Citrus Sinensis ID: 022480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcHHHHHHcccccccccccccccccccHHcccccccccccccccccHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccEEEEcccccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHccccccccccccccccccccccccccccHHccccccccccEEEccccccEEEEEEccHccccccccccccccccccccEEEEccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccEEEEEcEEEEEEccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
maftatplfsstasssstalhrskfldsdfaapfshdsfhliNFSRRFYEQGICLSRKNRNILFAsvngtnavsptplksdqdadyipmphvlidqdsnsdatIVQLSFGDRLGALIDTMNALKDLGLDvakgtvntegsvkQTKFFITRldtgrkvedpdLLERIRLTIINNLlkyhpesseqlamgeafgikapekkldvDIATHihvkedgpkrslLYIETADRPGLLVEIMKIIADvnvdvesaeidteglvakdkfhvsyggaalnSSLSQVLVNCLRYYlrrpetdidsy
Flexible Loop (DISEMBL)
maftatplfsstasssstaLHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVngtnavsptpLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAkgtvntegsvkqtkffitrldtgrkvedpdllERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHihvkedgpkrsllYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGaalnsslsQVLVNCLRYYlrrpetdidsy
Low Complexity Region (SEG)
MaftatplfsstasssstalHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered region (IsUnstruct)
************************FLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTN*************DYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP*****LAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR*********
Disordered Region (DISOPRED)
*AFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYE*****SRKNRNIL*************************MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG*********VLVNCLRY************
Disordered Region (DISEMBL)
********************HRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered Region (DISPRO)
**FT*****SSTA***********FLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVS**********DYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	no	no	0.733	0.766	0.594	1e-72
P83643	283	Unknown protein DS12 from	N/A	no	0.733	0.766	0.594	1e-72
Q7NTY6	856	[Protein-PII] uridylyltra	yes	no	0.212	0.073	0.442	4e-05
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.527	0.165	0.284	0.0001
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.527	0.165	0.284	0.0001
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.300	0.093	0.307	0.0005

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 80  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 80  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNS-----S 273
           +L I   DRPGLL  I K++AD  ++V SA+I T G  A+D F VS  GAAL       +
Sbjct: 788 ILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQVS--GAALKDDKTALA 845

Query: 274 LSQVLVNCLR 283
           L   L+  LR
Sbjct: 846 LEAALITALR 855

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 16/172 (9%)

Query: 99  NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR--K 156
            S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG    
Sbjct: 732 GSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFG 791

Query: 157 VEDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKE 212
            E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E
Sbjct: 792 CENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVE 850

Query: 213 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
              +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V 
Sbjct: 851 ASGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 16/172 (9%)

Query: 99  NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGR--K 156
            S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG    
Sbjct: 732 GSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFG 791

Query: 157 VEDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKE 212
            E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E
Sbjct: 792 CENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVE 850

Query: 213 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
              +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V 
Sbjct: 851 ASGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 84  ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 143
           A ++P P V+ID  ++   T+++++  DR G L D  +AL    L ++   + T G ++ 
Sbjct: 851 AIHVP-PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYG-MRA 908

Query: 144 TKFFITRLDTGRKVEDPDLLERIRLTIINNL 174
              F  R   G K+ DP  L R+R T++ +L
Sbjct: 909 VDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
449446279	287	PREDICTED: unknown protein DS12 from 2D-	0.959	0.989	0.717	1e-115
449494163	283	PREDICTED: unknown protein DS12 from 2D-	0.945	0.989	0.710	1e-113
224110178	217	predicted protein [Populus trichocarpa]	0.733	1.0	0.917	1e-110
224097618	218	predicted protein [Populus trichocarpa]	0.736	1.0	0.899	1e-110
388495334	282	unknown [Lotus japonicus]	0.939	0.985	0.717	1e-110
356575488	282	PREDICTED: unknown protein DS12 from 2D-	0.847	0.890	0.789	1e-108
15238305	301	ACT domain-containing protein [Arabidops	0.983	0.966	0.693	1e-108
21592963	301	unknown [Arabidopsis thaliana]	0.847	0.833	0.763	1e-108
356536361	283	PREDICTED: unknown protein DS12 from 2D-	0.847	0.886	0.785	1e-107
255560331	214	amino acid binding protein, putative [Ri	0.719	0.995	0.897	1e-107

>gi|449446279|ref|XP_004140899.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/297 (71%), Positives = 246/297 (82%), Gaps = 13/297 (4%)

Query: 1   MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLS-RKN 59
           M  +++   +S+ +S S    RS+F + +F A   H          R +  G  L+    
Sbjct: 3   MPTSSSTFIASSYTSPSPFPCRSRFFEPEFVAHVPH----------RCFGGGARLAFLLK 52

Query: 60  RNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDT 119
            NIL AS NG NAVSP  L  DQD+  +PMP VLIDQDS+S+ATIV++SFGDRLGALIDT
Sbjct: 53  WNILSASTNGLNAVSPASLMFDQDS--VPMPIVLIDQDSDSNATIVEVSFGDRLGALIDT 110

Query: 120 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179
           M ALKDLGLDVAKGTV+TEGSVKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHP
Sbjct: 111 MRALKDLGLDVAKGTVSTEGSVKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHP