------ECLNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc---------EEEecccccchHHHHHHHHhC
Confidence 4578999999764 56677777765555899999999999998864 211 1111 233344432 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
+.+|+|+-... . .+.++. +.+.|+++ |.++.-.
T Consensus 260 gg~Dvvid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 260 GGVDYAVECAG-----R-------IETMMN-ALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred CCCCEEEECCC-----C-------HHHHHH-HHHHHhcCCCEEEEEc
Confidence 47999985432 1 145566 67899999 9987653
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.099 Score=48.05 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=63.1
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc-cCCCc
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~-~~~~y 176 (297)
.+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +... -+... ..|..+.+.. ....+
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GATD------CLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCSE------EECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCcE------EEccccccchHHHHHHHHhCCCc
Confidence 4578999999764 56677778776655899999999999998864 2110 00000 0233333432 23479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
|+|+-... . .+.++. +.+.|+++ |.+++-.
T Consensus 267 Dvvid~~G-----~-------~~~~~~-~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 267 DYSLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SEEEESSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred cEEEECCC-----C-------HHHHHH-HHHHhhcCCCEEEEEC
Confidence 99985432 1 145566 67899999 9987643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.1 Score=48.39 Aligned_cols=110 Identities=12% Similarity=0.143 Sum_probs=66.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc--cCCC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES--RKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l~~--~~~~ 175 (297)
..+.++||++|+|+ |.++.++++..+..+|+++|.+++-++.+++. +.. .+.....| ..+.+.. ....
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~-------~i~~~~~~~~~~~v~~~t~g~g 254 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFE-------IADLSLDTPLHEQIAALLGEPE 254 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCE-------EEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CCc-------EEccCCcchHHHHHHHHhCCCC
Confidence 35678999999865 67788888876666899999999999999874 210 01100112 2333432 2346
Q ss_pred ceEEEEcCCCCCCCCC---ccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 176 YDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+||-....+..... .......+.++. +.+.|+++|.+++-
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEEC
T ss_pred CCEEEECCCCcccccccccccccchHHHHHH-HHHHHhcCCEEEEe
Confidence 9999865432210000 000111235666 67899999998764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.27 E-value=0.098 Score=48.02 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=63.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-----cchHHHHhc-cC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-----~Da~~~l~~-~~ 173 (297)
.+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +.. .++. .|..+.+.. ..
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GAT---------ECVNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCc---------eEecccccchhHHHHHHHHhC
Confidence 4578999999765 66677777766555899999999999998864 211 1111 233333432 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
..+|+|+-... . .+.++. +.+.|+++ |.++.-.
T Consensus 260 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 260 GGVDFSFEVIG-----R-------LDTMVT-ALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SCBSEEEECSC-----C-------HHHHHH-HHHHBCTTTCEEEECS
T ss_pred CCCcEEEECCC-----C-------HHHHHH-HHHHhhcCCcEEEEec
Confidence 47999985432 1 144566 57899999 9987653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.1 Score=47.83 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=62.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-----cchHHHHhc-cC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELES-RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-----~Da~~~l~~-~~ 173 (297)
.+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. +.. .++. .|..+.+.. ..
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF-GAT---------ECINPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH-TCS---------EEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc---------eEeccccccccHHHHHHHHhC
Confidence 4578999999764 56677777765555899999999999998864 211 1111 233344433 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
..+|+|+-... . .+.++. +.+.|+++ |.++.-.
T Consensus 259 ~g~D~vid~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 259 GGVDYSFECIG-----N-------VKVMRA-ALEACHKGWGVSVVVG 292 (373)
T ss_dssp SCBSEEEECSC-----C-------HHHHHH-HHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCC-----c-------HHHHHH-HHHhhccCCcEEEEEe
Confidence 47999985432 1 144566 67899999 9987653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.056 Score=49.19 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=61.6
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +. . .++ .|. +.+. +.+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga-------~--~v~-~~~-~~~~---~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALSM-GV-------K--HFY-TDP-KQCK---EELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHHT-TC-------S--EEE-SSG-GGCC---SCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHhc-CC-------C--eec-CCH-HHHh---cCCCE
Confidence 35678999999875 667788888765 4899999999999998873 21 1 122 342 2222 27999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-....+ +.++. +.+.|+++|.++.-.
T Consensus 238 vid~~g~~------------~~~~~-~~~~l~~~G~iv~~G 265 (348)
T 3two_A 238 IISTIPTH------------YDLKD-YLKLLTYNGDLALVG 265 (348)
T ss_dssp EEECCCSC------------CCHHH-HHTTEEEEEEEEECC
T ss_pred EEECCCcH------------HHHHH-HHHHHhcCCEEEEEC
Confidence 98543321 12344 578999999998653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.22 Score=45.82 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=57.8
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+++||++|+|+-+ .+..+++..+. +|+++|.+++-.+.+++.+.. .+..+..+...+.+. -..+|+||
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~DvVI 235 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--------RVELLYSNSAEIETA-VAEADLLI 235 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GSEEEECCHHHHHHH-HHTCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--------eeEeeeCCHHHHHHH-HcCCCEEE
Confidence 46899999986333 34444444444 899999999988887765432 122232222122111 12589998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.....+. .+...+.+.+ ..+.++++|+++--
T Consensus 236 ~~~~~~~--~~~~~li~~~-----~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 236 GAVLVPG--RRAPILVPAS-----LVEQMRTGSVIVDV 266 (361)
T ss_dssp ECCCCTT--SSCCCCBCHH-----HHTTSCTTCEEEET
T ss_pred ECCCcCC--CCCCeecCHH-----HHhhCCCCCEEEEE
Confidence 7665433 1122444433 34678899987643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.08 Score=48.51 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc--cCC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES--RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~--~~~ 174 (297)
.+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +.. .++. .|..+.+.. ...
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKLDRAFAL-GAD---------HGINRLEEDWVERVYALTGDR 256 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TCS---------EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhHHHHHHc-CCC---------EEEcCCcccHHHHHHHHhCCC
Confidence 4678999999775 666777777665 5899999999999998874 211 1111 233333432 234
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+-... . +.++. +.+.|+++|.++.-.
T Consensus 257 g~D~vid~~g------~-------~~~~~-~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 257 GADHILEIAG------G-------AGLGQ-SLKAVAPDGRISVIG 287 (363)
T ss_dssp CEEEEEEETT------S-------SCHHH-HHHHEEEEEEEEEEC
T ss_pred CceEEEECCC------h-------HHHHH-HHHHhhcCCEEEEEe
Confidence 7999986542 1 11344 567899999988654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.028 Score=51.45 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=59.4
Q ss_pred CeEEEEccch-hHHH-HHHH-hcCCCcEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 104 KTIFIMGGGE-GSTA-REIL-RHKTVEKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G~-G~~~-~~l~-~~~~~~~v~~VEid~~---vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
++||++|+|+ |.++ .+++ +..+..+|++++.+++ -.+.+++. +.. .+.....|..+ +....+.+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-Ga~-------~v~~~~~~~~~-i~~~~gg~D 244 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-DAT-------YVDSRQTPVED-VPDVYEQMD 244 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-TCE-------EEETTTSCGGG-HHHHSCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-CCc-------ccCCCccCHHH-HHHhCCCCC
Confidence 8999999753 6667 7888 7665556999999988 78888764 211 11000123333 322123799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-... . ...++. +.+.|+++|.++.-.
T Consensus 245 vvid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 245 FIYEATG-----F-------PKHAIQ-SVQALAPNGVGALLG 273 (357)
T ss_dssp EEEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred EEEECCC-----C-------hHHHHH-HHHHHhcCCEEEEEe
Confidence 9984432 1 134566 678999999987653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.018 Score=50.64 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=42.8
Q ss_pred CeEEEEcchHHHHhcc-CCCceEEEEcCCCCCCCCCccCc--------ccHHHHHHHHcccCCCCcEEEEec
Q 022451 157 RLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 157 rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p~~~L--------~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++.+|+.++|+.. ++++|+|+.|+|-.........+ +..++++. +.++|+|+|.++++.
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~-~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHH-HHHHhcCCeEEEEEc
Confidence 4568999999998763 46899999999732210000011 23456777 689999999999874
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.042 Score=51.26 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCce
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD 177 (297)
.+..+||++|+|+ |.++.++++..+..+|++++.+++-.+.+++.-... . +.....|..+.+.. . ...+|
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~--v-----i~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADH--V-----IDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE--E-----ECTTTSCHHHHHHHHTTTCCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE--E-----EcCCCCCHHHHHHHHhCCCCCC
Confidence 4578999999864 566777787766669999999999999998752110 0 00001344444433 2 34699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHH---HHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEF---VVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~---~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... + ...++. ++.+.++++|.++.-.
T Consensus 285 ~vid~~g~-----~------~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 285 LFLEATGV-----P------QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEEECSSC-----H------HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEEECCCC-----c------HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99854321 1 012333 0234449999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.041 Score=49.71 Aligned_cols=98 Identities=23% Similarity=0.226 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCc
Q 022451 100 HPNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~y 176 (297)
..+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+.+.++.. .-+.....|..+.+.. ..+.+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGGAEKCRFLVEELGFD------GAIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCCS------EEEETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCC------EEEECCCHHHHHHHHHhcCCCc
Confidence 356789999997 45667777777654 49999999999888883333211 0011111333444432 34579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-... . +.++. +.+.|+++|.++.-
T Consensus 220 d~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 220 DVFFDNVG------G-------EILDT-VLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEESSC------H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred eEEEECCC------c-------chHHH-HHHHHhhCCEEEEE
Confidence 99886432 1 34566 67899999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.027 Score=51.16 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=45.9
Q ss_pred CCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCC-CccC-------cccHHHHHHHHcccCCCCcEEEEecC
Q 022451 154 SDPRLELVINDARAELES-RKESYDVIIGDLADPIEGG-PCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 154 ~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~-p~~~-------L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
...+.+++.+|+.+.++. .++++|+|++|+|-..... .-.. -+-.+.++. ++++|+|||.++++.+
T Consensus 11 ~~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~-~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 11 TTSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFG 85 (323)
T ss_dssp ECSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEEC
T ss_pred ecCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHH-HHHHCcCCcEEEEEEC
Confidence 346789999999998875 3568999999997321100 0000 023456777 6899999999999864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.043 Score=45.49 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
.+.++||+.|+ |.|..+.++++..+ .+|++++.+++..+.+++. +. +..+.....|..+.+.. . ...+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~------~~~~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV------EYVGDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC------SEEEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEeeCCcHHHHHHHHHHhCCCCC
Confidence 45788999994 44555555555443 5899999999988877653 11 00011111233333322 1 2469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+... ++ +.++. +.+.|+++|.++.-.
T Consensus 109 D~vi~~~------g~-------~~~~~-~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 109 DVVLNSL------AG-------EAIQR-GVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEECC------CT-------HHHHH-HHHTEEEEEEEEECS
T ss_pred eEEEECC------ch-------HHHHH-HHHHhccCCEEEEEc
Confidence 9999653 11 34566 678999999987653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.11 Score=48.03 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE------cchHHHHhc-c
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI------NDARAELES-R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~------~Da~~~l~~-~ 172 (297)
.+.++||++|+| .|..+.++++..+..+|++++.+++-.+.+++. +.. .++. .|..+.+.. .
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GAD---------LTLNRRETSVEERRKAIMDIT 263 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCS---------EEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CCc---------EEEeccccCcchHHHHHHHHh
Confidence 456899999965 356677777766546999999999999998864 211 1221 233333333 2
Q ss_pred -CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 -~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+|+|+-.... + +.++. +.+.|+++|.++.-.
T Consensus 264 ~g~g~Dvvid~~g~-----~-------~~~~~-~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 264 HGRGADFILEATGD-----S-------RALLE-GSELLRRGGFYSVAG 298 (380)
T ss_dssp TTSCEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred CCCCCcEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence 2369999854321 1 23455 568899999987653
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.17 Score=45.60 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
..++++||+.|+|+ |.++.++++..+...+++++.+++-.++|+++-. . .-+.....|..+.++. ....+
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-~------~~i~~~~~~~~~~~~~~~~~~g~ 230 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-M------QTFNSSEMSAPQMQSVLRELRFN 230 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-S------EEEETTTSCHHHHHHHHGGGCSS
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-e------EEEeCCCCCHHHHHHhhcccCCc
Confidence 45678999999875 4456777777777788999999999999988521 1 0111112333333322 23457
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... . .+.++. +.+.|+++|.+++..
T Consensus 231 d~v~d~~G-----~-------~~~~~~-~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 231 QLILETAG-----V-------PQTVEL-AVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEEECSC-----S-------HHHHHH-HHHHCCTTCEEEECC
T ss_pred cccccccc-----c-------cchhhh-hhheecCCeEEEEEe
Confidence 87764431 1 145666 578999999998764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.035 Score=50.44 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +... .. +.+ ..|..+.+......+|+
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~~-~~-d~~----~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKEL-GADL-VV-NPL----KEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TCSE-EE-CTT----TSCHHHHHHHHHSSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHC-CCCE-Ee-cCC----CccHHHHHHHHhCCCCE
Confidence 35678999999853 666777777654 5899999999999988863 2110 00 000 12333333221147999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+.... .+ +.++. +.+.|+++|.++.-.
T Consensus 234 vid~~g-----~~-------~~~~~-~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 234 AVVTAV-----SK-------PAFQS-AYNSIRRGGACVLVG 261 (339)
T ss_dssp EEESSC-----CH-------HHHHH-HHHHEEEEEEEEECC
T ss_pred EEECCC-----CH-------HHHHH-HHHHhhcCCEEEEec
Confidence 986542 11 34555 568899999887653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.19 Score=39.27 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCce
Q 022451 103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD 177 (297)
..+|+++|+|. |. +++.+.+. ..+|+++|.|++.++.+++ ..+.++.+|+.+ .+... -..+|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~-----------~g~~~i~gd~~~~~~l~~a~i~~ad 73 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE-----------RGVRAVLGNAANEEIMQLAHLECAK 73 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH-----------TTCEEEESCTTSHHHHHHTTGGGCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH-----------cCCCEEECCCCCHHHHHhcCcccCC
Confidence 46899999984 33 34444443 3589999999999887775 235678888743 34432 25799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++..++.. .. ...-. ..+.+.|+..++...
T Consensus 74 ~vi~~~~~~~--------~n-~~~~~-~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 74 WLILTIPNGY--------EA-GEIVA-SARAKNPDIEIIARA 105 (140)
T ss_dssp EEEECCSCHH--------HH-HHHHH-HHHHHCSSSEEEEEE
T ss_pred EEEEECCChH--------HH-HHHHH-HHHHHCCCCeEEEEE
Confidence 9998765321 01 11222 346678888777654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.099 Score=47.97 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=62.1
Q ss_pred CCCeEEEEc-c-chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 102 NPKTIFIMG-G-GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG-~-G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
+.++||++| + |.|.++.++++.....+|++++.+++-.+.+++. +... .+ +. ..|..+.+.. ..+.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~-vi-~~-----~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHH-VI-DH-----SKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSE-EE-CT-----TSCHHHHHHTTCSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCE-EE-eC-----CCCHHHHHHHhcCCCceE
Confidence 457899998 3 4567778888753357999999999999998874 2110 00 01 1233344433 3357998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+-... ..+.++. +.++|+++|.++.-
T Consensus 243 vid~~g------------~~~~~~~-~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTTH------------TDKHAAE-IADLIAPQGRFCLI 269 (363)
T ss_dssp EEECSC------------HHHHHHH-HHHHSCTTCEEEEC
T ss_pred EEECCC------------chhhHHH-HHHHhcCCCEEEEE
Confidence 875431 1145666 67899999999865
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.083 Score=42.95 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=69.6
Q ss_pred hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc----C
Q 022451 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR----K 173 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~----~ 173 (297)
....-+..||+||.|.|-+=..+.+..|..+|.++|--- +-| +.. --|.-.++.+|+++.+... .
T Consensus 36 ~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~------~~h---p~~--~P~~e~~ilGdi~~tL~~~~~r~g 104 (174)
T 3iht_A 36 QTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAV------ASH---PDS--TPPEAQLILGDIRETLPATLERFG 104 (174)
T ss_dssp HTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSC------CCC---GGG--CCCGGGEEESCHHHHHHHHHHHHC
T ss_pred HhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeee------ccC---CCC--CCchHheecccHHHHHHHHHHhcC
Confidence 344567889999999999999999988999999999731 111 111 1244579999999988763 3
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
.+.-++=.|.-... +.....+...+.-.+..+|.|||+++-
T Consensus 105 ~~a~LaHaD~G~g~---~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 105 ATASLVHADLGGHN---REKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp SCEEEEEECCCCSC---HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 44555555654322 111222333333336799999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.46 Score=42.74 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhccCCCceEE
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~~~~~yD~I 179 (297)
..+|.+||+| ++.++..+.+.....+|+++|.+++.++.+++. +. +.-...|..+ .+ ...|+|
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~---------~~~~~~~~~~~~~----~~aDvV 98 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GI---------IDEGTTSIAKVED----FSPDFV 98 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TS---------CSEEESCTTGGGG----GCCSEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CC---------cchhcCCHHHHhh----ccCCEE
Confidence 4789999998 455666666643223899999999988877753 11 0012234333 22 358999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|+..+.. ...+.++. +...|+++.+++-
T Consensus 99 ilavp~~---------~~~~vl~~-l~~~l~~~~iv~d 126 (314)
T 3ggo_A 99 MLSSPVR---------TFREIAKK-LSYILSEDATVTD 126 (314)
T ss_dssp EECSCGG---------GHHHHHHH-HHHHSCTTCEEEE
T ss_pred EEeCCHH---------HHHHHHHH-HhhccCCCcEEEE
Confidence 9986521 13467788 6888998877654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.065 Score=48.18 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcE--EEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEK--VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~--v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~ 175 (297)
..+.++++|-+|.|++...+.+. +... |.++|+|+...+..+.+++ ...++.+|..++... ....
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~---------~~~~~~~DI~~i~~~~i~~~~~ 83 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ---------GKIMYVGDVRSVTQKHIQEWGP 83 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT---------TCEEEECCGGGCCHHHHHHTCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC---------CCceeCCChHHccHHHhcccCC
Confidence 44668999999999998877764 2333 6899999999998887653 346778898765322 1246
Q ss_pred ceEEEEcCC
Q 022451 176 YDVIIGDLA 184 (297)
Q Consensus 176 yD~Ii~D~~ 184 (297)
+|+|+..++
T Consensus 84 ~Dll~ggpP 92 (295)
T 2qrv_A 84 FDLVIGGSP 92 (295)
T ss_dssp CSEEEECCC
T ss_pred cCEEEecCC
Confidence 999999987
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.11 Score=47.09 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=60.0
Q ss_pred CCCeEEEEccch-hHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhccCCC
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELESRKES 175 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~----~Da~~~l~~~~~~ 175 (297)
+.++||++|+|+ |.++.++++.. +..+|++++.+++-.+.+++. +.. .++. .|...-+. ....
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~-~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-GAD---------YVSEMKDAESLINKLT-DGLG 238 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TCS---------EEECHHHHHHHHHHHH-TTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CCC---------EEeccccchHHHHHhh-cCCC
Confidence 678999999864 56677777754 135799999999999998873 211 1121 12112222 1347
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+|+-... . .+.++. +.+.|+++|.++.-
T Consensus 239 ~D~vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLVG-----T-------EETTYN-LGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEESSC-----C-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred ccEEEECCC-----C-------hHHHHH-HHHHhhcCCEEEEe
Confidence 999985532 1 135566 67899999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.038 Score=50.26 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=44.7
Q ss_pred CCCeEEE-EcchHHHHhcc-CCCceEEEEcCCCCCCCCC---ccCc--ccHHHHHHHHcccCCCCcEEEEecC
Q 022451 155 DPRLELV-INDARAELESR-KESYDVIIGDLADPIEGGP---CYKL--YTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 155 ~~rv~~~-~~Da~~~l~~~-~~~yD~Ii~D~~~~~~~~p---~~~L--~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+...+++ .+|+.++|+.. ++++|+|+.|+|-....+. .... +..+.+.. +++.|+|||.++++..
T Consensus 36 ~~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~-~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 36 GTTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGG 107 (319)
T ss_dssp CCEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEEC
T ss_pred cccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHH-HHHHcCCCeEEEEEcC
Confidence 3457888 99999998763 4689999999973221000 0011 23466777 6899999999999875
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.045 Score=49.81 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCceE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~yD~ 178 (297)
+.++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. +... .. +.+ ..|..+.+.. . ...+|+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~-Ga~~-~~-~~~----~~~~~~~v~~~~~g~g~D~ 239 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV-GADY-VI-NPF----EEDVVKEVMDITDGNGVDV 239 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH-TCSE-EE-CTT----TSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE-EE-CCC----CcCHHHHHHHHcCCCCCCE
Confidence 678999999853 56677777766544899999999999988864 2110 00 000 1233344433 2 246999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-... . .+.++. +.+.|+++|.++.-.
T Consensus 240 vid~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 240 FLEFSG-----A-------PKALEQ-GLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred EEECCC-----C-------HHHHHH-HHHHHhcCCEEEEEc
Confidence 986532 1 144566 578899999987653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.13 Score=46.97 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=58.6
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-HHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~-~~l~~~~~~yD 177 (297)
..+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++. +.. .++..+-. ++...-.+.+|
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~G-a~Vi~~~~~~~~~~~~~~l-Ga~---------~v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKM-GAD---------HYIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TCS---------EEEEGGGTSCHHHHSCSCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCC---------EEEcCcCchHHHHHhhcCCC
Confidence 35678999999753 666777777654 4799999999988888873 211 11211101 12222225799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+-...... + .. ++. +.+.|+++|.++.-
T Consensus 246 ~vid~~g~~~---~--~~-----~~~-~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSLT---D--ID-----FNI-MPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCST---T--CC-----TTT-GGGGEEEEEEEEEC
T ss_pred EEEECCCCCc---H--HH-----HHH-HHHHhcCCCEEEEe
Confidence 9986543200 1 11 122 46789999988754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.051 Score=48.61 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCCeEEEEcchHHHHhcc-CCCceEEEEcCCCC-CCC-C-CccCc--------c---cHHHHHHHHcccCCCCcEEEEec
Q 022451 155 DPRLELVINDARAELESR-KESYDVIIGDLADP-IEG-G-PCYKL--------Y---TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 155 ~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~~~-~~~-~-p~~~L--------~---t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++++++|+.++++.. +++||+|++|+|-. ... . ....+ + -.++++. +.++|+|||.++++.
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~-~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWRE-VFRLLVPGGRLVIVV 97 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 457899999999988653 47899999998731 100 0 00000 0 1245667 689999999999886
Q ss_pred C
Q 022451 220 G 220 (297)
Q Consensus 220 ~ 220 (297)
+
T Consensus 98 ~ 98 (297)
T 2zig_A 98 G 98 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.41 Score=44.23 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhccCCCce
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESYD 177 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~~~~~yD 177 (297)
.+++|+++|+|. |..+...++..+ .+|+++|.++.-.+.+++.++. .+.... .|..+.+ ...|
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G-a~V~~~d~~~~~l~~~~~~~g~--------~~~~~~~~~~~l~~~l----~~aD 233 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG-ATVTVLDINIDKLRQLDAEFCG--------RIHTRYSSAYELEGAV----KRAD 233 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTT--------SSEEEECCHHHHHHHH----HHCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhcCC--------eeEeccCCHHHHHHHH----cCCC
Confidence 478999999863 223334444444 4899999999988877765432 122221 1222333 3589
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+.....|.. ....+.+.+ +.+.++|||+++ +.
T Consensus 234 vVi~~~~~p~~--~t~~li~~~-----~l~~mk~g~~iV-~v 267 (377)
T 2vhw_A 234 LVIGAVLVPGA--KAPKLVSNS-----LVAHMKPGAVLV-DI 267 (377)
T ss_dssp EEEECCCCTTS--CCCCCBCHH-----HHTTSCTTCEEE-EG
T ss_pred EEEECCCcCCC--CCcceecHH-----HHhcCCCCcEEE-EE
Confidence 99986644431 122455543 345678999875 44
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.19 Score=45.89 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.++.. .+ +-..| .+.+....+.+|+|+
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~G-a~Vi~~~~~~~~~~~~~~~lGa~-------~v-i~~~~-~~~~~~~~~g~D~vi 249 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGAD-------DY-VIGSD-QAKMSELADSLDYVI 249 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSTTHHHHHHTTSCCS-------CE-EETTC-HHHHHHSTTTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHcCCc-------ee-ecccc-HHHHHHhcCCCCEEE
Confidence 678999999753 455666776654 58999999998888887444321 11 11122 233433335799998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-....+. . ++. +.+.|+++|.++.-.
T Consensus 250 d~~g~~~------~------~~~-~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 250 DTVPVHH------A------LEP-YLSLLKLDGKLILMG 275 (357)
T ss_dssp ECCCSCC------C------SHH-HHTTEEEEEEEEECS
T ss_pred ECCCChH------H------HHH-HHHHhccCCEEEEeC
Confidence 5443211 1 223 468899999987653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=1.8 Score=45.16 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=92.4
Q ss_pred CCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----------
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------- 171 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---------- 171 (297)
.-++++|-||.|++..-+.+. +. ..+.++|+|+...+..+.+| |...++.+|..+++..
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~---------p~~~~~~~DI~~l~~~~~~~di~~~~ 609 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN---------PGSTVFTEDCNILLKLVMAGETTNSR 609 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC---------TTSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC---------CCCccccccHHHHhhhccchhhhhhh
Confidence 457999999999988777664 33 46789999999999888775 4556788887765321
Q ss_pred -----cCCCceEEEEcCC-CCCCC-CC---------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH
Q 022451 172 -----RKESYDVIIGDLA-DPIEG-GP---------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (297)
Q Consensus 172 -----~~~~yD~Ii~D~~-~~~~~-~p---------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~ 235 (297)
....+|+|+..++ .+++. +. ...| -.+|++. + +.++|.-+++=|+..-..+.....+..++
T Consensus 610 ~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L-~~~~~ri-v-~~~rPk~~llENV~glls~~~~~~~~~i~ 686 (1002)
T 3swr_A 610 GQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSL-VVSFLSY-C-DYYRPRFFLLENVRNFVSFKRSMVLKLTL 686 (1002)
T ss_dssp CCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSH-HHHHHHH-H-HHHCCSEEEEEEEGGGGTTGGGHHHHHHH
T ss_pred hhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHH-HHHHHHH-H-HHhCCCEEEEeccHHHhccCcchHHHHHH
Confidence 1236899999887 23311 11 0112 2356665 3 57899888876652110012244667777
Q ss_pred HHHHhhCCceeEEEEecCccC---C-ceeEEEEecCC
Q 022451 236 NTLRQVFKYVVPYSAHIPSFA---D-TWGWIMVSIYN 268 (297)
Q Consensus 236 ~~l~~~F~~v~~~~~~vp~~~---~-~~~~~~as~~~ 268 (297)
+.|.+..=.+.........|| . ...|++|++.+
T Consensus 687 ~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~g 723 (1002)
T 3swr_A 687 RCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPG 723 (1002)
T ss_dssp HHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECTT
T ss_pred HHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeCC
Confidence 777765333333322333343 1 24567777543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.12 Score=46.59 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=60.5
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc-cCC
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~-~~~ 174 (297)
...++||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +. ...+-. .|..+.+.. ..+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g~--------~~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF--------DAAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC--------SEEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC--------cEEEecCCHHHHHHHHHHHhCC
Confidence 45789999997 45666666666544 5899999999988888553 21 111111 233344432 234
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+++.... . +.++. +.+.|+++|.+++-.
T Consensus 214 ~~d~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 214 GYDCYFDNVG------G-------EFLNT-VLSQMKDFGKIAICG 244 (333)
T ss_dssp CEEEEEESSC------H-------HHHHH-HHTTEEEEEEEEECC
T ss_pred CCeEEEECCC------h-------HHHHH-HHHHHhcCCEEEEEe
Confidence 7999986642 1 23556 578999999987653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.083 Score=47.92 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~I 179 (297)
++++||++|+|+ |..+.++++..+..+|++++.+++-.+.+++. ... .. +.+ ..|..+.+.. ....+|+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~--v~-~~~----~~~~~~~~~~~~~~g~D~v 235 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADR--LV-NPL----EEDLLEVVRRVTGSGVEVL 235 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSE--EE-CTT----TSCHHHHHHHHHSSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHh--cc-CcC----ccCHHHHHHHhcCCCCCEE
Confidence 678999999753 56677777765544899999999888877764 211 00 000 1233333322 24569999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-... . .+.++. +.+.|+++|.++.-.
T Consensus 236 id~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 236 LEFSG-----N-------EAAIHQ-GLMALIPGGEARILG 262 (343)
T ss_dssp EECSC-----C-------HHHHHH-HHHHEEEEEEEEECC
T ss_pred EECCC-----C-------HHHHHH-HHHHHhcCCEEEEEe
Confidence 85432 1 144566 578899999887653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.23 Score=46.18 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=57.1
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-C-CCeEEEE----c----chHHHHh
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-D-PRLELVI----N----DARAELE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-~-~rv~~~~----~----Da~~~l~ 170 (297)
++.+|++||+|.-+ .+..+++..+ .+|+++|.++...+.+++. +..-..++ + ....-+. . .-...+.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~ 260 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQALE 260 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence 57899999998433 3444444343 5899999999988888763 21100000 0 0000000 0 0011122
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+.-...|+||.-...|. .+...|++++.+ +.++||.+++
T Consensus 261 e~l~~aDIVI~tv~iPg--~~ap~Lvt~emv-----~~MkpGsVIV 299 (381)
T 3p2y_A 261 DAITKFDIVITTALVPG--RPAPRLVTAAAA-----TGMQPGSVVV 299 (381)
T ss_dssp HHHTTCSEEEECCCCTT--SCCCCCBCHHHH-----HTSCTTCEEE
T ss_pred HHHhcCCEEEECCCCCC--cccceeecHHHH-----hcCCCCcEEE
Confidence 22367999998764443 223367777644 4567777664
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.051 Score=49.30 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=61.2
Q ss_pred CCCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCC
Q 022451 100 HPNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~ 175 (297)
..+.++||++|+| .|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-ga~------~~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHTEELLRL-GAA------YVIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhC-CCc------EEEeCCcccHHHHHHHHhCCCC
Confidence 3567899999876 5667777777654 5899999999988888874 211 0011111233343332 2347
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|+-.... + .+.+. .++|+++|.++.-.
T Consensus 214 ~Dvvid~~g~-----~-------~~~~~--~~~l~~~G~iv~~G 243 (340)
T 3gms_A 214 ADAAIDSIGG-----P-------DGNEL--AFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEEESSCH-----H-------HHHHH--HHTEEEEEEEEECC
T ss_pred CcEEEECCCC-----h-------hHHHH--HHHhcCCCEEEEEe
Confidence 9999865321 1 22333 37899999997654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.28 Score=44.89 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=57.2
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+.++||++|+|+ |..+.++++..+ .+|++++.+++-.+.+++.++.. .-+-..| .+.+....+.+|+|+
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~lGa~--------~v~~~~~-~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGAD--------SFLVSRD-QEQMQAAAGTLDGII 256 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHTSCCS--------EEEETTC-HHHHHHTTTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcCCc--------eEEeccC-HHHHHHhhCCCCEEE
Confidence 678999999753 555667777654 58999999998888777444321 1111112 223433335799998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
-....+. . ++. +.+.|+++|.++.-
T Consensus 257 d~~g~~~-------~-----~~~-~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 257 DTVSAVH-------P-----LLP-LFGLLKSHGKLILV 281 (366)
T ss_dssp ECCSSCC-------C-----SHH-HHHHEEEEEEEEEC
T ss_pred ECCCcHH-------H-----HHH-HHHHHhcCCEEEEE
Confidence 6543211 1 123 35678899988754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.38 Score=43.51 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=61.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE---EcchHHHHhc-cCC
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV---INDARAELES-RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~---~~Da~~~l~~-~~~ 174 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +. ...+- ..|..+.+.. ...
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~~~~~~~~~~-g~--------~~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSI-GG--------EVFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSTTHHHHHHHT-TC--------CEEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCHHHHHHHHHc-CC--------ceEEecCccHhHHHHHHHHhCC
Confidence 45789999998 45666666666554 5899999999888888763 21 11111 1233334432 122
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+.... . .+.++. +.+.|+++|.++.-.
T Consensus 238 ~~D~vi~~~g-----~-------~~~~~~-~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 238 GAHGVINVSV-----S-------EAAIEA-STRYVRANGTTVLVG 269 (347)
T ss_dssp CEEEEEECSS-----C-------HHHHHH-HTTSEEEEEEEEECC
T ss_pred CCCEEEECCC-----c-------HHHHHH-HHHHHhcCCEEEEEe
Confidence 7999987642 1 145666 689999999987653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=46.87 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=61.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhc-cCC
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~---~Da~~~l~~-~~~ 174 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++.++.. ..+-. .|..+.+.. ...
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~~g~~--------~~~d~~~~~~~~~~~~~~~~~ 224 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGSKEKVDLLKTKFGFD--------DAFNYKEESDLTAALKRCFPN 224 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTSCCS--------EEEETTSCSCSHHHHHHHCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCc--------eEEecCCHHHHHHHHHHHhCC
Confidence 45789999996 56666777777654 58999999999888887433311 11111 133334432 235
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.+|+|+.... . +.++. +.+.|+++|.+++-
T Consensus 225 ~~d~vi~~~g------~-------~~~~~-~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 225 GIDIYFENVG------G-------KMLDA-VLVNMNMHGRIAVC 254 (345)
T ss_dssp CEEEEEESSC------H-------HHHHH-HHTTEEEEEEEEEC
T ss_pred CCcEEEECCC------H-------HHHHH-HHHHHhcCCEEEEE
Confidence 6999986532 1 34566 57899999998764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.082 Score=47.30 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++++||++|+|+ |.++.++++..+. +|++++ +++-.+.+++. +.. .++ .| .+-+ .+.+|+|
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l-Ga~---------~v~-~d-~~~v---~~g~Dvv 203 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR-GVR---------HLY-RE-PSQV---TQKYFAI 203 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH-TEE---------EEE-SS-GGGC---CSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc-CCC---------EEE-cC-HHHh---CCCccEE
Confidence 5678999999853 6677788876654 899999 88888888874 221 122 24 2222 5679998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-.... + . +.. +.++|+++|.++.-.
T Consensus 204 ~d~~g~-----~-------~-~~~-~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 204 FDAVNS-----Q-------N-AAA-LVPSLKANGHIICIQ 229 (315)
T ss_dssp ECC--------------------T-TGGGEEEEEEEEEEC
T ss_pred EECCCc-----h-------h-HHH-HHHHhcCCCEEEEEe
Confidence 843221 1 1 123 468999999987653
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.31 Score=45.74 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC-----CCC-CeEEEE---cch-----H
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF-----SDP-RLELVI---NDA-----R 166 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~-----~~~-rv~~~~---~Da-----~ 166 (297)
.+.+|++||+|.-+ .+..+++..+ .+|+++|.++...+.+++. +..-... ++. ....+. .+. .
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~~-G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~ 266 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG-AVVSATDVRPAAKEQVASL-GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA 266 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSTTHHHHHHHT-TCEECCCCC-----------------CHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc-CCceeecccccccccccccchhhhcchhhhhhhH
Confidence 57899999998433 3444555444 5899999999998888873 2110000 000 000000 000 0
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
.-+.+.-...|+||.-...|.. +...|++++ +-+.++||.+++
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~--~ap~Lvt~e-----mv~~Mk~GsVIV 309 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGR--PAPRLVTRE-----MLDSMKPGSVVV 309 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSS--CCCCCBCHH-----HHTTSCTTCEEE
T ss_pred hHHHHHhcCCCEEEECCcCCCC--CCCEEecHH-----HHhcCCCCCEEE
Confidence 1122222468999987655532 234677765 345678888775
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.13 Score=47.11 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=62.7
Q ss_pred CCCCCeEEEEc--cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCc
Q 022451 100 HPNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~y 176 (297)
..+.++||++| +|.|..+.++++..+ .+|++++.+++-.+.+++. +... -+.....|..+.+.. ....+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga~~------~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSSDEKSAFLKSL-GCDR------PINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCSE------EEETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHc-CCcE------EEecCChhHHHHHHHhcCCCC
Confidence 35678999999 456777778887654 4899999999988888873 2110 000001233333432 23579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... . +.++. +.+.|+++|.++.-.
T Consensus 233 D~vid~~g------~-------~~~~~-~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 233 DVVYESVG------G-------AMFDL-AVDALATKGRLIVIG 261 (362)
T ss_dssp EEEEECSC------T-------HHHHH-HHHHEEEEEEEEECC
T ss_pred CEEEECCC------H-------HHHHH-HHHHHhcCCEEEEEe
Confidence 99985532 1 34555 578899999987653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.1 Score=46.92 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....+
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-Ga~------~~~~~~~~~~~~~~~~~~~~~g~ 210 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSSPEKAAHAKAL-GAW------ETIDYSHEDVAKRVLELTDGKKC 210 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHhCCCCc
Confidence 45789999983 45667777777654 5899999999999988874 211 0011111333444433 23479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-.... +.++. +.++|+++|.++.-.
T Consensus 211 Dvvid~~g~-------------~~~~~-~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 211 PVVYDGVGQ-------------DTWLT-SLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEESSCG-------------GGHHH-HHTTEEEEEEEEECC
T ss_pred eEEEECCCh-------------HHHHH-HHHHhcCCCEEEEEe
Confidence 998864321 23445 578999999998764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.61 Score=36.08 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCeEEEEccch-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCce
Q 022451 103 PKTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD 177 (297)
.++|+++|+|. | .++..+.+. ..+|+++|.|++.++.+++. .+.++.+|+.+ .+... -+.+|
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~~~~~~~d 72 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE-----------GFDAVIADPTDESFYRSLDLEGVS 72 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT-----------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-----------CCcEEECCCCCHHHHHhCCcccCC
Confidence 35899999874 2 234444443 35899999999988776642 35677788743 34432 35799
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|+....
T Consensus 73 ~vi~~~~ 79 (141)
T 3llv_A 73 AVLITGS 79 (141)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.20 E-value=0.24 Score=43.86 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=59.2
Q ss_pred CCCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhccCCCc
Q 022451 100 HPNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELESRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-~~~l~~~~~~y 176 (297)
..+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +. . .++..+- .++.+.- +.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga--------~-~~~~~~~~~~~~~~~-~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLAL-GA--------E-EAATYAEVPERAKAW-GGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHT-TC--------S-EEEEGGGHHHHHHHT-TSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CC--------C-EEEECCcchhHHHHh-cCc
Confidence 356789999997 45667777777654 4899999999888888763 21 1 1222111 2232222 579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+- ... +.++. +.++|+++|.++.-
T Consensus 191 d~vid-~g~-------------~~~~~-~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 191 DLVLE-VRG-------------KEVEE-SLGLLAHGGRLVYI 217 (302)
T ss_dssp EEEEE-CSC-------------TTHHH-HHTTEEEEEEEEEC
T ss_pred eEEEE-CCH-------------HHHHH-HHHhhccCCEEEEE
Confidence 99986 431 11344 57899999988754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.49 Score=44.37 Aligned_cols=94 Identities=24% Similarity=0.312 Sum_probs=59.9
Q ss_pred CCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCce
Q 022451 103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD 177 (297)
..+|+++|+|- |. +++.|.+. ...|++||.|++.++.+++. .+.++.+|+.+ .|+.. -++.|
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~-----------g~~vi~GDat~~~~L~~agi~~A~ 70 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 70 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHT-----------TCCCEESCTTCHHHHHHTTTTTCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEcCCCCHHHHHhcCCCccC
Confidence 45799999974 32 34444443 35799999999999988752 25678899854 45443 36799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++...++. . + ..... ..+.+.|+..+++..
T Consensus 71 ~viv~~~~~~-----~---n-~~i~~-~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 71 VLINAIDDPQ-----T---N-LQLTE-MVKEHFPHLQIIARA 102 (413)
T ss_dssp EEEECCSSHH-----H---H-HHHHH-HHHHHCTTCEEEEEE
T ss_pred EEEECCCChH-----H---H-HHHHH-HHHHhCCCCeEEEEE
Confidence 9998765421 0 1 12222 346677776665543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.098 Score=47.19 Aligned_cols=97 Identities=14% Similarity=0.275 Sum_probs=61.8
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga~------~~~~~~~~~~~~~~~~~~~~~g~ 218 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVASTDEKLKIAKEY-GAE------YLINASKEDILRQVLKFTNGKGV 218 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc------EEEeCCCchHHHHHHHHhCCCCc
Confidence 46789999993 45667777777654 5899999999999988874 211 0011111344444433 23569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-.... +.++. +.++|+++|.++.-.
T Consensus 219 D~vid~~g~-------------~~~~~-~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 219 DASFDSVGK-------------DTFEI-SLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEEECCGG-------------GGHHH-HHHHEEEEEEEEECC
T ss_pred eEEEECCCh-------------HHHHH-HHHHhccCCEEEEEc
Confidence 999865321 23455 567899999987653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.16 Score=46.42 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=57.2
Q ss_pred CCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH---HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
+++||++|+|+ |..+.++++..+ .+|++++.++ +-.+.+++. +.. .+. ..|..+.+......+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~~~-ga~-------~v~--~~~~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG-LEVWMANRREPTEVEQTVIEET-KTN-------YYN--SSNGYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT-CEEEEEESSCCCHHHHHHHHHH-TCE-------EEE--CTTCSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCccchHHHHHHHHh-CCc-------eec--hHHHHHHHHHhCCCCCE
Confidence 78999999843 445566666554 4899999998 777877763 211 111 01222233222257999
Q ss_pred EEEcCCCCCCCCCccCcccHHHH-HHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFY-EFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~-~~~~~~~L~pgGvl~~~~ 219 (297)
|+..... + ..+ +. +.+.|+++|.++.-.
T Consensus 250 vid~~g~-----~-------~~~~~~-~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 250 IIDATGA-----D-------VNILGN-VIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEECCCC-----C-------THHHHH-HGGGEEEEEEEEECS
T ss_pred EEECCCC-----h-------HHHHHH-HHHHHhcCCEEEEEe
Confidence 9865432 1 134 55 678999999887653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.25 Score=44.79 Aligned_cols=95 Identities=20% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCeEEEEc-c-chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 102 NPKTIFIMG-G-GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG-~-G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
+.++||++| + |.|..+.++++..+ .+|++++.+++-.+.+++. +... .. +.+ .|..+.+.. ..+.+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~~-vi-~~~-----~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASRNETIEWTKKM-GADI-VL-NHK-----ESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCSHHHHHHHHHH-TCSE-EE-CTT-----SCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCcE-EE-ECC-----ccHHHHHHHhCCCCccE
Confidence 578999995 3 34666777777665 4899999999999999874 3110 00 011 233333333 3457998
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+-... ....++. +.++|+++|.++..
T Consensus 221 v~d~~g------------~~~~~~~-~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 221 VFCTFN------------TDMYYDD-MIQLVKPRGHIATI 247 (346)
T ss_dssp EEESSC------------HHHHHHH-HHHHEEEEEEEEES
T ss_pred EEECCC------------chHHHHH-HHHHhccCCEEEEE
Confidence 885431 1245566 67899999999754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.18 Score=45.66 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=61.5
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
...++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+... .|..+.+.. . ...+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga~------~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAATEFVKSV-GAD------IVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHH-TCS------EEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCc------EEecCc-hhHHHHHHHHhCCCCc
Confidence 45789999996 45677777777665 4899999999988888874 211 001111 344444433 2 2469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-.... +.++. +.++|+++|.++.-
T Consensus 229 Dvvid~~g~-------------~~~~~-~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 229 DMVVDPIGG-------------PAFDD-AVRTLASEGRLLVV 256 (342)
T ss_dssp EEEEESCC---------------CHHH-HHHTEEEEEEEEEC
T ss_pred eEEEECCch-------------hHHHH-HHHhhcCCCEEEEE
Confidence 999865431 12344 56899999998764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.28 Score=44.39 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=60.5
Q ss_pred CCCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-cC-
Q 022451 100 HPNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RK- 173 (297)
Q Consensus 100 ~~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~Da~~~l~~-~~- 173 (297)
..+.++||++|+| .|..+.++++.....+|++++.+++-.+.+++. +.. ..+-. .|..+.+.. ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GAD--------YVINASMQDPLAEIRRITES 238 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TCS--------EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCC--------EEecCCCccHHHHHHHHhcC
Confidence 3567899999987 444555666544135899999999998888763 211 11111 232222322 22
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+|+|+..... .+.++. +.+.|+++|.++.-.
T Consensus 239 ~~~d~vi~~~g~------------~~~~~~-~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 239 KGVDAVIDLNNS------------EKTLSV-YPKALAKQGKYVMVG 271 (347)
T ss_dssp SCEEEEEESCCC------------HHHHTT-GGGGEEEEEEEEECC
T ss_pred CCceEEEECCCC------------HHHHHH-HHHHHhcCCEEEEEC
Confidence 479999865421 134555 678999999987653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.8 Score=42.06 Aligned_cols=98 Identities=19% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+++|+++|+|. |..+...++..+ .+|+++|.+++-.+.+++.++ ..+.....+... +...-...|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G-a~V~~~d~~~~~~~~~~~~~g--------~~~~~~~~~~~~-l~~~~~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG-AQVTILDVNHKRLQYLDDVFG--------GRVITLTATEAN-IKKSVQHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTT--------TSEEEEECCHHH-HHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcC--------ceEEEecCCHHH-HHHHHhCCCEEE
Confidence 468999999853 223333344344 489999999988777765332 123232222211 111113589998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
.....+.. ....+.+.+ +.+.++++|+++
T Consensus 235 ~~~g~~~~--~~~~li~~~-----~l~~mk~gg~iV 263 (369)
T 2eez_A 235 GAVLVPGA--KAPKLVTRD-----MLSLMKEGAVIV 263 (369)
T ss_dssp ECCC---------CCSCHH-----HHTTSCTTCEEE
T ss_pred ECCCCCcc--ccchhHHHH-----HHHhhcCCCEEE
Confidence 87654320 112444443 345678899775
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.16 Score=46.20 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCC--CeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCC
Q 022451 101 PNP--KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKES 175 (297)
Q Consensus 101 ~~~--~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~ 175 (297)
.+. ++||+.|+ |.|..+.++++..+..+|++++.+++-.+.+++.++.. .-+.....|..+.+.. ..+.
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~------~~~d~~~~~~~~~~~~~~~~~ 230 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD------AAINYKKDNVAEQLRESCPAG 230 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS------EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc------eEEecCchHHHHHHHHhcCCC
Confidence 456 89999996 45556666666554448999999998888877643311 0001001233333332 2237
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+++.... . +.++. +.++|+++|.++.-
T Consensus 231 ~d~vi~~~G------~-------~~~~~-~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 231 VDVYFDNVG------G-------NISDT-VISQMNENSHIILC 259 (357)
T ss_dssp EEEEEESCC------H-------HHHHH-HHHTEEEEEEEEEC
T ss_pred CCEEEECCC------H-------HHHHH-HHHHhccCcEEEEE
Confidence 999986542 1 34566 57899999998764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.21 Score=46.75 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=40.6
Q ss_pred CCCCeEEEEccchhHHHHHHH-hcCC-CcEEEEEECCHHHHHHHHhhhhh
Q 022451 101 PNPKTIFIMGGGEGSTAREIL-RHKT-VEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~-~~~~-~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
.+...|+|+|++.|..+..++ +..+ ..+|.++|.+|...+..++++..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 456789999999999998877 4433 47999999999999999998765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.28 Score=44.40 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=60.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.++++||++|+ |.|..+.++++..+ .+|+++ .+++-.+.+++. +.. . +. ...|..+.+.. ....+
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~~~~~~~~l-Ga~------~-i~-~~~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGSDLEYVRDL-GAT------P-ID-ASREPEDYAAEHTAGQGF 217 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHHHHHHHHHH-TSE------E-EE-TTSCHHHHHHHHHTTSCE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHHHHHHHHHc-CCC------E-ec-cCCCHHHHHHHHhcCCCc
Confidence 45789999993 45677778887664 489999 888888888774 211 1 22 22333344432 23579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... . +.++. +.++|+++|.++.-.
T Consensus 218 D~vid~~g------~-------~~~~~-~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 218 DLVYDTLG------G-------PVLDA-SFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEEEESSC------T-------HHHHH-HHHHEEEEEEEEESC
T ss_pred eEEEECCC------c-------HHHHH-HHHHHhcCCeEEEEc
Confidence 98885431 1 34555 568999999988653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.52 Score=43.63 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (297)
.+++|+++|+|.=+ .+..+++..+ .+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG-AVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 57899999997433 3445555555 479999999988777776
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.79 Score=37.17 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcc--CCCc
Q 022451 103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR--KESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~~--~~~y 176 (297)
..+|+++|+|. |. +++.+.+.. ..+|+++|.|++.++.+++. .+.++.+|+. +.+... -+.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~~-----------g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRSE-----------GRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHHT-----------TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHHC-----------CCCEEEcCCCCHHHHHhccCCCCC
Confidence 46899999873 22 334444430 24799999999888776642 2345666653 334433 4579
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|++..+++. ........ .+.+.|++.++...
T Consensus 107 d~vi~~~~~~~--------~~~~~~~~--~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 107 KLVLLAMPHHQ--------GNQTALEQ--LQRRNYKGQIAAIA 139 (183)
T ss_dssp CEEEECCSSHH--------HHHHHHHH--HHHTTCCSEEEEEE
T ss_pred CEEEEeCCChH--------HHHHHHHH--HHHHCCCCEEEEEE
Confidence 99998654311 11223333 35677788777654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.19 Score=45.17 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-g~~------~~~d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVSTEEKAETARKL-GCH------HTINYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHHTTCCE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCC------EEEECCCHHHHHHHHHHhCCCCC
Confidence 45789999994 56667777776654 5899999999888888763 211 0000011233333322 13469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+..... +.++. +.++|+++|.++.-.
T Consensus 216 d~vi~~~g~-------------~~~~~-~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 216 DVVYDSIGK-------------DTLQK-SLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEEECSCT-------------TTHHH-HHHTEEEEEEEEECC
T ss_pred eEEEECCcH-------------HHHHH-HHHhhccCCEEEEEe
Confidence 999865421 12445 568899999987653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.24 Score=42.68 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEEC--CHHHHHHHHhhhhhccCCCCCCCeEEEEcch
Q 022451 90 ESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDI--DEEVVEFCKSYLVVNKEAFSDPRLELVINDA 165 (297)
Q Consensus 90 e~l~~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEi--d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da 165 (297)
|.|..+|++..-..++||++|+|.=+.. +.+++. ..+|++|+. ++++.+++.+ .+++++..+.
T Consensus 18 ~~~~~~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~l~~~-----------~~i~~i~~~~ 84 (223)
T 3dfz_A 18 EGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTVSAEINEWEAK-----------GQLRVKRKKV 84 (223)
T ss_dssp ----CCEEEECCTTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSCCHHHHHHHHT-----------TSCEEECSCC
T ss_pred cccCccccEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHc-----------CCcEEEECCC
Confidence 5566678777778999999999854443 344443 467888854 4444444432 3466654432
Q ss_pred HHHHhccCCCceEEEEcCCC
Q 022451 166 RAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~ 185 (297)
. ...-..+|+||....+
T Consensus 85 ~---~~dL~~adLVIaAT~d 101 (223)
T 3dfz_A 85 G---EEDLLNVFFIVVATND 101 (223)
T ss_dssp C---GGGSSSCSEEEECCCC
T ss_pred C---HhHhCCCCEEEECCCC
Confidence 1 1222468999976543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.16 Score=45.58 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCCeEEEEc--cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE--EcchHHHHhc--cCC
Q 022451 101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV--INDARAELES--RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~--~~Da~~~l~~--~~~ 174 (297)
...++||+.| +|.|..+.++++..+ .+|++++.+++-.+.+++. +.. ..+- ..|..+.+.. ...
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKA-GAW--------QVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHH-TCS--------EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC--------EEEECCCccHHHHHHHHhCCC
Confidence 4578999999 345556666666544 5899999999988888763 211 1111 1233333322 134
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+|+.... . +.++. +.+.|+++|.++.-.
T Consensus 209 ~~D~vi~~~g------~-------~~~~~-~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 209 KVRVVYDSVG------R-------DTWER-SLDCLQRRGLMVSFG 239 (327)
T ss_dssp CEEEEEECSC------G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred CceEEEECCc------h-------HHHHH-HHHHhcCCCEEEEEe
Confidence 6999986642 1 23455 578999999987654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.17 Score=46.10 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=60.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....+|
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~l-Ga~------~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGSTGKCEACERL-GAK------RGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHHSSCEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CCC------EEEeCCchHHHHHHHHHhCCCce
Confidence 45789999953 45666777777654 5899999999999988874 211 0011111233333322 245799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... +.++. +.+.|+++|.++.-.
T Consensus 238 vvid~~g~-------------~~~~~-~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 238 IILDMIGA-------------AYFER-NIASLAKDGCLSIIA 265 (353)
T ss_dssp EEEESCCG-------------GGHHH-HHHTEEEEEEEEECC
T ss_pred EEEECCCH-------------HHHHH-HHHHhccCCEEEEEE
Confidence 98865421 12444 567899999987653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.17 Score=45.75 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
.+.++||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. . ...+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~~~~~~~~~~~-ga~------~~~d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGSEDKLRRAKAL-GAD------ETVNYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCS------EEEETTSTTHHHHHHHHTTTTCE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhc-CCC------EEEcCCcccHHHHHHHHhCCCCc
Confidence 45789999997 56677777777654 5899999999998888763 211 0001001233333332 2 2479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+.... + +.++. +.+.|+++|.++.-.
T Consensus 237 d~vi~~~g-~------------~~~~~-~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 237 DKVVDHTG-A------------LYFEG-VIKATANGGRIAIAG 265 (343)
T ss_dssp EEEEESSC-S------------SSHHH-HHHHEEEEEEEEESS
T ss_pred eEEEECCC-H------------HHHHH-HHHhhccCCEEEEEe
Confidence 99986643 1 12344 567889999887653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.38 Score=43.48 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=49.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
..++.-|||--||+|+++.++.+. ..+.+++|++|..++++++++.... .....+.+|+++..
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~-----~~~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNN-----ISEEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSC-----SCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhcc-----cchHHHHHHHHHHH
Confidence 356778999999999999999986 4789999999999999999875432 23555667766654
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=5.9 Score=42.56 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=91.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---------
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--------- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--------- 171 (297)
..-++++|-+|.|++..-+.+. +. ..+.++|+|+...+.-+.++ |...++.+|...++..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~---------p~~~~~~~DI~~l~~~~~~gdi~~~ 919 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNN---------PGTTVFTEDCNVLLKLVMAGEVTNS 919 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHC---------TTSEEECSCHHHHHHHHTTTCSBCS
T ss_pred CCceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC---------CCCcEeeccHHHHhHhhhccchhhh
Confidence 3457999999999998877664 33 46789999999999888765 3456778888766421
Q ss_pred ------cCCCceEEEEcCC-CCCCC-CCc---------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHH
Q 022451 172 ------RKESYDVIIGDLA-DPIEG-GPC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI 234 (297)
Q Consensus 172 ------~~~~yD~Ii~D~~-~~~~~-~p~---------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i 234 (297)
.....|+|+..++ .+++. +.. ..| -.+|++. + +.++|.-+++=|+..-..+.....+..+
T Consensus 920 ~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L-~~~~lri-v-~~~rPk~fv~ENV~glls~~~g~~~~~i 996 (1330)
T 3av4_A 920 LGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSL-VVSFLSY-C-DYYRPRFFLLENVRNFVSYRRSMVLKLT 996 (1330)
T ss_dssp SCCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSH-HHHHHHH-H-HHHCCSEEEEEEEGGGGTTTTTHHHHHH
T ss_pred hhhhccccCccceEEecCCCcccccccccccccccchhhHH-HHHHHHH-H-HHhcCcEEEEeccHHHhccCccHHHHHH
Confidence 0135899998887 23321 110 012 2346665 3 5789987776664211011233466777
Q ss_pred HHHHHhhCCceeEEEEecCccC---Cc-eeEEEEecC
Q 022451 235 YNTLRQVFKYVVPYSAHIPSFA---DT-WGWIMVSIY 267 (297)
Q Consensus 235 ~~~l~~~F~~v~~~~~~vp~~~---~~-~~~~~as~~ 267 (297)
+..|.+..=.+.........|| .+ ..|+++.+.
T Consensus 997 l~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~ 1033 (1330)
T 3av4_A 997 LRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAP 1033 (1330)
T ss_dssp HHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEECT
T ss_pred HHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEecC
Confidence 7777765333333322323343 22 346666654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.61 Score=43.56 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 022451 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (297)
.+++|+++|+|.-+ .+..+++..+ .+|+++|.++...+.+++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~V~v~D~~~~~~~~~~~l 214 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM 214 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCGGGHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHc
Confidence 47899999997433 3445555455 4899999999988877653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.98 E-value=1.4 Score=34.63 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=56.7
Q ss_pred CCeEEEEccchhH--HHHHHHhcCCCcEEEEEECC-HHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-cCCCc
Q 022451 103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID-EEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid-~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~-~~~~y 176 (297)
.++|+++|+|.=+ ++..|.+. ..+|+++|.+ ++..+..++.+ ...+.++.+|+. +.+.. .-+..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~~~~--------~~~~~~i~gd~~~~~~l~~a~i~~a 72 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHHHhh--------cCCCeEEEcCCCCHHHHHHcChhhC
Confidence 4689999975222 23444443 3579999998 45444333322 134788899875 33443 24679
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+|++...+.. .-..... ..+.+.|...++....
T Consensus 73 d~vi~~~~~d~---------~n~~~~~-~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 73 RAILALSDNDA---------DNAFVVL-SAKDMSSDVKTVLAVS 106 (153)
T ss_dssp SEEEECSSCHH---------HHHHHHH-HHHHHTSSSCEEEECS
T ss_pred CEEEEecCChH---------HHHHHHH-HHHHHCCCCEEEEEEC
Confidence 99998764311 1122223 3466777777776643
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.98 E-value=1.6 Score=36.46 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=56.0
Q ss_pred eEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-cCCCceEE
Q 022451 105 TIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESYDVI 179 (297)
Q Consensus 105 ~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~-~~~~yD~I 179 (297)
+|+++|+|.= .++..+.+. ..+|+++|.|++.++...+. ..+.++.+|+.+ .+.. .-+..|+|
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~~----------~~~~~i~gd~~~~~~l~~a~i~~ad~v 69 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAKK----------LKATIIHGDGSHKEILRDAEVSKNDVV 69 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHH----------SSSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHH----------cCCeEEEcCCCCHHHHHhcCcccCCEE
Confidence 6899998632 234444443 35799999999988765432 235678888754 3433 23679999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...+.. ...+... +.+.+.+...++...
T Consensus 70 i~~~~~d~---------~n~~~~~-~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 70 VILTPRDE---------VNLFIAQ-LVMKDFGVKRVVSLV 99 (218)
T ss_dssp EECCSCHH---------HHHHHHH-HHHHTSCCCEEEECC
T ss_pred EEecCCcH---------HHHHHHH-HHHHHcCCCeEEEEE
Confidence 98764321 1123333 345566666666554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.75 E-value=4.2 Score=38.65 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=61.5
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC-------CCCCeEEEEcchHHHHhccC
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF-------SDPRLELVINDARAELESRK 173 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~-------~~~rv~~~~~Da~~~l~~~~ 173 (297)
.+|.+||+|. +.++..+++..+..+|+++|+|++.++..++.. +.....+ ...+++ ...|..+.+.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~-~t~~~~~~~~--- 85 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLF-FSSDIPKAIA--- 85 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEE-EESCHHHHHH---
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEE-EECCHHHHhh---
Confidence 4899999994 344566666532468999999999988776421 0000000 001232 2334333332
Q ss_pred CCceEEEEcCCCCCCCC-----CccCc-ccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGG-----PCYKL-YTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~-----p~~~L-~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..|+||+..+.|.... ....+ +..+..+. +.+.|++|-+++..
T Consensus 86 -~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~~ 134 (481)
T 2o3j_A 86 -EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRT-IAQYAGGPKIVVEK 134 (481)
T ss_dssp -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHHCCSCEEEEEC
T ss_pred -cCCEEEEecCCccccccccccCCCcHHHHHHHHHH-HHHhCCCCCEEEEC
Confidence 3799999987653110 00122 23456677 67889887766543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.5 Score=32.09 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhccCCCceE
Q 022451 103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~~~~yD~ 178 (297)
.++|+++|+|.- .++..+++. +..+|++++.++.-.+.++. ..+.++..|... .+...-+.+|+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~d~ 72 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDLAALAVLNR-----------MGVATKQVDAKDEAGLAKALGGFDA 72 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHh-----------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence 468999998421 123444443 34689999999987766552 234556555532 23222346999
Q ss_pred EEEcC
Q 022451 179 IIGDL 183 (297)
Q Consensus 179 Ii~D~ 183 (297)
|+...
T Consensus 73 vi~~~ 77 (118)
T 3ic5_A 73 VISAA 77 (118)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.62 E-value=0.29 Score=44.60 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=59.8
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. ....+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-ga~------~~~d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQN-GAH------EVFNHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TCS------EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHc-CCC------EEEeCCCchHHHHHHHHcCCCCc
Confidence 45789999996 45666666776554 5899999999988888764 110 0001111233333322 23479
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+.... . +.++. +.+.|+++|.++.-.
T Consensus 241 D~vi~~~G------~-------~~~~~-~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLA------N-------VNLSK-DLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCH------H-------HHHHH-HHHHEEEEEEEEECC
T ss_pred EEEEECCC------h-------HHHHH-HHHhccCCCEEEEEe
Confidence 99986532 1 23455 568899999987643
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.27 Score=43.80 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=52.6
Q ss_pred CCceEEEEcCCCCCCCCC-c---c--CcccHHHHHHHHcccCCCCcEEEEecCCCCCcCC-chHHHHHHHHHHhhCCcee
Q 022451 174 ESYDVIIGDLADPIEGGP-C---Y--KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQVFKYVV 246 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p-~---~--~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~-~~~~~~i~~~l~~~F~~v~ 246 (297)
++||+|++|...+..... . . .+.+. .... +.++|+|||.+++.. |.. .+..+.+.+.+.+.|..+.
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~L-al~f-A~~vLkPGGtfV~Kv-----yggaDr~se~lv~~LaR~F~~Vr 277 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSM-LTKK-ACLHLNPGGTCVSIG-----YGYADRASESIIGAIARQFKFSR 277 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHH-THHH-HGGGEEEEEEEEEEE-----CCCCSHHHHHHHHHHHTTEEEEE
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHH-HHHH-HHHhcCCCceEEEEE-----ecCCcccHHHHHHHHHHhcceee
Confidence 679999999875543211 0 0 01111 2333 469999999999885 222 2356889999999999887
Q ss_pred EEEEecC--ccCCceeEEEEecCC
Q 022451 247 PYSAHIP--SFADTWGWIMVSIYN 268 (297)
Q Consensus 247 ~~~~~vp--~~~~~~~~~~as~~~ 268 (297)
... | +....-.|+++....
T Consensus 278 ~vK---P~ASR~StEvf~La~gf~ 298 (320)
T 2hwk_A 278 VCK---PKSSLEETEVLFVFIGYD 298 (320)
T ss_dssp EEC---CTTCCSTTCEEEEEEEEC
T ss_pred eeC---CCCccccceEEEEEEeec
Confidence 553 3 222334566666433
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.79 Score=41.90 Aligned_cols=97 Identities=15% Similarity=0.271 Sum_probs=57.6
Q ss_pred CCCCeEEEEc--cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.++++||++| +|.|..+.++++..+ .+|++++ +++-.+.+++. +.. .-+.....|..+.+... ..+|+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga~------~v~~~~~~~~~~~~~~~-~g~D~ 251 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVC-SQDASELVRKL-GAD------DVIDYKSGSVEEQLKSL-KPFDF 251 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TCS------EEEETTSSCHHHHHHTS-CCBSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEe-ChHHHHHHHHc-CCC------EEEECCchHHHHHHhhc-CCCCE
Confidence 4568999999 345667777777664 5898888 66667777653 211 00111112333334332 46999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+-.... +. ..++. ..++|+++|.++.-.
T Consensus 252 vid~~g~-----~~------~~~~~-~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 252 ILDNVGG-----ST------ETWAP-DFLKKWSGATYVTLV 280 (375)
T ss_dssp EEESSCT-----TH------HHHGG-GGBCSSSCCEEEESC
T ss_pred EEECCCC-----hh------hhhHH-HHHhhcCCcEEEEeC
Confidence 9855421 10 12344 568999999997643
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.45 E-value=2 Score=40.67 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=63.4
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----------hccCCCCCCCeEEEEcchHHHH
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----------VNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-----------~~~~~~~~~rv~~~~~Da~~~l 169 (297)
.++|.+||+|. +.++..+++. ..+|+++|++++.++.+++... ...........++ ..|. +.+
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~~ 112 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KEL 112 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HHH
Confidence 35799999995 3455666553 3589999999999887766421 0110001122333 4553 222
Q ss_pred hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
...|+||...+.. .-...+.++. +...++|+.+++.++.
T Consensus 113 ----~~aDlVIeaVpe~-------~~~k~~v~~~-l~~~~~~~~ii~snTs 151 (463)
T 1zcj_A 113 ----STVDLVVEAVFED-------MNLKKKVFAE-LSALCKPGAFLCTNTS 151 (463)
T ss_dssp ----TTCSEEEECCCSC-------HHHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred ----CCCCEEEEcCCCC-------HHHHHHHHHH-HHhhCCCCeEEEeCCC
Confidence 4589999987531 1123467788 7888999998887654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.56 Score=40.72 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=24.2
Q ss_pred CCCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (297)
..++||++|+|+ |. ++..|++ .+..+|+.+|.|.
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDT 65 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred hCCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence 357899999973 33 3444444 3578999999996
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=3.1 Score=42.02 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred CCeEEEEccchhHHHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 103 PKTIFIMGGGEGSTAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
..+|+||-||.|++..=+.+.. ...-+.++|+|+.+++.-+.+++ ...++.+|..++
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---------~~~~~~~di~~i 273 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---------QTEVRNEKADEF 273 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---------TSEEEESCHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---------CCceecCcHHHh
Confidence 3579999999888865544321 12457799999999999888763 345555665443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.11 E-value=2.7 Score=31.71 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-cCCCce
Q 022451 103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESYD 177 (297)
Q Consensus 103 ~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~-~~~~yD 177 (297)
..+|+++|+|.-+ ++..+.+. ..+|+++|.+++.++..++.+ .+.++.+|.. +.+.. .-+.+|
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~----------~~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhc----------CcEEEEcCCCCHHHHHHcCcccCC
Confidence 3579999986422 23444443 358999999998776555321 2345556643 22332 235799
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|++...
T Consensus 72 ~vi~~~~ 78 (140)
T 1lss_A 72 MYIAVTG 78 (140)
T ss_dssp EEEECCS
T ss_pred EEEEeeC
Confidence 9998764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=89.99 E-value=3 Score=39.39 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=78.1
Q ss_pred CCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCC--------CCCCeEEEEcchHHHHh
Q 022451 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF--------SDPRLELVINDARAELE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~--------~~~rv~~~~~Da~~~l~ 170 (297)
..-++-+||+|.=+ ++..+++. .-+|+++|+|++.++..++... .....+ ...++++ ..|..+.+
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~- 82 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV- 82 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH-
T ss_pred CceEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH-
Confidence 34589999998443 34555553 3589999999999887765310 000000 0123332 35544444
Q ss_pred ccCCCceEEEEcCCCCCC--CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 171 SRKESYDVIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+..|+||+..+.|.. .+.+.--+-++.++. +.+.|++|-+++..+..| ....+.+.+.+.+..+.....
T Consensus 83 ---~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~-i~~~l~~g~iVV~~STv~-----pgtt~~l~~~l~e~~~~~d~~ 153 (446)
T 4a7p_A 83 ---KDADAVFIAVGTPSRRGDGHADLSYVFAAARE-IAENLTKPSVIVTKSTVP-----VGTGDEVERIIAEVAPNSGAK 153 (446)
T ss_dssp ---TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHH-HHHSCCSCCEEEECSCCC-----TTHHHHHHHHHHHHSTTSCCE
T ss_pred ---hcCCEEEEEcCCCCccccCCccHHHHHHHHHH-HHHhcCCCCEEEEeCCCC-----chHHHHHHHHHHHhCCCCCce
Confidence 347999998876541 111111123455666 678899887776654322 233445555566555443333
Q ss_pred EEecCcc
Q 022451 249 SAHIPSF 255 (297)
Q Consensus 249 ~~~vp~~ 255 (297)
...-|.+
T Consensus 154 v~~~Pe~ 160 (446)
T 4a7p_A 154 VVSNPEF 160 (446)
T ss_dssp EEECCCC
T ss_pred EEeCccc
Confidence 3566776
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.91 Score=41.49 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=59.6
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.++++||++|+ |.|.++.++++..+ .+|+++- +++-.+.++++ +.. .-+.....|..+.++. .++++|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G-a~Vi~~~-~~~~~~~~~~l-Ga~------~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG-YIPIATC-SPHNFDLAKSR-GAE------EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE-CGGGHHHHHHT-TCS------EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe-CHHHHHHHHHc-CCc------EEEECCCchHHHHHHHHccCCcc
Confidence 56789999998 36778888888765 4777774 88888888874 211 0111112344444443 345699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccC-CCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGvl~~~ 218 (297)
+|+-... . .+.++. +.+.| +++|.++.-
T Consensus 234 ~v~d~~g-----~-------~~~~~~-~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 234 YALDCIT-----N-------VESTTF-CFAAIGRAGGHYVSL 262 (371)
T ss_dssp EEEESSC-----S-------HHHHHH-HHHHSCTTCEEEEES
T ss_pred EEEECCC-----c-------hHHHHH-HHHHhhcCCCEEEEE
Confidence 9885432 1 144555 56778 599998754
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=89.82 E-value=10 Score=33.58 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=66.5
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+|.+||+|. ..++..+++.. ..+|+++|.+ +...+.+++. .++ ...|..+.+. ..|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G-~~~V~~~dr~~~~~~~~~~~~~-----------g~~-~~~~~~e~~~----~aDv 86 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAG-AIDMAAYDAASAESWRPRAEEL-----------GVS-CKASVAEVAG----ECDV 86 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHS-CCEEEEECSSCHHHHHHHHHHT-----------TCE-ECSCHHHHHH----HCSE
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CCeEEEEcCCCCHHHHHHHHHC-----------CCE-EeCCHHHHHh----cCCE
Confidence 46899999983 34566666642 3489999997 5666665542 122 2234444443 3799
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCcee
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (297)
||+-.+.+. ..+.++. +...|+++-+++-.+. ........+.+.+.+.++.+.
T Consensus 87 Vi~~vp~~~---------~~~~~~~-l~~~l~~~~ivvd~st-----~~~~~~~~~~~~~~~~~~g~~ 139 (312)
T 3qsg_A 87 IFSLVTAQA---------ALEVAQQ-AGPHLCEGALYADFTS-----CSPAVKRAIGDVISRHRPSAQ 139 (312)
T ss_dssp EEECSCTTT---------HHHHHHH-HGGGCCTTCEEEECCC-----CCHHHHHHHHHHHHHHCTTCE
T ss_pred EEEecCchh---------HHHHHHh-hHhhcCCCCEEEEcCC-----CCHHHHHHHHHHHHhhcCCCe
Confidence 999876432 1245677 6888988776653322 133444555666666554443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.73 E-value=3 Score=39.51 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCc
Q 022451 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~y 176 (297)
...++|+++|+|.- ..+...+.. ..+|..+|.|++-.+.+.+.+ ++..++++|+.+ .|.+. -+..
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~~--~~~v~iIE~d~~r~~~la~~l---------~~~~Vi~GD~td~~~L~ee~i~~~ 301 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLEQ--TYSVKLIERNLQRAEKLSEEL---------ENTIVFCGDAADQELLTEENIDQV 301 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHC---------TTSEEEESCTTCHHHHHHTTGGGC
T ss_pred ccccEEEEEcchHHHHHHHHHhhh--cCceEEEecCHHHHHHHHHHC---------CCceEEeccccchhhHhhcCchhh
Confidence 45689999998743 323333332 368999999999887766543 568899999964 45543 2679
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+++.-..
T Consensus 302 D~~ia~T~ 309 (461)
T 4g65_A 302 DVFIALTN 309 (461)
T ss_dssp SEEEECCS
T ss_pred cEEEEccc
Confidence 99887654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.66 E-value=1.2 Score=38.82 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=54.9
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC-CceEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVII 180 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~-~yD~Ii 180 (297)
++|.+||+|. +.++..+.+.....+|+++|.+++.++.++++ +.. + . ...|..+.+ . ..|+|+
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~------~--~-~~~~~~~~~----~~~aDvVi 67 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII------D--E-GTTSIAKVE----DFSPDFVM 67 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC------S--E-EESCGGGGG----GTCCSEEE
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CCc------c--c-ccCCHHHHh----cCCCCEEE
Confidence 4799999983 34455555532123799999999988777643 110 1 1 123433333 3 589999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+..+.. ...+.++. +...|+++.+++.
T Consensus 68 lavp~~---------~~~~v~~~-l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 68 LSSPVR---------TFREIAKK-LSYILSEDATVTD 94 (281)
T ss_dssp ECSCHH---------HHHHHHHH-HHHHSCTTCEEEE
T ss_pred EcCCHH---------HHHHHHHH-HHhhCCCCcEEEE
Confidence 986421 13466777 6778888876654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.38 Score=43.74 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=58.8
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
...++||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .-+.....|..+.+.. . ...+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGSQKKLQMAEKL-GAA------AGFNYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCc------EEEecCChHHHHHHHHHhcCCCc
Confidence 45789999984 45666666666554 5899999999988888653 211 0000001233333332 2 2469
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+..... +.++. +.++|+++|.++.-.
T Consensus 233 d~vi~~~G~-------------~~~~~-~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 233 NLILDCIGG-------------SYWEK-NVNCLALDGRWVLYG 261 (354)
T ss_dssp EEEEESSCG-------------GGHHH-HHHHEEEEEEEEECC
T ss_pred eEEEECCCc-------------hHHHH-HHHhccCCCEEEEEe
Confidence 999866421 12344 467889999987654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=0.46 Score=42.51 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+. +..|++ .+..+++.+|-|.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~-aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTR-CGIGKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCc
Confidence 357999999984 443 444554 4689999999886
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=1.3 Score=38.98 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cC-CCCC-------CCeEEEEcchH
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KE-AFSD-------PRLELVINDAR 166 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~-~~~~-------~rv~~~~~Da~ 166 (297)
-++|.+||+|. ..++..+++. ..+|+++|.+++.++.+++.+... .. .+.. .+++. ..|..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~ 80 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA 80 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence 36899999984 3445555554 358999999999988877653110 00 0000 12232 34433
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+.+ +..|+||...+... -...++++. +...++|+.+++.++
T Consensus 81 ~~~----~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~il~s~t 121 (283)
T 4e12_A 81 QAV----KDADLVIEAVPESL-------DLKRDIYTK-LGELAPAKTIFATNS 121 (283)
T ss_dssp HHT----TTCSEEEECCCSCH-------HHHHHHHHH-HHHHSCTTCEEEECC
T ss_pred HHh----ccCCEEEEeccCcH-------HHHHHHHHH-HHhhCCCCcEEEECC
Confidence 332 45899999875321 123467788 788899988887665
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.53 Score=42.61 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.+.++||++|+ |.|.++.++++..+..+|.+++ ++.-.+.++ ++.. .-+. ...|..+.+.. ..+.+|
T Consensus 141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~------~~~~-~~~~~~~~~~~~~~~g~D 210 (349)
T 4a27_A 141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVT------HLFD-RNADYVQEVKRISAEGVD 210 (349)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSS------EEEE-TTSCHHHHHHHHCTTCEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCc------EEEc-CCccHHHHHHHhcCCCce
Confidence 56789999987 3466777787765567888888 454445554 3321 0111 12333344433 345799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... + .++. +.++|+++|.+++-.
T Consensus 211 vv~d~~g~-----~--------~~~~-~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 211 IVLDCLCG-----D--------NTGK-GLSLLKPLGTYILYG 238 (349)
T ss_dssp EEEEECC---------------------CTTEEEEEEEEEEC
T ss_pred EEEECCCc-----h--------hHHH-HHHHhhcCCEEEEEC
Confidence 98855421 1 1234 578999999998653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.37 E-value=1.3 Score=41.44 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=34.3
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (297)
.+.++||++|+ |.|..+.++++..+ .++++++.+++-.+.+++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~~~~~~~~~~~l 264 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRAL 264 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc
Confidence 45789999996 45667777777654 5888899999999988764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.37 E-value=0.68 Score=38.98 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCCeEEEEccchhHH----HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe-EEEEcchHHHHhccCCCc
Q 022451 102 NPKTIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~----~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv-~~~~~Da~~~l~~~~~~y 176 (297)
.+++||+.|+. |.+ ++++++. ..+|++++.++.-.+.... .++ +++.+|..+.+...-+..
T Consensus 20 ~~~~ilVtGat-G~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~~~~~~ 85 (236)
T 3e8x_A 20 QGMRVLVVGAN-GKVARYLLSELKNK--GHEPVAMVRNEEQGPELRE-----------RGASDIVVANLEEDFSHAFASI 85 (236)
T ss_dssp -CCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH-----------TTCSEEEECCTTSCCGGGGTTC
T ss_pred CCCeEEEECCC-ChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHh-----------CCCceEEEcccHHHHHHHHcCC
Confidence 56789999964 444 3444443 4689999999876543322 357 888888763333333578
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+|++.+.
T Consensus 86 D~vi~~ag 93 (236)
T 3e8x_A 86 DAVVFAAG 93 (236)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998876
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.3 Score=42.31 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCC------------CCeEEEEcchHH
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSD------------PRLELVINDARA 167 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-~~~~~~------------~rv~~~~~Da~~ 167 (297)
.++|.+||+|. ++++..+++. ..+|+++|++++.++.+++.+... ...... .+++.. .|. +
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 80 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-H 80 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-H
Confidence 46899999984 5566666664 357999999999999887653210 000001 133332 332 1
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+ +..|+||...+.. .-...+.|+. +.+.++|+.+++.|+.
T Consensus 81 ~~----~~aDlVIeAVpe~-------~~vk~~v~~~-l~~~~~~~~IlasntS 121 (483)
T 3mog_A 81 AL----AAADLVIEAASER-------LEVKKALFAQ-LAEVCPPQTLLTTNTS 121 (483)
T ss_dssp GG----GGCSEEEECCCCC-------HHHHHHHHHH-HHHHSCTTCEEEECCS
T ss_pred Hh----cCCCEEEEcCCCc-------HHHHHHHHHH-HHHhhccCcEEEecCC
Confidence 12 3579999887531 1123477888 7889999999988764
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=89.23 E-value=1.3 Score=38.50 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=24.4
Q ss_pred CCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |......+...+..+++.+|-|.
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 357999999984 44333333345688999999873
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.10 E-value=5.7 Score=36.29 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=66.9
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+|.+||+|. ..++..+++. ..+|+++|.+++.++.+.+. .+. ...|..+.+... ++.|+|+
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-----------g~~-~~~s~~e~~~~a-~~~DvVi 86 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-----------GIA-GARSIEEFCAKL-VKPRVVW 86 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-----------TCB-CCSSHHHHHHHS-CSSCEEE
T ss_pred CCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-----------CCE-EeCCHHHHHhcC-CCCCEEE
Confidence 46899999983 3455666664 35899999999887766542 111 134555666543 4579999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
+-.+.+ ...+.++. +...|++|-+++-.... ......++.+.+.+
T Consensus 87 ~~vp~~---------~v~~vl~~-l~~~l~~g~iiId~st~-----~~~~~~~~~~~l~~ 131 (358)
T 4e21_A 87 LMVPAA---------VVDSMLQR-MTPLLAANDIVIDGGNS-----HYQDDIRRADQMRA 131 (358)
T ss_dssp ECSCGG---------GHHHHHHH-HGGGCCTTCEEEECSSC-----CHHHHHHHHHHHHT
T ss_pred EeCCHH---------HHHHHHHH-HHhhCCCCCEEEeCCCC-----ChHHHHHHHHHHHH
Confidence 987532 34567777 78889887766533221 22333445555554
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.66 E-value=2.2 Score=37.85 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCCeEEEEc--cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhccCCCc
Q 022451 100 HPNPKTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~-~l~~~~~~y 176 (297)
..+..+||++| +|.|..+.++++..+ .+|+++..++ -.+.+++. +.. .++..+-.+ +.. .-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~~~~-~~~~~~~l-Ga~---------~~i~~~~~~~~~~-~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTASKR-NHAFLKAL-GAE---------QCINYHEEDFLLA-ISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEECHH-HHHHHHHH-TCS---------EEEETTTSCHHHH-CCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeccc-hHHHHHHc-CCC---------EEEeCCCcchhhh-hccCC
Confidence 35678999997 345677788888765 4788887544 47777763 211 112111111 222 22569
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-... . +.++. +.++|+++|.++.-
T Consensus 217 D~v~d~~g-----~--------~~~~~-~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVG-----G--------DVGIQ-SIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSC-----H--------HHHHH-HGGGEEEEEEEEEC
T ss_pred CEEEECCC-----c--------HHHHH-HHHhccCCCEEEEe
Confidence 98885431 1 22355 67999999999865
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.51 Score=42.07 Aligned_cols=90 Identities=24% Similarity=0.289 Sum_probs=57.5
Q ss_pred eEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEE
Q 022451 105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~ 181 (297)
+||++|+ |.|..+.++++..+. +|++++.+++-.+.+++. +.. .++..+-...++. ....+|+|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga~---------~vi~~~~~~~~~~~~~~~~d~v~- 216 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL-GAN---------RILSRDEFAESRPLEKQLWAGAI- 216 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH-TCS---------EEEEGGGSSCCCSSCCCCEEEEE-
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-CCC---------EEEecCCHHHHHhhcCCCccEEE-
Confidence 5999986 567788888887654 899999999999999874 211 1111110011211 235799876
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|.. + .+.++. +.++|+++|.++.-.
T Consensus 217 d~~-----g-------~~~~~~-~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 217 DTV-----G-------DKVLAK-VLAQMNYGGCVAACG 241 (324)
T ss_dssp ESS-----C-------HHHHHH-HHHTEEEEEEEEECC
T ss_pred ECC-----C-------cHHHHH-HHHHHhcCCEEEEEe
Confidence 332 1 135666 678999999997653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.56 E-value=0.7 Score=41.74 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=40.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCH---HHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE---EVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~---~vi~~a~~~f~ 147 (297)
..++.-|||--||+|+++.++.+. ..+.+++|++| ..++++++++.
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 356788999999999999999987 47899999999 99999998875
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=88.51 E-value=1.9 Score=39.24 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
+..++|.+||+| ++.+++.+.+. ..+|+++|.+++.++.+++. + +. ...|..+.+....+..|+
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-G----------~~-~~~~~~e~~~~a~~~aDl 71 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-G----------FD-VSADLEATLQRAAAEDAL 71 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-T----------CC-EESCHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-C----------Ce-eeCCHHHHHHhcccCCCE
Confidence 445789999998 45566766664 35799999999988877653 1 11 234555555432234799
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++..+. . ...+.++. +... +|+. +++..
T Consensus 72 VilavP~--------~-~~~~vl~~-l~~~-~~~~-iv~Dv 100 (341)
T 3ktd_A 72 IVLAVPM--------T-AIDSLLDA-VHTH-APNN-GFTDV 100 (341)
T ss_dssp EEECSCH--------H-HHHHHHHH-HHHH-CTTC-CEEEC
T ss_pred EEEeCCH--------H-HHHHHHHH-HHcc-CCCC-EEEEc
Confidence 9998652 1 13466676 5554 6664 45554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=1.1 Score=35.41 Aligned_cols=98 Identities=22% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcc-CCC
Q 022451 101 PNPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~~-~~~ 175 (297)
....+|+++|+|. |.. +..+.+. ..+|+++|.+++.++.+++ ...+.++.+|.. +.+... -..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~----------~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS----------EFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT----------TCCSEEEESCTTSHHHHHTTTGGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh----------cCCCcEEEecCCCHHHHHHcCccc
Confidence 4568999999874 322 3444333 3589999999876543331 123445666642 234332 246
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|+|+....++. ....... +.+.+.+...++....
T Consensus 85 ad~Vi~~~~~~~---------~~~~~~~-~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 85 ADMVFAFTNDDS---------TNFFISM-NARYMFNVENVIARVY 119 (155)
T ss_dssp CSEEEECSSCHH---------HHHHHHH-HHHHTSCCSEEEEECS
T ss_pred CCEEEEEeCCcH---------HHHHHHH-HHHHHCCCCeEEEEEC
Confidence 999998764311 1122222 2345566666666543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=6.8 Score=33.35 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=49.7
Q ss_pred CCCCeEEEEccchh-----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HH
Q 022451 101 PNPKTIFIMGGGEG-----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------EL 169 (297)
Q Consensus 101 ~~~~~VL~iG~G~G-----~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l 169 (297)
...+.||+.|++++ .+++.+++. ..+|.+++.++...+.+++..... ...++.++..|..+ ++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTL----DRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTS----SSCCCEEEECCCSSSHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhc----CCCCceEEeCCCCCHHHHHHHH
Confidence 35688999997632 245666664 468999999876666555543322 22478888888632 22
Q ss_pred hc---cCCCceEEEEcCC
Q 022451 170 ES---RKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~---~~~~yD~Ii~D~~ 184 (297)
+. .-.+.|+++..+.
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIA 96 (266)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCeeEEEEccc
Confidence 21 2247899999875
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=8.6 Score=33.48 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=47.0
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHH-HHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEE-VVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~-vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++. ..+.+.+..... ..++.++..|..+. +.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~ 118 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKE-----GVKCVLLPGDLSDEQHCKDIVQE 118 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTT-----TCCEEEEESCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence 46789999976542 34555554 468999998865 333333333221 35788888887432 21
Q ss_pred --ccCCCceEEEEcCC
Q 022451 171 --SRKESYDVIIGDLA 184 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~ 184 (297)
..-++.|+++..+.
T Consensus 119 ~~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 119 TVRQLGSLNILVNNVA 134 (291)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 12257899999865
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=7.6 Score=34.62 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=57.9
Q ss_pred CCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.+|.+||+|. +.++..++......+|..+|++++..+. +....... .+....+++..+|. +-+ +..|+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~~-~al----~~aDv 77 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK--VFAPKPVDIWHGDY-DDC----RDADL 77 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT--TSSSSCCEEEECCG-GGT----TTCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHh--hhcCCCeEEEcCcH-HHh----CCCCE
Confidence 457899999973 2344444443334689999999985553 22221111 11123556665442 222 45899
Q ss_pred EEEcCCCCCCCCC-ccCcc------cHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGP-CYKLY------TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~------t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++-...+...+. ...+. -.++.+. +.+. .|++++++-+
T Consensus 78 Viia~~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~a~~iv~t 123 (316)
T 1ldn_A 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VMAS-GFQGLFLVAT 123 (316)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HHHH-TCCSEEEECS
T ss_pred EEEcCCCCCCCCCCHHHHHHcChHHHHHHHHH-HHHH-CCCCEEEEeC
Confidence 9998764432111 01111 1234444 3444 5999876643
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=88.20 E-value=2.1 Score=36.57 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=54.1
Q ss_pred CeEEEEccch--hHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+|.+||+|. +.++..+++.. +..+|+++|.+++-.+.+++.++ ++ ...|..+.+. ..|+|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g----------~~-~~~~~~e~~~----~aDvV 67 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYG----------LT-TTTDNNEVAK----NADIL 67 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHC----------CE-ECSCHHHHHH----HCSEE
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhC----------CE-EeCChHHHHH----hCCEE
Confidence 4799999983 34566666541 22489999999988776654332 12 2344445443 37999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
++-.+. . ...+.++. +...|+++.+++.
T Consensus 68 ilav~~-~--------~~~~v~~~-l~~~l~~~~~vvs 95 (247)
T 3gt0_A 68 ILSIKP-D--------LYASIINE-IKEIIKNDAIIVT 95 (247)
T ss_dssp EECSCT-T--------THHHHC----CCSSCTTCEEEE
T ss_pred EEEeCH-H--------HHHHHHHH-HHhhcCCCCEEEE
Confidence 998742 1 12355666 6788888876653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.12 E-value=2.3 Score=37.82 Aligned_cols=97 Identities=14% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..-++|.+||+| ++.++..++ . .-+|+++|.+++.++.+++.+ .... -.++++. .|..+ + ...|+
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~l--~~~~--~~~i~~~-~~~~~-~----~~aDl 76 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQI--PEEL--LSKIEFT-TTLEK-V----KDCDI 76 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHS--CGGG--GGGEEEE-SSCTT-G----GGCSE
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHHH--HHHH--hCCeEEe-CCHHH-H----cCCCE
Confidence 345899999999 455677777 4 358999999999999887762 1000 0134422 33322 2 34799
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
||...++.. -....+|.. +... |+.+++.|+.
T Consensus 77 Vieavpe~~-------~vk~~l~~~-l~~~--~~~IlasntS 108 (293)
T 1zej_A 77 VMEAVFEDL-------NTKVEVLRE-VERL--TNAPLCSNTS 108 (293)
T ss_dssp EEECCCSCH-------HHHHHHHHH-HHTT--CCSCEEECCS
T ss_pred EEEcCcCCH-------HHHHHHHHH-HhcC--CCCEEEEECC
Confidence 999876421 123467777 5555 8888888863
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=0.075 Score=60.66 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred eEEEEccchhHHHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--------
Q 022451 105 TIFIMGGGEGSTAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-------- 171 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-------- 171 (297)
+||+||.|+|..+..+++... ..+.+..|+++...+.|++.|.... +..
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d------------------i~~~~~d~~~~ 1304 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH------------------VTQGQWDPANP 1304 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT------------------EEEECCCSSCC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc------------------ccccccccccc
Q ss_pred ---cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 172 ---~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
....||+|+..-.-+...... +.++. +++.|+|||.+++
T Consensus 1305 ~~~~~~~ydlvia~~vl~~t~~~~------~~l~~-~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1305 APGSLGKADLLVCNCALATLGDPA------VAVGN-MAATLKEGGFLLL 1346 (2512)
T ss_dssp CC-----CCEEEEECC---------------------------CCEEEE
T ss_pred ccCCCCceeEEEEcccccccccHH------HHHHH-HHHhcCCCcEEEE
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=87.85 E-value=7.8 Score=34.92 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCCCeEEEEccch-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHH----hhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 101 PNPKTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCK----SYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~----~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
..+.+|.+||+|. | .++..++...-..+|..+|++++.++... .-++.. ..++++..+|.. -+ +
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-----~~~v~i~~~~~~-a~----~ 72 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-----PQPVKTSYGTYE-DC----K 72 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-----SSCCEEEEECGG-GG----T
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-----cCCeEEEeCcHH-Hh----C
Confidence 3467899999863 2 23344444332358999999998665421 112221 134666666632 22 4
Q ss_pred CceEEEEcCCCCCCCCC-ccCcc--c----HHHHHHHHcccCCCCcEEEEecC
Q 022451 175 SYDVIIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p-~~~L~--t----~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..|+|++-...|...+. ...|+ + ++..+. +. ...|++++++-++
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~-I~-~~~p~a~vlvvtN 123 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSE-VM-ASGFDGIFLVATN 123 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHH-HH-HTTCCSEEEECSS
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHH-HH-HhcCCeEEEEcCC
Confidence 58999997654431111 11122 1 122233 22 3579998776543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=7.7 Score=36.86 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC--------CCCCeEEEEcchHHHHh
Q 022451 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAELE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~~--------~~~rv~~~~~Da~~~l~ 170 (297)
..-+|.+||+|. +.++..+++. ..+|+++|+|++.++..++.- +.....+ ...++++ ..|..+.+.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~~ 83 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAVA 83 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHhh
Confidence 456899999994 3345555553 357999999999998877642 1100000 0123332 344433332
Q ss_pred ccCCCceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 171 SRKESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..|+||+..+.|... +.+..-+..+.++. +.+.|+++-+++..
T Consensus 84 ----~aDvviiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~~~iVV~~ 127 (478)
T 2y0c_A 84 ----HGDVQFIAVGTPPDEDGSADLQYVLAAARN-IGRYMTGFKVIVDK 127 (478)
T ss_dssp ----HCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEEC
T ss_pred ----cCCEEEEEeCCCcccCCCccHHHHHHHHHH-HHHhcCCCCEEEEe
Confidence 479999998765321 11122344566777 67889987766544
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=87.55 E-value=5.5 Score=30.71 Aligned_cols=67 Identities=25% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCeEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHHhccCCCce
Q 022451 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELESRKESYD 177 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~-~~~Da~~~l~~~~~~yD 177 (297)
.+++|++||+| .++..+++. .+ .+|++++.+++-.+...+.++ ..+ ...|..+.+. .+|
T Consensus 20 ~~~~v~iiG~G--~iG~~~a~~l~~~g-~~v~v~~r~~~~~~~~a~~~~----------~~~~~~~~~~~~~~----~~D 82 (144)
T 3oj0_A 20 GGNKILLVGNG--MLASEIAPYFSYPQ-YKVTVAGRNIDHVRAFAEKYE----------YEYVLINDIDSLIK----NND 82 (144)
T ss_dssp CCCEEEEECCS--HHHHHHGGGCCTTT-CEEEEEESCHHHHHHHHHHHT----------CEEEECSCHHHHHH----TCS
T ss_pred cCCEEEEECCC--HHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHHHhC----------CceEeecCHHHHhc----CCC
Confidence 37899999985 444444432 33 459999999887654333222 122 2344444443 489
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
+|+.-.+.
T Consensus 83 ivi~at~~ 90 (144)
T 3oj0_A 83 VIITATSS 90 (144)
T ss_dssp EEEECSCC
T ss_pred EEEEeCCC
Confidence 99987654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=87.55 E-value=2.9 Score=34.41 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=42.8
Q ss_pred eEEEEccchhHHH----HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+||+.|+ +|.++ ++|++. ..+|+++..++.-.... ..++++++.+|..+.-...-+..|+||
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~d~vi 67 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRR--GHEVLAVVRDPQKAADR-----------LGATVATLVKEPLVLTEADLDSVDAVV 67 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHH-----------TCTTSEEEECCGGGCCHHHHTTCSEEE
T ss_pred EEEEEcC-CCHHHHHHHHHHHHC--CCEEEEEEecccccccc-----------cCCCceEEecccccccHhhcccCCEEE
Confidence 5899985 34444 444443 46899999988654321 125788999997543111124689999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
+.+..
T Consensus 68 ~~ag~ 72 (224)
T 3h2s_A 68 DALSV 72 (224)
T ss_dssp ECCCC
T ss_pred ECCcc
Confidence 88764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.38 E-value=12 Score=35.22 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=61.2
Q ss_pred CeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCC--------CCCCeEEEEcchHHHHhcc
Q 022451 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF--------SDPRLELVINDARAELESR 172 (297)
Q Consensus 104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~--------~~~rv~~~~~Da~~~l~~~ 172 (297)
.+|.+||+|.= .++..+++. ..+|+++|+|++.++..++... .....+ ...++++ ..|..+.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~--- 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV--- 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence 47999999843 344555554 3589999999999887766311 000000 0123442 34544444
Q ss_pred CCCceEEEEcCCCCCCC-CCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+..|+||+..+.|... +.+..-+-.+.++. +.+.|+++-+++..+
T Consensus 77 -~~aDvViiaVptp~~~~~~~dl~~v~~v~~~-i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 77 -PEADIIFIAVGTPAGEDGSADMSYVLDAARS-IGRAMSRYILIVTKS 122 (450)
T ss_dssp -GGCSEEEECCCCCBCTTSSBCCHHHHHHHHH-HHHHCCSCEEEEECS
T ss_pred -hcCCEEEEEcCCCcccCCCcChHHHHHHHHH-HHhhCCCCCEEEEee
Confidence 3479999988755311 11111133456666 677888876665544
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=87.38 E-value=1.9 Score=37.65 Aligned_cols=89 Identities=25% Similarity=0.198 Sum_probs=55.1
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|.+||+|. +.++..+.+.....+|+++|.+++..+.+++. +.. . ....|..+.+ +..|+|++
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~------~---~~~~~~~~~~----~~aDvVil 72 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIV------D---EATADFKVFA----ALADVIIL 72 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSC------S---EEESCTTTTG----GGCSEEEE
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCc------c---cccCCHHHhh----cCCCEEEE
Confidence 5899999984 34455555543245899999999888766552 110 0 1223322222 35799999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHccc-CCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~-L~pgGvl~ 216 (297)
..+.. . ..+.++. +... |+++.+++
T Consensus 73 avp~~-------~--~~~v~~~-l~~~~l~~~~ivi 98 (290)
T 3b1f_A 73 AVPIK-------K--TIDFIKI-LADLDLKEDVIIT 98 (290)
T ss_dssp CSCHH-------H--HHHHHHH-HHTSCCCTTCEEE
T ss_pred cCCHH-------H--HHHHHHH-HHhcCCCCCCEEE
Confidence 86521 1 2567777 6777 88876655
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.27 E-value=1.5 Score=38.18 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=50.2
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH----------
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------- 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---------- 168 (297)
.++.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+... ...++.++..|..+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNS----NHENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT----TCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEEccCCCcHHHHHHHHHH
Confidence 56788988876542 34555554 468999999988776655544322 235788898887443
Q ss_pred HhccCCCceEEEEcCC
Q 022451 169 LESRKESYDVIIGDLA 184 (297)
Q Consensus 169 l~~~~~~yD~Ii~D~~ 184 (297)
+....++.|++|..+.
T Consensus 85 ~~~~~g~iD~lv~nAg 100 (311)
T 3o26_A 85 IKTHFGKLDILVNNAG 100 (311)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHhCCCCCEEEECCc
Confidence 1112257999999875
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=4.1 Score=36.74 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=64.1
Q ss_pred CCCCeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC--------CCeEEEEcc
Q 022451 101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD--------PRLELVIND 164 (297)
Q Consensus 101 ~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~--------~rv~~~~~D 164 (297)
+...+|.+||+|+= +++..++.. ..+|+.+|++++.++.++++.... ...+.. .+++. ..|
T Consensus 4 p~~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~ 80 (319)
T 3ado_A 4 PAAGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTN 80 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECC
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccc
Confidence 45678999999843 345555554 467999999999988877654311 111110 12222 223
Q ss_pred hHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 165 a~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+.+ +..|+|+=..+. .--..++.|+. +.+.++|+-+|+.|+.
T Consensus 81 l~~a~----~~ad~ViEav~E-------~l~iK~~lf~~-l~~~~~~~aIlaSNTS 124 (319)
T 3ado_A 81 LAEAV----EGVVHIQECVPE-------NLDLKRKIFAQ-LDSIVDDRVVLSSSSS 124 (319)
T ss_dssp HHHHT----TTEEEEEECCCS-------CHHHHHHHHHH-HHTTCCSSSEEEECCS
T ss_pred hHhHh----ccCcEEeecccc-------HHHHHHHHHHH-HHHHhhhcceeehhhh
Confidence 22222 347888855442 11235688999 8999999999999974
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=87.13 E-value=6.8 Score=36.95 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=58.4
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCC----C---CCCCeEEEEcchHHHHhccC
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA----F---SDPRLELVINDARAELESRK 173 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~----~---~~~rv~~~~~Da~~~l~~~~ 173 (297)
.+|.+||+|. +.++..+++..+..+|+++|++++.++..++.- +..... . ...++++ ..|..+.+.
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~~--- 81 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAIK--- 81 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHH---
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHHh---
Confidence 4799999984 334566666432458999999999887654421 000000 0 0012332 344433343
Q ss_pred CCceEEEEcCCCCCCCCC-----ccCc-ccHHHHHHHHcccCCCCcEEEE
Q 022451 174 ESYDVIIGDLADPIEGGP-----CYKL-YTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p-----~~~L-~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
..|+|++..+.|..... ...+ +-.+..+. +.+.|++|.+++.
T Consensus 82 -~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~-i~~~l~~g~iVV~ 129 (467)
T 2q3e_A 82 -EADLVFISVNTPTKTYGMGKGRAADLKYIEACARR-IVQNSNGYKIVTE 129 (467)
T ss_dssp -HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHH-HHHTCCSEEEEEE
T ss_pred -cCCEEEEEcCCchhhccccccCCCcHHHHHHHHHH-HHhhCCCCCEEEE
Confidence 47999998875542110 0011 12355566 5678887665543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=87.13 E-value=4.1 Score=36.53 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=49.1
Q ss_pred hcCCCCCeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC
Q 022451 98 LHHPNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES 175 (297)
Q Consensus 98 ~~~~~~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
+..++.+++++||+|.= ..++.+....+..+|.+++.+ ...++++++-...+ -++... |..+.++ .
T Consensus 116 La~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g-----~~~~~~--~~~eav~----~ 183 (313)
T 3hdj_A 116 LARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCG-----VPARMA--APADIAA----Q 183 (313)
T ss_dssp HSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHT-----SCEEEC--CHHHHHH----H
T ss_pred hccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcC-----CeEEEe--CHHHHHh----h
Confidence 34567899999999842 334555554567899999999 66666665321111 123333 7766664 3
Q ss_pred ceEEEEcCCC
Q 022451 176 YDVIIGDLAD 185 (297)
Q Consensus 176 yD~Ii~D~~~ 185 (297)
.|+|+.-.+.
T Consensus 184 aDIVi~aT~s 193 (313)
T 3hdj_A 184 ADIVVTATRS 193 (313)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEccCC
Confidence 8999988664
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=11 Score=33.59 Aligned_cols=110 Identities=14% Similarity=0.268 Sum_probs=56.4
Q ss_pred CCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.+|.+||+|.-+.+ ..++......+|..+|++++.++. +...-.... +...++++..+| .+-+ +..|+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~--~~~~~~~v~~~~-~~a~----~~aDv 77 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP--YSPTTVRVKAGE-YSDC----HDADL 77 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGG--GSSSCCEEEECC-GGGG----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhh--hcCCCeEEEeCC-HHHh----CCCCE
Confidence 4568999999754432 333333224689999999865543 222111110 111345555544 2223 34899
Q ss_pred EEEcCCCCCCCCCc-cC--cccHHHHHHH---HcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPC-YK--LYTKSFYEFV---VKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~--L~t~ef~~~~---~~~~L~pgGvl~~~~ 219 (297)
|++-...|...+.. .. ..+...++.+ +.+. .|++++++-+
T Consensus 78 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 78 VVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 99887655421110 01 1111233331 2333 8999988754
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.96 E-value=5.5 Score=35.60 Aligned_cols=106 Identities=25% Similarity=0.260 Sum_probs=55.9
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+|.=+ ++..++......+|+.+|++++.++.....+....... ...++...|. +.+ +..|+|++-
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~--~~~~i~~~d~-~~~----~~aDvViia 74 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT--RRANIYAGDY-ADL----KGSDVVIVA 74 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS--CCCEEEECCG-GGG----TTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhc--CCcEEEeCCH-HHh----CCCCEEEEc
Confidence 68999997433 34444443223489999999987765443221100001 2334444452 222 458999998
Q ss_pred CCCCCCCCC-ccCcc------cHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGP-CYKLY------TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p-~~~L~------t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...+...+. ...|. -++.++. +.+. .|++++++-+
T Consensus 75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~~~~~ii~~t 116 (319)
T 1a5z_A 75 AGVPQKPGETRLQLLGRNARVMKEIARN-VSKY-APDSIVIVVT 116 (319)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHH-HHHH-CTTCEEEECS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHhh-CCCeEEEEeC
Confidence 875431110 00111 1355555 4444 5899876643
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=86.89 E-value=4.9 Score=35.32 Aligned_cols=102 Identities=18% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh------ccCCCCC------------CCeEEEE
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD------------PRLELVI 162 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~~------------~rv~~~~ 162 (297)
-++|.+||+|. +.++..+++. ..+|+++|.+++.++.+++.+.. ....+.. .++++ .
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-~ 91 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-S 91 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-E
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-e
Confidence 46899999984 3356666654 35899999999988876553221 0000100 13333 2
Q ss_pred cchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 163 NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 163 ~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.|..+.+ ...|+||...+... . ...++++. +...++|+.+++.++
T Consensus 92 ~~~~~~~----~~aD~Vi~avp~~~------~-~~~~v~~~-l~~~~~~~~iv~s~t 136 (302)
T 1f0y_A 92 TDAASVV----HSTDLVVEAIVENL------K-VKNELFKR-LDKFAAEHTIFASNT 136 (302)
T ss_dssp SCHHHHT----TSCSEEEECCCSCH------H-HHHHHHHH-HTTTSCTTCEEEECC
T ss_pred cCHHHhh----cCCCEEEEcCcCcH------H-HHHHHHHH-HHhhCCCCeEEEECC
Confidence 3433222 45899999875311 1 13467888 788899888877664
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.67 E-value=3.2 Score=35.16 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+.+.+.+... .+++.++..|..+. +.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVAD-----GGTAISVAVDVSDPESAKAMADRT 80 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 56789999976542 45555554 468999999998877665544322 35788888887432 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-++.|+++..+.
T Consensus 81 ~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 81 LAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 11247999999875
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=3.6 Score=36.93 Aligned_cols=76 Identities=29% Similarity=0.391 Sum_probs=49.3
Q ss_pred CCCCeEEEEccchhHHHHH----HHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhccCC
Q 022451 101 PNPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~----l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~~~~ 174 (297)
-..++||+.|+ +|.++.. +++.++..+|++++.++.-....++.+. .++++++.+|.++. +...-+
T Consensus 19 ~~~k~vlVTGa-tG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 19 LDNQTILITGG-TGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN-------DPRMRFFIGDVRDLERLNYALE 90 (344)
T ss_dssp TTTCEEEEETT-TSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC-------CTTEEEEECCTTCHHHHHHHTT
T ss_pred hCCCEEEEECC-CcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHh
Confidence 35688999985 4555444 4443233489999999876554443321 36799999998643 333234
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
..|+||+.+.
T Consensus 91 ~~D~Vih~Aa 100 (344)
T 2gn4_A 91 GVDICIHAAA 100 (344)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEECCC
Confidence 6899999875
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.53 E-value=4 Score=34.39 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~-- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+...+.+... ..++.++..|..+ +++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 76 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEK-----GFKARGLVLNISDIESIQNFFAEI 76 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 46788998876542 45555554 468999999998776655544322 3578888888633 222
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
....+.|+++..+.
T Consensus 77 ~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 77 KAENLAIDILVNNAG 91 (247)
T ss_dssp HHTTCCCSEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 23357899999875
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.33 E-value=3 Score=35.62 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------H
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---------l 169 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+... ..++.++..|..+. +
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAA-----GGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEECcCCCHHHHHHHHHHH
Confidence 56789999977553 44555554 468999999988776665544322 35788888886321 2
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
... .+.|+++..+.
T Consensus 79 ~~~-g~id~lv~nAg 92 (252)
T 3h7a_A 79 DAH-APLEVTIFNVG 92 (252)
T ss_dssp HHH-SCEEEEEECCC
T ss_pred Hhh-CCceEEEECCC
Confidence 223 67999999876
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.23 E-value=6.7 Score=32.88 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch--------HHHHh
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--------RAELE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da--------~~~l~ 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+... ..+++.++..|. ..+++
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSA----GQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT----TSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhc----CCCCceEEEeccccCCHHHHHHHHH
Confidence 46788888875442 34555554 468999999998877666655432 125566776665 12222
Q ss_pred ---ccCCCceEEEEcCC
Q 022451 171 ---SRKESYDVIIGDLA 184 (297)
Q Consensus 171 ---~~~~~yD~Ii~D~~ 184 (297)
..-++.|+++..+.
T Consensus 87 ~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHSCCSEEEECCC
T ss_pred HHHHhCCCCCEEEECCc
Confidence 12247999999875
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.20 E-value=12 Score=31.99 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+.+.+.+... ..++.++..|..+. +.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDT-----GRRALSVGTDITDDAQVAHLVDET 82 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 56889999987653 45566654 468999999988776665544322 35788888886432 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-.+.|+++..+.
T Consensus 83 ~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 83 MKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHTSCCSEEEECCC
T ss_pred HHHcCCCcEEEECCC
Confidence 12357999999874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=86.19 E-value=8.8 Score=32.51 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch--H------HHH-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA--R------AEL- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da--~------~~l- 169 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+.+.+.+.... ..++.++..|. . +.+
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEET----GRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHH----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhc----CCCceEEEEecccCCHHHHHHHHH
Confidence 46789999976542 34555554 4689999999887776655443221 23677777776 1 122
Q ss_pred --hccCCCceEEEEcCC
Q 022451 170 --ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 --~~~~~~yD~Ii~D~~ 184 (297)
...-++.|+++..+.
T Consensus 85 ~~~~~~g~id~lv~nAg 101 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAG 101 (252)
T ss_dssp HHHHHCSCCSEEEECCC
T ss_pred HHHHhCCCCCEEEECCc
Confidence 122357999999875
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=5.4 Score=38.25 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+++|+++|+|. |......++..+ .+|+++|.++.-.+.|++. + +++ .+..+.+ ...|+|
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~G-a~Viv~d~~~~~~~~A~~~-G----------a~~--~~l~e~l----~~aDvV 333 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQG-ARVSVTEIDPINALQAMME-G----------FDV--VTVEEAI----GDADIV 333 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-T----------CEE--CCHHHHG----GGCSEE
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-C----------CEE--ecHHHHH----hCCCEE
Confidence 5688999999873 333344444444 5899999999887777653 1 111 2333333 358999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+..... ..++..+. .+.+++||+++ |.+
T Consensus 334 i~atgt-------~~~i~~~~-----l~~mk~ggilv-nvG 361 (494)
T 3ce6_A 334 VTATGN-------KDIIMLEH-----IKAMKDHAILG-NIG 361 (494)
T ss_dssp EECSSS-------SCSBCHHH-----HHHSCTTCEEE-ECS
T ss_pred EECCCC-------HHHHHHHH-----HHhcCCCcEEE-EeC
Confidence 986421 23444333 34578999875 554
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=85.87 E-value=2.4 Score=34.78 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=41.6
Q ss_pred eEEEEccchhHH----HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 105 TIFIMGGGEGST----AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~G~G~~----~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+||+.|+. |.+ ++.|++. ..+|+++..++.-.+.. . ++++++.+|..+.-...-+..|+||
T Consensus 2 kvlVtGat-G~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-----------~-~~~~~~~~D~~d~~~~~~~~~d~vi 66 (221)
T 3ew7_A 2 KIGIIGAT-GRAGSRILEEAKNR--GHEVTAIVRNAGKITQT-----------H-KDINILQKDIFDLTLSDLSDQNVVV 66 (221)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESCSHHHHHH-----------C-SSSEEEECCGGGCCHHHHTTCSEEE
T ss_pred eEEEEcCC-chhHHHHHHHHHhC--CCEEEEEEcCchhhhhc-----------c-CCCeEEeccccChhhhhhcCCCEEE
Confidence 68999853 444 3444443 36899999987653321 1 4688899987543111124689999
Q ss_pred EcCCC
Q 022451 181 GDLAD 185 (297)
Q Consensus 181 ~D~~~ 185 (297)
+.+..
T Consensus 67 ~~ag~ 71 (221)
T 3ew7_A 67 DAYGI 71 (221)
T ss_dssp ECCCS
T ss_pred ECCcC
Confidence 88764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=85.81 E-value=5.9 Score=37.59 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=52.8
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
-.+++|+++|+|. |......++.. ..+|+++|+||.-...+... .+++ .+..+.+ ...|+|
T Consensus 245 L~GKTVgVIG~G~IGr~vA~~lraf-Ga~Viv~d~dp~~a~~A~~~-----------G~~v--v~LeElL----~~ADIV 306 (464)
T 3n58_A 245 MAGKVAVVCGYGDVGKGSAQSLAGA-GARVKVTEVDPICALQAAMD-----------GFEV--VTLDDAA----STADIV 306 (464)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHT-----------TCEE--CCHHHHG----GGCSEE
T ss_pred ccCCEEEEECcCHHHHHHHHHHHHC-CCEEEEEeCCcchhhHHHhc-----------Ccee--ccHHHHH----hhCCEE
Confidence 4689999999985 33333334434 36899999999754433321 1222 2333334 357998
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+... + ...+++.+.|+. +++|+++ +|++.
T Consensus 307 v~at------g-t~~lI~~e~l~~-----MK~GAIL-INvGR 335 (464)
T 3n58_A 307 VTTT------G-NKDVITIDHMRK-----MKDMCIV-GNIGH 335 (464)
T ss_dssp EECC------S-SSSSBCHHHHHH-----SCTTEEE-EECSS
T ss_pred EECC------C-CccccCHHHHhc-----CCCCeEE-EEcCC
Confidence 8642 1 135667666554 5666655 68753
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.68 E-value=1.2 Score=39.74 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=54.2
Q ss_pred eEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHhc-cCCCceEEE
Q 022451 105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELES-RKESYDVII 180 (297)
Q Consensus 105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da-~~~l~~-~~~~yD~Ii 180 (297)
+||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .+ +-..|. .+.++. ....+|+|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga~-------~~-i~~~~~~~~~~~~~~~~~~d~vi 221 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLRVL-GAK-------EV-LAREDVMAERIRPLDKQRWAAAV 221 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHHHT-TCS-------EE-EECC---------CCSCCEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-CCc-------EE-EecCCcHHHHHHHhcCCcccEEE
Confidence 8999996 56667778887665 5799999998888888763 211 00 101111 111221 234699987
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
-.... + .++. +.+.|+++|.++.-.
T Consensus 222 d~~g~-----~--------~~~~-~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 222 DPVGG-----R--------TLAT-VLSRMRYGGAVAVSG 246 (328)
T ss_dssp ECSTT-----T--------THHH-HHHTEEEEEEEEECS
T ss_pred ECCcH-----H--------HHHH-HHHhhccCCEEEEEe
Confidence 54321 1 1344 567899999997653
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.39 E-value=4.2 Score=35.77 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=51.8
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES 171 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~ 171 (297)
-..+.||+.|+++|. +++.+++. ..+|.+++.++.-++.+.+.+... ..++.++..|..+. ++.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQ-----GFDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHH
Confidence 356889999976552 34555554 468999999998887766655432 25788888886432 211
Q ss_pred ---cCCCceEEEEcCC
Q 022451 172 ---RKESYDVIIGDLA 184 (297)
Q Consensus 172 ---~~~~yD~Ii~D~~ 184 (297)
...+.|++|..+.
T Consensus 102 ~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHSSCSEEEECCC
T ss_pred HHHhCCCCCEEEECCC
Confidence 1247999999876
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.20 E-value=3.8 Score=35.38 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=54.2
Q ss_pred eEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+|. +.++..+.+. + .+|+++|.+++.++.++++ +.. . + ...|.. .. ...|+|++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-g-~~V~~~~~~~~~~~~~~~~-g~~------~--~-~~~~~~----~~-~~~D~vi~a 64 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR-G-HYLIGVSRQQSTCEKAVER-QLV------D--E-AGQDLS----LL-QTAKIIFLC 64 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-CEEEEECSCHHHHHHHHHT-TSC------S--E-EESCGG----GG-TTCSEEEEC
T ss_pred EEEEEcCcHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHhC-CCC------c--c-ccCCHH----Hh-CCCCEEEEE
Confidence 689999984 3345555554 2 4899999999887766542 110 1 1 223422 22 468999998
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+.. ...+.++. +...++++.++ ++.
T Consensus 65 v~~~---------~~~~~~~~-l~~~~~~~~~v-v~~ 90 (279)
T 2f1k_A 65 TPIQ---------LILPTLEK-LIPHLSPTAIV-TDV 90 (279)
T ss_dssp SCHH---------HHHHHHHH-HGGGSCTTCEE-EEC
T ss_pred CCHH---------HHHHHHHH-HHhhCCCCCEE-EEC
Confidence 6521 23467777 67888887765 454
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.14 E-value=4.6 Score=36.07 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=57.7
Q ss_pred CeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--ccCCCC-CCCeEEEEcchHHHHhccCCCceE
Q 022451 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--NKEAFS-DPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~--~~~~~~-~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+|++||+|.- .++..+.+. ..+|++++.+++.++..++.... ...... ..++.....|..+.+ +.+|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~ 78 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV 78 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----hcCCE
Confidence 58999999852 344555543 35799999999887766554221 110000 001112334544433 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
|++..+.. . ..+.++. +...|+++.+++.
T Consensus 79 vi~~v~~~-------~--~~~~~~~-l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 79 ILIVVPAI-------H--HASIAAN-IASYISEGQLIIL 107 (359)
T ss_dssp EEECSCGG-------G--HHHHHHH-HGGGCCTTCEEEE
T ss_pred EEEeCCch-------H--HHHHHHH-HHHhCCCCCEEEE
Confidence 99986532 1 2577788 7888998775543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.14 E-value=9.1 Score=33.54 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCCCeEEEEccchh-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..+++|++||+|.= ......++..+ .+|+++|.++.-.+.++++ + ++.+. .+..+.+ ...|+
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~~-g----------~~~~~~~~l~~~l----~~aDv 216 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG-AKVKVGARESDLLARIAEM-G----------MEPFHISKAAQEL----RDVDV 216 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-T----------SEEEEGGGHHHHT----TTCSE
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHC-C----------CeecChhhHHHHh----cCCCE
Confidence 45789999998732 22222333343 4899999998765544431 1 22221 2322322 46999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+...+. .+...+.+ +.++|++++ +|+.
T Consensus 217 Vi~~~p~--------~~i~~~~l-----~~mk~~~~l-in~a 244 (293)
T 3d4o_A 217 CINTIPA--------LVVTANVL-----AEMPSHTFV-IDLA 244 (293)
T ss_dssp EEECCSS--------CCBCHHHH-----HHSCTTCEE-EECS
T ss_pred EEECCCh--------HHhCHHHH-----HhcCCCCEE-EEec
Confidence 9998642 34444433 356787766 5653
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=84.96 E-value=9 Score=33.92 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=52.2
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+|.-+ ++..++......+|..+|++++.++.....+.... .+. ...++...|. +-+ +..|+|+.-
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~-~~~-~~~~i~~~~~-~a~----~~aDvVIi~ 74 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAA-PVS-HGTRVWHGGH-SEL----ADAQVVILT 74 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSC-CTT-SCCEEEEECG-GGG----TTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhh-hhc-CCeEEEECCH-HHh----CCCCEEEEc
Confidence 68999987433 33444443223489999999986653222121110 111 3344444452 222 357999998
Q ss_pred CCCCCCCCC-ccCcc------cHHHHHHHHcccCCCCcEEEEec
Q 022451 183 LADPIEGGP-CYKLY------TKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 183 ~~~~~~~~p-~~~L~------t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...|...+. ...+. -++.++. +.+. .|++++++-+
T Consensus 75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~~~vi~~t 116 (304)
T 2v6b_A 75 AGANQKPGESRLDLLEKNADIFRELVPQ-ITRA-APDAVLLVTS 116 (304)
T ss_dssp C------------CHHHHHHHHHHHHHH-HHHH-CSSSEEEECS
T ss_pred CCCCCCCCCcHHHHHHhHHHHHHHHHHH-HHHh-CCCeEEEEec
Confidence 753321110 01111 1345555 4554 6999887643
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=14 Score=33.36 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCCCCeEEEEccchh-H-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...+.+|.++|+|.= . ++..++...-..++..+|++++.++--..-+.... .+. .++++..+|-.. + +..|
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-~~~-~~~~i~~~~~~a-~----~~aD 78 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-PFT-SPKKIYSAEYSD-A----KDAD 78 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-GGS-CCCEEEECCGGG-G----TTCS
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-hhc-CCcEEEECcHHH-h----cCCC
Confidence 356789999998632 2 33444443333589999999886653322222110 011 356666665322 2 4589
Q ss_pred EEEEcCCCCCCC-CCccCcc------cHHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEG-GPCYKLY------TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~-~p~~~L~------t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|++-+..|... +....|+ -+++.+. +.+ ..|++++++-++
T Consensus 79 iVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~-i~~-~~p~a~ilvvtN 126 (326)
T 3vku_A 79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDP-IVD-SGFNGIFLVAAN 126 (326)
T ss_dssp EEEECCCCC----------------CHHHHHHH-HHT-TTCCSEEEECSS
T ss_pred EEEECCCCCCCCCchHHHHHHHHHHHHHHHHHH-HHh-cCCceEEEEccC
Confidence 999876544311 1111222 1234444 333 579998876543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=84.76 E-value=6.2 Score=35.29 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=51.5
Q ss_pred CCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+.+|.+||+|.=+. +..++......+|..+|++++.++. +.. +.... .+ ..++++..+| .+-+ +..|+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d-l~~~~-~~-~~~~~i~~~~-~~a~----~~aDv 77 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-INHGL-PF-MGQMSLYAGD-YSDV----KDCDV 77 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-HTTSC-CC-TTCEEEC--C-GGGG----TTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH-HHHhH-Hh-cCCeEEEECC-HHHh----CCCCE
Confidence 456899999864332 3333333334589999999865543 222 11110 11 1355665444 2222 45899
Q ss_pred EEEcCCCCCCCCCc-cC--ccc----HHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPC-YK--LYT----KSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~-~~--L~t----~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++-...|...+.. .. ..+ ++..+. +.+. +|++++++-++
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~-i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQN-IMKY-YNHGVILVVSN 124 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHH-HHHH-CCSCEEEECSS
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHH-HHHh-CCCcEEEEecC
Confidence 99887654311110 01 111 233344 3333 79999887543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.72 E-value=6.3 Score=33.82 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
..++||+.|+++|. +++.+++. ..+|.+++.++.-.+...+.+... ..++.++..|..+. +.
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEEcCHHHHHHHHHHHHhc-----CCeEEEEEeeCCCHHHHHHHHHHH
Confidence 46789999865442 33444443 468999999987666554433321 25788888886432 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-++.|+||..+.
T Consensus 103 ~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 103 KAEIGDVSILVNNAG 117 (272)
T ss_dssp HHHTCCCSEEEECCC
T ss_pred HHHCCCCcEEEECCC
Confidence 12347999999875
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=84.66 E-value=1.8 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=25.0
Q ss_pred CCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (297)
...+||++|+|+ |+. +..|+. .+..+++.||-|.
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~-aGVg~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIA-WGVRKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCB
T ss_pred hCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCE
Confidence 367999999984 333 444444 5789999999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=84.62 E-value=3 Score=39.19 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEE----cch------HH
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVI----NDA------RA 167 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~-~~~~~~rv~~~~----~Da------~~ 167 (297)
.++++||++|+ |.|.++.++++..+ .++++++.+++-.+.+++. +... ....++.+.+.. .|. .+
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~ 304 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVSSPQKAEICRAM-GAEAIIDRNAEGYRFWKDENTQDPKEWKRFGK 304 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH-TCCEEEETTTTTCCSEEETTEECHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEECCHHHHHHHHhh-CCcEEEecCcCcccccccccccchHHHHHHHH
Confidence 45788999986 45667778887664 5888888999999999874 2110 000111110000 111 12
Q ss_pred HHhc--cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 168 ELES--RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 168 ~l~~--~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.+.. ....+|+|+-... .+.++. +.+.|+++|.++.-
T Consensus 305 ~i~~~t~g~g~Dvvid~~G-------------~~~~~~-~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 305 RIRELTGGEDIDIVFEHPG-------------RETFGA-SVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHTSCCEEEEEECSC-------------HHHHHH-HHHHEEEEEEEEES
T ss_pred HHHHHhCCCCCcEEEEcCC-------------chhHHH-HHHHhhCCcEEEEE
Confidence 2222 2357998875321 134566 57899999998764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.57 E-value=3.9 Score=34.90 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-chh--H-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc
Q 022451 102 NPKTIFIMGG-GEG--S-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES 171 (297)
Q Consensus 102 ~~~~VL~iG~-G~G--~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~ 171 (297)
.++.||+.|+ |.| . +++.+++. ..+|.+++.++.-.+.+.+.+... ...++.++..|..+. ++.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADL----GLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT----CSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhc----CCCceEEEEeCCCCHHHHHHHHHH
Confidence 5678999987 433 2 45666664 468999999998777666554322 236889999887432 211
Q ss_pred ---cCCCceEEEEcCC
Q 022451 172 ---RKESYDVIIGDLA 184 (297)
Q Consensus 172 ---~~~~yD~Ii~D~~ 184 (297)
.-.+.|++|..+.
T Consensus 95 ~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAG 110 (266)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHhCCCcEEEECCC
Confidence 2247899999876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.54 E-value=11 Score=34.20 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCeEEEEccchh--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh----hccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLV----VNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~----~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..+|.+||+|.= .++..+++. ..+|++++.+++.++..++.-. +++..+ .+++++ ..|..+.+ +..
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~-t~d~~ea~----~~a 100 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKA-YCDLKASL----EGV 100 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEE-ESCHHHHH----TTC
T ss_pred CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEE-ECCHHHHH----hcC
Confidence 468999999843 344555543 3579999999998877665311 111111 234443 35554444 347
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|++-.+. . ..++.++. ++..|+++-+++..
T Consensus 101 DvVilaVp~--------~-~~~~vl~~-i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 101 TDILIVVPS--------F-AFHEVITR-MKPLIDAKTRIAWG 132 (356)
T ss_dssp CEEEECCCH--------H-HHHHHHHH-HGGGCCTTCEEEEC
T ss_pred CEEEECCCH--------H-HHHHHHHH-HHHhcCCCCEEEEE
Confidence 999987642 1 34577888 78899888766543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=84.49 E-value=3.9 Score=34.15 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=46.5
Q ss_pred CeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhccCC
Q 022451 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESRKE 174 (297)
Q Consensus 104 ~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~~~~ 174 (297)
+.||+.|+++|. +++.+++. ..+|.+++.++.-++.+.+.+ ..++.++..|..+ .+....+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~ 71 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCL--------SNNVGYRARDLASHQEVEQLFEQLDS 71 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTC--------SSCCCEEECCTTCHHHHHHHHHSCSS
T ss_pred CEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH--------hhccCeEeecCCCHHHHHHHHHHHhh
Confidence 468999976542 34555554 367999999998877665543 2456777777632 3344455
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
.+|+++..+.
T Consensus 72 ~~d~lv~~Ag 81 (230)
T 3guy_A 72 IPSTVVHSAG 81 (230)
T ss_dssp CCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 6799998875
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=84.48 E-value=4.9 Score=35.38 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=60.7
Q ss_pred CCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
...+|.+||+|. ..++..+++. ..+|+++|.+++.++.+++. + ......|..+.+ +..|+|
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-g----------~~~~~~~~~e~~----~~aDvv 68 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE-G----------ACGAAASAREFA----GVVDAL 68 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-T----------CSEEESSSTTTT----TTCSEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc-C----------CccccCCHHHHH----hcCCEE
Confidence 346899999983 3345556554 35899999999988776653 1 111233333322 457999
Q ss_pred EEcCCCCCCCCCccCcccHHHH---HHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFY---EFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~---~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++..+++. ..++.+ +. +...|++|.+++ +... ......+.+.+.+.+
T Consensus 69 i~~vp~~~--------~~~~v~~~~~~-l~~~l~~g~ivv-~~st----~~~~~~~~~~~~~~~ 118 (303)
T 3g0o_A 69 VILVVNAA--------QVRQVLFGEDG-VAHLMKPGSAVM-VSST----ISSADAQEIAAALTA 118 (303)
T ss_dssp EECCSSHH--------HHHHHHC--CC-CGGGSCTTCEEE-ECSC----CCHHHHHHHHHHHHT
T ss_pred EEECCCHH--------HHHHHHhChhh-HHhhCCCCCEEE-ecCC----CCHHHHHHHHHHHHH
Confidence 99876421 012222 33 456778777664 5421 123344455555554
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.44 E-value=13 Score=32.22 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
+.|.+|+-|++.|. +++.+++. ..+|..++.+++-++.+.+.+... ..++..+..|..+. ++
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~~~~~~~~~~i~~~-----g~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGM-----GKEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 56788888876653 34555554 478999999998887766655432 25788888886322 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
+.-++.|+++.++-
T Consensus 79 ~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 79 FETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCc
Confidence 12367999999875
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=84.44 E-value=9.1 Score=33.63 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~ 178 (297)
..+++|++||+|.=+ .....++..+ .+|+++|.++.-.+.++++ + ++.+. .+..+. -...|+
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d~~~~~~~~~~~~-g----------~~~~~~~~l~~~----l~~aDv 218 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALG-ANVKVGARSSAHLARITEM-G----------LVPFHTDELKEH----VKDIDI 218 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-T----------CEEEEGGGHHHH----STTCSE
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC-C----------CeEEchhhHHHH----hhCCCE
Confidence 457899999987422 2222233343 5899999998765544331 1 22221 232222 256899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+...+. .+.+.+ ..+.++|++++ +|+
T Consensus 219 Vi~~~p~--------~~i~~~-----~~~~mk~g~~l-in~ 245 (300)
T 2rir_A 219 CINTIPS--------MILNQT-----VLSSMTPKTLI-LDL 245 (300)
T ss_dssp EEECCSS--------CCBCHH-----HHTTSCTTCEE-EEC
T ss_pred EEECCCh--------hhhCHH-----HHHhCCCCCEE-EEE
Confidence 9998753 334433 23568888766 565
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=3.9 Score=34.45 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCCeEEEEccchhHHH----HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 022451 102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~----~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~- 170 (297)
..++||+.|++ |+++ +.+++. ..+|.+++.++.-.+...+.+... .+++.++..|..+. ++
T Consensus 10 ~~~~vlVtGas-ggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 81 (255)
T 1fmc_A 10 DGKCAIITGAG-AGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 45788888864 4444 444443 468999999987665444433321 25688888886432 11
Q ss_pred --ccCCCceEEEEcCC
Q 022451 171 --SRKESYDVIIGDLA 184 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~ 184 (297)
....+.|+||+.+.
T Consensus 82 ~~~~~~~~d~vi~~Ag 97 (255)
T 1fmc_A 82 AISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHhcCCCCEEEECCC
Confidence 11247999999875
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.03 E-value=8.2 Score=32.87 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+...+.+... ..++.++..|..+. +.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~ 100 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAA-----GGEAESHACDLSHSDAIAAFATGV 100 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHH
Confidence 46788988865442 34455543 468999999998877666554432 25788888886322 21
Q ss_pred -ccCCCceEEEEcCCC
Q 022451 171 -SRKESYDVIIGDLAD 185 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~~ 185 (297)
...++.|+++..+..
T Consensus 101 ~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 101 LAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHhcCCCCEEEECCCc
Confidence 122579999998753
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=83.98 E-value=4 Score=36.43 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=55.2
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+|.+||+|. .+++..++......+|..+|++++....+.+.... ..++++.. .|- +-+ +.-|+|+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~-----~~~~i~~t-~d~-~~l----~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIF-----NLPNVEIS-KDL-SAS----AHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHH-----TCTTEEEE-SCG-GGG----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhh-----cCCCeEEe-CCH-HHH----CCCCEEE
Confidence 46899999994 33666666544456899999998643334333221 12466653 563 222 4589999
Q ss_pred EcCCCCCCCCCccCcc------cHHHHHHHHcccCCCCcEEEEecC
Q 022451 181 GDLADPIEGGPCYKLY------TKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~------t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.-.-.+...+....|. -++.++. +.+. .|++++++-++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~-i~~~-~p~a~iiv~sN 126 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPA-LGHY-SQHSVLLVASQ 126 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHH-HHHH-TTTCEEEECSS
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHh-CCCeEEEEcCC
Confidence 8764321000000111 2345555 4444 49999866443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=5.7 Score=34.76 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=48.4
Q ss_pred CCCeEEEEccchh-----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh
Q 022451 102 NPKTIFIMGGGEG-----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G-----~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~ 170 (297)
..+.||+.|+++| .+++.+++. ..+|.+++.++...+.+++..... +++.++..|..+. ++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEEL------GAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHH------TCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc------CCceEEECCCCCHHHHHHHHH
Confidence 5688999997643 245666654 468999999976655555433222 3577888886322 21
Q ss_pred ---ccCCCceEEEEcCC
Q 022451 171 ---SRKESYDVIIGDLA 184 (297)
Q Consensus 171 ---~~~~~yD~Ii~D~~ 184 (297)
..-++.|++|..+.
T Consensus 102 ~~~~~~g~iD~lVnnAG 118 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIG 118 (293)
T ss_dssp HHHHHTSCCSEEEECCC
T ss_pred HHHHhcCCCCEEEECCc
Confidence 12357999999875
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=0.9 Score=41.52 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCH
Q 022451 103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~ 136 (297)
+|+|++||+|.+++. ..|.+..+..+|++||-++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~ 37 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE 37 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence 689999999988764 4466655567999999875
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.54 E-value=14 Score=32.06 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+.+.+.+... ..++.++..|..+. +..
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVGA-----GGQAIALEADVSDELQMRNAVRDL 99 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHTTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 56789999976543 34555554 468999999988776665544322 35788888886432 211
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++..+.
T Consensus 100 ~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 100 VLKFGHLDIVVANAG 114 (283)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 2257999999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=83.44 E-value=5.6 Score=34.62 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=55.1
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCC---CCeEEEEcchHHHHhccCCCce
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSD---PRLELVINDARAELESRKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~~---~rv~~~~~Da~~~l~~~~~~yD 177 (297)
.+|++||+|. +.++..+.+. ..+|++++.+++.++..++. +.... ... .++++. +..+.. ..-+.+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~--~~~~~~-~~~~~~d 76 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKNGLIADF--NGEEVVANLPIF--SPEEID-HQNEQVD 76 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHCEEEEE--TTEEEEECCCEE--CGGGCC-TTSCCCS
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhCCEEEEe--CCCeeEecceee--cchhhc-ccCCCCC
Confidence 3799999983 3345555553 35899999999887766553 11110 000 011111 111110 0012699
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|++..+.. ...+.++. +...|+++.+++..
T Consensus 77 ~vi~~v~~~---------~~~~v~~~-l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 77 LIIALTKAQ---------QLDAMFKA-IQPMITEKTYVLCL 107 (316)
T ss_dssp EEEECSCHH---------HHHHHHHH-HGGGCCTTCEEEEC
T ss_pred EEEEEeccc---------cHHHHHHH-HHHhcCCCCEEEEe
Confidence 999986521 13577787 78889888766544
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=83.35 E-value=2.4 Score=37.36 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCCceEEEEcCCCCCCCCC---cc-CcccHH-HHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeE
Q 022451 173 KESYDVIIGDLADPIEGGP---CY-KLYTKS-FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p---~~-~L~t~e-f~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~ 247 (297)
-.+||+|+++...|.+.-- |+ +-.... .-.. .-++|+|||.+++.... ...+.-+.++..+.+.|..+.+
T Consensus 209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~-al~~L~pGGtlv~~aYG----yADR~SE~vV~alARkF~~~rv 283 (324)
T 3trk_A 209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGD-SLRLLKPGGSLLIRAYG----YADRTSERVICVLGRKFRSSRA 283 (324)
T ss_dssp GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHH-GGGGEEEEEEEEEEECC----CCSHHHHHHHHHHHTTEEEEEE
T ss_pred CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHH-HHhhcCCCceEEEEeec----ccccchHHHHHHHHhhheeeee
Confidence 3789999999876653110 00 000001 1112 35899999999988632 2345567888999999987764
Q ss_pred E
Q 022451 248 Y 248 (297)
Q Consensus 248 ~ 248 (297)
.
T Consensus 284 ~ 284 (324)
T 3trk_A 284 L 284 (324)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=83.32 E-value=1.8 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=24.1
Q ss_pred CCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECC
Q 022451 103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDID 135 (297)
Q Consensus 103 ~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid 135 (297)
..+||++|+|+ |+. +..|++ .+..+|+.||-|
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~-aGVG~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIA-WGVRKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT-TTCCEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 57999999984 433 444444 578999999988
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=83.26 E-value=6.4 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+...+.+... ..++.++..|..+. ++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 84 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRME-----GHDVSSVVMDVTNTESVQNAVRSV 84 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 46789999865432 34444443 468999999987665444433221 25788888886432 211
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
...+.|+|++.+.
T Consensus 85 ~~~~~~id~vi~~Ag 99 (260)
T 3awd_A 85 HEQEGRVDILVACAG 99 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 1246899999875
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.22 E-value=4.3 Score=34.64 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=50.0
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+.+.+.+... ..++.++..|..+. +..
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~ 77 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKE--GARVVITGRTKEKLEEAKLEIEQF-----PGQILTVQMDVRNTDDIQKMIEQI 77 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCS-----TTCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 45788888866442 34555554 468999999998877666544321 35788888886432 211
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++..+.
T Consensus 78 ~~~~g~id~lv~nAg 92 (257)
T 3imf_A 78 DEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 1247899999875
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.12 E-value=14 Score=32.06 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCH--HHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDE--EVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~--~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~ 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+. .-.+...+..... ..++.++..|..+. +.
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEEC-----GRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHT-----TCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHc-----CCcEEEEEecCCCHHHHHHHHH
Confidence 46789999976542 34555554 46899988873 3333333322221 25678888786432 21
Q ss_pred ---ccCCCceEEEEcCCC
Q 022451 171 ---SRKESYDVIIGDLAD 185 (297)
Q Consensus 171 ---~~~~~yD~Ii~D~~~ 185 (297)
..-++.|+++..+..
T Consensus 121 ~~~~~~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 121 KAREALGGLDILALVAGK 138 (294)
T ss_dssp HHHHHHTCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 122578999998763
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.04 E-value=6 Score=35.09 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+.... .++++.++..|..+. +.
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADEV 81 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46789999976553 45555554 4689999999987776665544221 124788888886332 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-.+.|+++..+.
T Consensus 82 ~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 82 EARFGPVSILCNNAG 96 (319)
T ss_dssp HHHTCCEEEEEECCC
T ss_pred HHhCCCCCEEEECCC
Confidence 12357899999876
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=82.81 E-value=4.5 Score=35.42 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=56.2
Q ss_pred CeEEEEccch--hHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+|.+||+|. +.++..+++.. +..+|+++|.+++-.+.+++.++ +++ ..|..+.+ +..|+|+
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~g----------i~~-~~~~~~~~----~~aDvVi 68 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCG----------VHT-TQDNRQGA----LNADVVV 68 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTC----------CEE-ESCHHHHH----SSCSEEE
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcC----------CEE-eCChHHHH----hcCCeEE
Confidence 5799999983 34556555542 23479999999998777665321 232 34544444 3479999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHccc-CCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPR-LNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~-L~pgGvl~~ 217 (297)
+-.+. . ...+.++. ++.. |+++-+++-
T Consensus 69 lav~p--------~-~~~~vl~~-l~~~~l~~~~iiiS 96 (280)
T 3tri_A 69 LAVKP--------H-QIKMVCEE-LKDILSETKILVIS 96 (280)
T ss_dssp ECSCG--------G-GHHHHHHH-HHHHHHTTTCEEEE
T ss_pred EEeCH--------H-HHHHHHHH-HHhhccCCCeEEEE
Confidence 98642 1 12467777 6777 776656553
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=82.78 E-value=8.9 Score=32.58 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=48.9
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh-
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~- 170 (297)
-..+.||+.|+++|. +++.+++. ..+|.+++.+++-.+...+.+ .+++.++..|..+ .+.
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~ 75 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEI--------GPAAYAVQMDVTRQDSIDAAIAA 75 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh--------CCCceEEEeeCCCHHHHHHHHHH
Confidence 356889999976542 34555554 468999999988766554433 1467788877632 221
Q ss_pred --ccCCCceEEEEcCCC
Q 022451 171 --SRKESYDVIIGDLAD 185 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~~ 185 (297)
..-++.|+++..+..
T Consensus 76 ~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 76 TVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHSSSCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 123579999998763
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=82.74 E-value=5 Score=34.27 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh-
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~- 170 (297)
-..+.+|+.|+++|. +++.+++. ..+|.+++.+++-.+...+.+... ..++.++..|..+. ++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQA-----GGKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence 356789998876543 34555554 468999999998776665554322 36788888886432 21
Q ss_pred --ccCCCceEEEEcCC
Q 022451 171 --SRKESYDVIIGDLA 184 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~ 184 (297)
..-++.|+++..+.
T Consensus 83 ~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 83 ALDQFGKITVLVNNAG 98 (256)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 11247999999875
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=82.71 E-value=7.1 Score=37.05 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhh-h-ccCCCC-------CCCeEEEEcchHHHHh
Q 022451 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLV-V-NKEAFS-------DPRLELVINDARAELE 170 (297)
Q Consensus 103 ~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~f~-~-~~~~~~-------~~rv~~~~~Da~~~l~ 170 (297)
-++|.+||+|. ++++..+++. .-+|+++|++++-. +..++.+. . ....+. -.++++. .|. +
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl-~--- 126 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF-H--- 126 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG-G---
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH-H---
Confidence 36899999994 5567777764 35899999999811 11111111 0 000000 0234432 332 1
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.-...|+||...+.. .-...++|+. +.+.++|+-+++.|+.
T Consensus 127 -al~~aDlVIeAVpe~-------~~vk~~v~~~-l~~~~~~~aIlasnTS 167 (460)
T 3k6j_A 127 -KLSNCDLIVESVIED-------MKLKKELFAN-LENICKSTCIFGTNTS 167 (460)
T ss_dssp -GCTTCSEEEECCCSC-------HHHHHHHHHH-HHTTSCTTCEEEECCS
T ss_pred -HHccCCEEEEcCCCC-------HHHHHHHHHH-HHhhCCCCCEEEecCC
Confidence 124589999987631 1124577888 7899999999988864
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=82.71 E-value=10 Score=33.69 Aligned_cols=71 Identities=23% Similarity=0.330 Sum_probs=42.5
Q ss_pred CCCeEEEEccchh-H-HHHHHH-hcCCCcEE-EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 102 NPKTIFIMGGGEG-S-TAREIL-RHKTVEKV-VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 102 ~~~~VL~iG~G~G-~-~~~~l~-~~~~~~~v-~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
++.+|.+||+|.= . .+..+. +. +..++ .++|.+++..+.+.+.++. + -...|..+.+.. ...|
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~-~~~~~vav~d~~~~~~~~~a~~~g~-------~---~~~~~~~~~l~~--~~~D 73 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKI-QGVKLVAACALDSNQLEWAKNELGV-------E---TTYTNYKDMIDT--ENID 73 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTC-SSEEEEEEECSCHHHHHHHHHTTCC-------S---EEESCHHHHHTT--SCCS
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcC-CCcEEEEEecCCHHHHHHHHHHhCC-------C---cccCCHHHHhcC--CCCC
Confidence 4568999999842 2 344444 33 34554 4679999877554432221 1 134566666642 4689
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
+|++..+.
T Consensus 74 ~V~i~tp~ 81 (346)
T 3cea_A 74 AIFIVAPT 81 (346)
T ss_dssp EEEECSCG
T ss_pred EEEEeCCh
Confidence 99987653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=82.58 E-value=6.4 Score=34.08 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
.++.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+... ..++.++..|..+. +..
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAA-----GHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 46789999976542 34555554 468999999998776665544322 35788888886432 211
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++..+.
T Consensus 96 ~~~~g~id~lv~nAg 110 (279)
T 3sju_A 96 VERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHCSCCEEEECCC
T ss_pred HHHcCCCcEEEECCC
Confidence 2257899999875
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=82.49 E-value=4 Score=37.11 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=40.1
Q ss_pred CCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhccCCCce
Q 022451 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~~~~~yD 177 (297)
.+..+||+||+| .|......+. ....|+++|++.+-++.+++. +..+..|+. +.+...-++.|
T Consensus 14 g~~mkilvlGaG~vG~~~~~~L~--~~~~v~~~~~~~~~~~~~~~~------------~~~~~~d~~d~~~l~~~~~~~D 79 (365)
T 3abi_A 14 GRHMKVLILGAGNIGRAIAWDLK--DEFDVYIGDVNNENLEKVKEF------------ATPLKVDASNFDKLVEVMKEFE 79 (365)
T ss_dssp --CCEEEEECCSHHHHHHHHHHT--TTSEEEEEESCHHHHHHHTTT------------SEEEECCTTCHHHHHHHHTTCS
T ss_pred CCccEEEEECCCHHHHHHHHHHh--cCCCeEEEEcCHHHHHHHhcc------------CCcEEEecCCHHHHHHHHhCCC
Confidence 345689999985 2333222332 235799999999888776543 223333432 22322224689
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+|++-++
T Consensus 80 vVi~~~p 86 (365)
T 3abi_A 80 LVIGALP 86 (365)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9988664
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=82.48 E-value=3.9 Score=35.90 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCCCeEEEEccchhHHHH----HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHH--HhccC
Q 022451 101 PNPKTIFIMGGGEGSTAR----EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAE--LESRK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~----~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~-~~Da~~~--l~~~~ 173 (297)
...++||+.|+. |.++. .+++. ..+|++++.++.-.+...+.+... ..++++++ .+|..+. +...-
T Consensus 9 ~~~~~vlVTGat-G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~ 81 (342)
T 1y1p_A 9 PEGSLVLVTGAN-GFVASHVVEQLLEH--GYKVRGTARSASKLANLQKRWDAK----YPGRFETAVVEDMLKQGAYDEVI 81 (342)
T ss_dssp CTTCEEEEETTT-SHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHH----STTTEEEEECSCTTSTTTTTTTT
T ss_pred CCCCEEEEECCc-cHHHHHHHHHHHHC--CCEEEEEeCCcccHHHHHHHhhcc----CCCceEEEEecCCcChHHHHHHH
Confidence 456789999853 55444 44443 358999999887655444333211 12578888 7886542 22222
Q ss_pred CCceEEEEcCC
Q 022451 174 ESYDVIIGDLA 184 (297)
Q Consensus 174 ~~yD~Ii~D~~ 184 (297)
+..|+||+.+.
T Consensus 82 ~~~d~vih~A~ 92 (342)
T 1y1p_A 82 KGAAGVAHIAS 92 (342)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEEeCC
Confidence 36899999875
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=82.23 E-value=1.8 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHHh--cCCCCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCH
Q 022451 84 DEFIYHESLVHPALL--HHPNPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 84 d~~~y~e~l~~~~l~--~~~~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (297)
+...|.+.+...... ..-...+||++|+|+ |+- +..|.. .+..+++.+|-|.
T Consensus 15 ~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~-~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 15 EAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLIL-AGVKGLTMLDHEQ 70 (346)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred HHHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCC
Confidence 345677765422211 112467999999974 333 344444 4688999998764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=82.21 E-value=11 Score=33.18 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=43.8
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+|.+||+|.=+ ++..+++..-..+|+.+|++++.++.....+. ... +...++++...|. +.+ +..|+|+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~d~-~~~----~~aDvVi 74 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA--NLEAHGNIVINDW-AAL----ADADVVI 74 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG--GSSSCCEEEESCG-GGG----TTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh--hcCCCeEEEeCCH-HHh----CCCCEEE
Confidence 379999987433 34444443212589999999987755443222 110 0112455545663 322 4589999
Q ss_pred EcCCCC
Q 022451 181 GDLADP 186 (297)
Q Consensus 181 ~D~~~~ 186 (297)
+-...+
T Consensus 75 iav~~~ 80 (309)
T 1hyh_A 75 STLGNI 80 (309)
T ss_dssp ECCSCG
T ss_pred EecCCc
Confidence 987643
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=82.00 E-value=14 Score=32.73 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++|.+||+|. ..+++.+.. . ..+|.++|.++.- +.+++. .++. .+..+.+. +.|+|
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~-~-G~~V~~~d~~~~~-~~~~~~-----------g~~~--~~l~ell~----~aDvV 200 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANA-L-GMNILLYDPYPNE-ERAKEV-----------NGKF--VDLETLLK----ESDVV 200 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-T-TCEEEEECSSCCH-HHHHHT-----------TCEE--CCHHHHHH----HCSEE
T ss_pred CCceEEEEccCHHHHHHHHHHHH-C-CCEEEEECCCCCh-hhHhhc-----------Cccc--cCHHHHHh----hCCEE
Confidence 467899999872 233444444 3 3689999998865 333331 1222 24445553 47999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
++..+.... ...++..+.+ +.+++|+++ +|++.- ..-...++.+.+++
T Consensus 201 ~l~~p~~~~---t~~li~~~~l-----~~mk~ga~l-in~arg----~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 201 TIHVPLVES---TYHLINEERL-----KLMKKTAIL-INTSRG----PVVDTNALVKALKE 248 (307)
T ss_dssp EECCCCSTT---TTTCBCHHHH-----HHSCTTCEE-EECSCG----GGBCHHHHHHHHHH
T ss_pred EEecCCChH---HhhhcCHHHH-----hcCCCCeEE-EECCCC----cccCHHHHHHHHHh
Confidence 999874221 1355555443 456777765 575321 11122455566654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.00 E-value=9 Score=33.21 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
..+.||+.|+++|. +++.+++. ..+|++++.++.-.+.+.+.+..........++.++..|..+. +..
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 45789999965432 34444443 4689999999877665544433210000135788898886432 211
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+||..+.
T Consensus 95 ~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 95 LDTFGKINFLVNNGG 109 (303)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 1246999999875
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.97 E-value=6.8 Score=33.63 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=48.0
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECC------------HHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDID------------EEVVEFCKSYLVVNKEAFSDPRLELVINDAR 166 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid------------~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~ 166 (297)
..+.||+.|+++|. +++.+++. ..+|.+++.+ ++-++...+.+... ..++.++..|..
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~ 84 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-----GSRIVARQADVR 84 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-----TCCEEEEECCTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhc-----CCeEEEEeCCCC
Confidence 56889999976542 45555554 4689999987 55554444433322 257888888864
Q ss_pred H------HHhc---cCCCceEEEEcCC
Q 022451 167 A------ELES---RKESYDVIIGDLA 184 (297)
Q Consensus 167 ~------~l~~---~~~~yD~Ii~D~~ 184 (297)
+ .+.. .-++.|++|..+.
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3 2221 1247999999875
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=81.95 E-value=1.7 Score=38.79 Aligned_cols=90 Identities=17% Similarity=0.329 Sum_probs=55.1
Q ss_pred eEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-ch-HHHHhc-cCCCceEE
Q 022451 105 TIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA-RAELES-RKESYDVI 179 (297)
Q Consensus 105 ~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~-Da-~~~l~~-~~~~yD~I 179 (297)
+||++|+ |.|..+.++++..+ .+|++++.+++-.+.+++. +.. .++.. |. .+.++. ....+|+|
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~~l-Ga~---------~v~~~~~~~~~~~~~~~~~~~d~v 221 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQL-GAS---------EVISREDVYDGTLKALSKQQWQGA 221 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHH-TCS---------EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCc---------EEEECCCchHHHHHHhhcCCccEE
Confidence 8999996 45666777777654 4799999998888888763 211 11111 10 011111 23469988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-... . +.++. +.++|+++|.++.-.
T Consensus 222 id~~g-----~--------~~~~~-~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 222 VDPVG-----G--------KQLAS-LLSKIQYGGSVAVSG 247 (330)
T ss_dssp EESCC-----T--------HHHHH-HHTTEEEEEEEEECC
T ss_pred EECCc-----H--------HHHHH-HHHhhcCCCEEEEEe
Confidence 75431 1 23555 578999999987653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=81.79 E-value=21 Score=31.53 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=53.9
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHH-HHh--hhhhccCCCCCCCeEEE-EcchHHHHhccCCCceE
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEF-CKS--YLVVNKEAFSDPRLELV-INDARAELESRKESYDV 178 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~-a~~--~f~~~~~~~~~~rv~~~-~~Da~~~l~~~~~~yD~ 178 (297)
+|.+||+|.=+ ++..++......+|..+|++++.++- +.. +.... + ....++. ..| .+-+ +..|+
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~---~-~~~~~i~~t~d-~~a~----~~aDi 72 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---I-DKYPKIVGGAD-YSLL----KGSEI 72 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---T-TCCCEEEEESC-GGGG----TTCSE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhh---c-CCCCEEEEeCC-HHHh----CCCCE
Confidence 68899997432 33334443333489999999987652 111 11100 0 1233444 345 3333 34799
Q ss_pred EEEcCCCCCCCCC-ccCcc--c----HHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~--t----~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++-...|...+. ...|+ + +++.+. +.+. .|++++++-++
T Consensus 73 VViaag~~~kpG~~R~dl~~~N~~i~~~i~~~-i~~~-~p~a~iivvsN 119 (294)
T 1oju_A 73 IVVTAGLARKPGMTRLDLAHKNAGIIKDIAKK-IVEN-APESKILVVTN 119 (294)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH-HHTT-STTCEEEECSS
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHHHHHH-HHhh-CCCeEEEEeCC
Confidence 9987665431111 01111 1 123333 3444 89999877653
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=81.72 E-value=8.5 Score=33.36 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=49.1
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhcc
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESR 172 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~~ 172 (297)
.++.||+.|+++|. +++.+++. ..+|.+++.++.-.+.+.+.+ ..++.++..|..+ +++..
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~d~~~v~~~~~~~ 84 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARR--GATVIMAVRDTRKGEAAARTM--------AGQVEVRELDLQDLSSVRRFADGV 84 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHTTS--------SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh--------cCCeeEEEcCCCCHHHHHHHHHhc
Confidence 56889999876442 34555554 468999999988776665533 2578888888643 22222
Q ss_pred CCCceEEEEcCC
Q 022451 173 KESYDVIIGDLA 184 (297)
Q Consensus 173 ~~~yD~Ii~D~~ 184 (297)
.+.|+++..+.
T Consensus 85 -~~iD~lv~nAg 95 (291)
T 3rd5_A 85 -SGADVLINNAG 95 (291)
T ss_dssp -CCEEEEEECCC
T ss_pred -CCCCEEEECCc
Confidence 57899999875
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=81.67 E-value=1.4 Score=40.94 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=36.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYL 146 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~f 146 (297)
.+.+-+|+++|.|.|.++.-+++. ....++..||++|...+.=++.+
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 355668999999999998777753 12458999999999988666654
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=81.58 E-value=13 Score=33.13 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=48.8
Q ss_pred cCCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 99 HHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..++.+++++||+|.=+ .+..+++..+..+|.+++.+++-.+...+.+... .-.+. ..|..+.+ ..
T Consensus 121 a~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-----~~~~~--~~~~~e~v-----~a 188 (322)
T 1omo_A 121 ARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-----GISAS--VQPAEEAS-----RC 188 (322)
T ss_dssp SCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-----TCCEE--ECCHHHHT-----SS
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-----CceEE--ECCHHHHh-----CC
Confidence 34678899999998432 3444555446789999999998776655554321 01222 55655544 38
Q ss_pred eEEEEcCCC
Q 022451 177 DVIIGDLAD 185 (297)
Q Consensus 177 D~Ii~D~~~ 185 (297)
|+|++-.+.
T Consensus 189 DvVi~aTp~ 197 (322)
T 1omo_A 189 DVLVTTTPS 197 (322)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeeCC
Confidence 999998764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=81.45 E-value=5.6 Score=37.59 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=44.8
Q ss_pred CeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
-+|+++|+|- |.. ++.|.. ....|++||.|++.++.+.+.+ .+.++.||+.. .|+.. -++.|+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~~~~~~~~~~~----------~~~~i~Gd~~~~~~L~~Agi~~ad~ 71 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVG--ENNDITIVDKDGDRLRELQDKY----------DLRVVNGHASHPDVLHEAGAQDADM 71 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCHHHHHHHHHHS----------SCEEEESCTTCHHHHHHHTTTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHhc----------CcEEEEEcCCCHHHHHhcCCCcCCE
Confidence 3799999873 222 333322 2468999999999998776543 36788899854 35443 367888
Q ss_pred EEEcC
Q 022451 179 IIGDL 183 (297)
Q Consensus 179 Ii~D~ 183 (297)
++.-.
T Consensus 72 ~ia~t 76 (461)
T 4g65_A 72 LVAVT 76 (461)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 77643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 297 | ||||
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 5e-73 | |
| d1uira_ | 312 | c.66.1.17 (A:) Spermidine synthase {Thermus thermo | 5e-69 | |
| d1inla_ | 295 | c.66.1.17 (A:) Spermidine synthase {Thermotoga mar | 5e-69 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 2e-65 | |
| d1iy9a_ | 274 | c.66.1.17 (A:) Spermidine synthase {Bacillus subti | 2e-65 | |
| d1xj5a_ | 290 | c.66.1.17 (A:) Spermidine synthase {Thale cress (A | 4e-62 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 3e-59 |
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 225 bits (573), Expect = 5e-73
Identities = 74/228 (32%), Positives = 132/228 (57%), Gaps = 6/228 (2%)
Query: 39 NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL 98
+S + +L +++YQD+ + ++ +G LV+DG +Q+ E DEF Y E L H +
Sbjct: 43 GQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMF 102
Query: 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158
HP+PK + I+GGG+G RE+L+H++VEKV MC+IDE V++ K +L FS P+L
Sbjct: 103 AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKL 162
Query: 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218
+L D L++ K +DVII D +DP+ GP L+ +S+YE +++ L +GI +Q
Sbjct: 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQ 219
Query: 219 AGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMVS 265
++ H + + + R++F V + + ++ + G+++ +
Sbjct: 220 GE--SVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICA 265
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Score = 215 bits (547), Expect = 5e-69
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 4/237 (1%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
++ E + + ++ +G+T +QD L ++K FGK L++D +QS E DE+IYHE
Sbjct: 6 YFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHE 65
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VN 149
+LVHPA+L HP PK + I+GGGEG+T RE+L+H TVEK VM DID E+VE K ++ +
Sbjct: 66 TLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH 125
Query: 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EGGPCYKLYTKSFYEFVVKPR 208
+ AF DPR LVI+DARA LE +E YDV+I DL DP+ E P LYT FY +VK
Sbjct: 126 QGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYR-LVKAH 184
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
LNP G+ Q G + +H V ++ T+R+ F+YV Y HIP F +G+++ S
Sbjct: 185 LNPGGVMGMQTGMI-LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLAS 240
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Score = 214 bits (545), Expect = 5e-69
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 6/241 (2%)
Query: 27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDE 85
R+ WY E N+ +N ++++G++ Q I + + G +DG + E DE
Sbjct: 13 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDE 72
Query: 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145
F+YHE L H + HPNPK + I+GGG+G T RE+L+H +VEK ++C++D V+E + Y
Sbjct: 73 FMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKY 132
Query: 146 LVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
L F DPR E+VI + + K +DVII D DP G L+T+ FY+
Sbjct: 133 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGG-HLFTEEFYQACY 191
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMV 264
+G+F + F F Y + +VF Y + ++ + W +
Sbjct: 192 DAL-KEDGVFSAETE--DPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 248
Query: 265 S 265
S
Sbjct: 249 S 249
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 205 bits (521), Expect = 2e-65
Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 8/238 (3%)
Query: 31 WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E S + +LH +RYQDI + +K +G LV+DG +Q E DEF Y
Sbjct: 5 WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 64
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
E + + L HPNP+ + I+GGG+G RE+++H +VE VV C+IDE+V++ K +L
Sbjct: 65 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 124
Query: 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPR 208
+S +L L + D ++ ++++DVII D +DP+ GP L+ +S+Y+ +K
Sbjct: 125 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQL-MKTA 181
Query: 209 LNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVS 265
L +G+ Q + H ++ + + +F V IP++ G+++ S
Sbjct: 182 LKEDGVLCCQGE--CQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCS 237
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Score = 204 bits (519), Expect = 2e-65
Identities = 78/236 (33%), Positives = 136/236 (57%), Gaps = 6/236 (2%)
Query: 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHE 90
WY E+ +N + +N LHT +T +Q + +++T+ FG L +DG + ++E DEF+YHE
Sbjct: 4 WYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHE 63
Query: 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK 150
+ H L HPNP+ + ++GGG+G REIL+H +V+K + DID +V+E+ K +L
Sbjct: 64 MVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA 123
Query: 151 EAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN 210
DPR+++ ++D + + YDVI+ D +P+ GP L+TK FY + L
Sbjct: 124 GKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAG-IAKALK 180
Query: 211 PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMVS 265
+GIFV Q + E+ + + ++++F Y+A+IP++ + W + + S
Sbjct: 181 EDGIFVAQTD--NPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGS 234
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 196 bits (499), Expect = 4e-62
Identities = 81/240 (33%), Positives = 134/240 (55%), Gaps = 10/240 (4%)
Query: 31 WYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIY 88
W+ E S + +L G++ YQD+ + + +GK LV+DG +Q E DE Y
Sbjct: 7 WFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAY 66
Query: 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148
E + H L PNPK + ++GGG+G RE+ RH ++E++ MC+ID+ VV+ K +
Sbjct: 67 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD 126
Query: 149 NKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP 207
+ DPR+ LVI D A L++ + SYD +I D +DPI GP +L+ K F++ V +
Sbjct: 127 VAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR- 183
Query: 208 RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSF-ADTWGWIMVS 265
L P G+ TQA ++ H ++ I + R++FK V Y+ +P++ + G+++ S
Sbjct: 184 ALRPGGVVCTQAE--SLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS 241
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 188 bits (479), Expect = 3e-59
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 13/240 (5%)
Query: 32 YEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHES 91
+ E +F + ++ ++YQ I + +T+ FG+ L +DG +Q + E YHE
Sbjct: 2 FIEWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEP 61
Query: 92 LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE 151
LVHPA+L HP PK + ++GGG+G T RE+L+H V++V+M +IDE+V+ K + ++
Sbjct: 62 LVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNG 120
Query: 152 AF------SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205
+ +L I D ++ +DVII D DP+ P L+++ FY + V
Sbjct: 121 LLEAMLNGKHEKAKLTIGDGFEFIK-NNRGFDVIIADSTDPVG--PAKVLFSEEFYRY-V 176
Query: 206 KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVS 265
LN GI+VTQAG ++ T+ Y +++VF V YS + +A W +++
Sbjct: 177 YDALNNPGIYVTQAGS--VYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGV 234
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 100.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 100.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 100.0 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 100.0 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 100.0 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.6 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.53 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.53 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.52 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.51 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.51 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.5 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.49 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.48 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.48 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.46 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.44 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.43 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.42 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.42 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.41 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.41 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.41 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.4 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.4 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.4 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.39 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.38 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.37 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.36 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.35 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.35 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.34 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.33 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.32 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.32 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.31 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.31 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.28 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.28 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.27 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.26 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.26 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.25 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.25 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.24 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.23 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.22 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.22 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.19 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.17 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.16 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.11 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.11 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.11 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.1 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.1 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.09 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.09 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.08 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.06 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.05 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.93 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.88 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.82 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.77 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.71 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.58 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.56 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.51 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.49 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.42 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.37 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.3 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.26 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.26 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.23 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.17 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.15 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.09 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.08 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.07 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.07 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.05 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.04 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.0 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.99 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.98 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.9 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.87 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.46 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.38 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.3 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.27 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.21 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.11 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.04 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.0 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.99 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.61 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.54 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.52 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.44 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.02 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.02 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.82 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.81 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.81 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.47 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.4 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 95.31 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.13 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.11 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.03 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.88 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 94.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.53 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.51 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.86 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.83 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.78 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.52 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.47 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.37 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.29 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.22 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.19 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 93.0 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.97 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.85 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.8 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.12 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 92.05 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.89 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.75 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.61 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 91.23 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 90.3 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.2 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 90.13 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 90.1 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.04 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.94 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 89.79 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 89.36 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 89.35 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 89.23 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 89.12 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 88.99 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.85 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.45 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 88.38 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.23 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 87.99 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 87.98 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 87.93 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.88 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 87.86 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 87.86 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.83 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.79 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 87.72 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 87.7 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 87.57 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 87.37 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 86.92 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.88 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.84 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 86.74 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.69 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 86.67 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 86.58 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 86.45 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 86.42 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 86.28 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.25 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 86.07 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 86.02 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.95 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 85.72 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.65 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.49 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 85.45 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 85.37 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 85.29 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 85.17 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.1 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 85.05 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.96 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 84.94 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 84.77 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.67 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 84.4 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 84.16 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.11 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.94 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 83.45 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 83.34 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 83.32 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 83.1 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 83.03 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 82.68 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.62 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.34 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 82.25 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 82.04 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 81.99 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.98 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 81.65 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 81.3 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 81.28 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 81.18 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 81.16 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 81.13 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 81.1 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 80.87 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 80.8 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 80.69 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.58 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 80.46 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 80.43 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.39 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 80.35 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 80.32 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 80.04 |
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5e-53 Score=383.67 Aligned_cols=262 Identities=29% Similarity=0.553 Sum_probs=224.6
Q ss_pred cccceEEeeec-cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCe
Q 022451 27 RKSCWYEEEIE-ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105 (297)
Q Consensus 27 ~~~~w~~~~~~-~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~ 105 (297)
+...|+.|..+ ++.+..++++++|++++|+||+|+|++++.+|++|+|||.+|++++|++.|||+|+|+|++.+++|++
T Consensus 13 ~~~~w~~e~~~~~~~~~~~~v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~ 92 (295)
T d1inla_ 13 RQHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKK 92 (295)
T ss_dssp CSSEEEEEECTTSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCcEEEEecccCCCceEEEEEEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCce
Confidence 34679999765 67889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
||+||+|+|+++++++++.+..+|++|||||.|+++|++||+.....++|||++++++||++|++..+++||+|++|+++
T Consensus 93 VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~d 172 (295)
T d1inla_ 93 VLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTD 172 (295)
T ss_dssp EEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC--
T ss_pred EEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCC
Confidence 99999999999999999988899999999999999999999866556789999999999999999988999999999998
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMV 264 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~a 264 (297)
|.. .+...|++.+||+. ++++|+|||++++|..+| +.+.+.+..+.++++++|+.+.+|.+.+|+|+ +.|+|++|
T Consensus 173 p~~-~~~~~L~t~efy~~-~~~~L~~~Gi~v~q~~sp--~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~a 248 (295)
T d1inla_ 173 PTA-GQGGHLFTEEFYQA-CYDALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 248 (295)
T ss_dssp ---------CCSHHHHHH-HHHHEEEEEEEEEECCCT--TTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred CCc-CchhhhccHHHHHH-HHhhcCCCcEEEEecCCh--hhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEE
Confidence 863 45568999999999 799999999999999887 66888999999999999999999999999995 57999999
Q ss_pred ecCCCCCCcccccccccccCCCCCCcccCCC
Q 022451 265 SIYNPHSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 265 s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
|+.+.+. +.+...+--......+|||+-
T Consensus 249 Sk~~~p~---~~~~~~~~~~~~~~l~yy~~~ 276 (295)
T d1inla_ 249 SKGIDPI---KDFDPEKVRKFNKELKYYNEE 276 (295)
T ss_dssp ESSCCTT---TTCCHHHHHTCSSCCSSCCHH
T ss_pred eCCCCcc---cccCHHHHhhccCCCeecCHH
Confidence 9986432 222221111223467888864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-53 Score=381.84 Aligned_cols=262 Identities=29% Similarity=0.576 Sum_probs=224.5
Q ss_pred ccceEEeeec--cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCe
Q 022451 28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105 (297)
Q Consensus 28 ~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~ 105 (297)
...|+.|..+ ++.+.+|+++++|++++|+||+|.|++++++|++|++||.+|+++.|++.|||+|+|+|++.+++|++
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~ 81 (285)
T d2o07a1 2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRK 81 (285)
T ss_dssp BTTEEEECCTTSTTEEEEEEEEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCE
T ss_pred CCCcccccccCCCCceEEEEEeeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCe
Confidence 4689999876 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
||+||+|+|+++++++++++..+|++|||||+|+++|++||+.....+++||++++++||++||+..+++||+|++|+++
T Consensus 82 vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~ 161 (285)
T d2o07a1 82 VLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD 161 (285)
T ss_dssp EEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-
T ss_pred EEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC
Confidence 99999999999999999988899999999999999999999754445678999999999999999888899999999998
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEE
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMV 264 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~a 264 (297)
|. +++..|+|++||+. ++++|+|||++++|..+| ....+.++.+.++++++|+.+.+|.+.+|+|+ +.|+|++|
T Consensus 162 p~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~a 236 (285)
T d2o07a1 162 PM--GPAESLFKESYYQL-MKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLC 236 (285)
T ss_dssp ------------CHHHHH-HHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred CC--CcccccccHHHHHH-HHHhcCCCCeEEEeccch--hhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEE
Confidence 87 45579999999999 799999999999998877 56778899999999999999999999999995 56999999
Q ss_pred ecCCCC--CCcccccccccccCCCCCCcccCCCC
Q 022451 265 SIYNPH--SHSILSLSYFENLDSSRPNSFTSPIN 296 (297)
Q Consensus 265 s~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~ 296 (297)
|+.+.. .+++..+.+.+.. +.+.+|||+--
T Consensus 237 Sk~p~~~~~~~~~~~~~~~~~--~~~l~yYn~~~ 268 (285)
T d2o07a1 237 SKNPSTNFQEPVQPLTQQQVA--QMQLKYYNSDV 268 (285)
T ss_dssp ESSTTCCSSSCSSCCCHHHHH--HTTCSSCCHHH
T ss_pred ECCccccccccchhhHHHHhh--CCCceEeCHHH
Confidence 998744 3344444443322 33689998743
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6.1e-52 Score=373.76 Aligned_cols=256 Identities=30% Similarity=0.629 Sum_probs=230.1
Q ss_pred cceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEE
Q 022451 29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI 108 (297)
Q Consensus 29 ~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~ 108 (297)
++|++|..+++.+..|+++++|++++|+||+|+|+++..+|++|+|||.+|++++|++.|||+|+|+|++.+++|++||+
T Consensus 2 ~~w~~e~~~~~~~~~~~i~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLi 81 (274)
T d1iy9a_ 2 ELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV 81 (274)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred CcceeeecCCCceEEEEEeeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCC
Q 022451 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIE 188 (297)
Q Consensus 109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~ 188 (297)
||+|+|+++++++++.+..+|++|||||+|+++|++||+.....+++||++++.+||+.||+..+++||+|++|+++|.
T Consensus 82 iGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~- 160 (274)
T d1iy9a_ 82 VGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV- 160 (274)
T ss_dssp ESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCC-
T ss_pred cCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCC-
Confidence 9999999999999998889999999999999999999987666788999999999999999988899999999999987
Q ss_pred CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEecC
Q 022451 189 GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVSIY 267 (297)
Q Consensus 189 ~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as~~ 267 (297)
+++..|++++||+. ++++|+|||++++|.++| +...+.+..+.++++++|+++.+|.+.+|+|+ +.|.|++||++
T Consensus 161 -~~~~~L~t~eFy~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~ 236 (274)
T d1iy9a_ 161 -GPAVNLFTKGFYAG-IAKALKEDGIFVAQTDNP--WFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK 236 (274)
T ss_dssp -SCCCCCSTTHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred -CcchhhccHHHHHH-HHhhcCCCceEEEecCCc--cccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCC
Confidence 45578999999999 799999999999998877 56788889999999999999999999999995 56999999987
Q ss_pred CCCCCcccccccccccCCCCCCcccCCC
Q 022451 268 NPHSHSILSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 268 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 295 (297)
..+... ...+.. ....+|||+-
T Consensus 237 ~~p~~~----~~~~~~--~~~~kyyn~~ 258 (274)
T d1iy9a_ 237 YDPLAV----EDSRFF--DIETKYYTKD 258 (274)
T ss_dssp CCTTCC----CGGGCC--CCCCSSCCHH
T ss_pred CCcccc----hhhhcc--CCCCcccCHH
Confidence 533211 111111 2346888863
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.1e-52 Score=381.15 Aligned_cols=251 Identities=30% Similarity=0.600 Sum_probs=211.4
Q ss_pred cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHH
Q 022451 38 ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA 117 (297)
Q Consensus 38 ~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~ 117 (297)
|+.+.++.++++|++++|+||+|+|++++.+|++|+|||.+|+++.|++.|||+|+|+|++.+++|++||+||+|+|+++
T Consensus 42 pg~~~~~~v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~ 121 (312)
T d2b2ca1 42 PGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGIL 121 (312)
T ss_dssp TTEEEEEEEEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHH
T ss_pred CCceEEEEEEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCccc
Q 022451 118 REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197 (297)
Q Consensus 118 ~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t 197 (297)
++++++.+..+|++|||||.|+++|++||+.....+++||++++++||++|++..+++||+||+|+++|. +++..|++
T Consensus 122 rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp~--~~~~~L~t 199 (312)
T d2b2ca1 122 REVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFG 199 (312)
T ss_dssp HHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------
T ss_pred HHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCCC--Ccchhhhh
Confidence 9999998889999999999999999999986655678999999999999999988899999999999986 45579999
Q ss_pred HHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC-CceeEEEEecCCCC--CCcc
Q 022451 198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMVSIYNPH--SHSI 274 (297)
Q Consensus 198 ~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~-~~~~~~~as~~~~~--~~~i 274 (297)
++||+. ++++|+|||++++|.++| +...+.+..+.++++++|+.+.+|.+.+|+|+ +.|+|++||+.... ..+.
T Consensus 200 ~eFy~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~~~~~~p~ 276 (312)
T d2b2ca1 200 QSYYEL-LRDALKEDGILSSQGESV--WLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNANRDVTTPA 276 (312)
T ss_dssp --HHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESSTTCCTTSCS
T ss_pred HHHHHH-HHhhcCCCcEEEEecCCh--HHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCCCccccCcc
Confidence 999999 799999999999998877 66788899999999999999999999999995 57999999987643 2233
Q ss_pred cccccccccCCCCCCcccCCC
Q 022451 275 LSLSYFENLDSSRPNSFTSPI 295 (297)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~ 295 (297)
+.+..++. .....+|||+-
T Consensus 277 ~~~~~~~~--~~~~lryYn~~ 295 (312)
T d2b2ca1 277 RTLTAEQI--KALNLRFYNSE 295 (312)
T ss_dssp SCCCHHHH--HHTTCSSCCHH
T ss_pred hhhhHHhh--hccCceeECHH
Confidence 33322221 11257898874
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.3e-51 Score=374.23 Aligned_cols=264 Identities=33% Similarity=0.625 Sum_probs=232.8
Q ss_pred ccceEEeeec--cccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCe
Q 022451 28 KSCWYEEEIE--ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKT 105 (297)
Q Consensus 28 ~~~w~~~~~~--~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~ 105 (297)
.++|+.|..+ ++.+.++++.++|++++|+||+|+|+++..+||+|+|||.+|++++|++.|||+|+|+|++.+++|++
T Consensus 4 ~~~w~~e~~~~~~~~~~~~~v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~ 83 (290)
T d1xj5a_ 4 IPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKK 83 (290)
T ss_dssp CSSEEEECCTTSTTEEEEEEEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCE
T ss_pred CCcceeccccCCCCceEEEEEeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcc
Confidence 4579999765 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc-CCCceEEEEcCC
Q 022451 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLA 184 (297)
Q Consensus 106 VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~-~~~yD~Ii~D~~ 184 (297)
||+||+|+|+++++++++.+..+|++|||||+|+++|++||+.....+++||++++.+||++|++.. +++||+||+|++
T Consensus 84 VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~ 163 (290)
T d1xj5a_ 84 VLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSS 163 (290)
T ss_dssp EEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCC
T ss_pred eEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCC
Confidence 9999999999999999998889999999999999999999986555578999999999999999765 458999999999
Q ss_pred CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE-EecCccC-CceeEE
Q 022451 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS-AHIPSFA-DTWGWI 262 (297)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~-~~vp~~~-~~~~~~ 262 (297)
+|. +++..|+|++||+. ++++|+|||++++|.++| +...+.++.+.++++++|+.+.+|. +.+|+|+ +.|+|+
T Consensus 164 dp~--~~~~~L~t~eF~~~-~~~~L~~~Gi~v~q~~s~--~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~ 238 (290)
T d1xj5a_ 164 DPI--GPAKELFEKPFFQS-VARALRPGGVVCTQAESL--WLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFM 238 (290)
T ss_dssp CTT--SGGGGGGSHHHHHH-HHHHEEEEEEEEEECCCT--TTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEE
T ss_pred CCC--CcchhhCCHHHHHH-HHHhcCCCcEEEEecCCc--HHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEE
Confidence 987 56689999999999 799999999999999877 5678889999999999999999886 7899995 569999
Q ss_pred EEecCCCCC---CcccccccccccCCCCCCcccCCCCC
Q 022451 263 MVSIYNPHS---HSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 263 ~as~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
+||+++... +++..++.. ..+.....+|||+..|
T Consensus 239 ~as~~~~~~~~~~~~~~~~~~-~~~~~~~l~yYn~~ih 275 (290)
T d1xj5a_ 239 LCSTEGPDVDFKHPLNPIDES-SSKSNGPLKFYNAEIH 275 (290)
T ss_dssp EEECSSSCCCSSSCSSCCCSG-GGTTTCCCSSCCHHHH
T ss_pred EEeCCCCccccccccchhHHH-HHhhcCCCcccCHHHH
Confidence 999886542 344444422 2255677899997543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.3e-52 Score=379.29 Aligned_cols=242 Identities=44% Similarity=0.740 Sum_probs=218.8
Q ss_pred cccceEEeeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeE
Q 022451 27 RKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (297)
Q Consensus 27 ~~~~w~~~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~V 106 (297)
..++|++|.++++.+..+++.++|++++|+||+|.|++++.+|++|+|||.+|++++||+.|||+|+|+|++.+++|++|
T Consensus 2 ~~~~~~~e~~~~~~~~~~~~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~V 81 (312)
T d1uira_ 2 DYGMYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRV 81 (312)
T ss_dssp CSSCEEEEESSSSEEEEEECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEE
T ss_pred CCcEEEEEecCCCceEEEEEEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC
Q 022451 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (297)
Q Consensus 107 L~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~ 185 (297)
|+||+|+|+++++++++.+..+|++|||||+|+++|++||+. ....+++||++++++||++|++..+++||+|++|+++
T Consensus 82 LiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~d 161 (312)
T d1uira_ 82 LIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTD 161 (312)
T ss_dssp EEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCC
T ss_pred EEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCC
Confidence 999999999999999998889999999999999999999974 3445678999999999999999888899999999998
Q ss_pred CCC-CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEE
Q 022451 186 PIE-GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMV 264 (297)
Q Consensus 186 ~~~-~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~a 264 (297)
|.. ..++..|+|++||+. ++++|+|||++++|.+++. ....+..+.+.++++++|++|.+|.+.+|+|++.|+|++|
T Consensus 162 p~~~~~~~~~L~t~eF~~~-~~~~L~p~Gvlv~~~~s~~-~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~a 239 (312)
T d1uira_ 162 PVGEDNPARLLYTVEFYRL-VKAHLNPGGVMGMQTGMIL-LTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLA 239 (312)
T ss_dssp CBSTTCGGGGGSSHHHHHH-HHHTEEEEEEEEEEEEEEC-C---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEE
T ss_pred cccccchhhhhhhHHHHHH-HHHhcCCCceEEEecCCcc-cchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEE
Confidence 753 335568999999999 7999999999999986652 2334566788899999999999999999999988999999
Q ss_pred ecCCCC
Q 022451 265 SIYNPH 270 (297)
Q Consensus 265 s~~~~~ 270 (297)
|+.+.+
T Consensus 240 S~~~~p 245 (312)
T d1uira_ 240 SDAFDP 245 (312)
T ss_dssp ESSSCT
T ss_pred eCCCCc
Confidence 998644
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-48 Score=352.88 Aligned_cols=252 Identities=31% Similarity=0.594 Sum_probs=217.2
Q ss_pred eeeccccccccccccEEEEeeCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccch
Q 022451 34 EEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGE 113 (297)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~ 113 (297)
|..+++.+..|++.++|++++|+||+|+|+++..+||+|+|||.+|+++.|++.|||+|+|+|++.+++|++||+||+|+
T Consensus 4 e~~~~~~~~~~~~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~ 83 (276)
T d1mjfa_ 4 EWYPRGYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGD 83 (276)
T ss_dssp EEEGGGEEEEECEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTT
T ss_pred eEecCCceEEEEEeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCCc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC------CCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCC
Q 022451 114 GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------AFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (297)
Q Consensus 114 G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~------~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~ 187 (297)
|+++++++++. ..+|++|||||+|+++|++||+.... ...+||++++++||+.|++. .++||+||+|+++|.
T Consensus 84 G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~yDvIi~D~~~~~ 161 (276)
T d1mjfa_ 84 GGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPV 161 (276)
T ss_dssp SHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC
T ss_pred hHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCCCCEEEEeCCCCC
Confidence 99999999975 57999999999999999999975432 23689999999999999976 578999999999886
Q ss_pred CCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecC
Q 022451 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIY 267 (297)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~ 267 (297)
+++..|+|.+||+. ++++|+|||++++|.++| +...+.+..+.++++++|++|.+|.+.+|+|++.|+|++||+.
T Consensus 162 --~~~~~L~t~eF~~~-~~~~L~~~Gv~v~q~~s~--~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~ 236 (276)
T d1mjfa_ 162 --GPAKVLFSEEFYRY-VYDALNNPGIYVTQAGSV--YLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG 236 (276)
T ss_dssp -------TTSHHHHHH-HHHHEEEEEEEEEEEEET--TTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred --CCcccccCHHHHHh-hHhhcCCCceEEEecCCc--chhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCC
Confidence 45579999999999 799999999999998777 5577888999999999999999999999999888999999998
Q ss_pred CCCCCcccccccccccCCCCCCcccCCCCC
Q 022451 268 NPHSHSILSLSYFENLDSSRPNSFTSPINH 297 (297)
Q Consensus 268 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 297 (297)
+.+... +++.+.. +..++|||+-.|
T Consensus 237 ~~~~~~---~~~~~~~--~~~~~yy~~~~h 261 (276)
T d1mjfa_ 237 DIDFTK---IDRERAK--KLQLEYYDPLMH 261 (276)
T ss_dssp SCCTTC---CCHHHHH--TSCCSSCCGGGG
T ss_pred CCChhh---cChhhhh--cCCCeeECHHHH
Confidence 755333 2222221 124788887654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=1.5e-14 Score=121.75 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=115.2
Q ss_pred CCCcEEEEEeCCceeEEEE---cCccccccCChhhHHHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEE
Q 022451 56 RYQDIALLDTKPFGKALVI---DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132 (297)
Q Consensus 56 ~~~~i~V~~~~~~g~~L~l---dg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~V 132 (297)
..++.+.++....|+-+.+ .|.+.....| .-.+.|.. .+...++++|||+|||+|.++..+++.. .+|+++
T Consensus 7 ~~~~~~~~~~~~~g~~~~~~t~~gvF~~~~~d--~~t~lLi~--~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~i 80 (194)
T d1dusa_ 7 TKSDVKIVEDILRGKKLKFKTDSGVFSYGKVD--KGTKILVE--NVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMA 80 (194)
T ss_dssp SCCCEEEEEEEETTEEEEEEEETTSTTTTSCC--HHHHHHHH--HCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEE
T ss_pred CccceEEEEEEECCeeEEEEcCCCccCCCCcC--HHHHHHHH--hCCcCCCCeEEEEeecCChhHHHHHhhc--ccccee
Confidence 4555566665444554432 2333111222 12344432 2334678999999999999999998864 589999
Q ss_pred ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC
Q 022451 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE 212 (297)
Q Consensus 133 Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg 212 (297)
|+|+.+++.|++++..++ +.+.+++++.+|..+.+. +++||+|+++++-.. + .-...++++. +.++|+||
T Consensus 81 D~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~--~---~~~~~~~l~~-~~~~Lkpg 150 (194)
T d1dusa_ 81 DINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRA--G---KEVLHRIIEE-GKELLKDN 150 (194)
T ss_dssp ESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTT--C---HHHHHHHHHH-HHHHEEEE
T ss_pred eeccccchhHHHHHHHhC--CccceEEEEEcchhhhhc--cCCceEEEEcccEEe--c---chhhhhHHHH-HHHhcCcC
Confidence 999999999999887553 345789999999877553 578999999976322 1 1123568888 79999999
Q ss_pred cEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 213 GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 213 Gvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
|++++... .......+...+++.|..+...
T Consensus 151 G~l~i~~~------~~~~~~~~~~~l~~~f~~~~~~ 180 (194)
T d1dusa_ 151 GEIWVVIQ------TKQGAKSLAKYMKDVFGNVETV 180 (194)
T ss_dssp EEEEEEEE------STHHHHHHHHHHHHHHSCCEEE
T ss_pred cEEEEEEe------CcCCHHHHHHHHHHhCCcEEEE
Confidence 98876432 1223456667778888876543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-14 Score=125.28 Aligned_cols=110 Identities=10% Similarity=0.094 Sum_probs=87.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~ 178 (297)
.+.+++||+||||+|.++.+++++. ..+|++||+||.+++.|++++... ..+++++.+|+...... ..++||.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ-----THKVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC-----SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred ccCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhc-----ccccccccccccccccccccccccc
Confidence 3678899999999999999999864 478999999999999999987643 36788999998876644 4578999
Q ss_pred EEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+.|...... .. .++ ...++++. ++++|+|||+|++.
T Consensus 125 i~fD~~~~~~-~~-~~~~~~~~~~~~-~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 125 ILYDTYPLSE-ET-WHTHQFNFIKNH-AFRLLKPGGVLTYC 162 (229)
T ss_dssp EEECCCCCBG-GG-TTTHHHHHHHHT-HHHHEEEEEEEEEC
T ss_pred eeeccccccc-cc-ccccCHHHHHHH-HHHHcCCCcEEEEE
Confidence 9999874331 11 122 23458888 79999999999874
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.53 E-value=1.5e-13 Score=114.70 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=97.0
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+...+..+|||||||+|.++.++++. ..+|++||+||.+++.|++++...+ -.++++++.+|+.+.+.. .+.|
T Consensus 28 ~l~~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~g---l~~~v~~~~gda~~~~~~-~~~~ 101 (186)
T d1l3ia_ 28 LAEPGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHG---LGDNVTLMEGDAPEALCK-IPDI 101 (186)
T ss_dssp HHCCCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT---CCTTEEEEESCHHHHHTT-SCCE
T ss_pred hcCCCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcC---CCcceEEEECchhhcccc-cCCc
Confidence 344567889999999999999999875 4699999999999999999987553 136899999999887643 4789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~ 243 (297)
|+|+++.... . ..++++. +.++|+|||.+++... ..+....+...+++..-
T Consensus 102 D~v~~~~~~~-------~--~~~~~~~-~~~~LkpgG~lvi~~~------~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 102 DIAVVGGSGG-------E--LQEILRI-IKDKLKPGGRIIVTAI------LLETKFEAMECLRDLGF 152 (186)
T ss_dssp EEEEESCCTT-------C--HHHHHHH-HHHTEEEEEEEEEEEC------BHHHHHHHHHHHHHTTC
T ss_pred CEEEEeCccc-------c--chHHHHH-HHHHhCcCCEEEEEee------ccccHHHHHHHHHHcCC
Confidence 9999985421 1 3578888 7999999999988742 33445566666766543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=3.5e-13 Score=119.36 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=129.2
Q ss_pred eCCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHHh-cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEE
Q 022451 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132 (297)
Q Consensus 54 ~s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~-~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~V 132 (297)
.-|.|+|.-.... +|.-+.+|-.+.++.++ +|.++...+. ....+.+|||+|||+|+++..++...|..+|+++
T Consensus 64 g~PlqYI~G~~~F-~~~~~~v~~~VlIPRpe----TE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~av 138 (274)
T d2b3ta1 64 GEPIAHLTGVREF-WSLPLFVSPATLIPRPD----TECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAV 138 (274)
T ss_dssp TCCHHHHSCEEEE-TTEEEECCTTSCCCCTT----HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEE
T ss_pred CcChhhhcCcEEE-eeeEEEEeccccccccc----hhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeec
Confidence 3455565554433 36778888877777665 4555443332 2355778999999999999999987788999999
Q ss_pred ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCC-CCC----------CCCccCcc-----
Q 022451 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY----- 196 (297)
Q Consensus 133 Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~-~~~----------~~p~~~L~----- 196 (297)
|+++.+++.|+++....+ -.+++++.+|..+.+. +.+||+|++++|- +.. ..|...|+
T Consensus 139 Dis~~Al~~A~~Na~~~~----~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dG 212 (274)
T d2b3ta1 139 DRMPDAVSLAQRNAQHLA----IKNIHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSG 212 (274)
T ss_dssp CSSHHHHHHHHHHHHHHT----CCSEEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHH
T ss_pred cchhHHHhHHHHHHHHhC----cccceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhccccccc
Confidence 999999999999987553 2579999999877653 4689999999872 211 12322232
Q ss_pred ---cHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEEEEecCccCCceeEEEE
Q 022451 197 ---TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMV 264 (297)
Q Consensus 197 ---t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp~~~~~~~~~~a 264 (297)
-+.+++. +.+.|+|||.+++..+. .+. ..+.+.+.+. |..+..+. .+.+...+++|
T Consensus 213 l~~~~~i~~~-a~~~L~~~G~l~lEig~----~q~---~~v~~~l~~~gf~~i~~~k----Dl~g~~R~v~~ 272 (274)
T d2b3ta1 213 MADIVHIIEQ-SRNALVSGGFLLLEHGW----QQG---EAVRQAFILAGYHDVETCR----DYGDNERVTLG 272 (274)
T ss_dssp THHHHHHHHH-HGGGEEEEEEEEEECCS----SCH---HHHHHHHHHTTCTTCCEEE----CTTSSEEEEEE
T ss_pred chHHHHHHHH-HHHhcCCCCEEEEEECc----hHH---HHHHHHHHHCCCCeEEEEE----CCCCCceEEEE
Confidence 2346677 78999999999998642 233 3444555544 77765442 34445566665
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.51 E-value=2.2e-14 Score=125.65 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=100.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..++.+||++|||+|.++..+++. .+..+|+++|+++++++.|++++.... ...+++++.+|..+.+. +..||.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~---~~~nv~~~~~Di~~~~~--~~~fD~ 157 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY---DIGNVRTSRSDIADFIS--DQMYDA 157 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS---CCTTEEEECSCTTTCCC--SCCEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc---CCCceEEEEeeeecccc--cceeee
Confidence 467799999999999999999875 456799999999999999999986432 24789999999877653 467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEE
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY 248 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~ 248 (297)
|++|.++|+ ++++. +.+.|+|||++++.. | ..++..++...+++. |.....+
T Consensus 158 V~ld~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 158 VIADIPDPW-----------NHVQK-IASMMKPGSVATFYL--P----NFDQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp EEECCSCGG-----------GSHHH-HHHTEEEEEEEEEEE--S----SHHHHHHHHHHSGGGTEEEEEEE
T ss_pred eeecCCchH-----------HHHHH-HHHhcCCCceEEEEe--C----CcChHHHHHHHHHHCCCceeEEE
Confidence 999988765 45667 789999999999874 3 345677788888765 6554444
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.51 E-value=2.5e-14 Score=122.37 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=83.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|..+..+++.. .+|++||+|+.+++.|++.+... ..++++++++|+.+ +.-.+++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~----~~~~i~~~~~d~~~-l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN----GHQQVEYVQGDAEQ-MPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT----TCCSEEEEECCC-C-CCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc----cccccccccccccc-ccccccccccc
Confidence 3567899999999999999999873 68999999999999999987654 24789999999876 33346789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.+... -..++++ +.++|+|||++++..
T Consensus 86 ~~~~~l~~~~d------~~~~l~~-~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPN------PASFVSE-AYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred cccccccccCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 98754322111 2378899 799999999888753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=5.3e-14 Score=121.20 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=84.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||+|.++..+++.. .+|++||+++.+++.|+++..... .+++.++.+|+.+ +.-.+++||+
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~ 85 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKG----VENVRFQQGTAES-LPFPDDSFDI 85 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHT----CCSEEEEECBTTB-CCSCTTCEEE
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccc----ccccccccccccc-ccccccccce
Confidence 34678899999999999999999863 689999999999999999876542 3679999999876 3335678999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|++...-.+... -.++++. ++++|+|||.+++.
T Consensus 86 v~~~~~l~~~~d------~~~~l~~-~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 86 ITCRYAAHHFSD------VRKAVRE-VARVLKQDGRFLLV 118 (234)
T ss_dssp EEEESCGGGCSC------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred eeeeceeecccC------HHHHHHH-HHHeeCCCcEEEEE
Confidence 998755332111 2478999 79999999988775
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=6.2e-14 Score=123.62 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=102.6
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES 175 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
++...++.+||++|||+|.++..+++. .|..+|+++|+++++++.|++++..... ...++++++++|+.+. ...+..
T Consensus 91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-~~~~nv~~~~~d~~~~-~~~~~~ 168 (264)
T d1i9ga_ 91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS-ELPDGS 168 (264)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC-CCCTTC
T ss_pred HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc-CCCceEEEEecccccc-cccCCC
Confidence 344577899999999999999999985 5678999999999999999998763211 1236899999998653 224578
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh--CCceeEE
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV--FKYVVPY 248 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~--F~~v~~~ 248 (297)
||.|++|.++|| +++.. +++.|||||.+++.. | ..++.++++.+++.. |..+..+
T Consensus 169 fDaV~ldlp~P~-----------~~l~~-~~~~LkpGG~lv~~~--P----~i~Qv~~~~~~l~~~~~f~~i~~~ 225 (264)
T d1i9ga_ 169 VDRAVLDMLAPW-----------EVLDA-VSRLLVAGGVLMVYV--A----TVTQLSRIVEALRAKQCWTEPRAW 225 (264)
T ss_dssp EEEEEEESSCGG-----------GGHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred cceEEEecCCHH-----------HHHHH-HHhccCCCCEEEEEe--C----ccChHHHHHHHHHHcCCeecceEE
Confidence 999999998876 45667 799999999999874 3 446777888888633 6665543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=5.3e-14 Score=122.11 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=85.5
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++++|||||||+|.++..+++..+ .+|++||+|+.+++.|++.....+ -+++++++.+|+.+.. .+++||+
T Consensus 30 ~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~g---l~~~v~~~~~d~~~~~--~~~~fD~ 103 (245)
T d1nkva_ 30 RMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELG---VSERVHFIHNDAAGYV--ANEKCDV 103 (245)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEESCCTTCC--CSSCEEE
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhh---ccccchhhhhHHhhcc--ccCceeE
Confidence 346678999999999999999988654 689999999999999999865443 2468999999998863 4578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++-....+... -..++++ +++.|+|||.+++..
T Consensus 104 v~~~~~~~~~~d------~~~~l~~-~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 104 AACVGATWIAGG------FAGAEEL-LAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEEESCGGGTSS------SHHHHHH-HTTSEEEEEEEEEEE
T ss_pred EEEEehhhccCC------HHHHHHH-HHHHcCcCcEEEEEe
Confidence 987644222111 2478999 899999999998864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.48 E-value=4.8e-14 Score=114.35 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-++++|||+|||+|.++.+++.+ +..+|++||+|+.+++.+++++...+ -.++++++.+|+..++....++||+|+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~---~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTK---AENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTT---CGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcc---cccchhhhcccccccccccccccceeE
Confidence 46899999999999999998875 46799999999999999999987553 246799999999999988788999999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHH--cccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGvl~~~~ 219 (297)
+|||-. ... ....+.. + .+.|+|+|++++..
T Consensus 89 ~DPPy~------~~~-~~~~l~~-i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 89 LDPPYA------KET-IVATIEA-LAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ECCSSH------HHH-HHHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred echhhc------cch-HHHHHHH-HHHCCCcCCCeEEEEEe
Confidence 997521 111 1233343 2 36799999999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.46 E-value=3.5e-13 Score=114.49 Aligned_cols=128 Identities=10% Similarity=0.117 Sum_probs=101.0
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~ 181 (297)
..-||+||||+|..+..+++..|...+++||+++.++..|.+.....+ -.|++++.+|+...+.. .+..+|.|++
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~----l~Nv~~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE----AQNVKLLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC----CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh----ccCchhcccchhhhhcccCchhhhcccc
Confidence 346899999999999999988889999999999999999988766442 36899999999876643 4678999999
Q ss_pred cCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 182 D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
..++|+.... ...+++.+|++. +++.|+|||.|.+.+. .......+...+.+.
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~-~~r~LkpgG~l~i~TD------~~~y~~~~~~~~~~~ 160 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKK-YEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEY 160 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHH-HHHHHTTSCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcchhhhHHHHHHH-HHHhCCCCcEEEEEEC------ChHHHHHHHHHHHHC
Confidence 9888873221 236788999999 8999999999988753 334455555555543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.44 E-value=1.9e-13 Score=118.41 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=82.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+.+++|||||||+|.++..+++.. .+|++||+|+.|++.|++..... ..+++++.+|+..+- ..++||+
T Consensus 34 ~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~fD~ 104 (246)
T d1y8ca_ 34 NNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-----GLKPRLACQDISNLN--INRKFDL 104 (246)
T ss_dssp TTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECCCGGGCC--CSCCEEE
T ss_pred hCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc-----Cccceeeccchhhhc--ccccccc
Confidence 34668899999999999999999863 58999999999999999987644 257999999998752 3568999
Q ss_pred EEEcCC--CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLA--DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~--~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++-.. .... .+ . --..+++. ++++|+|||+|++..
T Consensus 105 i~~~~~~~~~~~-~~-~--~~~~~l~~-~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 105 ITCCLDSTNYII-DS-D--DLKKYFKA-VSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEECTTGGGGCC-SH-H--HHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred cceeeeeeeccC-CH-H--HHHHHHHH-HHHhCCCCeEEEEEe
Confidence 997421 1110 00 0 11358898 899999999999764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=4.9e-13 Score=117.25 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=89.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++++|||+|||+|.++..+++. ..+|++||+||.+++.|+++...++ -+++++.+|....+. .++||+|
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~-----~~~~~~~~d~~~~~~--~~~fD~V 188 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNG-----VRPRFLEGSLEAALP--FGPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTT-----CCCEEEESCHHHHGG--GCCEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcC-----CceeEEecccccccc--ccccchh
Confidence 467899999999999999988875 3689999999999999999987653 356889999877653 4689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
+.+...+ . -.++++. ++++|+|||.+++..- -......+.+.+++.
T Consensus 189 ~ani~~~-------~--l~~l~~~-~~~~LkpGG~lilSgi------l~~~~~~v~~~~~~~ 234 (254)
T d2nxca1 189 VANLYAE-------L--HAALAPR-YREALVPGGRALLTGI------LKDRAPLVREAMAGA 234 (254)
T ss_dssp EEECCHH-------H--HHHHHHH-HHHHEEEEEEEEEEEE------EGGGHHHHHHHHHHT
T ss_pred hhccccc-------c--HHHHHHH-HHHhcCCCcEEEEEec------chhhHHHHHHHHHHC
Confidence 9875421 1 2367788 7999999999987531 112345666666665
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.43 E-value=1.1e-12 Score=117.89 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=87.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~y 176 (297)
..++++||+++||+|+++..+++. .++|+.||+++.+++.|++++..++ +.+.+++++.+|+.++++. ..++|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~--~~~~~~~~i~~D~~~~l~~~~~~~~~f 205 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTY 205 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhc--ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence 457889999999999999999875 3589999999999999999988764 3456899999999999864 35789
Q ss_pred eEEEEcCCCCCCCCCccCc-----ccHHHHHHHHcccCCCCcEE-EEecCCC
Q 022451 177 DVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIF-VTQAGPA 222 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L-----~t~ef~~~~~~~~L~pgGvl-~~~~~~p 222 (297)
|+||+|+|.-.. ++.... +-..+.+. +.+.|+|||.+ +++++++
T Consensus 206 D~IilDPP~f~~-~~~~~~~~~~~~~~~l~~~-~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 206 DIILTDPPKFGR-GTHGEVWQLFDHLPLMLDI-CREILSPKALGLVLTAYSI 255 (309)
T ss_dssp SEEEECCCSEEE-CTTCCEEEHHHHHHHHHHH-HHHTBCTTCCEEEEEECCT
T ss_pred CEEEECCCcccc-cccchhHHHHHHHHHHHHH-HHHhcCCCCCEEEEecCCC
Confidence 999999983110 111111 12345556 68899999864 4444443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=2.5e-13 Score=117.43 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=81.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++++|||||||+|..+..+++. ..+|++||+++.|++.|++.+... ..+++++.+|+.++- .+++||+|
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~-----~~~i~~~~~d~~~l~--~~~~fD~I 109 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER-----NLKIEFLQGDVLEIA--FKNEFDAV 109 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEESCGGGCC--CCSCEEEE
T ss_pred CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccc-----cccchheehhhhhcc--cccccchH
Confidence 456789999999999999999986 358999999999999999987643 358999999987752 34689999
Q ss_pred EEcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-... ... .+ . -...+++. ++++|+|||++++..
T Consensus 110 ~~~~~~~~~~-~~-~--~~~~~L~~-~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 110 TMFFSTIMYF-DE-E--DLRKLFSK-VAEALKPGGVFITDF 145 (251)
T ss_dssp EECSSGGGGS-CH-H--HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred hhhhhhhhcC-Ch-H--HHHHHHHH-HHHHcCCCcEEEEEe
Confidence 985321 110 00 0 12368898 799999999998864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.42 E-value=1.5e-12 Score=117.66 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=90.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~y 176 (297)
..++++||+++||+|+++.+++.. +..+|++||+|+..++.|++++..++ ++..+++++.+|+.++++. ..++|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~--l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhc--ccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 356889999999999999988774 56789999999999999999998764 3446899999999999864 45789
Q ss_pred eEEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 177 DVIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+|++|+|.-.. .+ ..+. -.++++. +.+.|+|||+|++.++++
T Consensus 219 D~Ii~DPP~f~~-~~-~~~~~~~~~~~~L~~~-a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 219 DIIIIDPPSFAR-NK-KEVFSVSKDYHKLIRQ-GLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEECCCCC-------CCCCHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred CEEEEcChhhcc-ch-hHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCc
Confidence 999999983211 11 1111 1246666 678999999999888766
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=3.7e-12 Score=112.46 Aligned_cols=190 Identities=15% Similarity=0.193 Sum_probs=131.4
Q ss_pred CCCCcEEEEEeCCceeEEEEcCccccccCChhhHHHHHHHHHH--hcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEE
Q 022451 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132 (297)
Q Consensus 55 s~~~~i~V~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l--~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~V 132 (297)
-|.++|.-.... +|.-+++|..+.++.++. |.++...+ .......+||++|||+|.++..+++. +..+|+++
T Consensus 66 ~Pl~YI~g~~~F-~~~~f~v~~~vlIPRpeT----E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~ 139 (271)
T d1nv8a_ 66 YPLHYILGEKEF-MGLSFLVEEGVFVPRPET----EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFAT 139 (271)
T ss_dssp CCHHHHHTEEEE-TTEEEECCTTSCCCCTTH----HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEE
T ss_pred CChhhhcCcEEE-eeeEEEEecCccCchhhh----hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeec
Confidence 355666554444 468888898888887763 33332221 12234678999999999999988875 57899999
Q ss_pred ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC-CCCC--------CCCccCcc----cHH
Q 022451 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIE--------GGPCYKLY----TKS 199 (297)
Q Consensus 133 Eid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~-~~~~--------~~p~~~L~----t~e 199 (297)
|+|+..+++|+++...++ -..++.++.+|..+.+....++||+|++++| -+.. ..|...|+ ..+
T Consensus 140 Dis~~Al~~A~~Na~~~~---~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~ 216 (271)
T d1nv8a_ 140 DVSSKAVEIARKNAERHG---VSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLD 216 (271)
T ss_dssp ESCHHHHHHHHHHHHHTT---CTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCH
T ss_pred hhhhhHHHHHHHHHHHcC---CCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHH
Confidence 999999999999987553 2468899999988877666679999999997 1110 11211111 136
Q ss_pred HHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccCCceeEEEEecCC
Q 022451 200 FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMVSIYN 268 (297)
Q Consensus 200 f~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~~~~~~~~as~~~ 268 (297)
|++.++++.|+|||++++..+. .+. ..+++.|..+.. ...+.+...++++.|+.
T Consensus 217 ~~r~i~~~~L~~~G~l~~Eig~----~Q~-------~~v~~l~~~~g~----~kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 217 FYREFFGRYDTSGKIVLMEIGE----DQV-------EELKKIVSDTVF----LKDSAGKYRFLLLNRRS 270 (271)
T ss_dssp HHHHHHHHCCCTTCEEEEECCT----TCH-------HHHTTTSTTCEE----EECTTSSEEEEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEEECH----HHH-------HHHHHHHHhCCE----EeccCCCcEEEEEEEcC
Confidence 7777678999999999998752 222 334566666543 24566668888888764
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=6.9e-12 Score=113.53 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
.++++||++|||+|+.+..+++. +..+|++||+++.+++.|++++..++. .++++++.+|+.+++.. .+++||
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl---~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGV---EDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC---GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCC---CccceeeechhhhhhHHHHhccCCCC
Confidence 56789999999999999999876 467999999999999999999887642 35899999999988643 467899
Q ss_pred EEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|++.... .. .... -.+++.. +.++|+|||+|+..++++
T Consensus 220 ~Vi~DpP~~~~-~~-~~~~~~~~~y~~l~~~-a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 220 IVVLDPPAFVQ-HE-KDLKAGLRAYFNVNFA-GLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp EEEECCCCSCS-SG-GGHHHHHHHHHHHHHH-HHTTEEEEEEEEEEECCT
T ss_pred chhcCCccccC-CH-HHHHHHHHHHHHHHHH-HHHHcCCCcEEEEEeCCc
Confidence 99999974221 11 1111 1346666 679999999999887665
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=2.8e-13 Score=119.61 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=100.7
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES 175 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
++...++.+|||+|||+|+++..+++. .+..+|+++|+++++++.|++++...+ ...++.+..+|....+ ....
T Consensus 98 ~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g---~~~~v~~~~~d~~~~~--~~~~ 172 (266)
T d1o54a_ 98 MLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG---LIERVTIKVRDISEGF--DEKD 172 (266)
T ss_dssp HTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT---CGGGEEEECCCGGGCC--SCCS
T ss_pred hhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc---cccCcEEEeccccccc--cccc
Confidence 344578899999999999999999875 456799999999999999999987542 2468999999964432 3467
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh-CCceeEE
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY 248 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~-F~~v~~~ 248 (297)
||.|++|.++|+ ++++. +.++|||||.+++.+ | ..+++.++...+++. |..+..+
T Consensus 173 ~D~V~~d~p~p~-----------~~l~~-~~~~LKpGG~lv~~~--P----~~~Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 173 VDALFLDVPDPW-----------NYIDK-CWEALKGGGRFATVC--P----TTNQVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp EEEEEECCSCGG-----------GTHHH-HHHHEEEEEEEEEEE--S----SHHHHHHHHHHHHHSSEEEEEEE
T ss_pred eeeeEecCCCHH-----------HHHHH-HHhhcCCCCEEEEEe--C----cccHHHHHHHHHHHCCceeEEEE
Confidence 999999998765 45677 799999999999874 3 346677888888765 6544433
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.2e-12 Score=110.63 Aligned_cols=105 Identities=20% Similarity=0.335 Sum_probs=86.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~ 174 (297)
..+++||+||+|+|..+..+++. .+..+|+++|+|++..+.|++++...+ -.++++++.+|+.+.+.. ...
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag---~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE---AEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT---CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC---ccceEEEEEeehhhcchhhhhhcccC
Confidence 57899999999999999999875 346899999999999999999997543 247899999999887753 256
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|.... ...++|+. +.+.|+|||++++.
T Consensus 135 ~fD~ifiD~dk~---------~y~~~~~~-~~~lL~~GGvii~D 168 (219)
T d2avda1 135 TFDVAVVDADKE---------NCSAYYER-CLQLLRPGGILAVL 168 (219)
T ss_dssp CEEEEEECSCST---------THHHHHHH-HHHHEEEEEEEEEE
T ss_pred CccEEEEeCCHH---------HHHHHHHH-HHHHhcCCcEEEEe
Confidence 899999996421 12478888 78999999999876
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.6e-13 Score=120.28 Aligned_cols=127 Identities=12% Similarity=0.219 Sum_probs=95.3
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhcc-------CCCCCCCeEEEEcchHHH
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNK-------EAFSDPRLELVINDARAE 168 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~-------~~~~~~rv~~~~~Da~~~ 168 (297)
++...++.+||++|||+|+++..+++. .+..+|+++|+++++++.|++++.... ..-...++.++++|...+
T Consensus 93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 344578899999999999999999975 467899999999999999999875210 011246899999998665
Q ss_pred Hhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 169 LES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 169 l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
... ....||.|++|.++|| +.+.. +.+.|+|||+|++.. | .-+++.+++..|++.
T Consensus 173 ~~~~~~~~fD~V~LD~p~P~-----------~~l~~-~~~~LKpGG~lv~~~--P----~i~Qv~~~~~~l~~~ 228 (324)
T d2b25a1 173 TEDIKSLTFDAVALDMLNPH-----------VTLPV-FYPHLKHGGVCAVYV--V----NITQVIELLDGIRTC 228 (324)
T ss_dssp C-------EEEEEECSSSTT-----------TTHHH-HGGGEEEEEEEEEEE--S----SHHHHHHHHHHHHHH
T ss_pred ccccCCCCcceEeecCcCHH-----------HHHHH-HHHhccCCCEEEEEe--C----CHHHHHHHHHHHHHc
Confidence 432 3467999999998877 34566 799999999999874 3 345677788888754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=6.1e-13 Score=112.65 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=82.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.++..+|||||||+|.++..+++. ..+|+++|+|+.+++.|++.+... ..++.++.+|+.+. ...++.||+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~-----~~~~~~~~~d~~~l-~~~~~~fD~I 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSR-----ESNVEFIVGDARKL-SFEDKTFDYV 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCCEEEECCTTSC-CSCTTCEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccc-----cccccccccccccc-cccCcCceEE
Confidence 366789999999999999999985 468999999999999999987543 25678899998773 4456889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-.+ .+... -..+++. +.++|+|||.+++..
T Consensus 107 ~~~~~l~~--~~~~d--~~~~l~~-i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 107 IFIDSIVH--FEPLE--LNQVFKE-VRRVLKPSGKFIMYF 141 (226)
T ss_dssp EEESCGGG--CCHHH--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEecchhh--CChhH--HHHHHHH-HHHHcCcCcEEEEEE
Confidence 98743221 11001 2357888 799999999998764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=2e-12 Score=116.84 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=88.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
..+++||++|||+|+.+.++++. ..+|++||+|+.+++.|++++..++ -.+++++.+|+.++++. ..++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ng----l~~~~~i~~d~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG----LGNVRVLEANAFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcC----CCCcceeeccHHHHhhhhHhhhcCCC
Confidence 46889999999999999988763 5799999999999999999988764 24799999999988643 467899
Q ss_pred EEEEcCCCCCCCCCccCcc-----cHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 178 VIIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
+|++|++.-.. .. ..+. -.+++.. +.+.|+|||+|+..++++
T Consensus 218 ~Vi~DpP~~~~-~~-~~~~~~~~~~~~l~~~-a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 218 LVVLDPPAFAK-GK-KDVERAYRAYKEVNLR-AIKLLKEGGILATASCSH 264 (318)
T ss_dssp EEEECCCCSCC-ST-TSHHHHHHHHHHHHHH-HHHTEEEEEEEEEEECCT
T ss_pred EEEEcCCcccc-ch-HHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEeCCc
Confidence 99999974221 11 1221 1245666 678999999999887765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.39 E-value=6.2e-13 Score=113.76 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=83.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
.++..+|||||||+|..+..++++ .+..+|++||+++.|++.|++...... ...++++..+|...+ ...++|
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~d 110 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHV---EIKNAS 110 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC---CSSCEEEECSCTTTC---CCCSEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc---ccchhhhccchhhcc---ccccce
Confidence 467789999999999999999875 357799999999999999999876432 346788899987654 446799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|++...-++ .+.. -...+++. +++.|+|||.+++.
T Consensus 111 ~i~~~~~l~~--~~~~--d~~~~l~~-i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 111 MVILNFTLQF--LPPE--DRIALLTK-IYEGLNPNGVLVLS 146 (225)
T ss_dssp EEEEESCGGG--SCGG--GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred eeEEeeeccc--cChh--hHHHHHHH-HHHhCCCCceeecc
Confidence 9988755332 1101 12378999 89999999999875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.38 E-value=2.6e-12 Score=108.99 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=100.2
Q ss_pred CCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEE
Q 022451 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~ 181 (297)
..-||+||||+|..+.++++..|...+++||+++.++..|.+..... +-++++++.+|+..++.. ....+|.|++
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~----~l~Ni~~~~~da~~l~~~~~~~~~~~i~i 107 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV----GVPNIKLLWVDGSDLTDYFEDGEIDRLYL 107 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH----CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh----ccccceeeecCHHHHhhhccCCceehhcc
Confidence 34699999999999999998878899999999999999988876543 236899999999876543 3578999999
Q ss_pred cCCCCCCCCC--ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 182 DLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 182 D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.-++||.... ...+.+.+|++. +.++|+|||.|.+.+. .......+...+.+.
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~-~~~~LkpgG~l~i~TD------~~~Y~~~~le~~~~~ 162 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDT-FKRILPENGEIHFKTD------NRGLFEYSLVSFSQY 162 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHH-HHHHSCTTCEEEEEES------CHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhHHHHHHH-HHHhCCCCcEEEEEEC------CccHHHHHHHHHHHC
Confidence 9999983211 236788999999 8999999999988753 334455555555544
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.37 E-value=3.9e-13 Score=119.01 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=84.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||||||+|.++..+++.+ ..+|++||+++.+++.|+++....+ -.++++++.+|+.+. ...+++||+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g---l~~~v~~~~~d~~~l-~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG---LADNITVKYGSFLEI-PCEDNSYDFI 139 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT---CTTTEEEEECCTTSC-SSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc---ccccccccccccccc-cccccccchh
Confidence 4677899999999999999998864 4689999999999999999876432 236899999998764 3345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.-.-.. .+ . -..+++. +.++|+|||.+++..
T Consensus 140 ~~~~~l~h--~~--d--~~~~l~~-~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 140 WSQDAFLH--SP--D--KLKVFQE-CARVLKPRGVMAITD 172 (282)
T ss_dssp EEESCGGG--CS--C--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred hccchhhh--cc--C--HHHHHHH-HHHhcCCCcEEEEEE
Confidence 88643211 11 1 2368898 899999999998864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.5e-12 Score=108.55 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=85.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
...+|||++||+|.++.+++.+ +..+|+.||+|+.+++.+++++.... ..+.+++.+|+..++....++||+|++
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~----~~~~~ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLK----AGNARVVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT----CCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhcc----ccceeeeeecccccccccccccCEEEE
Confidence 5679999999999999999986 46799999999999999999987542 357899999999999887889999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHc--ccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGvl~~~~ 219 (297)
|+|-.. .++ .+.+.. +. ..|+++|++++..
T Consensus 118 DPPY~~------~~~-~~~l~~-l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 118 DPPFRR------GLL-EETINL-LEDNGWLADEALIYVES 149 (183)
T ss_dssp CCSSST------TTH-HHHHHH-HHHTTCEEEEEEEEEEE
T ss_pred cCcccc------chH-HHHHHH-HHHCCCCCCCeEEEEEe
Confidence 986211 122 244454 33 5799999999874
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.3e-13 Score=113.17 Aligned_cols=108 Identities=22% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|||||||+|..+..+++.. ..+|++||+++.+++.||+.+.... .++++++++|+.++- ...++||+|+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~----~~~~~f~~~d~~~~~-~~~~~fD~I~ 132 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG----KRVRNYFCCGLQDFT-PEPDSYDVIW 132 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG----GGEEEEEECCGGGCC-CCSSCEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc----ccccccccccccccc-cccccccccc
Confidence 456899999999999999987654 4689999999999999999876542 357899999998753 3467899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .+... -.++++. +++.|+|||.+++..
T Consensus 133 ~~~~l~h--~~~~~--~~~~l~~-i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 133 IQWVIGH--LTDQH--LAEFLRR-CKGSLRPNGIIVIKD 166 (222)
T ss_dssp EESCGGG--SCHHH--HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccccccc--chhhh--hhhHHHH-HHHhcCCcceEEEEE
Confidence 8754211 11000 1368898 799999999998763
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.35 E-value=3.7e-13 Score=117.34 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=82.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++++|||||||+|..+..+++. +..+|++||+|+.+++.|++...... ...++.++.+|+........++||+|
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcchhhhcccccccceEE
Confidence 467789999999999998888875 35789999999999999998765332 24689999999854332345789999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++...-+..-.+ .-.-..+++. +.++|+|||++++.+
T Consensus 98 ~~~~~l~~~~~~--~~~~~~~l~~-i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 98 SSQFSFHYAFST--SESLDIAQRN-IARHLRPGGYFIMTV 134 (252)
T ss_dssp EEESCGGGGGSS--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEcceeeecCCC--HHHHHHHHHH-HhceeCCCCEEEEEe
Confidence 987542210001 0011358888 799999999998764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.34 E-value=5.7e-12 Score=107.22 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=99.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD 177 (297)
.+++.+||+||||+|..+..+++..+..+|++||++|.+++.|++..... +++.++.+|+...-.. ....+|
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~------~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc------CCceEEEeeccCccccccccceEE
Confidence 35678999999999999999998777789999999999999998875432 5899999998753222 235688
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec-----CCCCCcCCchHHHHHHHHHHhhCCceeEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-----GPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~-----~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
+|+.|...+. ....+++. +.+.|+|||.+++.. .++ ......++...+.+.+.|.-+.. ..+
T Consensus 128 ~v~~~~~~~~--------~~~~~l~~-~~~~LkpgG~l~i~~~~~~~d~~--~~~~~~~~~~~~~l~~gf~i~E~--i~L 194 (209)
T d1nt2a_ 128 LIYQDIAQKN--------QIEILKAN-AEFFLKEKGEVVIMVKARSIDST--AEPEEVFKSVLKEMEGDFKIVKH--GSL 194 (209)
T ss_dssp EEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHHCTT--SCHHHHHHHHHHHHHTTSEEEEE--EEC
T ss_pred EEEecccChh--------hHHHHHHH-HHHHhccCCeEEEEEEccccCCC--CCHHHHHHHHHHHHHcCCEEEEE--Ecc
Confidence 8888865432 13478888 799999999987753 111 11234555666667666765432 345
Q ss_pred CccCCce
Q 022451 253 PSFADTW 259 (297)
Q Consensus 253 p~~~~~~ 259 (297)
+.|....
T Consensus 195 ~P~~~~H 201 (209)
T d1nt2a_ 195 MPYHRDH 201 (209)
T ss_dssp TTTCTTE
T ss_pred CCCccCc
Confidence 5564333
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.33 E-value=1.5e-12 Score=109.18 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=82.7
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|..+..+++. ..+|++||+++.+++.|++.....+ -+++++...|..... .+++||+|+
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~I~ 100 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEG----LDNLQTDLVDLNTLT--FDGEYDFIL 100 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT----CTTEEEEECCTTTCC--CCCCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcc----ccchhhhheeccccc--ccccccEEE
Confidence 46789999999999999999986 3689999999999999998876442 367999999976653 357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-.. .|. -.-..+++. +.++|+|||++++..
T Consensus 101 ~~~~~~~--~~~--~~~~~~l~~-~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 101 STVVMMF--LEA--QTIPGLIAN-MQRCTKPGGYNLIVA 134 (198)
T ss_dssp EESCGGG--SCT--THHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred Eeeeeec--CCH--HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 8765322 221 112368888 799999999988764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.32 E-value=1.7e-12 Score=115.14 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=83.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+|.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++... ..+++++.+|+.+. . ..++||+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-----~~~~~f~~~d~~~~-~-~~~~fD~ 97 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-----PYDSEFLEGDATEI-E-LNDKYDI 97 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-----SSEEEEEESCTTTC-C-CSSCEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-----cccccccccccccc-c-ccCCceE
Confidence 36789999999999999999998654 468999999999999999987643 24689999998653 2 2467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++...-++...| ..+++. +.++|+|||.+++..
T Consensus 98 v~~~~~l~~~~d~------~~~l~~-~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 98 AICHAFLLHMTTP------ETMLQK-MIHSVKKGGKIICFE 131 (281)
T ss_dssp EEEESCGGGCSSH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEEehhhhcCCCH------HHHHHH-HHHHcCcCcEEEEEE
Confidence 9988653321122 368888 899999999988754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.32 E-value=5.1e-12 Score=105.27 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 89 ~e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
.|++... +....++++|||++||+|+++.+++.+ +..+|+.||.|+.+++.+++++...+ ...+++++.+|+..+
T Consensus 29 realFn~-l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~---~~~~~~i~~~D~~~~ 103 (182)
T d2fhpa1 29 KESIFNM-IGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITK---EPEKFEVRKMDANRA 103 (182)
T ss_dssp HHHHHHH-HCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHH
T ss_pred HHHHHHH-HHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhh---cccccccccccchhh
Confidence 4555431 222346899999999999999999986 47899999999999999999987543 235899999999998
Q ss_pred Hhc---cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEec
Q 022451 169 LES---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (297)
Q Consensus 169 l~~---~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~ 219 (297)
++. ...+||+|++|||-. ...+ .+.+..+. ...|+++|++++..
T Consensus 104 l~~~~~~~~~fDlIflDPPY~------~~~~-~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 104 LEQFYEEKLQFDLVLLDPPYA------KQEI-VSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHTTCCEEEEEECCCGG------GCCH-HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhcccCCCcceEEechhhh------hhHH-HHHHHHHHHCCCCCCCEEEEEEc
Confidence 864 456899999998621 1222 24455522 35799999999875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.31 E-value=6.8e-13 Score=116.18 Aligned_cols=102 Identities=16% Similarity=0.245 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
....+|||+|||+|.++..++... ..+|++||+++.+++.||+.+.. .++++++++|+.++- ..+++||+|+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~------~~~~~~~~~d~~~~~-~~~~~fD~I~ 163 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG------MPVGKFILASMETAT-LPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT------SSEEEEEESCGGGCC-CCSSCEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc------cccceeEEccccccc-cCCCccceEE
Confidence 467899999999999999887643 35899999999999999998652 367899999987653 2357899999
Q ss_pred EcCCCCCCCCCccCccc---HHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+...-. ++-. .++++. +++.|+|||.+++.
T Consensus 164 ~~~vl~-------hl~d~d~~~~l~~-~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 164 IQWTAI-------YLTDADFVKFFKH-CQQALTPNGYIFFK 196 (254)
T ss_dssp EESCGG-------GSCHHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred eecccc-------ccchhhhHHHHHH-HHHhcCCCcEEEEE
Confidence 876422 2222 378999 79999999999885
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.31 E-value=5e-12 Score=108.89 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=87.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc------cC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES------RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~------~~ 173 (297)
.+|++||+||+++|..+..+++. ++..+|+.+|+|++..+.|+++|...+ -.++++++.+|+.+.+.. ..
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g---~~~~i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG---VDHKIDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT---CGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc---cccceeeeehHHHHHHHHHHhccccC
Confidence 47899999999999999999864 456899999999999999999997543 246999999999998865 24
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
++||+||+|.... ...++|+. +.+.|+|||++++-
T Consensus 135 ~~fD~iFiDa~k~---------~y~~~~e~-~~~ll~~gGiii~D 169 (227)
T d1susa1 135 GSYDFIFVDADKD---------NYLNYHKR-LIDLVKVGGVIGYD 169 (227)
T ss_dssp TCBSEEEECSCST---------THHHHHHH-HHHHBCTTCCEEEE
T ss_pred CceeEEEeccchh---------hhHHHHHH-HHhhcCCCcEEEEc
Confidence 6899999996421 13488898 78999999999876
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.3e-12 Score=111.92 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+++.+|||+|||+|..+..+++. ..+|++||+++.+++.|+++.. + .++.+|+.+ +...+++||+|
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~--------~--~~~~~~~~~-l~~~~~~fD~i 106 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV--------K--NVVEAKAED-LPFPSGAFEAV 106 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC--------S--CEEECCTTS-CCSCTTCEEEE
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc--------c--ccccccccc-cccccccccce
Confidence 457789999999999999999985 4689999999999999998631 1 256788766 33446889999
Q ss_pred EEcC-CCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-. ...+... ..++++. +.+.|+|||++++.+
T Consensus 107 i~~~~~~~~~~d------~~~~l~~-i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 107 LALGDVLSYVEN------KDKAFSE-IRRVLVPDGLLIATV 140 (246)
T ss_dssp EECSSHHHHCSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred eeecchhhhhhh------HHHHHHH-HHhhcCcCcEEEEEE
Confidence 8743 2111111 2368888 799999999999875
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=1.4e-11 Score=106.27 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=102.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC--ce
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~--yD 177 (297)
..++.+||+||||+|.++..+++..+..+|++||++|.+++.+++... ..+++..+.+|++......... +|
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~------~~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA------ERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT------TCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh------hhcccceEEEeeccCcccccccceeE
Confidence 356789999999999999999998777899999999999999987643 2478888999987765443333 45
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC--CCCC-cCCchHHHHHHHHHHhh-CCceeEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGI-FSHTEVFSCIYNTLRQV-FKYVVPYSAHIP 253 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~--~p~~-~~~~~~~~~i~~~l~~~-F~~v~~~~~~vp 253 (297)
+|+.+...+. . ...++.. +++.|+|||.+++... +... ......++.+.+.|++. |..+.. ..+.
T Consensus 146 ~i~~~~~~~~--~------~~~~l~~-~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~--idL~ 214 (230)
T d1g8sa_ 146 VIYEDVAQPN--Q------AEILIKN-AKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE--VDIE 214 (230)
T ss_dssp EEEECCCSTT--H------HHHHHHH-HHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE--EECT
T ss_pred EeeccccchH--H------HHHHHHH-HHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE--ecCC
Confidence 5666654321 1 2467888 7999999998877531 1110 11234566677777765 654432 3455
Q ss_pred ccCCceeEEEEecC
Q 022451 254 SFADTWGWIMVSIY 267 (297)
Q Consensus 254 ~~~~~~~~~~as~~ 267 (297)
.|......+++.-+
T Consensus 215 py~~~H~~vvg~y~ 228 (230)
T d1g8sa_ 215 PFEKDHVMFVGIWE 228 (230)
T ss_dssp TTSTTEEEEEEEEC
T ss_pred CCcCCeEEEEEEec
Confidence 56544555655543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=1.8e-11 Score=100.79 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=75.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh---ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE---SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~---~~~~~y 176 (297)
.+.+.+|||+|||+|.++.+++... .++++||+|+.+++.+++++...+ -..+++..|+..++. ...++|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTG-----LGARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHT-----CCCEEECSCHHHHHHHHHHTTCCE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhc-----cccceeeeehhcccccccccCCcc
Confidence 3678899999999999999988863 579999999999999999987653 122455566655542 345789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~ 219 (297)
|+|++|+|-.. .+ . +.+..++ ...|+|||++++..
T Consensus 112 D~If~DPPY~~------~~-~-~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 112 TVAFMAPPYAM------DL-A-ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEECCCTTS------CT-T-HHHHHHHHHTCEEEEEEEEEEE
T ss_pred ceeEEcccccc------CH-H-HHHHHHHHcCCcCCCeEEEEEe
Confidence 99999986321 11 1 2223212 36899999999875
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.28 E-value=3.7e-12 Score=111.94 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++.+|||+|||+|.++..+++. +.++|++||+||..++.++++...++. .++++++.+|++++.. ...||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l---~~~v~~~~~D~~~~~~--~~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKV---EDRMSAYNMDNRDFPG--ENIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTC---TTTEEEECSCTTTCCC--CSCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCC---CceEEEEEcchHHhcc--CCCCCEEE
Confidence 57899999999999999999986 457999999999999999999887642 4689999999998764 46799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++++.. +.+|+.. +.+.|++||++.+..
T Consensus 180 ~~~p~~----------~~~~l~~-a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 180 MGYVVR----------THEFIPK-ALSIAKDGAIIHYHN 207 (260)
T ss_dssp ECCCSS----------GGGGHHH-HHHHEEEEEEEEEEE
T ss_pred ECCCCc----------hHHHHHH-HHhhcCCCCEEEEEe
Confidence 986521 2366777 678999999987654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=9.4e-12 Score=110.43 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=83.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||.|+++..+++..+ .+|++|++|+..++.|++.....+ ...++.+...|.+++ +++||.|
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~---l~~~~~~~~~d~~~~----~~~fD~i 121 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASID---TNRSRQVLLQGWEDF----AEPVDRI 121 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSC---CSSCEEEEESCGGGC----CCCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhc---cccchhhhhhhhhhh----ccchhhh
Confidence 46789999999999999999988754 699999999999999999875432 236788888886543 5789999
Q ss_pred EEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++--. .+. + .-.-..||+. +++.|||||.+++++
T Consensus 122 ~si~~~eh~---~--~~~~~~~f~~-i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 122 VSIEAFEHF---G--HENYDDFFKR-CFNIMPADGRMTVQS 156 (280)
T ss_dssp EEESCGGGT---C--GGGHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred hHhhHHHHh---h--hhhHHHHHHH-HHhccCCCceEEEEE
Confidence 87643 222 1 1122579999 799999999999885
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.26 E-value=4.6e-12 Score=108.36 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=77.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
..+++|||||||+|.++..+.+. ..+|++||+++++++.|++.+. .+++++.+|+..+. .+++||+|+
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~--~~~~fD~I~ 86 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQ--LPRRYDNIV 86 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCC--CSSCEEEEE
T ss_pred CCCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc--------cccccccccccccc--ccccccccc
Confidence 46789999999999999998875 3579999999999999998642 46899999987653 357899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHc-ccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVK-PRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~-~~L~pgGvl~~~~ 219 (297)
+...-.+... ...+++. ++ ++|+|||.+++.+
T Consensus 87 ~~~vleh~~d------~~~~l~~-i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 87 LTHVLEHIDD------PVALLKR-INDDWLAEGGRLFLVC 119 (225)
T ss_dssp EESCGGGCSS------HHHHHHH-HHHTTEEEEEEEEEEE
T ss_pred ccceeEecCC------HHHHHHH-HHHHhcCCCceEEEEe
Confidence 8644221111 2467777 66 7899999998864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=4.3e-12 Score=111.72 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=78.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..++.+|||||||+|..+..+++..+..++++||+++.+++.|++. .++++++++|+.+. .-.++.||+|
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~---------~~~~~~~~~d~~~l-~~~~~sfD~v 151 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR---------YPQVTFCVASSHRL-PFSDTSMDAI 151 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH---------CTTSEEEECCTTSC-SBCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc---------cccccceeeehhhc-cCCCCCEEEE
Confidence 4678899999999999999999887778999999999999999875 26799999998763 3456889999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++... |. .+++ +.+.|||||.+++.+
T Consensus 152 ~~~~~------~~-------~~~e-~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 152 IRIYA------PC-------KAEE-LARVVKPGGWVITAT 177 (268)
T ss_dssp EEESC------CC-------CHHH-HHHHEEEEEEEEEEE
T ss_pred eecCC------HH-------HHHH-HHHHhCCCcEEEEEe
Confidence 97532 21 1456 689999999999876
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1e-11 Score=105.86 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=80.6
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+||+||||+|..+..+++. .+..+|+++|+++.+++.|++++.... -.++.++++|+.+.+.. .++||
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~----~~n~~~~~~d~~~~~~~-~~~fD 146 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG----IENVIFVCGDGYYGVPE-FSPYD 146 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEE
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc----ccccccccCchHHcccc-ccchh
Confidence 4567889999999999999988875 356799999999999999999987542 36889999998765443 46799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+++..-+. .| +. +.+.|+|||.|++-.
T Consensus 147 ~I~~~~~~~~--~p----------~~-l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 147 VIFVTVGVDE--VP----------ET-WFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEECSBBSC--CC----------HH-HHHHEEEEEEEEEEB
T ss_pred hhhhhccHHH--hH----------HH-HHHhcCCCcEEEEEE
Confidence 9999864322 22 23 467899999998854
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.25 E-value=1.7e-12 Score=107.30 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=82.9
Q ss_pred HHhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC--------CCCCCCeEEEEcchHH
Q 022451 96 ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE--------AFSDPRLELVINDARA 167 (297)
Q Consensus 96 ~l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~--------~~~~~rv~~~~~Da~~ 167 (297)
+.+..+++.+|||+|||+|..+..++++ ..+|++||+++.+++.|++....... .......+++.+|..+
T Consensus 14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HHcCCCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 4445678899999999999999999986 46899999999999999997542110 0123556788888765
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.-......||+|+....-.. .+ .-....+++. +.+.|||||.+++..
T Consensus 92 l~~~~~~~~D~i~~~~~l~~--l~--~~~~~~~~~~-i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRAAMIA--LP--ADMRERYVQH-LEALMPQACSGLLIT 138 (201)
T ss_dssp STHHHHHSEEEEEEESCGGG--SC--HHHHHHHHHH-HHHHSCSEEEEEEEE
T ss_pred cccccccceeEEEEEeeeEe--cc--hhhhHHHHHH-HHHhcCCCcEEEEEE
Confidence 43333467999988654221 11 0112467788 799999999876653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.24 E-value=1.2e-11 Score=106.22 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=78.8
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+||+||||+|.++..+++. ..+|+++|+++.+++.|++++.. ..+++++.+|+...... ..+||+
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~------~~nv~~~~~d~~~g~~~-~~pfD~ 137 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSY------YNNIKLILGDGTLGYEE-EKPYDR 137 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT------CSSEEEEESCGGGCCGG-GCCEEE
T ss_pred hhcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhc------ccccccccCchhhcchh-hhhHHH
Confidence 3467889999999999999888876 47899999999999999987653 36899999998765443 467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++...-+. .| +. +.++|+|||+|++-.+
T Consensus 138 Iiv~~a~~~--ip----------~~-l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 138 VVVWATAPT--LL----------CK-PYEQLKEGGIMILPIG 166 (224)
T ss_dssp EEESSBBSS--CC----------HH-HHHTEEEEEEEEEEEC
T ss_pred HHhhcchhh--hh----------HH-HHHhcCCCCEEEEEEc
Confidence 999865322 22 22 4578999999988654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=5.9e-11 Score=102.04 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=101.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--ccCCCc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~--~~~~~y 176 (297)
..++.+||+||||+|.++..+++. .+..+|++||++|.+++.+++.... .+++..+..|++..-. .....+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~------~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE------RRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS------CTTEEEEECCTTCGGGGTTTCCCE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh------cCCceEEEEECCCcccccccccce
Confidence 356789999999999999999986 4568999999999999999987542 2567888888754322 234679
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec--CCCCCcCCc-hHHHHHHHHHHhhCCceeEEEEecC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGIFSHT-EVFSCIYNTLRQVFKYVVPYSAHIP 253 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~--~~p~~~~~~-~~~~~i~~~l~~~F~~v~~~~~~vp 253 (297)
|+|++|.+.+. ....+++. +++.|+|||.+++.. .+....... ..++.+...+++.|.-+.. ..+.
T Consensus 145 D~i~~d~~~~~--------~~~~~l~~-~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~--i~L~ 213 (227)
T d1g8aa_ 145 DVIFEDVAQPT--------QAKILIDN-AEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER--LNLE 213 (227)
T ss_dssp EEEEECCCSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE--EECT
T ss_pred EEEEEEccccc--------hHHHHHHH-HHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE--EcCC
Confidence 99999986542 13468888 799999999887753 211111222 2334444445555654432 3455
Q ss_pred ccCCceeEEEEec
Q 022451 254 SFADTWGWIMVSI 266 (297)
Q Consensus 254 ~~~~~~~~~~as~ 266 (297)
.|......++|.|
T Consensus 214 p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 214 PYEKDHALFVVRK 226 (227)
T ss_dssp TTSSSEEEEEEEC
T ss_pred CCCCceEEEEEEe
Confidence 5654455555654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=2.7e-11 Score=105.52 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=82.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|||||||+|.++..+++..|..+++++|+ |.+++.+++++...+ ..+|++++.+|.++. ....||+|+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~---~~~rv~~~~~D~~~~---~~~~~D~v~ 151 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG---LSDRVDVVEGDFFEP---LPRKADAII 151 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh---cccchhhccccchhh---cccchhhee
Confidence 5678999999999999999999888889999998 789999999876543 247899999997543 346799999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. -+ .-....+++. ++++|+|||.+++..
T Consensus 152 ~~~vlh~--~~--d~~~~~~L~~-~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 152 LSFVLLN--WP--DHDAVRILTR-CAEALEPGGRILIHE 185 (253)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ecccccc--CC--chhhHHHHHH-HHHhcCCCcEEEEEe
Confidence 7654221 11 0112367888 799999999888753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=3.6e-11 Score=107.19 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=84.1
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||.|+++.++++..+ .+|++|++++..++.|++.....+ ...++++...|.+ ..+++||.
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~---l~~~v~~~~~d~~----~~~~~fD~ 129 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD---SPRRKEVRIQGWE----EFDEPVDR 129 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSC---CSSCEEEEECCGG----GCCCCCSE
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhc---cchhhhhhhhccc----ccccccce
Confidence 356789999999999999999987654 699999999999999999876432 2468999999964 23578999
Q ss_pred EEEcCC-CCCCCCC-cc-CcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLA-DPIEGGP-CY-KLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~-~~~~~~p-~~-~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++--. .+..... .. .-.-+.||+. +.+.|+|||.+++++
T Consensus 130 i~sie~~eH~~~~~~~~~~~~~~~~f~~-i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 130 IVSLGAFEHFADGAGDAGFERYDTFFKK-FYNLTPDDGRMLLHT 172 (291)
T ss_dssp EEEESCGGGTTCCSSCCSTTHHHHHHHH-HHHTSCTTCEEEEEE
T ss_pred EeechhHHhcchhhhhhHHHHHHHHHHH-HHHhCCCCCceEEEE
Confidence 987543 3321000 00 1123579999 799999999999885
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.1e-11 Score=106.62 Aligned_cols=106 Identities=24% Similarity=0.336 Sum_probs=80.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.++.+||+||||+|..+..+++. .+..+|++||+++++++.|++++..... .....+++++.+|+...... ...||+
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~ 153 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDA 153 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-hhhhhh
Confidence 56789999999999998887764 4567999999999999999998753210 01236899999998765433 468999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|+++...+. .| +. +.+.|+|||+|++-.+
T Consensus 154 I~~~~~~~~--ip----------~~-l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 154 IHVGAAAPV--VP----------QA-LIDQLKPGGRLILPVG 182 (224)
T ss_dssp EEECSBBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred hhhhcchhh--cC----------HH-HHhhcCCCcEEEEEEc
Confidence 999875332 22 23 4678999999998654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=4.4e-11 Score=101.95 Aligned_cols=107 Identities=8% Similarity=0.152 Sum_probs=82.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCC
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~ 174 (297)
.+|++||+||+|.|..+..+++. .+..+|+++|+++...+.|++++...+ -.++++++.+|+.+.+.. ...
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g---l~~~i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG---LQDKVTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC---CCccceeeeccccccccchhhccccc
Confidence 47899999999999999999875 446799999999999999999987543 236899999999988754 236
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+||+|++|... ........+.. +.+.|+|||++++-
T Consensus 132 ~~D~ifiD~~~-------~~~~~~~~l~~-~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 132 TLDMVFLDHWK-------DRYLPDTLLLE-KCGLLRKGTVLLAD 167 (214)
T ss_dssp CEEEEEECSCG-------GGHHHHHHHHH-HTTCEEEEEEEEES
T ss_pred ccceeeecccc-------cccccHHHHHH-HhCccCCCcEEEEe
Confidence 79999999531 11111123444 47899999998764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=6.5e-11 Score=105.13 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=84.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...++.+|||||||.|+.+.++++..+ .+|++|.+++.-++.|++.....+ ..+++++..+|.++. +++||.
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~~~~----~~~fD~ 130 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGWEQF----DEPVDR 130 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCGGGC----CCCCSE
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhhhcc----cccccc
Confidence 346789999999999999999888764 799999999999999999865433 347999999997543 578998
Q ss_pred EEEcCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++--. .+. + .-.-..||+. +.+.|+|||.+++++
T Consensus 131 i~si~~~eh~--~---~~~~~~~~~~-~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 131 IVSIGAFEHF--G---HERYDAFFSL-AHRLLPADGVMLLHT 166 (285)
T ss_dssp EEEESCGGGT--C---TTTHHHHHHH-HHHHSCTTCEEEEEE
T ss_pred eeeehhhhhc--C---chhHHHHHHH-HHhhcCCCCcEEEEE
Confidence 887533 222 1 1123579999 799999999999875
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.4e-11 Score=102.43 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=84.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-------------CCCCCCCeEEEEcch
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-------------EAFSDPRLELVINDA 165 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~-------------~~~~~~rv~~~~~Da 165 (297)
..+++.+|||+|||.|..+..+++. ..+|++||+++.+++.|++..+... ......+++++++|.
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 119 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI 119 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence 3467789999999999999999986 4689999999999999988653210 001246899999998
Q ss_pred HHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 ~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...-......||+|+.-..-.. .+. . ....+++. +.++|+|||.+++.+
T Consensus 120 ~~l~~~~~~~fd~i~~~~~l~~--~~~-~-~r~~~~~~-~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 120 FDLPRTNIGKFDMIWDRGALVA--INP-G-DRKCYADT-MFSLLGKKFQYLLCV 168 (229)
T ss_dssp GGGGGSCCCCEEEEEESSSTTT--SCG-G-GHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred hhccccccCceeEEEEEEEEEe--ccc-h-hhHHHHHH-HHhhcCCcceEEEEE
Confidence 8776556678999987655322 111 1 23467888 899999999766553
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=4.4e-11 Score=106.07 Aligned_cols=115 Identities=8% Similarity=0.058 Sum_probs=76.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~ 178 (297)
...++|||||||+|..+..+++. ..+|++||+++.|++.|++............+..+...|....-.. ..++||+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 45689999999999999999986 3689999999999999998765332100011334455554332211 3468999
Q ss_pred EEEcCC--CCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLA--DPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~--~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|++-.. .+.. .+.... --..+++. +.++|+|||+|++..
T Consensus 133 v~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLP-DSKGDQSEHRLALKN-IASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSC-CTTSSSHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcC-CcccChHHHHHHHHH-HHHHcCcCcEEEEee
Confidence 987432 1110 000011 12358899 799999999999864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.5e-10 Score=104.50 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++++|||||||+|.++..+++. +..+|+++|.++ +++.|++....++ ...+++++.+|..+. ....++||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~---~~~~i~~i~~~~~~l-~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNG---FSDKITLLRGKLEDV-HLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTT---CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhC---ccccceEEEeehhhc-cCcccceeEEEE
Confidence 5789999999999999988886 467999999997 5677877765443 347899999998764 334578999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
...... .. ..-.-..++.. .++.|+|||+++
T Consensus 112 e~~~~~--~~-~e~~~~~~~~a-~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYF--LL-YESMMDTVLYA-RDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTT--BS-TTCCHHHHHHH-HHHHEEEEEEEE
T ss_pred Eeccee--ec-cchhHHHHHHH-HHhccCCCeEEE
Confidence 876432 11 12223356666 689999999985
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=2.2e-10 Score=96.51 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=69.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-.+++|||+|||+|.++.+++.. +..+|++||+|+.+++.|++++... ..+.+++.+|+..+ .++||+|+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~-----~~~~~~~~~d~~~~----~~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF-----KGKFKVFIGDVSEF----NSRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG-----TTSEEEEESCGGGC----CCCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHc-----CCCceEEECchhhh----CCcCcEEE
Confidence 46789999999999999988875 4579999999999999999997654 25789999997654 57899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHH
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
+|+|-.. . .......|+..
T Consensus 115 ~nPP~~~--~--~~~~d~~~l~~ 133 (201)
T d1wy7a1 115 MNPPFGS--Q--RKHADRPFLLK 133 (201)
T ss_dssp ECCCCSS--S--STTTTHHHHHH
T ss_pred EcCcccc--c--cccccHHHHHH
Confidence 9987422 1 12234566655
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=2.5e-11 Score=101.96 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=72.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+..+|||||||+|.++..+. ++++||+++.+++.|++. +++++.+|+.+. ...+++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l-~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------GVFVLKGTAENL-PLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------TCEEEECBTTBC-CSCTTCEEEEEE
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------cccccccccccc-cccccccccccc
Confidence 45589999999999887763 358999999999999872 578999998654 334578999998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
...-..... -..+++. ++++|+|||.+++..
T Consensus 98 ~~~l~h~~d------~~~~l~~-~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 98 VTTICFVDD------PERALKE-AYRILKKGGYLIVGI 128 (208)
T ss_dssp ESCGGGSSC------HHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccccccccc------cccchhh-hhhcCCCCceEEEEe
Confidence 765322111 2368898 899999999998875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.10 E-value=1.6e-10 Score=98.45 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=80.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
...+..+||+||+|+|+.+..+++..+ .+|+++|+++.+++.|++.+...+ -.++.++.+|+..-... ..+||.
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g----~~nv~~~~gd~~~g~~~-~~pfD~ 148 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG----VKNVHVILGDGSKGFPP-KAPYDV 148 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT----CCSEEEEESCGGGCCGG-GCCEEE
T ss_pred ccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcC----CceeEEEECccccCCcc-cCccee
Confidence 446788999999999999988887643 579999999999999999887542 47899999999775433 578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++...-+. .| + . +.++|+|||.|++-.+
T Consensus 149 Iiv~~a~~~--ip-------~---~-l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 149 IIVTAGAPK--IP-------E---P-LIEQLKIGGKLIIPVG 177 (215)
T ss_dssp EEECSBBSS--CC-------H---H-HHHTEEEEEEEEEEEC
T ss_pred EEeeccccc--CC-------H---H-HHHhcCCCCEEEEEEc
Confidence 999865332 23 1 1 3568999999987653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.4e-10 Score=101.87 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=75.1
Q ss_pred CeEEEEccchhHHHHHHHhc----CC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----cc
Q 022451 104 KTIFIMGGGEGSTAREILRH----KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-----SR 172 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~----~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-----~~ 172 (297)
.+||+||||+|.++..+++. .+ ..++++||+++.+++.|++.+.... ....-++.++..++.++.. ..
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccCC
Confidence 47999999999987776542 22 2468999999999999999875322 1112234566666655532 13
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.++||+|++-..-++...+ ..+++. +++.|+|||.+++..
T Consensus 121 ~~~fD~I~~~~~l~~~~d~------~~~l~~-l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKDI------PATLKF-FHSLLGTNAKMLIIV 160 (280)
T ss_dssp CCCEEEEEEESCGGGCSCH------HHHHHH-HHHTEEEEEEEEEEE
T ss_pred CCceeEEEEccceecCCCH------HHHHHH-HHhhCCCCCEEEEEE
Confidence 5789999987553321112 378898 899999999988775
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.8e-10 Score=103.16 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=77.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.++++|||||||+|.++..+++. +..+|+++|.++.+...++ ....++ ..++++++.+|..+. ....++||+|+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~-~~~~~~---~~~~i~~~~~~~~~l-~~~~~~~D~Iv 107 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMD-IIRLNK---LEDTITLIKGKIEEV-HLPVEKVDVII 107 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHH-HHHHTT---CTTTEEEEESCTTTS-CCSCSCEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHH-HHHHhC---CCccceEEEeeHHHh-cCccccceEEE
Confidence 36789999999999999999986 4679999999999876444 333322 347899999998774 33457899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+...... .. ....-..++.. ..+.|+|||+++.
T Consensus 108 se~~~~~--~~-~e~~~~~~~~a-~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYF--LL-FESMLDSVLYA-KNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTT--BT-TTCHHHHHHHH-HHHHEEEEEEEES
T ss_pred Eeeeeee--cc-cccccHHHHHH-HHhcCCCCcEEec
Confidence 9876432 11 12222355555 5789999998863
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.09 E-value=2.8e-10 Score=94.46 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=84.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcc--CCCceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~--~~~yD~I 179 (297)
...+||||.+|+|+++.+++.+ +..+|+.||.|+.+++..++++...+ ..+....++..|+.+++... ..+||+|
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~--~~~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhc--ccccccccccccccccccccccCCcccEE
Confidence 5679999999999999999986 57899999999999999999987432 23457889999999988653 4579999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHH-cccCCCCcEEEEec
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGvl~~~~ 219 (297)
++|||-.. .++ .+.++.+. ...|+++|++++..
T Consensus 120 FlDPPY~~------~~~-~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 120 FLDPPFHF------NLA-EQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp EECCCSSS------CHH-HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EechhHhh------hhH-HHHHHHHHHhCCcCCCcEEEEEe
Confidence 99987321 222 23444411 36899999999875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.08 E-value=2.7e-10 Score=95.71 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=66.8
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
....-.+++|||+|||+|.++..++.. +..+|++||+|+.+++.|+++. ++++++.+|+.+ .+++|
T Consensus 43 ~~~dl~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~---------~~~~~~~~D~~~----l~~~f 108 (197)
T d1ne2a_ 43 NDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---------GGVNFMVADVSE----ISGKY 108 (197)
T ss_dssp HHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---------TTSEEEECCGGG----CCCCE
T ss_pred HcCCCCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc---------ccccEEEEehhh----cCCcc
Confidence 333456899999999999999888876 4578999999999999999874 468899999754 35789
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
|+|++|+|-.. .....+..|++.
T Consensus 109 D~Vi~NPPfg~----~~~~~D~~fl~~ 131 (197)
T d1ne2a_ 109 DTWIMNPPFGS----VVKHSDRAFIDK 131 (197)
T ss_dssp EEEEECCCC-----------CHHHHHH
T ss_pred eEEEeCcccch----hhhhchHHHHHH
Confidence 99999987321 123335677665
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.06 E-value=1.7e-10 Score=100.67 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=81.9
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|||||||+|.++..+++..|..+++++|+ |++++.|++++...+ ..+|++++.+|..+. .+..||+|+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~---~~~ri~~~~~d~~~~---~p~~~D~v~ 152 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG---LADRVTVAEGDFFKP---LPVTADVVL 152 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT---CTTTEEEEECCTTSC---CSCCEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC---Ccceeeeeeeecccc---ccccchhhh
Confidence 4568999999999999999999888889999998 889999999876432 247899999996542 345699998
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+...-+. -+ .-....+++. +++.|+|||.+++..
T Consensus 153 ~~~vLh~--~~--d~~~~~lL~~-i~~~LkpgG~llI~d 186 (256)
T d1qzza2 153 LSFVLLN--WS--DEDALTILRG-CVRALEPGGRLLVLD 186 (256)
T ss_dssp EESCGGG--SC--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccccccc--cC--cHHHHHHHHH-HHhhcCCcceeEEEE
Confidence 8654221 01 0012367888 799999999888764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=1.3e-10 Score=99.63 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=78.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC------CCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHhcc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK------TVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESR 172 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~------~~~~v~~VEid~~vi~~a~~~f~~~~-~~~~~~rv~~~~~Da~~~l~~~ 172 (297)
..+..+||+||||+|+.+..+++.. +..+|++||+++++++.|++++.... ....-.++.++.+|+.+....
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~- 156 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP- 156 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-
Confidence 3567899999999999987776541 23589999999999999998764210 001135899999999775443
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+||+|+++..-+. .| +. +.+.|+|||++++-.+
T Consensus 157 ~~~fD~Iiv~~a~~~--~p----------~~-l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPD--TP----------TE-LINQLASGGRLIVPVG 191 (223)
T ss_dssp GCSEEEEEECSCBSS--CC----------HH-HHHTEEEEEEEEEEES
T ss_pred ccceeeEEEEeechh--ch----------HH-HHHhcCCCcEEEEEEe
Confidence 468999999876332 22 12 4679999999987654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=3e-10 Score=101.95 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++++|||||||+|.++..+++. +..+|++||.++.+ ..+++....++ ..++++++.+|..+. ....++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~---~~~~v~~~~~~~~~~-~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANK---LDHVVTIIKGKVEEV-ELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTT---CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhC---CccccceEeccHHHc-ccccceeEEEee
Confidence 5789999999999999999986 46789999999865 55555544432 246899999998764 334578999999
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
+..... ....-.-.+++.. +.+.|+|||.++
T Consensus 107 ~~~~~~---l~~e~~~~~~l~~-~~r~Lkp~G~ii 137 (316)
T d1oria_ 107 EWMGYC---LFYESMLNTVLHA-RDKWLAPDGLIF 137 (316)
T ss_dssp CCCBBT---BTBTCCHHHHHHH-HHHHEEEEEEEE
T ss_pred eeeeee---eccHHHHHHHHHH-HHhcCCCCeEEE
Confidence 876422 1112223467777 789999999886
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.4e-09 Score=93.07 Aligned_cols=137 Identities=11% Similarity=0.058 Sum_probs=91.2
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----cCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-----~~~~y 176 (297)
...++||||||+|+++..+++..+..+++++|+|+++++.|+++...++ -..|+.++..+....+.. ..++|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~---l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN---LSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT---CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC---CCcceeeeeeccHHhhhhhhhhcccCce
Confidence 4568999999999999998887677899999999999999999987654 246899988776544321 34689
Q ss_pred eEEEEcCCC-CCCC-------------CCc-------cCccc----HHHHHHH---HcccCCCCcEEEEecCCCCCcCCc
Q 022451 177 DVIIGDLAD-PIEG-------------GPC-------YKLYT----KSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHT 228 (297)
Q Consensus 177 D~Ii~D~~~-~~~~-------------~p~-------~~L~t----~ef~~~~---~~~~L~pgGvl~~~~~~p~~~~~~ 228 (297)
|+|++++|- +... .|. ..+++ ..|++.+ ....++..|.+....+ ..
T Consensus 138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig------~~ 211 (250)
T d2h00a1 138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG------KK 211 (250)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES------ST
T ss_pred eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEec------ch
Confidence 999999972 1100 010 01111 1244432 3567899998876643 22
Q ss_pred hHHHHHHHHHHhh-CCceeE
Q 022451 229 EVFSCIYNTLRQV-FKYVVP 247 (297)
Q Consensus 229 ~~~~~i~~~l~~~-F~~v~~ 247 (297)
+.+..+.+.+++. |.++..
T Consensus 212 ~~l~~i~~~L~~~g~~~i~~ 231 (250)
T d2h00a1 212 CSLAPLKEELRIQGVPKVTY 231 (250)
T ss_dssp TSHHHHHHHHHHTTCSEEEE
T ss_pred hhHHHHHHHHHHcCCCeEEE
Confidence 3445566666554 555543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.88 E-value=1e-08 Score=85.48 Aligned_cols=115 Identities=27% Similarity=0.285 Sum_probs=86.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-cCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKE 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~-~~~ 174 (297)
...+...+||++||+|+.+..+++..+..+|+++|.|+.+++.|++.+... ..|++++.++..+. +.. ..+
T Consensus 20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-----~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-----SDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----cccccchhHHHhhHHHHHHHcCCC
Confidence 345678999999999999999999767889999999999999999987643 36899999876442 333 247
Q ss_pred CceEEEEcCCCCC--CCCC-ccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPI--EGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~--~~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|.|+.|+.-.. ...+ ...-+..+.+.. +.+.|+|||.+++-+
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~-a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKK-AEDLLNPGGRIVVIS 141 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHH-GGGGEEEEEEEEEEE
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHH-HHHhcCCCCeeeeec
Confidence 8999999975210 0001 011233467777 789999999998764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.7e-09 Score=95.33 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=80.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCCCCCCeEEEEcchHHHH-hcc
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARAEL-ESR 172 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~~~rv~~~~~Da~~~l-~~~ 172 (297)
...+...|||||||+|.++..+++..+..++++||+++.+++.|++..... .......+++++++|+.+.- ...
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~ 227 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER 227 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccc
Confidence 346678999999999999999988777789999999999999998764311 01123578999999986531 111
Q ss_pred CCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
-...|+|++..... .+ .+ ...+.+ +.+.|||||.++..
T Consensus 228 ~~~advi~~~~~~f---~~--~~--~~~l~e-~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 228 IANTSVIFVNNFAF---GP--EV--DHQLKE-RFANMKEGGRIVSS 265 (328)
T ss_dssp HHHCSEEEECCTTT---CH--HH--HHHHHH-HHTTCCTTCEEEES
T ss_pred cCcceEEEEcceec---ch--HH--HHHHHH-HHHhCCCCcEEEEe
Confidence 12368898865422 11 11 246677 68999999999875
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=1.1e-08 Score=93.62 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=87.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-----------CCCCCeEEEEcchHHHHh
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-----------FSDPRLELVINDARAELE 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-----------~~~~rv~~~~~Da~~~l~ 170 (297)
.+++|||..+|+|.-+...+...+..+|+++|+|+..++.+++++.++... .....+.+...|+..++.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 678999999999999876555446789999999999999999998766321 112357899999999998
Q ss_pred ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
..+++||+|.+|++. .|. .|++. +.+.++.||+|++..
T Consensus 125 ~~~~~fDvIDiDPfG----s~~------pflds-Ai~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDPFG----SPM------EFLDT-ALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECCSS----CCH------HHHHH-HHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCCCC----CcH------HHHHH-HHHHhccCCEEEEEe
Confidence 877899999999873 232 68888 788999999998874
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=7.7e-10 Score=95.26 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=69.0
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC------------------------
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP------------------------ 156 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~------------------------ 156 (297)
.++++|||||||+|..+..++.. ...+|+++|+++.+++.|+++...........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45678999999999887666654 35689999999999999999865322110000
Q ss_pred -Ce-EEEEcchH--HHH-hccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 157 -RL-ELVINDAR--AEL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 157 -rv-~~~~~Da~--~~l-~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++ .....+.. ..+ ....++||+|++...-+. .+...-.-..+++. +.++|+|||.+++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~--~~~~~~~~~~~l~~-i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC--ACCSLDAYRAALCN-LASLLKPGGHLVTTV 193 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH--HCSSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHH--hcccHHHHHHHHHH-HHhccCCCcEEEEEE
Confidence 00 00111100 000 112467999987543111 00000011357788 799999999998764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=3.6e-08 Score=91.06 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=73.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-----CCCCCCCeEE-EEcchH--HHHhc
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----EAFSDPRLEL-VINDAR--AELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~-----~~~~~~rv~~-~~~Da~--~~l~~ 171 (297)
..+..++||||||.|.++.++++..+.+++++||+++.+++.|++...... .......+.+ ..+|.. .+...
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 356789999999999999999987667799999999999999998643210 0011223333 223321 12222
Q ss_pred cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 172 ~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
.-...|+|+++.... .+ .+ ...+.+ +.+.|||||.++..
T Consensus 294 ~~~~adVV~inn~~f---~~--~l--~~~L~e-i~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 294 LIPQCDVILVNNFLF---DE--DL--NKKVEK-ILQTAKVGCKIISL 332 (406)
T ss_dssp HGGGCSEEEECCTTC---CH--HH--HHHHHH-HHTTCCTTCEEEES
T ss_pred ccccceEEEEecccC---ch--HH--HHHHHH-HHHhcCCCcEEEEe
Confidence 224689999875422 11 11 256677 78999999998764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.56 E-value=1.6e-07 Score=80.44 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=71.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+..+||+||+|+|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+..+-- .......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~------~~n~~i~~~D~l~~~~-~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFKF-PKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCCC-CSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc------ccchhhhhhhhhhccc-ccccccee
Confidence 357889999999999999999986 46899999999999999987642 4799999999877521 22333457
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+.++|- ...| ..+..++....-+..++++|
T Consensus 90 v~NLPY--------nIss-~il~~ll~~~~~~~~vlm~Q 119 (235)
T d1qama_ 90 FGNIPY--------NIST-DIIRKIVFDSIADEIYLIVE 119 (235)
T ss_dssp EEECCG--------GGHH-HHHHHHHHSCCCSEEEEEEE
T ss_pred eeeehh--------hhhH-HHHHHHHhhhhhhhhhhhhh
Confidence 777652 2223 33333244443344566666
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.1e-08 Score=89.16 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=68.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC-------------------------
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD------------------------- 155 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~------------------------- 155 (297)
..++++||||||+|..+...+.. ...+|+++|+++.+++.+++++......++-
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 45789999999999776443332 2468999999999999999886432211110
Q ss_pred CC-eEEEEcchHH-----HHhccCCCceEEEEcCCCCCCCCCccCc-ccHHHHHHHHcccCCCCcEEEEec
Q 022451 156 PR-LELVINDARA-----ELESRKESYDVIIGDLADPIEGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 156 ~r-v~~~~~Da~~-----~l~~~~~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.. ..+...|... .......+||+|++-..-+. .+ ... --..+++. +.++|||||+|++..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~--i~-~~~~~~~~~l~~-~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA--VS-PDLASFQRALDH-ITTLLRPGGHLLLIG 198 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH--HC-SSHHHHHHHHHH-HHTTEEEEEEEEEEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHH--Hc-cCHHHHHHHHHH-HHHHcCCCCEEEEec
Confidence 00 0122223211 00112347999988654211 11 010 01356777 789999999998753
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.49 E-value=1.2e-07 Score=84.78 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=90.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhc-----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRH-----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~-----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~ 174 (297)
...+.+|||.|||+|+++.++.++ ....+++++|+|+.++++|+....... ....+..+|.... ....
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~--~~~~ 187 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-----QKMTLLHQDGLAN--LLVD 187 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-----CCCEEEESCTTSC--CCCC
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-----hhhhhhccccccc--cccc
Confidence 345678999999999998887642 234579999999999999998876542 4567788885432 2457
Q ss_pred CceEEEEcCCCCCC------------CCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhC
Q 022451 175 SYDVIIGDLADPIE------------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~------------~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F 242 (297)
+||+|+.++|-... ..........-|++. +.+.|+|||.+++-. |..+........+++.+.+.+
T Consensus 188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~~I~--p~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQ-GMRYTKPGGYLFFLV--PDAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHH-HHHTEEEEEEEEEEE--EGGGGGSTTHHHHHHHHHHHE
T ss_pred cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHH-HHHhcCCCCceEEEe--cCccccCchhHHHHHHHHhCC
Confidence 89999999973110 000011122347888 789999999876653 222444455566777777665
Q ss_pred C
Q 022451 243 K 243 (297)
Q Consensus 243 ~ 243 (297)
.
T Consensus 265 ~ 265 (328)
T d2f8la1 265 H 265 (328)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=3.8e-06 Score=75.52 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCce
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD 177 (297)
....+|||+-||.|.++..+++. ..+|++||+++..++.|+++...++ -.+++++.+|+.+.+.. ...+||
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~----i~n~~~~~~~~~~~~~~~~~~~~~~d 284 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNG----LQNVTFYHENLEEDVTKQPWAKNGFD 284 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcc----cccceeeecchhhhhhhhhhhhccCc
Confidence 45678999999999999999875 5799999999999999999987663 36899999998877643 246799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|++|++.. +. . +..+. +. .++|.=++.+.+
T Consensus 285 ~vilDPPR~---G~-----~-~~~~~-l~-~~~~~~ivYVSC 315 (358)
T d1uwva2 285 KVLLDPARA---GA-----A-GVMQQ-II-KLEPIRIVYVSC 315 (358)
T ss_dssp EEEECCCTT---CC-----H-HHHHH-HH-HHCCSEEEEEES
T ss_pred eEEeCCCCc---cH-----H-HHHHH-HH-HcCCCEEEEEeC
Confidence 999998742 21 2 45565 33 346766666654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=3.7e-06 Score=73.68 Aligned_cols=141 Identities=17% Similarity=0.094 Sum_probs=93.6
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
++...++.+|||+++|.|+=+..++......+|+++|+++.-++..++++...+ -..+.+...|....-.....+|
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g----~~~~~~~~~~~~~~~~~~~~~f 172 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCGEQQF 172 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHTTCCE
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc----ccceeeeccccccchhcccccc
Confidence 334566789999999999988888776556899999999999999998876442 2345555555432222245689
Q ss_pred eEEEEcCCC-CC---CCCCc-------cC-----cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHh
Q 022451 177 DVIIGDLAD-PI---EGGPC-------YK-----LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (297)
Q Consensus 177 D~Ii~D~~~-~~---~~~p~-------~~-----L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~ 240 (297)
|.|++|++= .. ...|. .. -...+.+.. +.+.|+|||.|+-.+++. .++.-+.+++.+-+
T Consensus 173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~-a~~~lk~gG~lvYsTCS~----~~~ENE~vv~~~l~ 247 (284)
T d1sqga2 173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA-IWPHLKTGGTLVYATCSV----LPEENSLQIKAFLQ 247 (284)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHH-HGGGEEEEEEEEEEESCC----CGGGTHHHHHHHHH
T ss_pred cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHH-HHHhcCCCceEEEeeecC----chhhCHHHHHHHHH
Confidence 999999982 11 11120 00 113456666 678999999998877653 33444556665555
Q ss_pred hCCcee
Q 022451 241 VFKYVV 246 (297)
Q Consensus 241 ~F~~v~ 246 (297)
.+++..
T Consensus 248 ~~~~~~ 253 (284)
T d1sqga2 248 RTADAE 253 (284)
T ss_dssp HCTTCE
T ss_pred hCCCcE
Confidence 566544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.6e-06 Score=71.14 Aligned_cols=142 Identities=22% Similarity=0.307 Sum_probs=92.4
Q ss_pred CCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH------h-cc
Q 022451 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------E-SR 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l------~-~~ 172 (297)
.+..+||||||+.|++++.+.+. .+...|.++|+.|.- .-+.+.++.+|....- . ..
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~---------------~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---------------PIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---------------CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc---------------ccCCceEeecccccchhhhhhhhhcc
Confidence 57789999999999999998874 455789999986521 1367888888874321 1 13
Q ss_pred CCCceEEEEcCCCCCCCCCc------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCcee
Q 022451 173 KESYDVIIGDLADPIEGGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (297)
Q Consensus 173 ~~~yD~Ii~D~~~~~~~~p~------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (297)
..++|+|++|.......... ..|.. .-+.. +.+.|++||.+++-. + +.+....++..++..|..|.
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~-~~l~~-a~~~Lk~gG~fV~K~-----F-~g~~~~~l~~~l~~~F~~V~ 157 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVE-LALEM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVK 157 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHH-HHHHH-HHHHEEEEEEEEEEE-----E-SSTTHHHHHHHHHHHEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHH-HHHHh-hhhccCCCCcEEEEE-----e-cCccHHHHHHHHHhhcCEEE
Confidence 56899999997633221110 01211 12222 468999999999885 2 23456788899999999987
Q ss_pred EEEEecCccC-CceeEEEEec
Q 022451 247 PYSAHIPSFA-DTWGWIMVSI 266 (297)
Q Consensus 247 ~~~~~vp~~~-~~~~~~~as~ 266 (297)
.+. +-.|.. ..-.|++|-.
T Consensus 158 ~~K-P~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 158 VRK-PDSSRARSREVYIVATG 177 (180)
T ss_dssp EEC-CTTSCTTCCEEEEEEEE
T ss_pred EEC-CCCcccCCceEEEEEec
Confidence 664 111222 2235666643
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.26 E-value=9.6e-07 Score=73.59 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=84.4
Q ss_pred HhcCCCCCeEEEEccchhHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCC
Q 022451 97 LLHHPNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES 175 (297)
Q Consensus 97 l~~~~~~~~VL~iG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~ 175 (297)
++..+.+.+|||.|||+|.++..+.+ +.....+.++|+|+..++++ .+..++.+|.... ....+
T Consensus 14 l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------------~~~~~~~~~~~~~--~~~~~ 78 (223)
T d2ih2a1 14 LAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------PWAEGILADFLLW--EPGEA 78 (223)
T ss_dssp HCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------------TTEEEEESCGGGC--CCSSC
T ss_pred hcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------------ccceeeeeehhcc--ccccc
Confidence 33456778999999999999887775 34557899999998754322 3467888886543 23578
Q ss_pred ceEEEEcCCCCCC----CCCc-------------------cCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHH
Q 022451 176 YDVIIGDLADPIE----GGPC-------------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFS 232 (297)
Q Consensus 176 yD~Ii~D~~~~~~----~~p~-------------------~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~ 232 (297)
||+|+.+++-... ..+. ..-....|++. +.+.|++||.+++-+. ..+......+
T Consensus 79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-al~~lk~~G~~~~I~p--~~~l~~~~~~ 155 (223)
T d2ih2a1 79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEK-AVRLLKPGGVLVFVVP--ATWLVLEDFA 155 (223)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHH-HHHHEEEEEEEEEEEE--GGGGTCGGGH
T ss_pred cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHH-HHHhcccCCceEEEEe--eeeccCcchH
Confidence 9999999873110 0000 00013467777 6899999999876642 2244444456
Q ss_pred HHHHHHHhhCC
Q 022451 233 CIYNTLRQVFK 243 (297)
Q Consensus 233 ~i~~~l~~~F~ 243 (297)
.+.+.+.+.+.
T Consensus 156 ~lR~~l~~~~~ 166 (223)
T d2ih2a1 156 LLREFLAREGK 166 (223)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHhcCC
Confidence 66666666543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.26 E-value=4.6e-07 Score=77.93 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
...++|||||||+|.++..+++..|..++++.|+ |.+++.+. ..+|++++.+|.++. ....|+|+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~ri~~~~gd~~~~----~p~~D~~~ 144 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP----------PLSGIEHVGGDMFAS----VPQGDAMI 144 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CCTTEEEEECCTTTC----CCCEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC----------CCCCeEEecCCcccc----cccceEEE
Confidence 4468999999999999999999888899999999 66654211 347999999996532 23569988
Q ss_pred EcCCC-CCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 181 GDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 181 ~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+-..- .+ + .-.....++. +++.|+|||.+++..
T Consensus 145 l~~vLh~~---~--de~~~~iL~~-~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 145 LKAVCHNW---S--DEKCIEFLSN-CHKALSPNGKVIIVE 178 (244)
T ss_dssp EESSGGGS---C--HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EehhhhhC---C--HHHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 76442 22 1 1112357888 799999999887764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.23 E-value=6.3e-08 Score=83.59 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=61.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
..+..+||+||+|+|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++++|+.++ .-....++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~------~~n~~ii~~D~l~~-~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL------NTRVTLIHQDILQF-QFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT------CSEEEECCSCCTTT-TCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh------ccchhhhhhhhhcc-ccccceeeeE
Confidence 346778999999999999999986 46899999999999888876642 37899999998764 2234567778
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
+.+++
T Consensus 98 v~NLP 102 (245)
T d1yuba_ 98 VGNIP 102 (245)
T ss_dssp EEECC
T ss_pred eeeee
Confidence 88875
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.17 E-value=9.2e-07 Score=76.00 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=70.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++|||||||+|.++..+++.+|..++++.|+ |.+++.+. ..+|++++.+|.++ . ...+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~----------~~~rv~~~~gD~f~---~-~p~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS----------GSNNLTYVGGDMFT---S-IPNADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC----------CBTTEEEEECCTTT---C-CCCCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc----------ccCceEEEecCccc---C-CCCCcEEEE
Confidence 457899999999999999999888899999999 66654322 24799999999654 2 346899987
Q ss_pred cCCC-CCCCCCccCcccHHHHHHHHcccCCCC---cEEEEe
Q 022451 182 DLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVTQ 218 (297)
Q Consensus 182 D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pg---Gvl~~~ 218 (297)
-..- .| + .-.....++. +++.|+|| |.+++.
T Consensus 145 ~~vLHdw---~--d~~~~~iL~~-~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 145 KYILHNW---T--DKDCLRILKK-CKEAVTNDGKRGKVTII 179 (244)
T ss_dssp ESCGGGS---C--HHHHHHHHHH-HHHHHSGGGCCCEEEEE
T ss_pred EeecccC---C--hHHHHHHHHH-HHHHcCcccCCcEEEEE
Confidence 6542 22 1 1113468888 79999998 555554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=2.4e-05 Score=65.22 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
-++++++|||+|+|.=+.-++-..|..+++.||.+..=++..++-.... +-.+++++++.+.++. ...+||+|+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~~~--~~~~fD~V~ 137 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----KLENIEPVQSRVEEFP--SEPPFDGVI 137 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----TCSSEEEEECCTTTSC--CCSCEEEEE
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc----CCcceeeeccchhhhc--cccccceeh
Confidence 3567999999999975555554457889999999999888877754432 2368999999987653 346899999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+-++.+. ..++.. +...++++|.++..-+
T Consensus 138 sRA~~~~----------~~ll~~-~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 138 SRAFASL----------NDMVSW-CHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSCSSSH----------HHHHHH-HTTSEEEEEEEEEEES
T ss_pred hhhhcCH----------HHHHHH-HHHhcCCCcEEEEECC
Confidence 9887432 256666 7999999999988765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.09 E-value=4.2e-06 Score=71.87 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=66.7
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCC-----CCCeEEEEcchHHHHhccCCCc
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKESY 176 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----~~rv~~~~~Da~~~l~~~~~~y 176 (297)
.+.+|||+-+|.|..+..++.. ..+|+++|-+|.+..+.++.+........ -.|++++.+|+.+|+....++|
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~ 165 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP 165 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred CCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence 3458999999999999999986 36899999999999888876542110000 1379999999999998877889
Q ss_pred eEEEEcCCCCC
Q 022451 177 DVIIGDLADPI 187 (297)
Q Consensus 177 D~Ii~D~~~~~ 187 (297)
|+|++|+.-|.
T Consensus 166 DvIYlDPMFp~ 176 (250)
T d2oyra1 166 QVVYLDPMFPH 176 (250)
T ss_dssp SEEEECCCCCC
T ss_pred CEEEECCCCcc
Confidence 99999997654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.6e-06 Score=74.92 Aligned_cols=76 Identities=13% Similarity=0.286 Sum_probs=58.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----HhccCC
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LESRKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-----l~~~~~ 174 (297)
....+.||+||+|.|.++..+++. ..+|++||+|+.+++..++.+.. .++++++.+|+..+ .....+
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~~~~ii~~D~l~~~~~~~~~~~~~ 90 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL------GPKLTIYQQDAMTFNFGELAEKMGQ 90 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT------GGGEEEECSCGGGCCHHHHHHHHTS
T ss_pred CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh------ccchhHHhhhhhhhcccccccccCC
Confidence 356789999999999999999986 46899999999999999886532 37899999999764 111223
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
+| .|+.++|
T Consensus 91 ~~-~vvgNlP 99 (252)
T d1qyra_ 91 PL-RVFGNLP 99 (252)
T ss_dssp CE-EEEEECC
T ss_pred Ce-EEEecch
Confidence 34 6667764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.07 E-value=2.5e-06 Score=72.63 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=67.6
Q ss_pred CCCCeEEEEccchhHHHHHHHh----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-cC
Q 022451 101 PNPKTIFIMGGGEGSTAREILR----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RK 173 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~----~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~-~~ 173 (297)
-+|++||+||++.|+.+..++. ..+..+|+++|+++.....+.. ..+|++++.+|... .+.. ..
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---------~~~~I~~i~gDs~~~~~~~~l~~ 149 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------DMENITLHQGDCSDLTTFEHLRE 149 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------GCTTEEEEECCSSCSGGGGGGSS
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---------cccceeeeecccccHHHHHHHHh
Confidence 3789999999999987765543 3356799999999854322111 24789999999743 3333 23
Q ss_pred CCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
..+|+|++|..+.. ...+ .++ . ....|++||++++...
T Consensus 150 ~~~dlIfID~~H~~----~~v~--~~~-~--~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 150 MAHPLIFIDNAHAN----TFNI--MKW-A--VDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SCSSEEEEESSCSS----HHHH--HHH-H--HHHTCCTTCEEEECSC
T ss_pred cCCCEEEEcCCcch----HHHH--HHH-H--HhcccCcCCEEEEEcC
Confidence 46899999975321 0111 122 2 3468999999998753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=7.1e-05 Score=63.63 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=97.1
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~I 179 (297)
..++++|||+|+|.=+.-++-..|..+++.||.+..=++..+.-.... +-.++.++++.+.++-.. ..++||+|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----~L~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----QLENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----CCCCcEEEeehhhhccccccccccceEE
Confidence 567999999999965554444356789999999998887766543322 225789999998876533 24689999
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce-eEEEEecCccCCc
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV-VPYSAHIPSFADT 258 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v-~~~~~~vp~~~~~ 258 (297)
++-++.+. ..+++. +...|+++|.++..-+.. ..+.+....+.+......+ ......+|.....
T Consensus 146 ~sRAva~l----------~~ll~~-~~~~l~~~g~~i~~KG~~----~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~ 210 (239)
T d1xdza_ 146 TARAVARL----------SVLSEL-CLPLVKKNGLFVALKAAS----AEEELNAGKKAITTLGGELENIHSFKLPIEESD 210 (239)
T ss_dssp EEECCSCH----------HHHHHH-HGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCE
T ss_pred EEhhhhCH----------HHHHHH-HhhhcccCCEEEEECCCC----hHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCC
Confidence 99987432 256666 789999999998876532 2344455555555443322 2223456765544
Q ss_pred eeEEEEecCC
Q 022451 259 WGWIMVSIYN 268 (297)
Q Consensus 259 ~~~~~as~~~ 268 (297)
..+++.-|..
T Consensus 211 r~lv~i~K~~ 220 (239)
T d1xdza_ 211 RNIMVIRKIK 220 (239)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEEECC
Confidence 4555555443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.05 E-value=1.4e-06 Score=74.60 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
..++|||||||.|..+..+++.+|..+++++|+-+ +++.++ ..+|+++..+|.++-+ ...|++++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~----------~~~r~~~~~~d~~~~~----P~ad~~~l 145 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP----------SYPGVEHVGGDMFVSI----PKADAVFM 145 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC----------CCTTEEEEECCTTTCC----CCCSCEEC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc----------cCCceEEecccccccC----CCcceEEE
Confidence 35789999999999999999988899999999944 433222 3479999999965432 23455554
Q ss_pred cCC-CCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 182 D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
-.. ..+ + .-.....++. +++.|+|||.+++.
T Consensus 146 ~~vlh~~---~--d~~~~~iL~~-~~~al~pgg~~li~ 177 (243)
T d1kyza2 146 KWICHDW---S--DEHCLKFLKN-CYEALPDNGKVIVA 177 (243)
T ss_dssp SSSSTTS---C--HHHHHHHHHH-HHHHCCSSSCEEEE
T ss_pred EEEeecC---C--HHHHHHHHHH-HHHhcCCCceEEEE
Confidence 322 222 1 1123468888 79999999977765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=5.8e-06 Score=72.21 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=61.6
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
......||+||+|.|.++..+++.. .+|++||+|+.+++..++.+.... ...+++++.+|+..+ .-..++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~---~~~~~~~i~~D~l~~---~~~~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTP---VASKLQVLVGDVLKT---DLPFFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTST---TGGGEEEEESCTTTS---CCCCCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhc---cccchhhhHHHHhhh---hhhhhhhh
Confidence 3457789999999999999999873 699999999999999998775321 236899999998654 23456788
Q ss_pred EEcCC
Q 022451 180 IGDLA 184 (297)
Q Consensus 180 i~D~~ 184 (297)
+.++|
T Consensus 91 V~NLP 95 (278)
T d1zq9a1 91 VANLP 95 (278)
T ss_dssp EEECC
T ss_pred hcchH
Confidence 88875
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=9.3e-05 Score=64.73 Aligned_cols=136 Identities=15% Similarity=0.032 Sum_probs=89.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKES 175 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~ 175 (297)
...++.+|||+++|.|+-+.+++.. .+..+|+++|+++.-++..++++...+ -.++++...|+..+-.. ...+
T Consensus 91 ~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g----~~~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 91 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG----VSCCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT----CCSEEEEECCGGGSCTTCGGGTT
T ss_pred CCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC----ccceeeeehhhhhhcccccccce
Confidence 3456788999999999977776653 346789999999999999999887542 36799999998765332 1267
Q ss_pred ceEEEEcCCCCCCC----CCc-------c-----Cc--ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHH
Q 022451 176 YDVIIGDLADPIEG----GPC-------Y-----KL--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237 (297)
Q Consensus 176 yD~Ii~D~~~~~~~----~p~-------~-----~L--~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~ 237 (297)
||.|++|++=...+ .|. . .| .....+.. +. .|+|||.|+-.+++- .++.-+.+++.
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~-a~-~l~~gG~lvYsTCSl----~~~ENe~vV~~ 240 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCH-AL-TFPSLQRLVYSTCSL----CQEENEDVVRD 240 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHH-HT-TCTTCCEEEEEESCC----CGGGTHHHHHH
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHH-hh-hcccccEEEEeeccC----ChhHhHHHHHH
Confidence 99999999821110 110 0 01 11223333 33 579999988777642 34444566666
Q ss_pred HHhhCCc
Q 022451 238 LRQVFKY 244 (297)
Q Consensus 238 l~~~F~~ 244 (297)
+-+.+++
T Consensus 241 ~L~~~~~ 247 (293)
T d2b9ea1 241 ALQQNPG 247 (293)
T ss_dssp HHTTSTT
T ss_pred HHHhCCC
Confidence 5555654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.00 E-value=3.1e-05 Score=68.60 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=89.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
...++.+|||+++|.|+=+..++.. .....|+++|+++.-+...++++...+ ..++.+...|+..+ .....+||
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----~~~i~~~~~d~~~~-~~~~~~fD 187 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----VLNVILFHSSSLHI-GELNVEFD 187 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----CCSEEEESSCGGGG-GGGCCCEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----hhcccccccccccc-cccccccc
Confidence 3456789999999999977766653 335689999999999999988776432 35788888888765 34467899
Q ss_pred EEEEcCC-CCC---CCCCcc--C----------cccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 178 VIIGDLA-DPI---EGGPCY--K----------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 178 ~Ii~D~~-~~~---~~~p~~--~----------L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.|++|++ +.. ...|.. . -...+.+.. +.+.|+|||.++..+++- ..+.-+.+++.+-+.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lk~gG~lVYsTCSl----~~eENE~VV~~~L~~ 262 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK-GLEVLKPGGILVYSTCSL----EPEENEFVIQWALDN 262 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEESCC----CGGGTHHHHHHHHHH
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHh-hhheeCCCcEEEEeeccC----ChHhHHHHHHHHHhc
Confidence 9999998 211 111210 0 112345566 578999999998777653 233334444444444
Q ss_pred CC
Q 022451 242 FK 243 (297)
Q Consensus 242 F~ 243 (297)
++
T Consensus 263 ~~ 264 (313)
T d1ixka_ 263 FD 264 (313)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.99 E-value=2.9e-05 Score=63.42 Aligned_cols=110 Identities=28% Similarity=0.248 Sum_probs=78.0
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-cCC
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKE 174 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~-~~~ 174 (297)
...++..++|..+|+|+.+.++++. ..+|+++|.||.++..|++. .++++.+++++..++ +.. ..+
T Consensus 15 ~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~--------~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 15 AVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL--------HLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp TCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT--------CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc--------cccceeEeehHHHHHHHHHHHcCCC
Confidence 3466788999999999999999985 46999999999999999874 247899988875443 222 236
Q ss_pred CceEEEEcCCCCC--CCCCccCc-ccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPI--EGGPCYKL-YTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~--~~~p~~~L-~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++|.|+.|+--.. ...+...+ .....+.. ....|++||.+++.+
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~-~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQ-AAEVLAPGGRLVVIA 131 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHH-HHhhhCCCCeEEEEe
Confidence 7999999984210 00111111 11234565 578999999998875
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.98 E-value=9.7e-06 Score=66.81 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred CCCCCeEEEEccchhHHH----HHHHhc----CCCcEEEEEECCHHHHHHHHhh------------------hhhccCCC
Q 022451 100 HPNPKTIFIMGGGEGSTA----REILRH----KTVEKVVMCDIDEEVVEFCKSY------------------LVVNKEAF 153 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~----~~l~~~----~~~~~v~~VEid~~vi~~a~~~------------------f~~~~~~~ 153 (297)
...+-+|+.+|||+|--+ ..+.+. ...-+|++.|+|+.+++.|++- |....
T Consensus 22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~--- 98 (193)
T d1af7a2 22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT--- 98 (193)
T ss_dssp SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC---
T ss_pred cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecC---
Confidence 456779999999999743 333321 1234799999999999999853 21100
Q ss_pred CCCCeEEEEcc-hHHH--------Hh---ccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 154 SDPRLELVIND-ARAE--------LE---SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 154 ~~~rv~~~~~D-a~~~--------l~---~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
..........+ .+.. +. ....+||+|++--.--.. .+ -...+.++. +.++|+|||+|++-
T Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~---~~~~~vl~~-l~~~L~pGG~L~lG 170 (193)
T d1af7a2 99 GPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DK---TTQEDILRR-FVPLLKPDGLLFAG 170 (193)
T ss_dssp TTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CH---HHHHHHHHH-HGGGEEEEEEEEEC
T ss_pred CCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence 01111221111 1111 10 123679999986321000 00 012357787 79999999999875
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.90 E-value=7.6e-06 Score=75.47 Aligned_cols=138 Identities=15% Similarity=0.055 Sum_probs=89.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCC-------------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKT-------------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR 166 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~-------------~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~ 166 (297)
.....+|+|-.||+|++..++.++.. ...+.++|+++.+..+|+-++...+. ..++.++..+|..
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~--~~~~~~i~~~d~l 237 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI--GTDRSPIVCEDSL 237 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC--CSSCCSEEECCTT
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC--ccccceeecCchh
Confidence 34578999999999999877765311 12489999999999999988765432 2345678888864
Q ss_pred HHHhccCCCceEEEEcCCCCCCCCC-----------ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHH
Q 022451 167 AELESRKESYDVIIGDLADPIEGGP-----------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (297)
Q Consensus 167 ~~l~~~~~~yD~Ii~D~~~~~~~~p-----------~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~ 235 (297)
.. ....+||+|+.++|-...... ...-....|++. +.+.|++||.+++-.. .+..........++
T Consensus 238 ~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~~~~Lk~~G~~~iI~p-~~~L~~~~~~~~iR 313 (425)
T d2okca1 238 EK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH-MMLMLKTGGRAAVVLP-DNVLFEAGAGETIR 313 (425)
T ss_dssp TS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEE-HHHHHCSTHHHHHH
T ss_pred hh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHH-HHHhcCCCCeEEEEec-hHHhhhhhhHHHHH
Confidence 32 235689999999983211000 001112458888 7899999998876541 11122333445666
Q ss_pred HHHHhhCC
Q 022451 236 NTLRQVFK 243 (297)
Q Consensus 236 ~~l~~~F~ 243 (297)
+.|-+.+.
T Consensus 314 ~~Ll~~~~ 321 (425)
T d2okca1 314 KRLLQDFN 321 (425)
T ss_dssp HHHHHHEE
T ss_pred HHHHHhcc
Confidence 76666554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.87 E-value=1.6e-05 Score=67.77 Aligned_cols=133 Identities=12% Similarity=0.019 Sum_probs=84.1
Q ss_pred CCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
.+..+|+|||||.|+.+..++...+...+.++++=-.. . -.+.....+..+-+++...+-..++ ...+.|+|+
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~---~--e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vl 137 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG---H--EEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLL 137 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT---S--CCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEE
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc---c--cCCccccccccccccchhhhhHHhc--CCCcCCEEE
Confidence 45668999999999999999987667788888882110 0 0011111111122455555543332 457899999
Q ss_pred EcCCCCCCCCC-ccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCcee
Q 022451 181 GDLADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (297)
Q Consensus 181 ~D~~~~~~~~p-~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~ 246 (297)
+|... ....+ ..+.-+.+.++. +.+.|+|||-+++..-.| ..+...+.+..|+..|....
T Consensus 138 cDm~e-ss~~~~vd~~Rtl~vLel-a~~wLk~gg~FvvKVl~p----y~~~v~e~le~lq~~fgg~l 198 (257)
T d2p41a1 138 CDIGE-SSPNPTVEAGRTLRVLNL-VENWLSNNTQFCVKVLNP----YMSSVIEKMEALQRKHGGAL 198 (257)
T ss_dssp ECCCC-CCSSHHHHHHHHHHHHHH-HHHHCCTTCEEEEEESCC----CSHHHHHHHHHHHHHHCCEE
T ss_pred eeCCC-CCCCchhhhhhHHHHHHH-HHHHcccCCEEEEEECCC----CChHHHHHHHHHHHHhCCee
Confidence 99863 21111 112334456676 689999999999987555 23455677788888898754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.46 E-value=6.6e-05 Score=66.60 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=51.0
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~ 168 (297)
....||+||.|.|.++..+++.....+|+++|+|+...+..++.+. +.+++++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------TSSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-------CCCcEEEeCchhhc
Confidence 4678999999999999999986445799999999999998887642 46899999998754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.00019 Score=67.70 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEccchhHHHHHHHhcC----C--------------CcEEEEEECCHHHHHHHHhhhhhccC
Q 022451 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK----T--------------VEKVVMCDIDEEVVEFCKSYLVVNKE 151 (297)
Q Consensus 90 e~l~~~~l~~~~~~~~VL~iG~G~G~~~~~l~~~~----~--------------~~~v~~VEid~~vi~~a~~~f~~~~~ 151 (297)
+.|+. ++......+|+|-.||+|++...+.++. . ...+.++|+++.+.++|+-++-+.+.
T Consensus 154 ~~mv~--ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 154 KTIIH--LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHH--HHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred Hhhhh--cccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 44543 3334456799999999999987665431 0 12589999999999999987654321
Q ss_pred CCC-CCCeEEEEcchHHHHhccCCCceEEEEcCCCCCC--C------CCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 152 AFS-DPRLELVINDARAELESRKESYDVIIGDLADPIE--G------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 152 ~~~-~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~--~------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
... ...-.+..+|....-.....+||+|+.++|-... . .+...-...-|++. +.+.|++||.+++-.. .
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~gGr~aiIlP-~ 309 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH-IIETLHPGGRAAVVVP-D 309 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH-HHHHEEEEEEEEEEEE-H
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH-HHHhccccCcEEEEEe-h
Confidence 000 0122344555332212234689999999973211 0 01111123358888 7899999998876541 1
Q ss_pred CCcCCchHHHHHHHHHHhhCC
Q 022451 223 GIFSHTEVFSCIYNTLRQVFK 243 (297)
Q Consensus 223 ~~~~~~~~~~~i~~~l~~~F~ 243 (297)
+..........+++.|-+.+.
T Consensus 310 ~~Lf~~~~~~~iR~~Ll~~~~ 330 (524)
T d2ar0a1 310 NVLFEGGKGTDIRRDLMDKCH 330 (524)
T ss_dssp HHHHCCTHHHHHHHHHHHHEE
T ss_pred HHhhhhhhhHHHHHHHHHcCC
Confidence 111123333556666665543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.38 E-value=0.00059 Score=54.48 Aligned_cols=98 Identities=24% Similarity=0.380 Sum_probs=69.2
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
+|.+|++||+|.-++ +...++.. ..+|++.|.+++.++..+..++. +++....+- +.+.+.-...|+||
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~--------~~~~~~~~~-~~l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS--------RVELLYSNS-AEIETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG--------GSEEEECCH-HHHHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc--------cceeehhhh-hhHHHhhccCcEEE
Confidence 689999999995544 44444444 47999999999999888776642 355555553 23333335689999
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
.-..-|. .++..|.+++. -+.+|||.+++
T Consensus 101 ~aalipG--~~aP~lIt~~m-----v~~Mk~GSVIV 129 (168)
T d1pjca1 101 GAVLVPG--RRAPILVPASL-----VEQMRTGSVIV 129 (168)
T ss_dssp ECCCCTT--SSCCCCBCHHH-----HTTSCTTCEEE
T ss_pred EeeecCC--cccCeeecHHH-----HhhcCCCcEEE
Confidence 9987665 34458888863 46788999886
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.30 E-value=0.00094 Score=54.49 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=72.3
Q ss_pred cCCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCC
Q 022451 99 HHPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKES 175 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~ 175 (297)
...+..+||++|+|. |.++.++++..+..+|+++|.++.-++.|+++-...- .++ ...|..+.+.+ ....
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~---~~~----~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA---DLS----LDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE---ETT----SSSCHHHHHHHHHSSSC
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE---EeC----CCcCHHHHHHHHhCCCC
Confidence 346788999999997 5567777776677899999999999999998732110 000 12344443332 2456
Q ss_pred ceEEEEcCCCCCCCCCc---cCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+++-..-.+....+. ...-+.+.++. +.+.++|+|.+++-.
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~-~~~~~r~gG~v~~~G 140 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNS-LMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHH-HHHHEEEEEEEEECS
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHH-HHHHHhcCCEEEEee
Confidence 99988544322111111 11123467888 689999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.27 E-value=0.00019 Score=57.73 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=66.7
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-c-CCCc
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~-~~~y 176 (297)
..+..+||++|+|+ |..+.++++..+..+|+++|.++.-.+.|+++ +.. .-+.....|..+.+.+ . ...+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l-Ga~------~~i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY-GAT------DILNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH-TCS------EEECGGGSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh-Ccc------ccccccchhHHHHHHHHhhccCc
Confidence 46688999999986 77788888877667899999999999999985 211 0011111233333433 2 3459
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+||-.... + +.+++ +.+.|+|+|.+++-.
T Consensus 98 D~vid~~g~-----~-------~~~~~-a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 98 DRVIMAGGG-----S-------ETLSQ-AVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred ceEEEccCC-----H-------HHHHH-HHHHHhcCCEEEEEe
Confidence 998765432 1 33455 568899999998753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00032 Score=56.37 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-c-CC
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-R-KE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---l~~-~-~~ 174 (297)
.++.+||++|+|+ |.++.+++++.+..+|+++|.++.-.+.|++.-... -+.....|..+. +.+ . ..
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~-------vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL-------TLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE-------EEeccccchHHHHHHHHHhhCCC
Confidence 4578999999874 667778888776669999999999999998852100 011111233222 222 2 34
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+|+||-.... + ..++. +.+.|+++|.+++-.
T Consensus 100 g~Dvvid~vG~-----~-------~~~~~-a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 100 GADFILEATGD-----S-------RALLE-GSELLRRGGFYSVAG 131 (182)
T ss_dssp CEEEEEECSSC-----T-------THHHH-HHHHEEEEEEEEECC
T ss_pred CceEEeecCCc-----h-------hHHHH-HHHHhcCCCEEEEEe
Confidence 59998854321 1 23455 568999999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0017 Score=51.29 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=65.1
Q ss_pred CCCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH---HHhc-cCC
Q 022451 100 HPNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELES-RKE 174 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~---~l~~-~~~ 174 (297)
..+..+||++|+|+.+ ++.++++..+..+|+++|.++.-++.|+++-... -+..-..|..+ .+.. ...
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~-------~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL-------VLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE-------EEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcc-------cccccccccccccccccccCCC
Confidence 3556899999997554 4566677666679999999999999999862110 01111122221 2211 346
Q ss_pred CceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 175 ~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.+|+|+-... . ...++. +.+.++++|.+++-..
T Consensus 97 g~Dvvid~~G-----~-------~~~~~~-a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 97 KPEVTIECTG-----A-------EASIQA-GIYATRSGGTLVLVGL 129 (171)
T ss_dssp CCSEEEECSC-----C-------HHHHHH-HHHHSCTTCEEEECSC
T ss_pred CceEEEeccC-----C-------chhHHH-HHHHhcCCCEEEEEec
Confidence 7999885432 1 245666 6789999999987653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.00089 Score=53.00 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||++|+| .|.++.++++..+ .+|+++|.+++-++.|+++- .. ..+...+-.++.+...+.+|+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a~~lG-a~--------~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKREDAMKMG-AD--------HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTHHHHHHHT-CS--------EEEEGGGTSCHHHHSCSCEEE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHHHHhhccC-Cc--------EEeeccchHHHHHhhhcccce
Confidence 4567899999987 5556777777654 58999999999999999852 11 111111112334445578999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+....... .. . +.. +.+.|+|+|.+++-.
T Consensus 95 vi~~~~~~~--~~--~------~~~-~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 95 IVVCASSLT--DI--D------FNI-MPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEECCSCST--TC--C------TTT-GGGGEEEEEEEEECC
T ss_pred EEEEecCCc--cc--h------HHH-HHHHhhccceEEEec
Confidence 886433221 00 1 122 468999999997653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.01 E-value=0.003 Score=49.59 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++|++||+| ++.+++.+.+.....+|+++|.|++.++.|++.-. +.....+.. .......|+|++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----------~~~~~~~~~---~~~~~~~dlIil 68 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----------IDEGTTSIA---KVEDFSPDFVML 68 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----------CSEEESCGG---GGGGTCCSEEEE
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----------chhhhhhhh---hhhccccccccc
Confidence 479999999 55677777776555789999999999999987521 111111211 112346899998
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEE
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~ 249 (297)
..+. . ...+.+.. +...++++-+++ ..++. .......+.+.+.+.|-..+|..
T Consensus 69 a~p~--------~-~~~~vl~~-l~~~~~~~~ii~-d~~s~----k~~~~~~~~~~~~~~~i~~hPm~ 121 (171)
T d2g5ca2 69 SSPV--------R-TFREIAKK-LSYILSEDATVT-DQGSV----KGKLVYDLENILGKRFVGGHPIA 121 (171)
T ss_dssp CSCH--------H-HHHHHHHH-HHHHSCTTCEEE-ECCSC----CTHHHHHHHHHHGGGEECEEEEC
T ss_pred cCCc--------h-hhhhhhhh-hhcccccccccc-ccccc----cHHHHHHHHHhhccccccccccc
Confidence 8642 1 13467777 788899887665 33221 22334455555666666666653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.0014 Score=51.51 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||++|+|+ |.++.++++..+ .+|+++|.++.-++.++++-... -+.....|..+.+......+|.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASL-------TVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSE-------EEETTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccCccc-------cccccchhHHHHHHHhhcCCcc
Confidence 45678999999874 445677777765 78999999999999999862210 1111123344444333344666
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.+.. .+ +.++. ..+.|+++|.+++-.
T Consensus 97 ~i~~~~-----~~-------~~~~~-~~~~l~~~G~iv~~G 124 (166)
T d1llua2 97 VLVTAV-----SN-------SAFGQ-AIGMARRGGTIALVG 124 (166)
T ss_dssp EEECCS-----CH-------HHHHH-HHTTEEEEEEEEECC
T ss_pred cccccc-----cc-------hHHHH-HHHHhcCCcEEEEEE
Confidence 665532 11 44566 578999999998653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.00 E-value=0.0042 Score=48.75 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=65.2
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cc---hHHHHhc
Q 022451 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----ND---ARAELES 171 (297)
Q Consensus 100 ~~~~~~VL~iG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~----~D---a~~~l~~ 171 (297)
..+..+||++|+| .|.++.++++..+ .+|+++|.++.-++.|++.... ..+.. .| ..+.+..
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~---------~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGAD---------VTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS---------EEEECCTTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCc---------EEEeccccccccchhhhhhhc
Confidence 4567899999987 4556677777765 6899999999999999986421 11111 11 1222322
Q ss_pred -cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 172 -~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
....+|+|+-... .+ ..++. +.+.|+++|.+++-..
T Consensus 94 ~~g~g~D~vid~~g-----~~-------~~~~~-a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 94 AIGDLPNVTIDCSG-----NE-------KCITI-GINITRTGGTLMLVGM 130 (170)
T ss_dssp HSSSCCSEEEECSC-----CH-------HHHHH-HHHHSCTTCEEEECSC
T ss_pred ccccCCceeeecCC-----Ch-------HHHHH-HHHHHhcCCceEEEec
Confidence 3467998875432 11 45566 5789999999987653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.99 E-value=0.00072 Score=53.95 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=66.7
Q ss_pred CCCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCce
Q 022451 100 HPNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD 177 (297)
.++..+||++|+|+-+ ++.++++..+..+|.++|.++.-++.|+++ +.. .-+.....|..+.+++ .+..+|
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT------HVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTSCEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCe------EEEeCCCcCHHHHHHHHcCCCCc
Confidence 4567899999987544 456666655677899999999999999985 211 0011112345555543 345799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-.... .+.++. +.+.++|+|.+++-.
T Consensus 99 ~vid~~G~------------~~~~~~-~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 99 FALESTGS------------PEILKQ-GVDALGILGKIAVVG 127 (174)
T ss_dssp EEEECSCC------------HHHHHH-HHHTEEEEEEEEECC
T ss_pred EEEEcCCc------------HHHHHH-HHhcccCceEEEEEe
Confidence 98865421 245666 678999999998653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.61 E-value=0.0074 Score=47.97 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=66.1
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-h-HHHHhc-cCCC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-A-RAELES-RKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a-~~~l~~-~~~~ 175 (297)
.+++.+||++|+|+ |.++.++++..+..+|+++|.++.-.++|+++-... -+.....| . ...... ....
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATD-------CLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCc-------ccCCccchhhhhhhHhhhhcCC
Confidence 35678999999987 677888888777789999999999999999962211 00001111 1 111211 3467
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCC-cEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gvl~~~~ 219 (297)
+|+++--.- . .+.++. ..+.|+++ |.+++-.
T Consensus 99 ~d~vie~~G-----~-------~~~~~~-a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 99 VDYSLDCAG-----T-------AQTLKA-AVDCTVLGWGSCTVVG 130 (174)
T ss_dssp BSEEEESSC-----C-------HHHHHH-HHHTBCTTTCEEEECC
T ss_pred CcEEEEecc-----c-------chHHHH-HHHHhhcCCeEEEecC
Confidence 999985432 1 245666 67899996 9997754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.54 E-value=0.005 Score=48.54 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cc-hHHHHhcc-CCC
Q 022451 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--ND-ARAELESR-KES 175 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~--~D-a~~~l~~~-~~~ 175 (297)
.+...||++|+|+.++ +.++++..+..+|+++|.+++-++.+++.... .++. .| ....++.. ...
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~----------~~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD----------HVVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS----------EEEETTSCHHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc----------eeecCcccHHHHHHHhhCCCC
Confidence 5678899999876554 45666655677999999999999999986321 1111 22 23333332 356
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|+-.... ...++. ..+.|+++|.+++-.
T Consensus 101 ~d~vid~~g~------------~~~~~~-a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 101 VNVAMDFVGS------------QATVDY-TPYLLGRMGRLIIVG 131 (172)
T ss_dssp EEEEEESSCC------------HHHHHH-GGGGEEEEEEEEECC
T ss_pred ceEEEEecCc------------chHHHH-HHHHHhCCCEEEEEe
Confidence 9988865431 245676 689999999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.52 E-value=0.002 Score=50.77 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcc-c-hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCC
Q 022451 100 HPNPKTIFIMGG-G-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~-G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~ 175 (297)
..++.+||++|+ | .|.++..+++..+..+|+++|.++.-.+.++++-... .+.....|..+.+.+ ..+.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-------~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-------VINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-------EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-------eeccCCcCHHHHHHHHhhccc
Confidence 456789999996 3 4555666666556679999999999999999852110 011111233343332 2456
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
||+|+-.... .+.++. +.+.|+|+|.+++-.
T Consensus 98 ~d~vid~~g~------------~~~~~~-a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 98 VDAVIDLNNS------------EKTLSV-YPKALAKQGKYVMVG 128 (170)
T ss_dssp EEEEEESCCC------------HHHHTT-GGGGEEEEEEEEECC
T ss_pred chhhhccccc------------chHHHh-hhhhcccCCEEEEec
Confidence 9988854321 134455 578999999997653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.44 E-value=0.0048 Score=49.13 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=62.3
Q ss_pred CCCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHH-h-ccCCC
Q 022451 100 HPNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAEL-E-SRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D-a~~~l-~-~~~~~ 175 (297)
.++...||++|+|+.+ .+.++++..+..+|+++|.+++-+++|+++-... -++....| ..+.+ + .....
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~-------~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE-------CISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcE-------EECccccchHHHHHHHHhcccc
Confidence 3567889999998655 4566777777789999999999999999974311 01111112 11222 2 13467
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+++-.... + ..+... +...++.+|.+++-.
T Consensus 100 ~d~vi~~~g~-----~------~~~~~a-~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 100 VGYTFEVIGH-----L------ETMIDA-LASCHMNYGTSVVVG 131 (176)
T ss_dssp CCEEEECSCC-----H------HHHHHH-HTTSCTTTCEEEECS
T ss_pred ceEEEEeCCc-----h------HHHHHH-HHHhhcCCeEEEEEE
Confidence 9988877532 1 122333 444556668887654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.34 E-value=0.0083 Score=48.23 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=64.9
Q ss_pred CCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-CCC-CCeEEEEcch-----------HH
Q 022451 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-FSD-PRLELVINDA-----------RA 167 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~~~-~rv~~~~~Da-----------~~ 167 (297)
+|.+||+||+|..++ +...+... ..+|+++|+++..++..++.++..-.. ... ...+-..+.+ .+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 578999999996554 44444433 479999999999999998875422100 000 0011000111 11
Q ss_pred HHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 168 ~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
.+...-.+.|+||.-..-|. .++..|.+++ +-+.+|||.+++
T Consensus 107 ~l~~~l~~aDlVI~talipG--~~aP~lit~~-----mv~~Mk~GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPG--KPAPVLITEE-----MVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTT--SCCCCCSCHH-----HHTTSCTTCEEE
T ss_pred HHHHHHHhhhhheeeeecCC--cccceeehHH-----HHHhcCCCcEEE
Confidence 22222356999999988775 3345788876 346789999886
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.02 E-value=0.0066 Score=48.16 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=61.2
Q ss_pred CCCCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc--hHHHHh-ccCCC
Q 022451 100 HPNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND--ARAELE-SRKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~D--a~~~l~-~~~~~ 175 (297)
..+..+||++|+|+.++ +.++++..+..+|+++|+++.-++.|+++-... -+.....| ..+... .....
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~-------~i~~~~~d~~~~~~~~~~~~~G 97 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE-------CLNPKDYDKPIYEVICEKTNGG 97 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE-------EECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE-------EEcCCCchhHHHHHHHHhcCCC
Confidence 35678999999986554 566666666789999999999999999862211 01111122 122222 23467
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|+-.... + +.++..+...++++|.+++-.
T Consensus 98 ~d~vid~~g~-----~-------~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 98 VDYAVECAGR-----I-------ETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp BSEEEECSCC-----H-------HHHHHHHHTBCTTTCEEEECC
T ss_pred CcEEEEcCCC-----c-------hHHHHHHHHHHHhcCceEEEE
Confidence 9999976431 1 233331344455668887654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.015 Score=45.45 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=62.0
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
.+++.+||++|+|+ |.++.++++..+ .++++++.++.-.+.+++.-. . .++...-........+.+|+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~lGa---------d-~~i~~~~~~~~~~~~~~~D~ 96 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKALGA---------D-EVVNSRNADEMAAHLKSFDF 96 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHTC---------S-EEEETTCHHHHHTTTTCEEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhccCC---------c-EEEECchhhHHHHhcCCCce
Confidence 46789999999864 556777777764 567789999998888887421 1 12222212223334467999
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++-....+. -++. ..+.|+++|.+++-.
T Consensus 97 vid~~g~~~------------~~~~-~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 97 ILNTVAAPH------------NLDD-FTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEECCSSCC------------CHHH-HHTTEEEEEEEEECC
T ss_pred eeeeeecch------------hHHH-HHHHHhcCCEEEEec
Confidence 887653221 1234 568999999998764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0072 Score=47.64 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++-. . .-+.....|..+.+.. ..+.+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~~Ga-~------~vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQNGA-H------EVFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTC-S------EEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCEEEEEeccccccccccccccccC-cccccccccccccccccccCc-c------cccccccccHHHHhhhhhccCCc
Confidence 46788999995 46667778888764 578888889988888887521 1 1111112344444433 34669
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-.. + .+.++. ..++|+|+|.++.-
T Consensus 99 d~v~d~~------g-------~~~~~~-~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 99 DIIIEML------A-------NVNLSK-DLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEEESC------H-------HHHHHH-HHHHEEEEEEEEEC
T ss_pred eEEeecc------c-------HHHHHH-HHhccCCCCEEEEE
Confidence 9888542 1 145666 57899999999865
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.81 E-value=0.045 Score=42.26 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred eEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||+| ++.+++.+.+. ..+|+++|.+++.++.+++.-. +.....+ .+.+ +..|+|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~----------~~~~~~~-~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL----------VDEAGQD-LSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS----------CSEEESC-GGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc----------cceeeee-cccc----ccccccccc
Confidence 68999999 66777777764 4689999999999988876411 1111122 1222 468999987
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEE
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~ 216 (297)
.+. . ...+.++. +...|+++-+++
T Consensus 65 vp~--------~-~~~~vl~~-l~~~l~~~~iv~ 88 (165)
T d2f1ka2 65 TPI--------Q-LILPTLEK-LIPHLSPTAIVT 88 (165)
T ss_dssp SCH--------H-HHHHHHHH-HGGGSCTTCEEE
T ss_pred CcH--------h-hhhhhhhh-hhhhccccccee
Confidence 541 1 24577888 788888887664
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.81 E-value=0.004 Score=48.59 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 100 HPNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+..+||+.|+|+-+ ++..+++..+ .+|++++.++.-.+.++++-...- +.....|...-++.....+|.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g-~~v~~~~~~~~r~~~~k~~Ga~~~-------~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLV-------VNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCSEE-------ECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC-CeEeccCCCHHHhhhhhhcCccee-------cccccchhhhhcccccCCCce
Confidence 4567899999987544 4566666654 589999999999999988521110 000112444444443344566
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
++.+... .+.+.. ..++|+|+|.+++..
T Consensus 97 ~v~~~~~------------~~~~~~-a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 97 AVVTAVS------------KPAFQS-AYNSIRRGGACVLVG 124 (168)
T ss_dssp EEESSCC------------HHHHHH-HHHHEEEEEEEEECC
T ss_pred EEeecCC------------HHHHHH-HHHHhccCCceEecc
Confidence 6666431 144566 678999999998764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.47 E-value=0.19 Score=42.36 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=86.7
Q ss_pred eEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCC
Q 022451 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~ 184 (297)
+|+++-||.|++..-+.+. +...+.++|+|+...++.+.+++ -.++.+|..+.-...-.+.|+|+..++
T Consensus 2 k~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCCHhHcccccEEeeccc
Confidence 6999999988887665543 35667799999999999888763 145678877653333457999999877
Q ss_pred -CCCC-CCCccCc------ccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEecCccC
Q 022451 185 -DPIE-GGPCYKL------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA 256 (297)
Q Consensus 185 -~~~~-~~p~~~L------~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~vp~~~ 256 (297)
.+++ ++....+ +-.++++. -+.++|.-+++=|+..-........+..++..+.+.-=.+.........|+
T Consensus 71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~--i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vlna~~~G 148 (324)
T d1dcta_ 71 CQSWSEGGSLRGIDDPRGKLFYEYIRI--LKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYG 148 (324)
T ss_dssp CTTTSSSSCCCCSSSHHHHHHHHHHHH--HHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEEGGGGT
T ss_pred ccccccccccccccccccchHHHHHHH--HHhhCCceeeccccccccccccchhhHHHHhHHhhCCCccceeeeeccccc
Confidence 2321 1110011 11244453 367899877776652110112344556666666543212222222222333
Q ss_pred ---C-ceeEEEEecCC
Q 022451 257 ---D-TWGWIMVSIYN 268 (297)
Q Consensus 257 ---~-~~~~~~as~~~ 268 (297)
. ...|++|.+++
T Consensus 149 vPQ~R~R~fiv~~r~~ 164 (324)
T d1dcta_ 149 VAQDRKRVFYIGFRKE 164 (324)
T ss_dssp CSBCCEEEEEEEEEGG
T ss_pred CchhhceeeEeeecCC
Confidence 1 24567777654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.40 E-value=0.16 Score=43.13 Aligned_cols=152 Identities=9% Similarity=0.053 Sum_probs=92.3
Q ss_pred CCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 102 ~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+-+||+|-||.|++..-+.+. +...|.++|+|+..+++.+.+++.. .++|..+.-...-...|+|+.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~-----------~~~Di~~~~~~~~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----------PEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----------CBSCGGGSCGGGSCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC-----------CcCchhcCchhhcceeeeeec
Confidence 4578999999999988877664 4667788999999999999987521 136766654333457999999
Q ss_pred cCC-CCCC-C-------CCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEEEEec
Q 022451 182 DLA-DPIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHI 252 (297)
Q Consensus 182 D~~-~~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~~~~v 252 (297)
.++ .+.+ + .+...|+ .++++. -+.++|.=+++=|+..-........+..+.+.|++.-=.+.......
T Consensus 78 gpPCq~fS~ag~~~g~~d~r~~l~-~~~~~~--i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a 154 (327)
T d2c7pa1 78 GFPCQAFSISGKQKGFEDSRGTLF-FDIARI--VREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNA 154 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHH-HHHHHH--HHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEG
T ss_pred ccccchhhhhhhhcCCcccchhHH-HHHHHH--HhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecH
Confidence 887 2321 1 1111233 356664 36789987766564211011234466777777776522233222222
Q ss_pred CccC---C-ceeEEEEecCC
Q 022451 253 PSFA---D-TWGWIMVSIYN 268 (297)
Q Consensus 253 p~~~---~-~~~~~~as~~~ 268 (297)
..|+ . ...|++|.+.+
T Consensus 155 ~~~GvPQ~R~R~fivg~r~~ 174 (327)
T d2c7pa1 155 LDYGIPQKRERIYMICFRND 174 (327)
T ss_dssp GGGTCSBCCEEEEEEEEBGG
T ss_pred HHcCCCchhhhheeeeeccC
Confidence 2343 1 23567777654
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=95.31 E-value=0.15 Score=43.13 Aligned_cols=120 Identities=11% Similarity=0.071 Sum_probs=81.7
Q ss_pred EccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---cCCCceEEEEcCCC
Q 022451 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLAD 185 (297)
Q Consensus 109 iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~---~~~~yD~Ii~D~~~ 185 (297)
.=.|+-.++..+++ +..++..+|+.|.-.+..+++|. .++|++++..|+.+.+.. ..++==+|++|++-
T Consensus 89 ~YPGSP~ia~~llR--~~Drl~l~ELHp~e~~~L~~~~~------~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpY 160 (271)
T d2oo3a1 89 YYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPH------FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 160 (271)
T ss_dssp EEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCC------TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred cCCCCHHHHHHhCC--CCCceEEeecCHHHHHHHHHHhc------cCCCceEEcCchHHHHHhhCCCCCCceEEEecCCc
Confidence 44678888888887 35799999999999999998875 358999999999998865 34556699999863
Q ss_pred CCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCce
Q 022451 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (297)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v 245 (297)
.. ..+.---.+.+.. +.++ =|.|+++++. | ....+....+.+.+++.-+..
T Consensus 161 E~---k~ey~~v~~~l~~-a~kr-~~~g~~~iWY--P--i~~~~~~~~~~~~l~~~~~k~ 211 (271)
T d2oo3a1 161 ER---KEEYKEIPYAIKN-AYSK-FSTGLYCVWY--P--VVNKAWTEQFLRKMREISSKS 211 (271)
T ss_dssp CS---TTHHHHHHHHHHH-HHHH-CTTSEEEEEE--E--ESSHHHHHHHHHHHHHHCSSE
T ss_pred CC---HHHHHHHHHHHHH-HHHh-CCCceEEEEe--e--ccCcHHHHHHHHHHHhcCccc
Confidence 22 1111001122222 1122 2689999985 3 345667788888888775543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.13 E-value=0.038 Score=43.00 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=63.1
Q ss_pred CCCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHhc-cCCC
Q 022451 100 HPNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELES-RKES 175 (297)
Q Consensus 100 ~~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~l~~-~~~~ 175 (297)
..+..+||+.|+|+ |.++.++++..+...|++++.++.-.+.++++=... -+.. ...+....++. ....
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~-------~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE-------CINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE-------EECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE-------EEeCCchhhHHHHHHHHHcCCC
Confidence 45678999998864 345666777666789999999999999999852110 0000 01223333333 3457
Q ss_pred ceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 176 yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+|+-..- . ...++. +...+++||.+++..
T Consensus 99 ~D~vid~~G------~------~~~~~~-~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 99 VDYSFECIG------N------VKVMRA-ALEACHKGWGVSVVV 129 (176)
T ss_dssp BSEEEECSC------C------HHHHHH-HHHTBCTTTCEEEEC
T ss_pred CcEeeecCC------C------HHHHHH-HHHhhcCCceeEEEE
Confidence 999986542 1 145566 577888887765543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.11 E-value=0.064 Score=39.73 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=62.8
Q ss_pred CeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhc-cCCCceEEE
Q 022451 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELES-RKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~-~~~~yD~Ii 180 (297)
|+++++|+ |..+.++.+......|.+||.|+...+..+. ..+.++.+|+. +.|++ .-++.+.++
T Consensus 1 kHivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi 67 (129)
T d2fy8a1 1 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----------SGANFVHGDPTRVSDLEKANVRGARAVI 67 (129)
T ss_dssp CCEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----------TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred CEEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----------cCccccccccCCHHHHHHhhhhcCcEEE
Confidence 57888876 5566666665455679999999999887654 34788999984 44544 236788888
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+...+.. .. .+.-. ..+.++|...+++...
T Consensus 68 ~~~~~d~-----~n----~~~~~-~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 68 VNLESDS-----ET----IHCIL-GIRKIDESVRIIAEAE 97 (129)
T ss_dssp ECCSSHH-----HH----HHHHH-HHHHHCSSSCEEEECS
T ss_pred Eeccchh-----hh----HHHHH-HHHHHCCCceEEEEEc
Confidence 8765321 11 12222 3567899988877754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.03 E-value=0.019 Score=45.12 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||+.|+ |.|..+.+++++.+ .++.++.-+++-.+.++++.... -+.....|..+.+.+ ..+.+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~Ga~~-------vi~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRLGVEY-------VGDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTTCCSE-------EEETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccccccc-------cccCCccCHHHHHHHHhCCCCE
Confidence 45678999874 45667788887764 57777777888888888752110 011122345555544 24679
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+.-.. . +.++. +.++|+++|.++.-
T Consensus 96 d~v~d~~g------~-------~~~~~-~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 96 DVVLNSLA------G-------EAIQR-GVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEECCC------T-------HHHHH-HHHTEEEEEEEEEC
T ss_pred EEEEeccc------c-------hHHHH-HHHHhcCCCEEEEE
Confidence 99995432 1 44566 57899999999864
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.16 Score=43.27 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=84.6
Q ss_pred CCeEEEEccchhHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEE
Q 022451 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~I 179 (297)
|-+|++|.||.|++..-+.+. ....-|.++|+|+..++..+.+++ ...++.+|..+.... .....|+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---------~~~~~~~di~~~~~~~~~~~~~Dll 72 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---------HTQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---------CCCcccCchhhCCHhHcCCCCccEE
Confidence 568999999999877655442 112346799999999999888763 344566776543211 12368999
Q ss_pred EEcCC-CCCC-CC-------CccCcccHHHHHHHHcccC--CCCcEEEEecCCCCCcCCchHHHHHHHHHHhhCCceeEE
Q 022451 180 IGDLA-DPIE-GG-------PCYKLYTKSFYEFVVKPRL--NPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (297)
Q Consensus 180 i~D~~-~~~~-~~-------p~~~L~t~ef~~~~~~~~L--~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~F~~v~~~ 248 (297)
+..++ .+++ ++ +...|+ .++++. ++ .+ +|.-+++=|+ ++ .........+.+.|++..=.+...
T Consensus 73 ~ggpPCq~fS~ag~~~~~~d~r~~l~-~~~~~~-i~-~~~~kPk~~i~ENV--~~-l~~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T d1g55a_ 73 LMSPPCQPFTRIGRQGDMTDSRTNSF-LHILDI-LP-RLQKLPKYILLENV--KG-FEVSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp EECCC------------------CHH-HHHHHH-GG-GCSSCCSEEEEEEE--TT-GGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred Eeeccccccccccccccccccccccc-chhhhh-Hh-hhcCCCceeeeecc--CC-cccchhhHHHHhhhhcccccccee
Confidence 98887 2221 11 111232 456665 43 34 6876555443 32 233445667777777653223222
Q ss_pred EEecCccC---C-ceeEEEEecCC
Q 022451 249 SAHIPSFA---D-TWGWIMVSIYN 268 (297)
Q Consensus 249 ~~~vp~~~---~-~~~~~~as~~~ 268 (297)
......|+ . ...|+++.+..
T Consensus 147 vlna~dyGvPQ~R~Rvfivg~r~~ 170 (343)
T d1g55a_ 147 LLSPTSLGIPNSRLRYFLIAKLQS 170 (343)
T ss_dssp EECGGGGTCSCCCCEEEEEEEESS
T ss_pred eeeccccCCcccceeEEEEEEeCC
Confidence 22223343 1 24577777665
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.88 E-value=0.1 Score=38.76 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=55.8
Q ss_pred eEEEEccch-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH--HHHhcc-CCCceEE
Q 022451 105 TIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESYDVI 179 (297)
Q Consensus 105 ~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~--~~l~~~-~~~yD~I 179 (297)
+|+++|+|. | .+++.|.+. ..+|++||.||+.++.+++.+ .+.++.+|+. +.+... -+..|++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~----------~~~vi~Gd~~~~~~l~~~~i~~a~~v 69 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEI----------DALVINGDCTKIKTLEDAGIEDADMY 69 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC----------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhh----------hhhhccCcccchhhhhhcChhhhhhh
Confidence 689999862 2 234444443 468999999999988776532 3568889985 455543 3678988
Q ss_pred EEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
+.-..+.. ..+ +... ..+.+.+.-+++.
T Consensus 70 v~~t~~d~-----~N~----~~~~-~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 70 IAVTGKEE-----VNL----MSSL-LAKSYGINKTIAR 97 (132)
T ss_dssp EECCSCHH-----HHH----HHHH-HHHHTTCCCEEEE
T ss_pred cccCCcHH-----HHH----HHHH-HHHHcCCceEEEE
Confidence 87543311 111 2222 3456788766543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.64 E-value=0.028 Score=44.73 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=59.7
Q ss_pred CeEEEEc--cchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEE
Q 022451 104 KTIFIMG--GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (297)
Q Consensus 104 ~~VL~iG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii 180 (297)
+.||+.| +|-|..+.++++..+...|+++..+++-.....+.++.. .-+.....|..+.++. .++.+|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad------~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD------AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS------EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce------EEeeccchhHHHHHHHHhccCceEEE
Confidence 6799987 467788999999777777887766655544433322211 1122223345555554 456799997
Q ss_pred EcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|.. + .+.++. ..++|+++|.++..
T Consensus 106 -D~v-----G-------g~~~~~-~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 106 -DNV-----G-------GDISNT-VISQMNENSHIILC 129 (187)
T ss_dssp -ESS-----C-------HHHHHH-HHTTEEEEEEEEEC
T ss_pred -ecC-----C-------chhHHH-HhhhccccccEEEe
Confidence 322 1 145566 67999999999764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.53 E-value=0.092 Score=40.69 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=62.8
Q ss_pred CeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--c-CCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--K-EAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~--~-~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
++|.+||+|.-+. +..|.+. ..+|+++|.++.-++..++.-... . ......+...+..|..+.+ +..|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~ 75 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADV 75 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCE
Confidence 6899999996554 3444443 468999999999888877642111 0 0000112223445555555 35899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|++-.+. ....+.+++ ++.+|+++-+++..
T Consensus 76 iii~v~~---------~~~~~~~~~-i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 76 ILIVVPA---------IHHASIAAN-IASYISEGQLIILN 105 (184)
T ss_dssp EEECSCG---------GGHHHHHHH-HGGGCCTTCEEEES
T ss_pred EEEEEch---------hHHHHHHHH-hhhccCCCCEEEEe
Confidence 9987532 124578888 79999999877654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.51 E-value=0.076 Score=41.35 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 022451 100 HPNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL 146 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f 146 (297)
.++..+||++|+|+++ ++..+++.....+|.++|.++.-.+.++++-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 3566889999987555 4555566666789999999999999999863
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.86 E-value=0.057 Score=45.64 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
.+++.-|||.-+|+|+++.++.+. ..+.+++|+|++.+++|++++.
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence 467789999999999999999986 4789999999999999999875
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.17 Score=39.26 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..+.++||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++.- . ..-+-..|....+. ..+.+|
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~~~~~~lG-a--------~~~i~~~~~~~~~~-~~~g~D 93 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKLALPLALG-A--------EEAATYAEVPERAK-AWGGLD 93 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGSHHHHHTT-C--------SEEEEGGGHHHHHH-HTTSEE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccc-cccccccccccccccccccc-c--------ceeeehhhhhhhhh-cccccc
Confidence 456788999884 34567778888764 58999999998888888741 1 11122234333333 346799
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
+|+ |.. ++ .+.. ..++|+|+|.++..
T Consensus 94 ~v~-d~~-----G~--------~~~~-~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVL-EVR-----GK--------EVEE-SLGLLAHGGRLVYI 119 (171)
T ss_dssp EEE-ECS-----CT--------THHH-HHTTEEEEEEEEEC
T ss_pred ccc-ccc-----ch--------hHHH-HHHHHhcCCcEEEE
Confidence 886 432 21 1244 46899999999764
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.78 E-value=0.2 Score=39.11 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=43.2
Q ss_pred CCeEEEEccchhHH---HHHHHhcCC---CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 103 PKTIFIMGGGEGST---AREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 103 ~~~VL~iG~G~G~~---~~~l~~~~~---~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
..+|.+||+|+.+. ...++.+.+ ..+|..+|+|++-++...+.+.........+.--....|-.+.++ -.
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----~A 78 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----DV 78 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----SC
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----CC
Confidence 35799999986532 233333222 358999999999876433322211000011222334556666553 37
Q ss_pred eEEEEcCC
Q 022451 177 DVIIGDLA 184 (297)
Q Consensus 177 D~Ii~D~~ 184 (297)
|+|+.-.-
T Consensus 79 D~Vvitag 86 (167)
T d1u8xx1 79 DFVMAHIR 86 (167)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99988764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.045 Score=42.74 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=62.3
Q ss_pred CCCCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCc
Q 022451 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~y 176 (297)
.+.++||+.|+| .|..+.++++.. ..+|++++.+++-.+.+++. +.. .-+.....|..+.+++ ....+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l-Ga~------~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GAW------QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TCS------EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc-CCe------EEEECCCCCHHHHHHHHhCCCCe
Confidence 456899998665 456778888765 46899999999999999875 211 1111122345555543 24578
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-- .. . +.+.. ....|+++|.+++..
T Consensus 99 d~v~d~-~g-----~-------~~~~~-~~~~l~~~G~~v~~g 127 (179)
T d1qora2 99 RVVYDS-VG-----R-------DTWER-SLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEEEEC-SC-----G-------GGHHH-HHHTEEEEEEEEECC
T ss_pred EEEEeC-cc-----H-------HHHHH-HHHHHhcCCeeeecc
Confidence 976643 21 1 22345 578999999887654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.47 E-value=0.033 Score=45.81 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=41.0
Q ss_pred EEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccC--------cccHHHHHHHHcccCCCCcEEEEec
Q 022451 159 ELVINDARAELES-RKESYDVIIGDLADPIEGGPCYK--------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 159 ~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~--------L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+++.+|+.+.|+. .++.+|+|+.|+|-.....-... -+..+++++ +.+.|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e-~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDK-VLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHH-hhhccccCccccccc
Confidence 5899999999987 45789999999872110000001 112356777 789999999887663
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.23 Score=38.68 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
-..|+|+++|.|.=+ +++.+.. . ..+|+++|+||.- ..+.... -.++. ...+ ....-|+
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg-~-G~~V~v~e~dp~~--al~A~~d---------G~~v~--~~~~----a~~~adi 82 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRG-F-GARVIITEIDPIN--ALQAAME---------GYEVT--TMDE----ACQEGNI 82 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-T-TCEEEEECSCHHH--HHHHHHT---------TCEEC--CHHH----HTTTCSE
T ss_pred ecCCEEEEeccccccHHHHHHHHh-C-CCeeEeeecccch--hHHhhcC---------ceEee--ehhh----hhhhccE
Confidence 468999999998432 3343333 3 5799999999943 2222221 11111 1122 2345788
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+.-.-. .+..+.+-|+ .+| +|.++.|.++.
T Consensus 83 vvtaTGn-------~~vI~~eh~~-----~MK-dgaIL~N~Ghf 113 (163)
T d1li4a1 83 FVTTTGC-------IDIILGRHFE-----QMK-DDAIVCNIGHF 113 (163)
T ss_dssp EEECSSC-------SCSBCHHHHT-----TCC-TTEEEEECSSS
T ss_pred EEecCCC-------ccchhHHHHH-----hcc-CCeEEEEeccc
Confidence 8876432 2445655444 555 45666787654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.29 E-value=0.087 Score=39.00 Aligned_cols=69 Identities=29% Similarity=0.379 Sum_probs=45.5
Q ss_pred CeEEEEccchh-H-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcc-CCCceE
Q 022451 104 KTIFIMGGGEG-S-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDV 178 (297)
Q Consensus 104 ~~VL~iG~G~G-~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~~-~~~yD~ 178 (297)
|+++++|+|.= . +++.|.+. ..+|+++|.|++.++.++.. ...++.+|+.+ .+... -.+.|.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~-----------~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASY-----------ATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTT-----------CSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHh-----------CCcceeeecccchhhhccCCccccE
Confidence 57899998732 2 34555554 35799999999998877643 23567788743 33332 256898
Q ss_pred EEEcCCC
Q 022451 179 IIGDLAD 185 (297)
Q Consensus 179 Ii~D~~~ 185 (297)
+++..++
T Consensus 68 vi~~~~~ 74 (134)
T d2hmva1 68 VIVAIGA 74 (134)
T ss_dssp EEECCCS
T ss_pred EEEEcCc
Confidence 8887664
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.22 E-value=0.088 Score=43.02 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL 146 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f 146 (297)
..++.-|||--+|+|+++.++.+. ..+.+++|+|++.+++|++.+
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 356788999999999999999986 478999999999999999875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.19 E-value=0.022 Score=47.51 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=43.7
Q ss_pred CeEEEEcchHHHHhc-cCCCceEEEEcCCCCCC----CCCccC-cccHHHHHHHHcccCCCCcEEEEecCC
Q 022451 157 RLELVINDARAELES-RKESYDVIIGDLADPIE----GGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 157 rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~----~~p~~~-L~t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
+-.++++|+.+.|+. .++..|+|+.|+|-... ...... -+..+++.+ +.+.|+|+|.++++...
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e-~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAE-AERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHH-HHHHEEEEEEEEEEECS
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHH-HHHHhCCCccEEEecCc
Confidence 346788999999987 45789999999972110 000000 113456777 78999999999998643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=93.00 E-value=0.53 Score=36.10 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=60.3
Q ss_pred CCCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCH-HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCc
Q 022451 100 HPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE-EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~-~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~y 176 (297)
....++||+||.|.=+ ++..+... +..+++++--+. ...++++++ +.. ..-..|..+.+ ..|
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~-~~~---------~~~~~~~~~~l----~~~ 85 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL-GGE---------AVRFDELVDHL----ARS 85 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH-TCE---------ECCGGGHHHHH----HTC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhh-hcc---------cccchhHHHHh----ccC
Confidence 3578899999986322 23444544 467899998884 444566653 211 01123333443 359
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+||.....+ ..+++.+.++..++.+-.....+++-...|
T Consensus 86 Divi~atss~------~~ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 86 DVVVSATAAP------HPVIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp SEEEECCSSS------SCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred CEEEEecCCC------CccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 9999886532 356788888762333333345677776555
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.97 E-value=0.16 Score=39.66 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCCCeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hc-cCCCc
Q 022451 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ES-RKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l-~~-~~~~y 176 (297)
.+.++||+.|+++ |..+.++++..+ .+|+++..+++-.+.+++.-... -+.....|..+.+ +. ..+.+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~Ga~~-------vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQIGFDA-------AFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTTCSE-------EEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhhhhhh-------hcccccccHHHHHHHHhhcCCC
Confidence 5678999987754 556788888764 68999999999888888752110 0111112222222 22 34669
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEe
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~ 218 (297)
|+|+-.. + .+.++. ..++|+++|.++..
T Consensus 100 d~v~D~v------G-------~~~~~~-~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 100 DCYFDNV------G-------GEFLNT-VLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEESS------C-------HHHHHH-HGGGEEEEEEEEEC
T ss_pred ceeEEec------C-------chhhhh-hhhhccCCCeEEee
Confidence 9987432 1 256777 78999999999875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.85 E-value=0.082 Score=43.83 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~ 148 (297)
..++.-|||--+|+|+++.++.+. ..+.+++|+||...++|++++..
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHH
T ss_pred cCCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 467788999999999999999987 47999999999999999998763
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.80 E-value=0.048 Score=43.21 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-ccCCCce
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~-~~~~~yD 177 (297)
++..+||+-|+ |-|..+.++++.. ..+|+++--+++-.+.+++.-... +--+..+..+.++ ..++.||
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~--------vi~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKE--------VLAREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSE--------EEECC---------CCSCCEE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccce--------eeecchhHHHHHHHhhccCcC
Confidence 44678999875 4556788888876 467888888888889998752111 1001111111122 2356899
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
+|+-... + +.+.. ..++|+++|.++.-.
T Consensus 101 ~vid~vg-----g--------~~~~~-~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 101 AAVDPVG-----G--------RTLAT-VLSRMRYGGAVAVSG 128 (176)
T ss_dssp EEEECST-----T--------TTHHH-HHHTEEEEEEEEECS
T ss_pred EEEEcCC-----c--------hhHHH-HHHHhCCCceEEEee
Confidence 8775432 1 22444 568999999998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.016 Score=44.45 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=37.4
Q ss_pred HHHHhcCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEE--ECCHHHHHHHHhhh
Q 022451 94 HPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYL 146 (297)
Q Consensus 94 ~~~l~~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~V--Eid~~vi~~a~~~f 146 (297)
.+|+.....+++||++|+|.-+.. +.+++. ..+|++| |+++++...+.+..
T Consensus 4 ~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~~~~~l~~~~~~~~ 58 (150)
T d1kyqa1 4 SLQLAHQLKDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDLHKSIIPKFGKFI 58 (150)
T ss_dssp CEEEEECCTTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEECTTHHHHHCGGG
T ss_pred cchhheeeCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHhcc
Confidence 456666678999999999876553 344443 4688888 78899988887754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.12 E-value=0.056 Score=39.25 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=45.7
Q ss_pred HHHHhcCCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 022451 94 HPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (297)
Q Consensus 94 ~~~l~~~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l 169 (297)
++|+...-.+++||++|+|.=+. ++.+++. ..+|++++.+ ++....++ ..+++++..+...
T Consensus 3 ~~Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~-- 67 (113)
T d1pjqa1 3 HLPIFCQLRDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTFIPQFTVWAN-----------EGMLTLVEGPFDE-- 67 (113)
T ss_dssp CEEEEECCBTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSCCHHHHHHHT-----------TTSCEEEESSCCG--
T ss_pred ccceEEEeCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCChHHHHHHh-----------cCCceeeccCCCH--
Confidence 34666667889999999986554 3444553 4678877554 34433332 2466766654322
Q ss_pred hccCCCceEEEEcCCC
Q 022451 170 ESRKESYDVIIGDLAD 185 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~ 185 (297)
..-..+|+|+....+
T Consensus 68 -~dl~~~~lv~~at~d 82 (113)
T d1pjqa1 68 -TLLDSCWLAIAATDD 82 (113)
T ss_dssp -GGGTTCSEEEECCSC
T ss_pred -HHhCCCcEEeecCCC
Confidence 112458888887543
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.05 E-value=1.1 Score=32.92 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=49.7
Q ss_pred CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHH
Q 022451 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204 (297)
Q Consensus 125 ~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~ 204 (297)
...+|.+||=|+......++.+...+ -++ ....|+.+.++.-...||+|++|..-|...+ .++.+.
T Consensus 6 ~g~rILvVDD~~~~~~~l~~~L~~~G-----~~v-~~a~~g~eal~~l~~~~dlillD~~mP~~dG-------~el~~~- 71 (134)
T d1dcfa_ 6 TGLKVLVMDENGVSRMVTKGLLVHLG-----CEV-TTVSSNEECLRVVSHEHKVVFMDVCMPGVEN-------YQIALR- 71 (134)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHCCTTCSEEEEECCSSTTTT-------THHHHH-
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHhhcCCCeEEEEeccCCCch-------HHHHHH-
Confidence 45799999999999999888876432 133 3567888888765678999999987554222 266666
Q ss_pred Hccc
Q 022451 205 VKPR 208 (297)
Q Consensus 205 ~~~~ 208 (297)
+++.
T Consensus 72 ir~~ 75 (134)
T d1dcfa_ 72 IHEK 75 (134)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.89 E-value=0.11 Score=43.84 Aligned_cols=65 Identities=26% Similarity=0.326 Sum_probs=44.5
Q ss_pred CCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCC-ccCcc-------cHHHHHHHHcccCCCCcEEEEecCC
Q 022451 156 PRLELVINDARAELES-RKESYDVIIGDLADPIEGGP-CYKLY-------TKSFYEFVVKPRLNPEGIFVTQAGP 221 (297)
Q Consensus 156 ~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p-~~~L~-------t~ef~~~~~~~~L~pgGvl~~~~~~ 221 (297)
..-+++++|+++.|+. .+++.|+|+.|+|=.....- ..... -.+.+.+ +++.|+|+|.++++...
T Consensus 11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~-~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKV-VNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHH-HHHHEEEEEEEEEEECC
T ss_pred CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHH-HHHhCcccCcccccccc
Confidence 3458999999999977 45789999999872110000 00111 1346777 68999999999988643
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.75 E-value=0.12 Score=39.96 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCCCeEEEEccchhHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 022451 100 HPNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (297)
.++..+||++|+|+++. +..+++.....+|+++|.+++-++.|+++
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 35668899999887554 45455556678999999999999999985
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=1.1 Score=36.83 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HH---
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------EL--- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l--- 169 (297)
+.|.||+.|+++|. +++.+++. ..+|.+++.++.-++.+.+.+.... ...++..+..|..+ ++
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHHH
Confidence 56889999987653 45555554 4689999999988777665544321 12467777887632 22
Q ss_pred hccCCCceEEEEcCC
Q 022451 170 ESRKESYDVIIGDLA 184 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~ 184 (297)
.+.-++.|++|.++.
T Consensus 84 ~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 84 RSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHCCCSEEEECCC
T ss_pred HHhcCCCCEEEeccc
Confidence 222367999999875
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.23 E-value=0.45 Score=34.62 Aligned_cols=71 Identities=20% Similarity=0.362 Sum_probs=48.8
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~ 204 (297)
+|..||=|+.+.+..++++... +..++ ...|+.+.+.. ...+||+|++|..-|. +-..++.+.
T Consensus 3 rILivDD~~~~~~~l~~~L~~~------~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~-------~dG~e~~~~- 68 (123)
T d1dz3a_ 3 KVCIADDNRELVSLLDEYISSQ------PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPH-------LDGLAVLER- 68 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSS-------SCHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC-------CCHHHHHHH-
Confidence 6899999999999999987633 33443 35577666543 2357999999987543 234478888
Q ss_pred HcccCCCC
Q 022451 205 VKPRLNPE 212 (297)
Q Consensus 205 ~~~~L~pg 212 (297)
+++.....
T Consensus 69 ir~~~~~~ 76 (123)
T d1dz3a_ 69 IRAGFEHQ 76 (123)
T ss_dssp HHHHCSSC
T ss_pred HHhcCCCC
Confidence 67655433
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=90.30 E-value=0.82 Score=32.91 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=50.8
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
++|.+||=|+.+.+..++.+...+ =++ ....|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g-----~~v-~~a~~g~eal~~~~~~~~dlillD~~mP~-------~~G~el~~~-l 67 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEG-----YQT-FQAANGLQALDIVTKERPDLVLLDMKIPG-------MDGIEILKR-M 67 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHHHHHCCSEEEEESCCTT-------CCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC-----CEE-EEeCCHHHHHHHHHhCCCCEEEEeccCCC-------CCHHHHHHH-H
Confidence 589999999999999999886432 122 345677766543 2357999999987554 223477887 6
Q ss_pred cccCCCCcEEEEe
Q 022451 206 KPRLNPEGIFVTQ 218 (297)
Q Consensus 206 ~~~L~pgGvl~~~ 218 (297)
++ ..++--+++-
T Consensus 68 r~-~~~~~pvi~l 79 (119)
T d1peya_ 68 KV-IDENIRVIIM 79 (119)
T ss_dssp HH-HCTTCEEEEE
T ss_pred HH-hCCCCcEEEE
Confidence 54 3455434333
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.20 E-value=1.6 Score=35.75 Aligned_cols=75 Identities=23% Similarity=0.379 Sum_probs=50.7
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
+.|.||+.|++.|. +++.+++. ..+|..++.+++-++.+.+.+.. ..++.++..|..+. ++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGS------PDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcC------CCceEEEEccCCCHHHHHHHHHHH
Confidence 57889999976653 34555554 47899999999988776665432 24677788786322 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
+.-++.|+++.++.
T Consensus 77 ~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 77 IAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCcceeccccc
Confidence 12367899998875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=90.13 E-value=0.51 Score=36.04 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCCCeEEEEccch-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEE
Q 022451 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~I 179 (297)
.+.++|-+||+|. |.....++...+..++..+|+++..++....-+.................|-.+-+ ..-|+|
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~adiV 80 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAAL----TGADCV 80 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHH----TTCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhh----cCCCeE
Confidence 4568899999875 33333333333456899999998765543332221100011122233334433333 347888
Q ss_pred EEcCCCCCCCC-C-----ccCcc--cHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 180 IGDLADPIEGG-P-----CYKLY--TKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 180 i~D~~~~~~~~-p-----~~~L~--t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
++....+...+ + ...++ +.+.++.++. ....|+|++++-++
T Consensus 81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 88765432111 0 01121 1222333111 34579999887654
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=90.10 E-value=1.2 Score=32.03 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=50.6
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
.+|..||=|+.+.+..++.+... ..+ ....++.+.+.. .++||+|++|..-|. +-..++.+. ++
T Consensus 3 ~kILiVDDd~~~~~~l~~~L~~~------g~v-~~~~~~~~al~~-~~~~dlillD~~mP~-------~~G~~~~~~-lr 66 (120)
T d1p2fa2 3 WKIAVVDDDKNILKKVSEKLQQL------GRV-KTFLTGEDFLND-EEAFHVVVLDVMLPD-------YSGYEICRM-IK 66 (120)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTT------EEE-EEESSHHHHHHC-CSCCSEEEEESBCSS-------SBHHHHHHH-HH
T ss_pred CEEEEEECCHHHHHHHHHHHHhC------CEE-EEECCHHHHHhc-CCCCCEEEEeCcccc-------cchhHHHHH-Hh
Confidence 37999999999999999887532 233 346788888864 467999999987543 223477777 55
Q ss_pred ccCCCCc-EEEE
Q 022451 207 PRLNPEG-IFVT 217 (297)
Q Consensus 207 ~~L~pgG-vl~~ 217 (297)
+. .|.= ++++
T Consensus 67 ~~-~~~~~ii~i 77 (120)
T d1p2fa2 67 ET-RPETWVILL 77 (120)
T ss_dssp HH-CTTSEEEEE
T ss_pred hc-CCCCcEEEE
Confidence 43 3444 4444
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.04 E-value=1.6 Score=35.79 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|..++.+++-++.+.+.+... ..++..+..|..+ .++.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREK-----GVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTT-----TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 57889999976653 45666664 468999999999888777665432 2578888888632 2221
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++.
T Consensus 77 ~~~~g~iDilVnnaG 91 (260)
T d1zema1 77 VRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCCeehhhhc
Confidence 2367999998865
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.94 E-value=0.33 Score=38.18 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=54.2
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
-..|+||+.|+++|. +++.+++. ..+|+.++.+++-.+.+.+.+.... .-.-..+-..|. +.++..-++.|
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~-~~~~~~~~~iD 94 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADD-ASRAEAVKGAH 94 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSH-HHHHHHTTTCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccH-HHHHHHhcCcC
Confidence 468999999976543 45566654 4689999999988877776655321 011122333332 22333346789
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
++|.....+ ..+.+.+-++.
T Consensus 95 ilin~Ag~g------~~~~~~e~~~~ 114 (191)
T d1luaa1 95 FVFTAGAIG------LELLPQAAWQN 114 (191)
T ss_dssp EEEECCCTT------CCCBCHHHHHT
T ss_pred eeeecCccc------cccCCHHHHHh
Confidence 999876421 13345555554
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.88 Score=33.53 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=53.2
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~--~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
.+|..||=++.+.+..++.+... +.+.+ ...|+.+.++. ...+||+|++|..-|. .-..++++.
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~~------~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~mP~-------~~G~el~~~ 69 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISMA------PDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-------MNGLETLDK 69 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTC------TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTT-------SCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHHHhcCCCEEEEecCCCC-------CCHHHHHHH
Confidence 58999999999999999887533 34443 36788777654 2357999999987543 223478888
Q ss_pred HHcccCCCCcEEEEec
Q 022451 204 VVKPRLNPEGIFVTQA 219 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~~ 219 (297)
+++ ..|...+++-+
T Consensus 70 -ir~-~~~~~~vivlt 83 (138)
T d1a04a2 70 -LRE-KSLSGRIVVFS 83 (138)
T ss_dssp -HHH-SCCCSEEEEEE
T ss_pred -HHh-hCCCCCEEEEE
Confidence 654 45666555543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=89.36 E-value=0.3 Score=37.99 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCCCeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
-..|+|+++|.|.-+ .+..+... ..+|+++|+|| +...+.+.. -.++ ....+. -+.-|+
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DP--i~alqA~md---------Gf~v--~~~~~a----~~~aDi 81 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDP--ICAIQAVME---------GFNV--VTLDEI----VDKGDF 81 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCH--HHHHHHHTT---------TCEE--CCHHHH----TTTCSE
T ss_pred ecCCEEEEecccccchhHHHHHHhC--CCEEEEEecCc--hhhHHHHhc---------CCcc--CchhHc----cccCcE
Confidence 478999999998644 34444444 47999999999 344444332 1222 222222 356899
Q ss_pred EEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCC
Q 022451 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (297)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p 222 (297)
|+.-.-. ....+.+-| +.+|+|.++ .|.++.
T Consensus 82 ~vTaTGn-------~~vI~~~h~-----~~MKdgaIl-~N~GHf 112 (163)
T d1v8ba1 82 FITCTGN-------VDVIKLEHL-----LKMKNNAVV-GNIGHF 112 (163)
T ss_dssp EEECCSS-------SSSBCHHHH-----TTCCTTCEE-EECSST
T ss_pred EEEcCCC-------CccccHHHH-----HHhhCCeEE-Eecccc
Confidence 9986532 233455433 456655554 687754
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=89.35 E-value=2.2 Score=30.59 Aligned_cols=78 Identities=18% Similarity=0.083 Sum_probs=53.4
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
.+|..||=|+.+.+..++.+...+ =++. ...++.+.+.. ...+||+|++|..-|. .-..++++. +
T Consensus 4 ~~ILiVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~al~~~~~~~~dlvi~D~~mp~-------~~G~e~~~~-l 69 (123)
T d1dbwa_ 4 YTVHIVDDEEPVRKSLAFMLTMNG-----FAVK-MHQSAEAFLAFAPDVRNGVLVTDLRMPD-------MSGVELLRN-L 69 (123)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTT-----CEEE-EESCHHHHHHHGGGCCSEEEEEECCSTT-------SCHHHHHHH-H
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHhhcCCcEEEEeccCcc-------ccchHHHHH-H
Confidence 489999999999999998886542 1343 45677776654 3467999999987543 224488888 6
Q ss_pred cccCCCCcEEEEec
Q 022451 206 KPRLNPEGIFVTQA 219 (297)
Q Consensus 206 ~~~L~pgGvl~~~~ 219 (297)
++ ..|+-.+++-+
T Consensus 70 r~-~~~~~~iI~lt 82 (123)
T d1dbwa_ 70 GD-LKINIPSIVIT 82 (123)
T ss_dssp HH-TTCCCCEEEEE
T ss_pred Hh-cCCCCeEEEEE
Confidence 65 45655555444
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=89.23 E-value=1.5 Score=32.29 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=51.9
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|..||=|+.+.+..+..+...+ -.+. ...|+.+.+.. ...+||+|++|..-|. .-..++++. ++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~dlil~D~~mP~-------~~G~el~~~-lr 67 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAG-----FTVS-SFASATEALAGLSADFAGIVISDIRMPG-------MDGLALFRK-IL 67 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-----CEEE-EESCHHHHHHTCCTTCCSEEEEESCCSS-------SCHHHHHHH-HH
T ss_pred EEEEEECCHHHHHHHHHHHHHCC-----CEEE-EeCChHHHHHHHhccCcchHHHhhccCC-------CCHHHHHHH-HH
Confidence 68999999999999999876432 2333 45788887765 3467999999987553 223478887 66
Q ss_pred ccCCCCcEEEEe
Q 022451 207 PRLNPEGIFVTQ 218 (297)
Q Consensus 207 ~~L~pgGvl~~~ 218 (297)
+. .|+=-+++-
T Consensus 68 ~~-~~~~pvI~l 78 (140)
T d1qkka_ 68 AL-DPDLPMILV 78 (140)
T ss_dssp HH-CTTSCEEEE
T ss_pred Hh-CCCCcEEEE
Confidence 53 555434333
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=89.12 E-value=0.71 Score=33.23 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=50.1
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
.+|..||=|+.+.+..++.+...+ =++.....|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 2 krILivDD~~~~~~~l~~~L~~~g-----~~v~~~a~~~~~al~~~~~~~~dliilD~~mp~-------~~G~e~~~~-i 68 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKAG-----YEVAGEATNGREAVEKYKELKPDIVTMDITMPE-------MNGIDAIKE-I 68 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEEEEEESSHHHHHHHHHHHCCSEEEEECSCGG-------GCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcC-----CceEEEECCHHHHHHHHHhccCCEEEEecCCCC-------CCHHHHHHH-H
Confidence 589999999999999999886431 1232245677776644 2357999999986443 223477777 5
Q ss_pred cccCCCCc-EEEE
Q 022451 206 KPRLNPEG-IFVT 217 (297)
Q Consensus 206 ~~~L~pgG-vl~~ 217 (297)
++ ..|+= ++++
T Consensus 69 r~-~~~~~pvi~l 80 (118)
T d1u0sy_ 69 MK-IDPNAKIIVC 80 (118)
T ss_dssp HH-HCTTCCEEEE
T ss_pred HH-hCCCCcEEEE
Confidence 54 34443 4444
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=88.99 E-value=1.1 Score=32.16 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=51.7
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--cCCCceEEEEcCCCCCCCCCccCcccHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~ 204 (297)
.+|.+||=|+.+.+..++++...+ =++. ...++.+.+.. ...+||+|++|..-|. .-..++.+.
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g-----~~v~-~~~~~~~al~~l~~~~~~dliilD~~lp~-------~~G~el~~~- 68 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLG-----AEVT-VHPSGSAFFQHRSQLSTCDLLIVSDQLVD-------LSIFSLLDI- 68 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEEE-EESSHHHHHHTGGGGGSCSEEEEETTCTT-------SCHHHHHHH-
T ss_pred CEEEEEECCHHHHHHHHHHHHhcC-----CCeE-EECCHHHHHHHHHhcCCCCEEEEeCCCCC-------CCHHHHHHH-
Confidence 579999999999999999886432 1233 44566666543 2356999999987543 223478888
Q ss_pred HcccCCCCcEEEEe
Q 022451 205 VKPRLNPEGIFVTQ 218 (297)
Q Consensus 205 ~~~~L~pgGvl~~~ 218 (297)
+++.-..=.++++.
T Consensus 69 ir~~~~~~pii~lt 82 (118)
T d2b4aa1 69 VKEQTKQPSVLILT 82 (118)
T ss_dssp HTTSSSCCEEEEEE
T ss_pred HHhcCCCCcEEEEE
Confidence 67654333455554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.85 E-value=3.6 Score=33.45 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCeEEEEccchh---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 022451 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~-- 170 (297)
++|.||+.|+..| .+++.+++. ..+|..++.+++-++.+.+-+... ..++.++..|... .+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~-----~~~~~~~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREK-----GLNVEGSVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeecCCHHHHHHHHHHH
Confidence 5789999998655 245555554 468999999998877766655432 2567777777632 121
Q ss_pred --ccCCCceEEEEcCCC
Q 022451 171 --SRKESYDVIIGDLAD 185 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~~ 185 (297)
......|+++..+..
T Consensus 78 ~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHTTSCCCEEEECCCC
T ss_pred HHHhCCCcEEEeccccc
Confidence 123568888887653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.45 E-value=1.6 Score=35.98 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=52.6
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+.+.... ....++..+..|..+. ++.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 56888888877653 45666664 4689999999988877766554321 1235788888886322 221
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++-
T Consensus 79 ~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 79 LAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCceEEEeecc
Confidence 2257899999864
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.3 Score=38.24 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=44.2
Q ss_pred CCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhh---hhccCCCCCCCeEEE-EcchHHHHhccCC
Q 022451 101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELV-INDARAELESRKE 174 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~~~rv~~~-~~Da~~~l~~~~~ 174 (297)
...++||+||+|+-+- ...+.++ +..+|+.+..+++-++.+...+ .... +..+.+. ..|...+. ....
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~ 89 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENT----DCVVTVTDLADQQAFA-EALA 89 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHS----SCEEEEEETTCHHHHH-HHHH
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhhc----CcceEeeecccccchh-hhhc
Confidence 4678999999984432 3344444 5789999999877665444322 2111 1112222 22322322 2235
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
.+|+||...+
T Consensus 90 ~~diiIN~Tp 99 (182)
T d1vi2a1 90 SADILTNGTK 99 (182)
T ss_dssp TCSEEEECSS
T ss_pred ccceeccccC
Confidence 6899998765
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.23 E-value=3.3 Score=33.55 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh-
Q 022451 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE- 170 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~- 170 (297)
-+.|.+|+-|+++|. +++.+++. ..+|.+++.+++-++.+.+.+... ..++..+..|..+ +++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVDEIKSF-----GYESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHTT-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEccCCCHHHHHHHHHH
Confidence 356788888876552 23444443 468999999999887776655432 2578888888743 221
Q ss_pred --ccCCCceEEEEcCC
Q 022451 171 --SRKESYDVIIGDLA 184 (297)
Q Consensus 171 --~~~~~yD~Ii~D~~ 184 (297)
..-++.|+++.++.
T Consensus 81 ~~~~~g~iDilvnnag 96 (251)
T d2c07a1 81 ILTEHKNVDILVNNAG 96 (251)
T ss_dssp HHHHCSCCCEEEECCC
T ss_pred HHHhcCCceeeeeccc
Confidence 23468999998875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=87.99 E-value=1.1 Score=34.43 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..+.++||++|+|+-+-+ ..+.+ ...+|+.+..+++-.+...+.|... .++.....|. .....+|
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~~~~a~~l~~~~~~~------~~~~~~~~~~-----~~~~~~d 81 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRTFSKTKELAERFQPY------GNIQAVSMDS-----IPLQTYD 81 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESSHHHHHHHHHHHGGG------SCEEEEEGGG-----CCCSCCS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccchHHHHHHHHHHHhhc------cccchhhhcc-----ccccccc
Confidence 356889999999765532 33333 3478999999987766655555422 2344444331 2346799
Q ss_pred EEEEcCCC
Q 022451 178 VIIGDLAD 185 (297)
Q Consensus 178 ~Ii~D~~~ 185 (297)
+||.-.+.
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99988763
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.98 E-value=4 Score=30.36 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCCeEEEEccch-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceE
Q 022451 101 PNPKTIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~ 178 (297)
..+++|-+||+|. | .++..++...-..++..+|+++...+.-..-+... ..+....+++..+|- +.+ ..-|+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~-~~~~~~~~~~~~~d~-~~l----~daDv 77 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG-KVFAPKPVDIWHGDY-DDC----RDADL 77 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH-TTSSSSCCEEEECCG-GGT----TTCSE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC-ccccCCCeEEEECCH-HHh----cccee
Confidence 4567899999873 3 34455554433568999999998754322222211 112234566667773 222 34799
Q ss_pred EEEcCCCCCCCCC-ccCcc--c----HHHHHHHHcccCCCCcEEEEecC
Q 022451 179 IIGDLADPIEGGP-CYKLY--T----KSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 179 Ii~D~~~~~~~~p-~~~L~--t----~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|++-...+...+. ...++ + +++.+. ++ .-.|+|++++-++
T Consensus 78 vvitag~~~~~~~~R~dl~~~N~~i~~~i~~~-i~-~~~p~a~~ivvtN 124 (148)
T d1ldna1 78 VVICAGANQKPGETRLDLVDKNIAIFRSIVES-VM-ASGFQGLFLVATN 124 (148)
T ss_dssp EEECCSCCCCTTTCSGGGHHHHHHHHHHHHHH-HH-HHTCCSEEEECSS
T ss_pred EEEecccccccCcchhHHHHHHHHHHHHHHHH-HH-hhCCCceEEEecC
Confidence 9987654432111 11222 1 223333 33 4468998876543
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=87.93 E-value=2.1 Score=30.59 Aligned_cols=77 Identities=16% Similarity=0.023 Sum_probs=48.9
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|.+||=|+.+.+..++.+...+ -.+ ....++.+.+.. ...+||+|++|..-|. .-..++++. ++
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~G-----~~v-~~a~~g~eal~~l~~~~~dliilD~~mP~-------~~G~e~~~~-i~ 67 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDAG-----HQV-DDAEDAKEADYYLNEHIPDIAIVDLGLPD-------EDGLSLIRR-WR 67 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHHHHSCCSEEEECSCCSS-------SCHHHHHHH-HH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHhcccceeehhccCCC-------chhHHHHHH-HH
Confidence 68899999999999999886432 122 245566555433 2367999999987554 223477777 66
Q ss_pred ccCCCCcEEEEe
Q 022451 207 PRLNPEGIFVTQ 218 (297)
Q Consensus 207 ~~L~pgGvl~~~ 218 (297)
+.-..=-++++.
T Consensus 68 ~~~~~~pvi~lt 79 (119)
T d2pl1a1 68 SNDVSLPILVLT 79 (119)
T ss_dssp HTTCCSCEEEEE
T ss_pred hcCcccceEeee
Confidence 543222344443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=3.4 Score=34.46 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+-+..........++..+..|..+ +++.
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 57889999976553 34555554 468999999988776655444321111124578888888632 2222
Q ss_pred --cCCCceEEEEcCCC
Q 022451 172 --RKESYDVIIGDLAD 185 (297)
Q Consensus 172 --~~~~yD~Ii~D~~~ 185 (297)
.-++.|+++.++..
T Consensus 89 ~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 89 LDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCeEEEEeeccc
Confidence 23579999998753
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.86 E-value=0.94 Score=34.02 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=30.3
Q ss_pred CCeEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh
Q 022451 103 PKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYL 146 (297)
Q Consensus 103 ~~~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f 146 (297)
.|+||+||+|- |. ++..|.+. ..+|+++|.+..-.+...+.+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~ 45 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGV 45 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhcc
Confidence 58999999973 33 34555554 348999999999887766654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.86 E-value=2.2 Score=32.71 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=38.8
Q ss_pred eEEEEccchhHH---HHHHHhcC---CCcEEEEEECCHHHHHHH------HhhhhhccCCCCCCCeEE-EEcchHHHHhc
Q 022451 105 TIFIMGGGEGST---AREILRHK---TVEKVVMCDIDEEVVEFC------KSYLVVNKEAFSDPRLEL-VINDARAELES 171 (297)
Q Consensus 105 ~VL~iG~G~G~~---~~~l~~~~---~~~~v~~VEid~~vi~~a------~~~f~~~~~~~~~~rv~~-~~~Da~~~l~~ 171 (297)
+|-+||+|+.+. ...++... +..+|..+|+|++..+.. ++.+.... ..+++ ...|-.+-++
T Consensus 3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~td~~~al~- 76 (169)
T d1s6ya1 3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAG-----VPIEIHLTLDRRRALD- 76 (169)
T ss_dssp EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCCEEEEESCHHHHHT-
T ss_pred EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcC-----CCceeeecCCchhhcC-
Confidence 688999985432 23333332 236999999998653322 22222111 22332 3455445443
Q ss_pred cCCCceEEEEcCC
Q 022451 172 RKESYDVIIGDLA 184 (297)
Q Consensus 172 ~~~~yD~Ii~D~~ 184 (297)
..|+|++-..
T Consensus 77 ---gaDvVv~ta~ 86 (169)
T d1s6ya1 77 ---GADFVTTQFR 86 (169)
T ss_dssp ---TCSEEEECCC
T ss_pred ---CCCEEEEccc
Confidence 3699998765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=3.8 Score=33.06 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=53.4
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------H---
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L--- 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l--- 169 (297)
.++.||+-|++.|. +++++++. ..+|..++.+++-++...+.+... .+++..+..|..+. +
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGL-----GAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 46778888876653 45666654 468999999999887666655432 36788888886432 2
Q ss_pred hccCCCceEEEEcCCCC
Q 022451 170 ESRKESYDVIIGDLADP 186 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~~ 186 (297)
....+..|+++.++...
T Consensus 79 ~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHTCCCSEEEECCCCC
T ss_pred HHHcCCCceeEeecccc
Confidence 22346799999887643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.16 Score=38.49 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=52.6
Q ss_pred eEEEEccch-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|++||+|. |+ ++..|++. ..+|+.++.++.-.+.. ...... .......+..+..+.+ +.+|+|++-
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~----~~~D~iii~ 70 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSV----NLVETD-GSIFNESLTANDPDFL----ATSDLLLVT 70 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEE----EEECTT-SCEEEEEEEESCHHHH----HTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhh----ccccCC-ccccccccccchhhhh----cccceEEEe
Confidence 799999985 33 45555553 35899999887522211 001000 0011222333333333 359999997
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEE
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~ 217 (297)
... ..+.+.++. ++..++++..++.
T Consensus 71 vka---------~~~~~~~~~-l~~~~~~~~~Iv~ 95 (167)
T d1ks9a2 71 LKA---------WQVSDAVKS-LASTLPVTTPILL 95 (167)
T ss_dssp SCG---------GGHHHHHHH-HHTTSCTTSCEEE
T ss_pred ecc---------cchHHHHHh-hccccCcccEEee
Confidence 542 124577888 7899998886654
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=87.72 E-value=3.5 Score=31.50 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=40.8
Q ss_pred CeEEEEccchhHHHH----HHHhc--CCCcEEEEEECCHHHHHHHHh----hhhhccCCCCCCCeEEE-EcchHHHHhcc
Q 022451 104 KTIFIMGGGEGSTAR----EILRH--KTVEKVVMCDIDEEVVEFCKS----YLVVNKEAFSDPRLELV-INDARAELESR 172 (297)
Q Consensus 104 ~~VL~iG~G~G~~~~----~l~~~--~~~~~v~~VEid~~vi~~a~~----~f~~~~~~~~~~rv~~~-~~Da~~~l~~~ 172 (297)
-+|-+||+|+-+.+. .++.. ....+|..+|+|++-++.... ..... ....++. ..|-.+-+.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~-----~~~~~i~~~td~~eaL~-- 75 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV-----GADLKFEKTMNLDDVII-- 75 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT-----TCCCEEEEESCHHHHHT--
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc-----CCCeEEEEeCChhhccc--
Confidence 479999998644332 23332 234599999999987664332 22222 1334443 356555553
Q ss_pred CCCceEEEEcC
Q 022451 173 KESYDVIIGDL 183 (297)
Q Consensus 173 ~~~yD~Ii~D~ 183 (297)
-.|+|+...
T Consensus 76 --dad~Vv~~~ 84 (171)
T d1obba1 76 --DADFVINTA 84 (171)
T ss_dssp --TCSEEEECC
T ss_pred --CCCeEeeec
Confidence 367877654
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=87.70 E-value=0.77 Score=34.27 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHH---hcc-----CCCceEEEEcCCCCCCCCCccCc
Q 022451 125 TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAEL---ESR-----KESYDVIIGDLADPIEGGPCYKL 195 (297)
Q Consensus 125 ~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~-~~~Da~~~l---~~~-----~~~yD~Ii~D~~~~~~~~p~~~L 195 (297)
|..+|.+||=|+...+..++.+...+ -..++ ...|+.+.+ +.. ..+||+|++|..-|. .
T Consensus 2 ppk~ILiVdD~~~~~~~l~~~L~~~g-----~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~-------~ 69 (144)
T d1i3ca_ 2 PPKVILLVEDSKADSRLVQEVLKTST-----IDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-------K 69 (144)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCC-----SCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-------S
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcccc-------c
Confidence 45789999999999999998876432 23343 456665544 321 346999999987543 2
Q ss_pred ccHHHHHHHHcc
Q 022451 196 YTKSFYEFVVKP 207 (297)
Q Consensus 196 ~t~ef~~~~~~~ 207 (297)
-..++.+. +++
T Consensus 70 ~G~el~~~-ir~ 80 (144)
T d1i3ca_ 70 DGREVLAE-IKQ 80 (144)
T ss_dssp CHHHHHHH-HHH
T ss_pred cchHHHHH-HHh
Confidence 23477777 664
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=87.57 E-value=2.1 Score=32.00 Aligned_cols=110 Identities=24% Similarity=0.295 Sum_probs=57.6
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
++|-+||+|. ..++..++...-..++..+|++++..+.-..-+.... .....+.++..+|-.+ + +.-|+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~-~~~~~~~~~~~~d~~~-l----~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM-ANLEAHGNIVINDWAA-L----ADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG-GGSSSCCEEEESCGGG-G----TTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc-cccCCccceeccCHHH-h----ccccEEEE
Confidence 6899999873 3344545544335689999999987643222121100 0112345666777322 2 34799988
Q ss_pred cCCCCC--CCCCc---cCcc--cHHHHHHH---HcccCCCCcEEEEecC
Q 022451 182 DLADPI--EGGPC---YKLY--TKSFYEFV---VKPRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~--~~~p~---~~L~--t~ef~~~~---~~~~L~pgGvl~~~~~ 220 (297)
-+-.+. ...|. ..|+ +...++.+ + ....|++++++-++
T Consensus 76 taG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i-~~~~p~aivivvtN 123 (146)
T d1hyha1 76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNL-KESGFHGVLVVISN 123 (146)
T ss_dssp CCSCGGGTC-------CTTHHHHHHHHHHHHHHH-HHTTCCSEEEECSS
T ss_pred eccccccccccCCccHHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEecC
Confidence 654321 00110 1121 22333331 2 34579999877654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=87.37 E-value=0.31 Score=37.84 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCCCeEEEEcc--chhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-ccCCCc
Q 022451 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESY 176 (297)
Q Consensus 101 ~~~~~VL~iG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~-l~-~~~~~y 176 (297)
++..+||+-|+ |-|..+.++++..+ .+|+++--+++-.+.+++.-. +.+ +...|.... +. ..++.+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~k~~~~~~lGa--------d~v-i~~~~~~~~~~~~~~~~gv 91 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNREAADYLKQLGA--------SEV-ISREDVYDGTLKALSKQQW 91 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSSTHHHHHHHTC--------SEE-EEHHHHCSSCCCSSCCCCE
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHHHHHHHHhhcc--------cce-EeccchhchhhhcccCCCc
Confidence 34567999874 45567788888764 678998888887888776421 111 211221111 11 124679
Q ss_pred eEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 177 D~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
|+|+-... . +.+.. ..++|+++|.+++..
T Consensus 92 d~vid~vg------g-------~~~~~-~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 92 QGAVDPVG------G-------KQLAS-LLSKIQYGGSVAVSG 120 (167)
T ss_dssp EEEEESCC------T-------HHHHH-HHTTEEEEEEEEECC
T ss_pred eEEEecCc------H-------HHHHH-HHHHhccCceEEEee
Confidence 98875432 1 45566 689999999998764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=86.92 E-value=1.4 Score=34.08 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=50.1
Q ss_pred CCCCeEEEEccc---hhHHHHHHHhcCCCcEEEEEECC---HHHHHHHHhhhhhccCCCCCCCeEEEEc---ch------
Q 022451 101 PNPKTIFIMGGG---EGSTAREILRHKTVEKVVMCDID---EEVVEFCKSYLVVNKEAFSDPRLELVIN---DA------ 165 (297)
Q Consensus 101 ~~~~~VL~iG~G---~G~~~~~l~~~~~~~~v~~VEid---~~vi~~a~~~f~~~~~~~~~~rv~~~~~---Da------ 165 (297)
.+..+||++.+| .|..+.++++..+...|.++.-. ++..+.+++. +.. .++.. |.
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l-Gad---------~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL-GAT---------QVITEDQNNSREFGPT 96 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH-TCS---------EEEEHHHHHCGGGHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc-ccc---------EEEeccccchhHHHHH
Confidence 345689998433 34566777777655434445333 3334444442 111 12221 11
Q ss_pred -HHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEec
Q 022451 166 -RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (297)
Q Consensus 166 -~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~ 219 (297)
.+........+|+|+ |.. + .+.+.. ..+.|+|+|.++...
T Consensus 97 v~~~~~~~g~~vdvv~-D~v-----g-------~~~~~~-~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLAL-NCV-----G-------GKSSTG-IARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHHTCCEEEEE-ESS-----C-------HHHHHH-HHHTSCTTCEEEECC
T ss_pred HHHHHhhccCCceEEE-ECC-----C-------cchhhh-hhhhhcCCcEEEEEC
Confidence 112222356789888 432 1 134455 578999999998653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.88 E-value=0.31 Score=36.71 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCH
Q 022451 103 PKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 103 ~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~ 136 (297)
+|+|++||+|..++ +.++.+..+..+|+.+|-++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 68999999997765 46666666667999999877
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.84 E-value=1.5 Score=32.62 Aligned_cols=97 Identities=10% Similarity=0.049 Sum_probs=57.6
Q ss_pred CeEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-cCCCce
Q 022451 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESYD 177 (297)
Q Consensus 104 ~~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~-~~~~yD 177 (297)
.+|+++|+|.-+ ++..|.+. ..++++||.||+... .+.+.. ...+.++.||+.+ .|+. .-++.|
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~~~~~~~~~--------~~~~~vi~Gd~~d~~~L~~a~i~~a~ 73 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLEQRL--------GDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHH--------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhHHHHHHHhh--------cCCcEEEEccCcchHHHHHhccccCC
Confidence 479999987332 34444443 467999999987543 333321 2468899999854 3443 336789
Q ss_pred EEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
.|++-..+.. ..+ .... ..+.+.|+-.+++...
T Consensus 74 ~vi~~~~~d~-----~n~----~~~~-~~r~~~~~~~iia~~~ 106 (153)
T d1id1a_ 74 AILALSDNDA-----DNA----FVVL-SAKDMSSDVKTVLAVS 106 (153)
T ss_dssp EEEECSSCHH-----HHH----HHHH-HHHHHTSSSCEEEECS
T ss_pred EEEEccccHH-----HHH----HHHH-HHHHhCCCCceEEEEc
Confidence 9988754321 111 1122 3456788877776653
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=86.74 E-value=2.9 Score=29.90 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
.+|..||=|+.+.+..++.+...+ =++. ...|+.+.+.. ...+||+|++|..-|. .-..++++. +
T Consensus 4 ~~ILIVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~a~~~l~~~~~dlii~D~~mp~-------~~G~el~~~-l 69 (123)
T d1krwa_ 4 GIVWVVDDDSSIRWVLERALAGAG-----LTCT-TFENGNEVLAALASKTPDVLLSDIRMPG-------MDGLALLKQ-I 69 (123)
T ss_dssp CEEEEESSSHHHHHHHHHHHHHTT-----CEEE-EESSSHHHHHHHTTCCCSEEEECCSSSS-------STTHHHHHH-H
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC-----CEEE-EeCCHHHHHHHHHhCCCCEEEehhhcCC-------chHHHHHHH-H
Confidence 469999999999999998876432 1333 45677666544 3468999999987543 223477777 6
Q ss_pred cccCCCCcEEEEe
Q 022451 206 KPRLNPEGIFVTQ 218 (297)
Q Consensus 206 ~~~L~pgGvl~~~ 218 (297)
++. .|+--+++-
T Consensus 70 ~~~-~~~~piI~~ 81 (123)
T d1krwa_ 70 KQR-HPMLPVIIM 81 (123)
T ss_dssp HHH-SSSCCEEES
T ss_pred HHh-CCCCeEEEE
Confidence 654 455444443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.69 E-value=2.9 Score=34.09 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=51.9
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
+.|.+|+-|++.|. +++.+++. ..+|..++.+++-++.+.+-+.... .+.++..+..|..+ ++..
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETA---PDAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHC---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhC---CCCeEEEEeccCCCHHHHHHHHHHH
Confidence 46788998977653 45666664 4789999999998877666543221 23567788888532 2221
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++-
T Consensus 78 ~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHSCCSEEEECCC
T ss_pred HHHhCCCCEEEECCc
Confidence 2367999998874
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=86.67 E-value=0.94 Score=33.51 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=51.8
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-E-EEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-L-VINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~-~-~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~ 203 (297)
-+|..||=|+.+.+..++.+... +... + ...|+.+.+.. ...+||+|++|.--|. .-..++++.
T Consensus 4 irVLiVDD~~~~r~~l~~~L~~~------g~~~~v~~a~~g~~al~~~~~~~pDlvllDi~MP~-------~dG~e~~~~ 70 (140)
T d1a2oa1 4 IRVLSVDDSALMRQIMTEIINSH------SDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPR-------MDGLDFLEK 70 (140)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSS-------SCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhC------CCeEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCC-------CCHHHHHHH
Confidence 37999999999999999988643 2232 2 35677766543 2357999999987543 223478888
Q ss_pred HHcccCCCCcEEEEe
Q 022451 204 VVKPRLNPEGIFVTQ 218 (297)
Q Consensus 204 ~~~~~L~pgGvl~~~ 218 (297)
+++ ..|.-.+++-
T Consensus 71 -ir~-~~~~~~i~i~ 83 (140)
T d1a2oa1 71 -LMR-LRPMPVVMVS 83 (140)
T ss_dssp -HHH-SSCCCEEEEE
T ss_pred -HHH-hCCCCcEEEE
Confidence 554 4566555544
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=86.58 E-value=1.1 Score=32.09 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=46.8
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
++|..||=|+...+..+..+...+ =.+ ....|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 1 KkILiVDD~~~~~~~l~~~L~~~g-----~~v-~~a~~~~~al~~l~~~~~dlil~D~~mp~-------~~G~~l~~~-l 66 (121)
T d1zesa1 1 RRILVVEDEAPIREMVCFVLEQNG-----FQP-VEAEDYDSAVNQLNEPWPDLILLDWMLPG-------GSGIQFIKH-L 66 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEECSHHHHHHHSSSSCCSEEEECSSCTT-------SCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECChHHHHHHHHccCCCEEEeecCCCC-------CCHHHHHHH-H
Confidence 378999999999999998886432 122 345678777754 3567999999987543 224477777 5
Q ss_pred cc
Q 022451 206 KP 207 (297)
Q Consensus 206 ~~ 207 (297)
++
T Consensus 67 r~ 68 (121)
T d1zesa1 67 KR 68 (121)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.45 E-value=1.1 Score=32.23 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=50.1
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
.+|.+||=|+.+.+..++.+...+ =++. ...|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~-------~~G~~~~~~-~ 68 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSG-----YDVI-TASDGEEALKKAETEKPDLIVLDVMLPK-------LDGIEVCKQ-L 68 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEEE-EESSHHHHHHHHHHHCCSEEEEESSCSS-------SCHHHHHHH-H
T ss_pred CCEEEEECCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHhcccccEEEecccccC-------CCCchhhhh-h
Confidence 589999999999999999886432 1222 45566665543 2357999999987543 223466676 5
Q ss_pred cccCCCCcEEEEe
Q 022451 206 KPRLNPEGIFVTQ 218 (297)
Q Consensus 206 ~~~L~pgGvl~~~ 218 (297)
++.-..--++++.
T Consensus 69 r~~~~~~~ii~lt 81 (121)
T d1mvoa_ 69 RQQKLMFPILMLT 81 (121)
T ss_dssp HHTTCCCCEEEEE
T ss_pred hccCCCCEEEEEE
Confidence 5443333455544
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.42 E-value=2.2 Score=30.97 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=48.1
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc------cCCCceEEEEcCCCCCCCCCccCcccHHHH
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES------RKESYDVIIGDLADPIEGGPCYKLYTKSFY 201 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~------~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~ 201 (297)
+|.+||=|+...+..++.+...+ -..+. ...|+.+.+.. ..++||+|++|..-|. +-..+..
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~~g----~~~v~-~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~-------~dG~el~ 70 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNLEG----IENIE-LACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-------VDGLLST 70 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTT----CCCEE-EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-------SCHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcC----CeEEE-EEcChHHHHHHHHhhhhccCCCCEEEEEeCCCC-------CCHHHHH
Confidence 68999999999999998886432 12344 34666555432 3578999999987543 2234677
Q ss_pred HHHHcccCCCCc
Q 022451 202 EFVVKPRLNPEG 213 (297)
Q Consensus 202 ~~~~~~~L~pgG 213 (297)
+. +++...+.-
T Consensus 71 ~~-ir~~~~~~~ 81 (128)
T d2r25b1 71 KM-IRRDLGYTS 81 (128)
T ss_dssp HH-HHHHSCCCS
T ss_pred HH-HHHccCCCC
Confidence 77 665444444
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=86.28 E-value=0.29 Score=40.32 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=26.4
Q ss_pred cCCCCCeEEEEccchhHHH--HHHHhcCCCcEEEEEECCH
Q 022451 99 HHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid~ 136 (297)
...+|++|++||+|.++++ ..|.+. ..+|+++|-++
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~ 63 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE 63 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 4467899999999987764 444444 35899999765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.25 E-value=4.7 Score=31.29 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=56.1
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCC--------CCCCCeEEEEcchHHHHhccC
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESRK 173 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f-~~~~~~--------~~~~rv~~~~~Da~~~l~~~~ 173 (297)
+|.++|+|-=+ ++..+++. .-+|+++|+|++.++..++-- +..... ....+ -....|..+.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~-~~~~~~~~~~i---- 74 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGR-LSGTTDFKKAV---- 74 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTC-EEEESCHHHHH----
T ss_pred EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccc-cccCCCHHHHH----
Confidence 58899999433 44555443 358999999999988766531 111000 00011 12333333333
Q ss_pred CCceEEEEcCCCCCCCCCccCc-ccHHHHHHH--HcccCCCCcEEEEecC
Q 022451 174 ESYDVIIGDLADPIEGGPCYKL-YTKSFYEFV--VKPRLNPEGIFVTQAG 220 (297)
Q Consensus 174 ~~yD~Ii~D~~~~~~~~p~~~L-~t~ef~~~~--~~~~L~pgGvl~~~~~ 220 (297)
...|+|++..+.|........+ +-....+.+ +.+.++++..+++...
T Consensus 75 ~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~ST 124 (202)
T d1mv8a2 75 LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST 124 (202)
T ss_dssp HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC
T ss_pred hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccc
Confidence 2368888888765321110111 111222220 2356667888887754
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=86.07 E-value=1.5 Score=32.54 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=42.3
Q ss_pred eEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||+|. ..++..++...-..++..+|+++...+....-+..... ....+.++.. +| .+-+ ...|+|++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~~~~i~~~~~-~~~~----~dadvvvi 75 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLFDTKVTGSND-YADT----ANSDIVII 75 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTCCCEEEEESC-GGGG----TTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcccceEEecCC-HHHh----cCCeEEEE
Confidence 688999763 23344444443356899999999876644322211100 0113444443 44 3323 34799988
Q ss_pred cCCCCC
Q 022451 182 DLADPI 187 (297)
Q Consensus 182 D~~~~~ 187 (297)
-.-.|.
T Consensus 76 tag~~~ 81 (142)
T d1guza1 76 TAGLPR 81 (142)
T ss_dssp CCSCCC
T ss_pred EEecCC
Confidence 765443
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.02 E-value=1.4 Score=31.69 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=46.2
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
-+|..||=|+.+.+..++++...+ =.+. ...|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 2 irILiVdDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~al~~l~~~~~dlillD~~mp~-------~~g~~~~~~-l 67 (122)
T d1kgsa2 2 VRVLVVEDERDLADLITEALKKEM-----FTVD-VCYDGEEGMYMALNEPFDVVILDIMLPV-------HDGWEILKS-M 67 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT-----CEEE-EESSHHHHHHHHHHSCCSEEEEESCCSS-------SCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCC-----CEEE-EEcchHHHHHHHHhhCcccccccccccc-------chhHHHHHH-H
Confidence 478999999999999999886432 1233 56777765543 2468999999987543 223466676 5
Q ss_pred ccc
Q 022451 206 KPR 208 (297)
Q Consensus 206 ~~~ 208 (297)
++.
T Consensus 68 r~~ 70 (122)
T d1kgsa2 68 RES 70 (122)
T ss_dssp HHT
T ss_pred Hhc
Confidence 543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.95 E-value=3.2 Score=33.65 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=50.9
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++.++.+.+.+.. ..++.++..|..+. ++
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGT------PDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCC------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCC------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 46788888865542 34555554 47899999999988877765532 25788888887432 22
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
+.-++.|+++.++.
T Consensus 77 ~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHhCCceEEEeccc
Confidence 12367999998875
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=85.72 E-value=2.4 Score=30.54 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=50.6
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|.+||=|+.+.+..++.+...+ -++ ....++.+.+.. ...+||+|++|..-|. .-..++++. ++
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v-~~a~~~~~al~~~~~~~~dliilD~~mp~-------~~G~~~~~~-i~ 69 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAG-----FEV-ETFDCASTFLEHRRPEQHGCLVLDMRMPG-------MSGIELQEQ-LT 69 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTT-----CEE-EEESSHHHHHHHCCTTSCEEEEEESCCSS-------SCHHHHHHH-HH
T ss_pred EEEEEECCHHHHHHHHHHHHHcC-----CCc-cccccHHHHHHHHHhcCCCEeehhhhccc-------chhHHHHHH-HH
Confidence 79999999999999999886432 123 355677777765 3478999999987543 223367777 55
Q ss_pred ccCCCCcEEEE
Q 022451 207 PRLNPEGIFVT 217 (297)
Q Consensus 207 ~~L~pgGvl~~ 217 (297)
+.-..--++++
T Consensus 70 ~~~~~~~ii~l 80 (128)
T d1yioa2 70 AISDGIPIVFI 80 (128)
T ss_dssp HTTCCCCEEEE
T ss_pred hhCCCCeEEEE
Confidence 44333334444
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=5.8 Score=31.76 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=48.4
Q ss_pred CCCeEEEEccchh---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhcc
Q 022451 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESR 172 (297)
Q Consensus 102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~~ 172 (297)
++|.||+.|+++| .+++.+++. ..+|.+++.+++-++...+.+ +.+..+..|..+ .+. .
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~-~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVREC---------PGIEPVCVDLGDWEATERALG-S 73 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS---------TTCEEEECCTTCHHHHHHHHT-T
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhc---------CCCeEEEEeCCCHHHHHHHHH-H
Confidence 6789999997765 345555554 468999999998877655432 345566666532 232 2
Q ss_pred CCCceEEEEcCCC
Q 022451 173 KESYDVIIGDLAD 185 (297)
Q Consensus 173 ~~~yD~Ii~D~~~ 185 (297)
-++.|+++.++..
T Consensus 74 ~g~iDilVnnAg~ 86 (244)
T d1pr9a_ 74 VGPVDLLVNNAAV 86 (244)
T ss_dssp CCCCCEEEECCCC
T ss_pred hCCceEEEecccc
Confidence 3679999988753
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.49 E-value=1.9 Score=35.65 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=50.5
Q ss_pred CCCeEEEEccchh---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------H
Q 022451 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---------L 169 (297)
Q Consensus 102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~---------l 169 (297)
++|.+|+-|+++| .+++.+++. ..+|.+++.++.-++.+.+.+... ...++.++..|..+. +
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~~~l~~~----~g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQ----TGNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH----HSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHh----cCCceEEEEecccChHHHHHHhhhh
Confidence 4688999997665 345555554 479999999998776555443211 124667777776321 2
Q ss_pred hccCCCceEEEEcCCC
Q 022451 170 ESRKESYDVIIGDLAD 185 (297)
Q Consensus 170 ~~~~~~yD~Ii~D~~~ 185 (297)
.....+.|+++..+..
T Consensus 98 ~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 98 IKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred hhhccccchhhhhhhh
Confidence 2235789999988753
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=85.45 E-value=5.5 Score=29.46 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=55.8
Q ss_pred CCeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEE
Q 022451 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (297)
Q Consensus 103 ~~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii 180 (297)
|.+|-+||+| +..++..++...-..++..+|+++...+.-..-+..... + .+..++...+-.+-+ ..-|+|+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-~-~~~~~i~~~~~~~~~----~daDvVV 74 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-F-YPTVSIDGSDDPEIC----RDADMVV 74 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-G-STTCEEEEESCGGGG----TTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-c-CCCceeecCCCHHHh----hCCcEEE
Confidence 5789999987 233344444443456899999999876432111221110 1 123344434322222 2369999
Q ss_pred EcCCCCCCCCCc-cCcc--cH----HHHHHHHcccCCCCcEEEEecC
Q 022451 181 GDLADPIEGGPC-YKLY--TK----SFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 181 ~D~~~~~~~~p~-~~L~--t~----ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+-.-.+...+.. ..|+ +. ++... + ..-.|+|++++-++
T Consensus 75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~-i-~~~~p~ai~ivvtN 119 (143)
T d1llda1 75 ITAGPRQKPGQSRLELVGATVNILKAIMPN-L-VKVAPNAIYMLITN 119 (143)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHH-H-HHHCTTSEEEECCS
T ss_pred EecccccCCCCchhhhhhhhHHHHHHHHHH-H-HhhCCCeEEEEeCC
Confidence 977654321110 0111 11 22333 2 33478998876553
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=85.37 E-value=5.6 Score=29.48 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=57.1
Q ss_pred CCCCeEEEEccch-hHH-HHHHHhcCCCcEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 101 PNPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 101 ~~~~~VL~iG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
++..+|.+||+|. |.. +..++...-..++..+|++++..+. +.. +... .. ......+..+|-.+ + ..-|
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D-l~~a-~~-~~~~~~~~~~d~~~-~----~~ad 74 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LEDA-QA-FTAPKKIYSGEYSD-C----KDAD 74 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHGG-GG-GSCCCEEEECCGGG-G----TTCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH-Hhcc-cc-ccCCceEeeccHHH-h----cccc
Confidence 3456899999874 433 3444444335689999999976542 222 1110 01 12345667777322 2 3479
Q ss_pred EEEEcCCCCCCCCC-ccCccc------HHHHHHHHcccCCCCcEEEEecC
Q 022451 178 VIIGDLADPIEGGP-CYKLYT------KSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 178 ~Ii~D~~~~~~~~p-~~~L~t------~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
+|++-...+...+. ...++. ++.... ++ .-.|+|++++-++
T Consensus 75 ivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~-i~-~~~p~aivivvtN 122 (146)
T d1ez4a1 75 LVVITAGAPQKPGESRLDLVNKNLNILSSIVKP-VV-DSGFDGIFLVAAN 122 (146)
T ss_dssp EEEECCCC----------CHHHHHHHHHHHHHH-HH-HTTCCSEEEECSS
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHHHHHHH-Hh-hcCCCcEEEEeCC
Confidence 99987654332111 112221 233333 33 4578998877654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=85.37 E-value=4 Score=33.18 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=49.2
Q ss_pred CCCeEEEEccchh---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
+.|.+|+-|++.| .+++.+++. ..+|..++.+++-++...+-++ .++.++..|..+ +++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELG--------DAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC--------CceEEEEcccCCHHHHHHHHHHH
Confidence 5788999998766 345666664 4689999999887765544332 457778887632 2221
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++.
T Consensus 74 ~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 74 REEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCccEEEecCc
Confidence 2357999998875
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.29 E-value=1.8 Score=33.20 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=42.5
Q ss_pred eEEEEccchhH--HHHHHHhcCCCcEEEE-EECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGEGS--TAREILRHKTVEKVVM-CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~G~--~~~~l~~~~~~~~v~~-VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|.+||||.-+ ....+.. .+..+|++ +|.|++-.+...+.+... +..+ +..|..+.+.. ...|+|++
T Consensus 3 ki~iIG~G~~g~~~~~~l~~-~~~~~i~ai~d~~~~~~~~~~~~~~~~------~~~~-~~~~~~~ll~~--~~iD~v~I 72 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHL-APNATISGVASRSLEKAKAFATANNYP------ESTK-IHGSYESLLED--PEIDALYV 72 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHH-CTTEEEEEEECSSHHHHHHHHHHTTCC------TTCE-EESSHHHHHHC--TTCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHh-CCCCEEEEEEeCCccccccchhccccc------ccee-ecCcHHHhhhc--cccceeee
Confidence 68999998533 2333433 34567774 599987665544433322 1222 45777777753 46999998
Q ss_pred cCC
Q 022451 182 DLA 184 (297)
Q Consensus 182 D~~ 184 (297)
..+
T Consensus 73 ~tp 75 (184)
T d1ydwa1 73 PLP 75 (184)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=85.17 E-value=3.4 Score=29.19 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=49.7
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
++|.+||=|+.+.+..+..+...+ =++ ....|+.+.+.. ...+||+|++|..-|. .-..++++. +
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~g-----~~v-~~a~~~~eal~~~~~~~~dlillD~~mp~-------~~G~~~~~~-i 66 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKEG-----YEV-VTAFNGREALEQFEAEQPDIIILDLMLPE-------IDGLEVAKT-I 66 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHHHHHCCSEEEECSSCSS-------SCHHHHHHH-H
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHhcCCCEEEeccccCC-------CCccHHHHH-H
Confidence 378999999999999998876432 123 255777666543 2357999999986443 223477777 5
Q ss_pred cccCCCCcEEEEe
Q 022451 206 KPRLNPEGIFVTQ 218 (297)
Q Consensus 206 ~~~L~pgGvl~~~ 218 (297)
++. .+--++++.
T Consensus 67 ~~~-~~~pvI~lt 78 (117)
T d2a9pa1 67 RKT-SSVPILMLS 78 (117)
T ss_dssp HTT-CCCCEEEEE
T ss_pred HhC-CCCCEEEEe
Confidence 543 333355444
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.10 E-value=6.2 Score=31.88 Aligned_cols=76 Identities=13% Similarity=0.267 Sum_probs=51.8
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+.+... ..++..+..|..+ .+..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSK-----GFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCCceEEEeeCCCHHHHHHHHHHH
Confidence 57889999977553 45555554 468999999998887766655432 2567788888632 2221
Q ss_pred ---cCCCceEEEEcCC
Q 022451 172 ---RKESYDVIIGDLA 184 (297)
Q Consensus 172 ---~~~~yD~Ii~D~~ 184 (297)
...+.|+++.++-
T Consensus 80 ~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHTTTCCCEEEECCC
T ss_pred HHHhCCCceEEEECCc
Confidence 2347999999875
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=85.05 E-value=1.1 Score=39.01 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHhcC-------CCcEEEEEECCHHHHHHHHhhhh
Q 022451 100 HPNPKTIFIMGGGEGSTAREILRHK-------TVEKVVMCDIDEEVVEFCKSYLV 147 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~~~~l~~~~-------~~~~v~~VEid~~vi~~a~~~f~ 147 (297)
.+.+.+|+++|+|.|.+++.+++.. ...++..||.+|...+.-++.+.
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 4556789999999999998776531 34578999999998877776553
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=4.9 Score=32.48 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=49.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++.++...+.+ +++..+..|..+ +++.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~~---------~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQEL---------PGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhc---------CCCeEEEccCCCHHHHHHHHHHH
Confidence 57889999977652 45555554 468999999998887665532 456777878632 2222
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++-
T Consensus 74 ~~~~g~iDilVnnAG 88 (250)
T d1ydea1 74 IRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHhcCCCCEEEeccc
Confidence 2257899999875
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=84.94 E-value=1.9 Score=32.88 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCce
Q 022451 100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD 177 (297)
..+.++||+||+|+-+- ...+.+. + .+|+.+..+++-.+...+.|... ..++...-|- .....+|
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~-g-~~i~I~nRt~~ka~~l~~~~~~~------~~~~~~~~~~-----~~~~~~d 81 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSL-D-CAVTITNRTVSRAEELAKLFAHT------GSIQALSMDE-----LEGHEFD 81 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-T-CEEEEECSSHHHHHHHHHHTGGG------SSEEECCSGG-----GTTCCCS
T ss_pred CCCCCEEEEECCcHHHHHHHHHhccc-c-eEEEeccchHHHHHHHHHHHhhc------cccccccccc-----ccccccc
Confidence 45679999999986542 3444443 3 47999999887665554444322 1233332221 1235699
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
+||.-.+
T Consensus 82 liIN~Tp 88 (170)
T d1nyta1 82 LIINATS 88 (170)
T ss_dssp EEEECCS
T ss_pred eeecccc
Confidence 9998765
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=84.77 E-value=0.25 Score=41.15 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=66.6
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC----------------------------------------CCcEEEEEECCHHHHH
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK----------------------------------------TVEKVVMCDIDEEVVE 140 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~----------------------------------------~~~~v~~VEid~~vi~ 140 (297)
..+..++|--||+|+++.+++-.. ...++.+.|+|+.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 446679999999999987765310 0124567888888888
Q ss_pred HHHh---hhhhccCCCCCCCeEEEEcchHHHHh----ccCCCceEEEEcCCCCCCCC----CccCcccHHHHHHHHcccC
Q 022451 141 FCKS---YLVVNKEAFSDPRLELVINDARAELE----SRKESYDVIIGDLADPIEGG----PCYKLYTKSFYEFVVKPRL 209 (297)
Q Consensus 141 ~a~~---~f~~~~~~~~~~rv~~~~~Da~~~l~----~~~~~yD~Ii~D~~~~~~~~----p~~~L~t~ef~~~~~~~~L 209 (297)
.|++ +....+ .+..+++...|.++.-. .....+++|+++++=..+-+ ....++ .+|+.. +++.|
T Consensus 129 ~A~~~r~n~~~Ag---l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~-~~~~~~-l~~~~ 203 (249)
T d1o9ga_ 129 AARRLRERLTAEG---GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV-AGLLRS-LASAL 203 (249)
T ss_dssp HHHHHHHHHHHTT---SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH-HHHHHH-HHHHS
T ss_pred HHHHHHHHHHHcC---CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH-HHHHHH-HHccC
Confidence 8753 443222 23568888888754221 12456789999887211101 001222 356666 67777
Q ss_pred CCCcEEEEe
Q 022451 210 NPEGIFVTQ 218 (297)
Q Consensus 210 ~pgGvl~~~ 218 (297)
...-++++.
T Consensus 204 p~~s~~~it 212 (249)
T d1o9ga_ 204 PAHAVIAVT 212 (249)
T ss_dssp CTTCEEEEE
T ss_pred CCCcEEEEe
Confidence 666666554
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.67 E-value=1.6 Score=31.22 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCCCeEEEEccchhH-HHHHHHhcCCCcEEEEEEC--------CHHHHHHHHhhhh
Q 022451 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDI--------DEEVVEFCKSYLV 147 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~-~~~~l~~~~~~~~v~~VEi--------d~~vi~~a~~~f~ 147 (297)
..|++|++||+|--+ =....+... ..+|+.+|. |+++.+.+++.+.
T Consensus 20 ~~p~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~ 74 (117)
T d1onfa2 20 KESKKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRKFDESVINVLENDMK 74 (117)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCchHHHHHHHHHHhc-cccceeeehhccccccccHHHHHHHHHHHH
Confidence 468999999997433 223333333 579999997 6667777777654
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=84.40 E-value=3.1 Score=29.98 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=45.8
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFV 204 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~-~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~ 204 (297)
-+|.+||=|+......++.+...+ -+ .+ ...|+.+.+.. ...+||+|++|..-|. .-..++.+.
T Consensus 7 ~kILiVDD~~~~~~~l~~~L~~~g-----~~-~v~~a~~~~~al~~l~~~~~dlii~D~~mP~-------~~G~el~~~- 72 (129)
T d1p6qa_ 7 IKVLIVDDQVTSRLLLGDALQQLG-----FK-QITAAGDGEQGMKIMAQNPHHLVISDFNMPK-------MDGLGLLQA- 72 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTT-----CS-CEECCSSHHHHHHHHHTSCCSEEEECSSSCS-------SCHHHHHHH-
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC-----Ce-EEEEECCHHHHHHHHHhCCCCeEEeeeecCC-------CChHHHHHH-
Confidence 479999999999999988876432 11 23 34566665543 2467999999987543 224478887
Q ss_pred Hccc
Q 022451 205 VKPR 208 (297)
Q Consensus 205 ~~~~ 208 (297)
+++.
T Consensus 73 lr~~ 76 (129)
T d1p6qa_ 73 VRAN 76 (129)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 6653
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.16 E-value=1.9 Score=30.94 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=50.0
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|..||=|+.+.+..++.+...+ =.+ ....|+.+.+.. ...+||+|++|..-|. .-..++.+. ++
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g-----~~v-~~a~~~~eal~~~~~~~~dlvl~D~~mP~-------~~G~el~~~-ir 68 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSG-----FEV-ATAVDGAEALRSATENRPDAIVLDINMPV-------LDGVSVVTA-LR 68 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHHHHSCCSEEEEESSCSS-------SCHHHHHHH-HH
T ss_pred EEEEEECCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHhCCCCEEEEEeeccC-------cccHHHHHH-HH
Confidence 79999999999999998876431 122 255677766644 2467999999986543 223477777 66
Q ss_pred ccCCCCcEEEEe
Q 022451 207 PRLNPEGIFVTQ 218 (297)
Q Consensus 207 ~~L~pgGvl~~~ 218 (297)
+.-..=-++++.
T Consensus 69 ~~~~~~piI~lt 80 (121)
T d1ys7a2 69 AMDNDVPVCVLS 80 (121)
T ss_dssp HTTCCCCEEEEE
T ss_pred hcCCCCEEEEEE
Confidence 543322344443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.11 E-value=5.2 Score=32.20 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=49.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
+.|.+|+-|++.|. +++.+++. ..+|..++.+++-++.+.+.+. .+..++..|..+ +++.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~ 74 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELA--------DAARYVHLDVTQPAQWKAAVDTA 74 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTG--------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh--------CcceEEEeecCCHHHHHHHHHHH
Confidence 56889999987662 45666664 4689999999988876665442 346677777532 2222
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-.+.|+++.++.
T Consensus 75 ~~~~g~idilinnAG 89 (244)
T d1nffa_ 75 VTAFGGLHVLVNNAG 89 (244)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCCeEEEECCc
Confidence 2357899998875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.94 E-value=1.6 Score=35.92 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
+.|.+|+.|++.|. +++.+++. ..+|..++.+++-++.+.+-+.... ....++..+..|..+ +++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC--CCCCceEEEEccCCCHHHHHHHHHHH
Confidence 46888888876552 45555554 4689999999988877766554221 123578888888632 2221
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++-
T Consensus 80 ~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHhCCceEEEeCCc
Confidence 2357899999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.57 E-value=4.6 Score=32.68 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
++|.+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+-+ .+++..+..|..+ +++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~--------~~~~~~~~~Dvt~~~~v~~~~~~~ 73 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAAEI--------GPAACAIALDVTDQASIDRCVAEL 73 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHHHH--------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh--------CCceEEEEeeCCCHHHHHHHHHHH
Confidence 56889999977653 45555554 478999999988776555433 2467777877632 2221
Q ss_pred --cCCCceEEEEcCCC
Q 022451 172 --RKESYDVIIGDLAD 185 (297)
Q Consensus 172 --~~~~yD~Ii~D~~~ 185 (297)
.-++.|+++.++..
T Consensus 74 ~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 74 LDRWGSIDILVNNAAL 89 (256)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCccEEEeeccc
Confidence 23679999998763
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.45 E-value=6.8 Score=28.85 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=53.9
Q ss_pred eEEEEccch-h-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhccCCCceEEEE
Q 022451 105 TIFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG 181 (297)
Q Consensus 105 ~VL~iG~G~-G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~-~Da~~~l~~~~~~yD~Ii~ 181 (297)
+|-+||+|. | .++..++...-..++..+|++++..+.-..-+..... ..+.+.++.. +|- +-+ ...|+|++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~-~~~~~~~i~~~~d~-~~~----~~adiVvi 75 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GIDKYPKIVGGADY-SLL----KGSEIIVV 75 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH-TTTCCCEEEEESCG-GGG----TTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc-ccCCCCccccCCCH-HHh----ccccEEEE
Confidence 688999862 2 3344444344457899999999886532211111000 0112234443 452 222 44799998
Q ss_pred cCCCCCCCCCc-cCcc--cHHHHHHHHc--ccCCCCcEEEEecC
Q 022451 182 DLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG 220 (297)
Q Consensus 182 D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGvl~~~~~ 220 (297)
.+..|...++. ..++ +...++.++. ....|++++++-++
T Consensus 76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 87654422221 0111 1112222111 33478998877654
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.34 E-value=2.1 Score=31.37 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=49.3
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|.+||=|+.+.+..++.+...+ =++. ...|+.+.+.. ...+||+|++|..-|. .-..++++. ++
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~eAl~~l~~~~~dlvilD~~mp~-------~~G~e~~~~-lr 67 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMKG-----IKVE-SAERGKEAYKLLSEKHFNVVLLDLLLPD-------VNGLEILKW-IK 67 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHT-----CEEE-EESSHHHHHHHHHHSCCSEEEEESBCSS-------SBHHHHHHH-HH
T ss_pred EEEEEecCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHhhccccccchHHHhhhh-------hhHHHHHHH-HH
Confidence 68899999999999999886542 1233 45677666543 2357999999976543 223477777 66
Q ss_pred ccCCCCc-EEEE
Q 022451 207 PRLNPEG-IFVT 217 (297)
Q Consensus 207 ~~L~pgG-vl~~ 217 (297)
+. .|+= ++++
T Consensus 68 ~~-~~~~piI~l 78 (137)
T d1ny5a1 68 ER-SPETEVIVI 78 (137)
T ss_dssp HH-CTTSEEEEE
T ss_pred Hh-CCCCCEEEE
Confidence 54 4443 4443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=83.32 E-value=0.79 Score=38.12 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=41.5
Q ss_pred eEEEEccchhHHHHHHHhc--CCCcEEEEEE-CCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc--cCCCce
Q 022451 105 TIFIMGGGEGSTAREILRH--KTVEKVVMCD-IDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES--RKESYD 177 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~--~~~~~v~~VE-id~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~--~l~~--~~~~yD 177 (297)
+||+.| |+|.++..+.+. ....+|+++| ++..-.......+. ..++++++.+|..+ .+.. ...++|
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~------~~~~~~~i~~Di~~~~~l~~~~~~~~~d 74 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS------SLGNFEFVHGDIRNKNDVTRLITKYMPD 74 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH------TTCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh------ccCCcEEEEcccCCHHHHHHHHHhcCCc
Confidence 699988 567776544431 1246899988 32222111111111 23689999999853 2222 123589
Q ss_pred EEEEcCC
Q 022451 178 VIIGDLA 184 (297)
Q Consensus 178 ~Ii~D~~ 184 (297)
.|++-+.
T Consensus 75 ~Vih~aa 81 (338)
T d1orra_ 75 SCFHLAG 81 (338)
T ss_dssp EEEECCC
T ss_pred eEEeecc
Confidence 9998765
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=83.10 E-value=1.5 Score=32.33 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=45.1
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE-EEcchHHH---Hhc-----cCCCceEEEEcCCCCCCCCCccCccc
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL-VINDARAE---LES-----RKESYDVIIGDLADPIEGGPCYKLYT 197 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~-~~~Da~~~---l~~-----~~~~yD~Ii~D~~~~~~~~p~~~L~t 197 (297)
++|..||=|+...+..++.+...+ ...++ ...|+.+. ++. ...+||+|++|..-|. .-.
T Consensus 3 krILiVDD~~~~~~~l~~~L~~~g-----~~~~v~~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~-------~dG 70 (140)
T d1k68a_ 3 KKIFLVEDNKADIRLIQEALANST-----VPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLDLNLPK-------KDG 70 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCS-----SCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-------SCH
T ss_pred CcEEEEECCHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHhHHhhccCCCCEEEEeecccc-------ccC
Confidence 589999999999999999886432 22333 34565554 432 2356999999987553 223
Q ss_pred HHHHHHHHcc
Q 022451 198 KSFYEFVVKP 207 (297)
Q Consensus 198 ~ef~~~~~~~ 207 (297)
.++.+. +++
T Consensus 71 ~el~~~-ir~ 79 (140)
T d1k68a_ 71 REVLAE-IKS 79 (140)
T ss_dssp HHHHHH-HHH
T ss_pred hHHHHH-HHh
Confidence 477777 554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.03 E-value=5.3 Score=32.19 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~~- 171 (297)
+.|.+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+.+.... ..++..+..|..+ +++.
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKY----GVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHh----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 56889999977653 45566654 4689999999887765554432111 2467778888632 2222
Q ss_pred --cCCCceEEEEcCC
Q 022451 172 --RKESYDVIIGDLA 184 (297)
Q Consensus 172 --~~~~yD~Ii~D~~ 184 (297)
.-++.|+++.++-
T Consensus 78 ~~~~g~iDiLVnnAG 92 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAG 92 (251)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCCCEEEECCC
Confidence 2357999999875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=82.68 E-value=6 Score=29.89 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=66.3
Q ss_pred CeEEEEccc--hhHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEE
Q 022451 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (297)
Q Consensus 104 ~~VL~iG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~ 181 (297)
.+|-+||+| +..+++.|++. .-+|.+.|.+++-++...+.-... ....-.....+... .-...|.|++
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~-~~~~~~~ii~ 72 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKG-------TKVLGAHSLEEMVS-KLKKPRRIIL 72 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTT-------SSCEECSSHHHHHH-HBCSSCEEEE
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccc-------ccccchhhhhhhhh-hhcccceEEE
Confidence 578999998 44567777775 357999999999887665532111 11111222233332 2356788888
Q ss_pred cCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
..++.. . ..+.++. +...|++|-+++ .... .......++.+.+.+.
T Consensus 73 ~~~~~~------~--v~~v~~~-l~~~~~~g~iii-d~sT----~~~~~~~~~~~~~~~~ 118 (176)
T d2pgda2 73 LVKAGQ------A--VDNFIEK-LVPLLDIGDIII-DGGN----SEYRDTMRRCRDLKDK 118 (176)
T ss_dssp CSCTTH------H--HHHHHHH-HHHHCCTTCEEE-ECSC----CCHHHHHHHHHHHHHT
T ss_pred ecCchH------H--HHHHHHH-HHhccccCcEEE-ecCc----chhHHHHHHHHHHHhc
Confidence 776421 1 2345666 678888877654 4321 2344445666666554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=2.7 Score=34.04 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=51.3
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~~- 171 (297)
++|.||+-|++.|. +++.+++. ..+|..++.+++-++.+.+-+... ....++..+..|..+. ++.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQ---FEPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTT---SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHh---cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence 46888999976553 34455543 578999999998877666544321 1235788888886432 221
Q ss_pred --cCCCceEEEEcCCC
Q 022451 172 --RKESYDVIIGDLAD 185 (297)
Q Consensus 172 --~~~~yD~Ii~D~~~ 185 (297)
.-++.|+++.++..
T Consensus 77 ~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 77 VDHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCcCeecccccc
Confidence 23679999988763
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.34 E-value=9.7 Score=30.48 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=49.5
Q ss_pred CCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh---
Q 022451 103 PKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE--- 170 (297)
Q Consensus 103 ~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~--- 170 (297)
+|-+|+-|++.|. +++.+++. ..+|.+++.+++-++.+.+.+... ..++..+..|..+. ++
T Consensus 2 gKValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~l~~~-----g~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREA-----GVEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-----CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 4556777865543 34555554 468999999998887766655432 25788888886322 21
Q ss_pred ccCCCceEEEEcCC
Q 022451 171 SRKESYDVIIGDLA 184 (297)
Q Consensus 171 ~~~~~yD~Ii~D~~ 184 (297)
+.-.+.|+++.++-
T Consensus 75 ~~~g~iDilVnnAG 88 (257)
T d2rhca1 75 ERYGPVDVLVNNAG 88 (257)
T ss_dssp HHTCSCSEEEECCC
T ss_pred HHhCCCCEEEeccc
Confidence 22467999998875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.25 E-value=0.63 Score=37.42 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCeEEEEccchhHHH-HHHHhcCCCcEEEEEECCHH
Q 022451 103 PKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEE 137 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~-~~l~~~~~~~~v~~VEid~~ 137 (297)
|-+|++||+|-.+++ ..+++..+...|+++|-++.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 568999999966553 34444444468999997653
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=82.04 E-value=1.5 Score=33.14 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=61.1
Q ss_pred eEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEc
Q 022451 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (297)
Q Consensus 105 ~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D 182 (297)
+|.+||||.-+- -..+++..+..++.++|.++...+...+.++.. . +..|..+.+. ...|+|++-
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~---~~~~~~~ll~---~~iD~V~I~ 69 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVS-------A---TCTDYRDVLQ---YGVDAVMIH 69 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCC-------C---CCSSTTGGGG---GCCSEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccc-------c---ccccHHHhcc---cccceeccc
Confidence 789999985331 233444445667889999998887766654322 1 2245555553 258999886
Q ss_pred CCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecCCCCCcCCchHHHHHHHHHHhh
Q 022451 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (297)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~~p~~~~~~~~~~~i~~~l~~~ 241 (297)
.+... -++. +..+|+.|=-+.+.- |. ..+.+...++.+..++.
T Consensus 70 tp~~~------------H~~~-~~~al~~gk~V~~EK-P~--~~~~~e~~~l~~~a~~~ 112 (167)
T d1xeaa1 70 AATDV------------HSTL-AAFFLHLGIPTFVDK-PL--AASAQECENLYELAEKH 112 (167)
T ss_dssp SCGGG------------HHHH-HHHHHHTTCCEEEES-CS--CSSHHHHHHHHHHHHHT
T ss_pred ccccc------------cccc-cccccccccccccCC-CC--cCCHHHHHHHHHHHHHc
Confidence 54211 1122 344555443333332 22 34556667777776654
|
| >d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Escherichia coli [TaxId: 562]
Probab=81.99 E-value=2 Score=30.99 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=47.9
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
-+|.+||=|+...+..++.+...+ -..+ ....|+.+.+.. ...+||+|++|..-|. .-..++++. +
T Consensus 5 lriLvVDD~~~~r~~i~~~L~~~g----~~~v-~~a~~g~~a~~~~~~~~~dlii~D~~mP~-------~dG~el~~~-i 71 (128)
T d1jbea_ 5 LKFLVVDDFSTMRRIVRNLLKELG----FNNV-EEAEDGVDALNKLQAGGYGFVISDWNMPN-------MDGLELLKT-I 71 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTT----CCCE-EEESSHHHHHHHHTTCCCCEEEEESCCSS-------SCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCC----CcEE-EEecCchHHHHHHhcCCCCEEEEeccccc-------CCHHHHHHH-H
Confidence 479999999999999999886432 1222 245777776644 3568999999987543 224488888 6
Q ss_pred ccc
Q 022451 206 KPR 208 (297)
Q Consensus 206 ~~~ 208 (297)
++.
T Consensus 72 r~~ 74 (128)
T d1jbea_ 72 RAD 74 (128)
T ss_dssp HC-
T ss_pred HhC
Confidence 653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=2.6 Score=34.37 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCCeEEEEccchhH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 022451 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~------l~-- 170 (297)
++|.+|+-|++.|. +++.+++. ..+|..++.+++-++.+.+.+... ..++..+..|..+. ++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~l~~~-----g~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQL-----GGQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHHHHHHT-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 57888888866543 33444443 578999999998887766655432 25778888886432 21
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
+.-++.|+++.++-
T Consensus 83 ~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 83 ISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHSSCCEEEECCC
T ss_pred HHHcCCCCEeeeCCc
Confidence 12367999998875
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=81.65 E-value=0.6 Score=37.36 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCeEEEEccchhHHH--HHHHhcCCCcEEEEEECC
Q 022451 103 PKTIFIMGGGEGSTA--REILRHKTVEKVVMCDID 135 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~--~~l~~~~~~~~v~~VEid 135 (297)
.|+|++||+|-++++ .+|.+ . ..+|+++|-+
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~-~-G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKI-H-GLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-T-SCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHh-C-CCCEEEEeCC
Confidence 479999999976654 34433 2 4589999964
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.30 E-value=1.2 Score=37.54 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCCCeEEEEccchhHHHHHHHhcC--CCcEEEEEEC----CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--c
Q 022451 101 PNPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--R 172 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~l~~~~--~~~~v~~VEi----d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~--~ 172 (297)
..||+||+.| |+|.++..+.++. ...+|.++|. +...+...+...... ..++++++.+|..+.... .
T Consensus 14 ~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~d~~~~~~~ 88 (341)
T d1sb8a_ 14 AQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEK----QWSNFKFIQGDIRNLDDCNNA 88 (341)
T ss_dssp HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHH----HHTTEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhc----ccCCeeEEeeccccccccccc
Confidence 3688999997 6788776655421 2458999985 223333333332211 136789999998654322 2
Q ss_pred CCCceEEEEcCC
Q 022451 173 KESYDVIIGDLA 184 (297)
Q Consensus 173 ~~~yD~Ii~D~~ 184 (297)
....|.|++...
T Consensus 89 ~~~~~~v~~~~a 100 (341)
T d1sb8a_ 89 CAGVDYVLHQAA 100 (341)
T ss_dssp HTTCSEEEECCS
T ss_pred cccccccccccc
Confidence 345677776554
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=0.48 Score=40.04 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=42.6
Q ss_pred eEEEEccchhHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH---HHhccCCCceE
Q 022451 105 TIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELESRKESYDV 178 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~---~l~~~~~~yD~ 178 (297)
+||+.|+ +|.++..+.++ .+..+|.++|....- .. ...+.++++++.+|... .++...+.+|+
T Consensus 2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~-------~~---~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDA-------IS---RFLNHPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGG-------GG---GGTTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcc-------hh---hhccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence 6999985 77766544432 233579999875321 11 11245899999999753 22222346999
Q ss_pred EEEcCC
Q 022451 179 IIGDLA 184 (297)
Q Consensus 179 Ii~D~~ 184 (297)
|++-+.
T Consensus 71 Vih~a~ 76 (342)
T d2blla1 71 VLPLVA 76 (342)
T ss_dssp EEECBC
T ss_pred cccccc
Confidence 998765
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=81.18 E-value=3.3 Score=35.18 Aligned_cols=77 Identities=27% Similarity=0.390 Sum_probs=44.4
Q ss_pred eEEEEccchhHHHHH----HHhcCCCcEEEEEEC-------------CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 022451 105 TIFIMGGGEGSTARE----ILRHKTVEKVVMCDI-------------DEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~----l~~~~~~~~v~~VEi-------------d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~ 167 (297)
+||+.| |+|.++.+ |++. ...+|+++|. .+.+....+.. ........+.++.++.+|.++
T Consensus 4 KVLITG-~tGfIGs~lv~~LL~~-~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 4 RVLVCG-GAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQS-DGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHH-CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHS-CSSCCTTTTCCCEEEESCTTC
T ss_pred EEEEeC-CCcHHHHHHHHHHHHh-CCCEEEEEecCCcccccchhhhhhhhHHHHhhhh-ccccccccccceEEEECcccC
Confidence 799987 67776654 4443 3568999983 12222222221 111122345789999999753
Q ss_pred H--Hhc---cCCCceEEEEcCC
Q 022451 168 E--LES---RKESYDVIIGDLA 184 (297)
Q Consensus 168 ~--l~~---~~~~yD~Ii~D~~ 184 (297)
. +.. ....+|+|++-+.
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa 102 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCA 102 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCC
T ss_pred HHHhhhhhhccceeehhhcccc
Confidence 2 221 2356899999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.16 E-value=2 Score=30.89 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCCCeEEEEccc-hhHH-HHHHHhcCCCcEEEEEECCH--------HHHHHHHhhhhh
Q 022451 101 PNPKTIFIMGGG-EGST-AREILRHKTVEKVVMCDIDE--------EVVEFCKSYLVV 148 (297)
Q Consensus 101 ~~~~~VL~iG~G-~G~~-~~~l~~~~~~~~v~~VEid~--------~vi~~a~~~f~~ 148 (297)
..|+++++||+| .|.= +..+.+ . ..+|+.+|..+ ++.+.++++|..
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~~-l-G~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~ 76 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYSR-L-GSKVTVVEFQPQIGASMDGEVAKATQKFLKK 76 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH-T-TCEEEEECSSSSSSSSSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCchHHHHHHHHHh-h-CcceeEEEeccccchhhhhhhHHHHHHHHHh
Confidence 458999999987 3332 333333 3 57899999755 777777777653
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=81.13 E-value=1 Score=32.41 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=46.4
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
++|.+||=|+...+..++.+...+ -++ ....|+.+.+.. ...+||+|++|..-|. +-..++.+. +
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g-----~~v-~~a~~~~~al~~~~~~~~dlil~D~~mp~-------~dG~el~~~-i 67 (123)
T d1mb3a_ 2 KKVLIVEDNELNMKLFHDLLEAQG-----YET-LQTREGLSALSIARENKPDLILMDIQLPE-------ISGLEVTKW-L 67 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT-----CEE-EEESCHHHHHHHHHHHCCSEEEEESBCSS-------SBHHHHHHH-H
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHhCCCCEEEEEeccCC-------CcHHHHHHH-H
Confidence 579999999999999999886432 122 245777776543 2357999999986443 224477777 5
Q ss_pred ccc
Q 022451 206 KPR 208 (297)
Q Consensus 206 ~~~ 208 (297)
++.
T Consensus 68 r~~ 70 (123)
T d1mb3a_ 68 KED 70 (123)
T ss_dssp HHS
T ss_pred HhC
Confidence 543
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=81.10 E-value=1.8 Score=32.45 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=43.2
Q ss_pred CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 126 VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 126 ~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
..+|.+||=|+...+..++.+... ...+...+....-.....+||+|++|..-|. +-..++.+. +
T Consensus 13 ~~rILiVDD~~~~~~~l~~~L~~~-------g~~v~~~~~~~~~~~~~~~~DlillD~~mP~-------~dG~el~~~-i 77 (153)
T d1w25a2 13 GGRVLIVDDNERQAQRVAAELGVE-------HRPVIESDPEKAKISAGGPVDLVIVNAAAKN-------FDGLRFTAA-L 77 (153)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTTT-------SEEEEECCHHHHHHHHHSSCSEEEEETTCSS-------SCHHHHHHH-H
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHC-------CCEEEEccHHHHHHHhcCCCCEEEEECcccc-------ccchHHHHH-H
Confidence 468999999999999888877532 2444444332211113467999999987543 223477777 6
Q ss_pred cc
Q 022451 206 KP 207 (297)
Q Consensus 206 ~~ 207 (297)
++
T Consensus 78 r~ 79 (153)
T d1w25a2 78 RS 79 (153)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=80.87 E-value=0.54 Score=38.33 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCCeEEEEccchhH-H-HHHHHhcCCCcEEEEEECCH
Q 022451 102 NPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 102 ~~~~VL~iG~G~G~-~-~~~l~~~~~~~~v~~VEid~ 136 (297)
..++||++|||+-+ . +..|++ .+..+++.||-|.
T Consensus 29 ~~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDT 64 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred hCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEECCcc
Confidence 35799999998543 3 455555 4689999999664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.80 E-value=1 Score=35.47 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=63.8
Q ss_pred CeEEEEccch--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC------------CCeEEEEc
Q 022451 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD------------PRLELVIN 163 (297)
Q Consensus 104 ~~VL~iG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~~------------~rv~~~~~ 163 (297)
++|.+||+|. .+++..++.. ..+|+.+|.|++.++.+++..... ...... .++... .
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~ 81 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-T 81 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-S
T ss_pred EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-c
Confidence 6899999984 3345555553 468999999999999887765311 000000 012221 2
Q ss_pred chHHHHhccCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHcccCCCCcEEEEecC
Q 022451 164 DARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (297)
Q Consensus 164 Da~~~l~~~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGvl~~~~~ 220 (297)
|..+. -...|+|+=..+.. .-...+.|+. +.+.+.++-+|+.|+.
T Consensus 82 d~~~a----~~~ad~ViEav~E~-------l~~K~~v~~~-l~~~~~~~~ilasnTS 126 (192)
T d1f0ya2 82 DAASV----VHSTDLVVEAIVEN-------LKVKNELFKR-LDKFAAEHTIFASNTS 126 (192)
T ss_dssp CHHHH----TTSCSEEEECCCSC-------HHHHHHHHHH-HTTTSCTTCEEEECCS
T ss_pred hhHhh----hcccceehhhcccc-------hhHHHHHHHH-HhhhcccCceeeccCc
Confidence 22221 23468888665431 1135688999 8999999999999874
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.69 E-value=7.1 Score=27.35 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHH
Q 022451 127 EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVV 205 (297)
Q Consensus 127 ~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~ 205 (297)
.+|..||=|+.+.+..+.++...+ =.+ ....|+.+.+.. ...+||+|++|..-|. .-..++.+. +
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g-----~~v-~~a~~~~~a~~~~~~~~~dliilD~~mp~-------~~g~~~~~~-~ 67 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEG-----YTV-SVTASGAGLREIMQNQSVDLILLDINLPD-------ENGLMLTRA-L 67 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTT-----CEE-EEESSHHHHHHHHHHSCCSEEEEESCCSS-------SCHHHHHHH-H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCC-----CEE-EEECCHHHHHHHHHhcCCCEEeeehhhcc-------chhHHHHHH-H
Confidence 479999999999999999886432 123 355666655533 2467999999987543 122366666 4
Q ss_pred cccCCCCcEEEEe
Q 022451 206 KPRLNPEGIFVTQ 218 (297)
Q Consensus 206 ~~~L~pgGvl~~~ 218 (297)
+. ..+--++++.
T Consensus 68 ~~-~~~~piI~lt 79 (120)
T d1zgza1 68 RE-RSTVGIILVT 79 (120)
T ss_dssp HT-TCCCEEEEEE
T ss_pred hc-cCCCeEEEEE
Confidence 43 3444455544
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=1 Score=37.97 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=42.3
Q ss_pred eEEEEccchhHHHHHHHhc--CCCcEEEEEEC----CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--Hhc--cCC
Q 022451 105 TIFIMGGGEGSTAREILRH--KTVEKVVMCDI----DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES--RKE 174 (297)
Q Consensus 105 ~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEi----d~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~--l~~--~~~ 174 (297)
+||++| |+|.++.++.+. ....+|+++|. ........++. ..++++++.+|..+. +.. ...
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~Dl~d~~~l~~~~~~~ 72 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL--------GGKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH--------HTSCCEEEECCTTCHHHHHHHHHHT
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh--------cCCCCEEEEeecCCHHHHHHHHhcc
Confidence 689999 567776655542 12357999984 22222222211 236899999997543 222 124
Q ss_pred CceEEEEcCC
Q 022451 175 SYDVIIGDLA 184 (297)
Q Consensus 175 ~yD~Ii~D~~ 184 (297)
++|+|++-+.
T Consensus 73 ~~d~ViHlAa 82 (338)
T d1udca_ 73 AIDTVIHFAG 82 (338)
T ss_dssp TCSEEEECCS
T ss_pred CCCEEEECCC
Confidence 6899998664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=80.46 E-value=0.86 Score=35.61 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=27.7
Q ss_pred cCCCCCeEEEEccchhHHHHHHHhcCCCcEEEEEECCHHH
Q 022451 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138 (297)
Q Consensus 99 ~~~~~~~VL~iG~G~G~~~~~l~~~~~~~~v~~VEid~~v 138 (297)
....+++|++||+|..++...........+|+.+|-++..
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 3467899999999987764332221224699999988643
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.43 E-value=1.1 Score=38.62 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=41.9
Q ss_pred CCeEEEEccchhHHHHHHHhc--CCCcEEEEEECC-HHHHHHH----------------HhhhhhccCCCCCCCeEEEEc
Q 022451 103 PKTIFIMGGGEGSTAREILRH--KTVEKVVMCDID-EEVVEFC----------------KSYLVVNKEAFSDPRLELVIN 163 (297)
Q Consensus 103 ~~~VL~iG~G~G~~~~~l~~~--~~~~~v~~VEid-~~vi~~a----------------~~~f~~~~~~~~~~rv~~~~~ 163 (297)
+++||+.|+ +|.++.++.+. ...-+|+++|-- -...... +++-.. .+++++++.+
T Consensus 1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~ 74 (393)
T d1i24a_ 1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-----TGKSIELYVG 74 (393)
T ss_dssp -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-----HCCCCEEEES
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh-----cCCCcEEEEc
Confidence 468999995 67665444331 123689999831 1111111 111111 2368999999
Q ss_pred chHH--HHhc--cCCCceEEEEcCC
Q 022451 164 DARA--ELES--RKESYDVIIGDLA 184 (297)
Q Consensus 164 Da~~--~l~~--~~~~yD~Ii~D~~ 184 (297)
|.++ .+.. .+.++|+|++-+.
T Consensus 75 Dl~d~~~l~~~~~~~~~d~ViHlAa 99 (393)
T d1i24a_ 75 DICDFEFLAESFKSFEPDSVVHFGE 99 (393)
T ss_dssp CTTSHHHHHHHHHHHCCSEEEECCS
T ss_pred cCCCHHHHHHHHHhhcchheecccc
Confidence 9753 2322 1236899998764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.39 E-value=5.3 Score=32.27 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=47.2
Q ss_pred CCCeEEEEccchh---HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 022451 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (297)
Q Consensus 102 ~~~~VL~iG~G~G---~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~------~l~-- 170 (297)
+.|.+|+-|++.| .+++.+++. ..+|..++.+++-++.+.+.++ .+..++..|..+ .++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 74 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELG--------ERSMFVRHDVSSEADWTLVMAAV 74 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHC--------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC--------CCeEEEEeecCCHHHHHHHHHHH
Confidence 4678888887655 245555554 4689999999988776655432 345566666532 221
Q ss_pred -ccCCCceEEEEcCC
Q 022451 171 -SRKESYDVIIGDLA 184 (297)
Q Consensus 171 -~~~~~yD~Ii~D~~ 184 (297)
..-.+.|+++.++-
T Consensus 75 ~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 75 QRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHCSCCEEEECCC
T ss_pred HHHhCCCCeEEeccc
Confidence 22367899999876
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=80.35 E-value=0.6 Score=37.45 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCCeEEEEccchhHHHHH-HHhcCCCcEEEEEECCH
Q 022451 101 PNPKTIFIMGGGEGSTARE-ILRHKTVEKVVMCDIDE 136 (297)
Q Consensus 101 ~~~~~VL~iG~G~G~~~~~-l~~~~~~~~v~~VEid~ 136 (297)
|..++|++||+|-.+++.. .+... .-+|+++|-++
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~ 37 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSP 37 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence 5778999999997766433 23333 46899999754
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=6.5 Score=27.78 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=44.2
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-cCCCceEEEEcCCCCCCCCCccCcccHHHHHHHHc
Q 022451 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK 206 (297)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~~~rv~~~~~Da~~~l~~-~~~~yD~Ii~D~~~~~~~~p~~~L~t~ef~~~~~~ 206 (297)
+|.+||=|+.+.+..++++...+ =++. ...|+.+.+.. ...+||+|++|..-|. .-..++.+. ++
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g-----~~v~-~a~~~~~al~~l~~~~~dlii~D~~mp~-------~~G~~~~~~-~r 69 (121)
T d1xhfa1 4 HILIVEDELVTRNTLKSIFEAEG-----YDVF-EATDGAEMHQILSEYDINLVIMDINLPG-------KNGLLLARE-LR 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTT-----CEEE-EESSHHHHHHHHHHSCCSEEEECSSCSS-------SCHHHHHHH-HH
T ss_pred EEEEEECCHHHHHHHHHHHHHCC-----CEEE-EECChHHHHHHHHhcCCCEEEeecccCC-------ccCcHHHHH-HH
Confidence 79999999999999999886432 1222 44566555433 2367999999986443 223367776 55
Q ss_pred c
Q 022451 207 P 207 (297)
Q Consensus 207 ~ 207 (297)
+
T Consensus 70 ~ 70 (121)
T d1xhfa1 70 E 70 (121)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.04 E-value=3 Score=29.34 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCCCCeEEEEccchhHH--HHHHHhcCCCcEEEEEECCHHH
Q 022451 100 HPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEV 138 (297)
Q Consensus 100 ~~~~~~VL~iG~G~G~~--~~~l~~~~~~~~v~~VEid~~v 138 (297)
...|++|++||+|--++ +..+.+. ..+||.+|..+.+
T Consensus 19 ~~~p~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~i 57 (117)
T d1ebda2 19 GEVPKSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGEI 57 (117)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSSS
T ss_pred hhcCCeEEEECCCccceeeeeeeccc--ccEEEEEEeccee
Confidence 45689999999874443 3444443 4789999976653
|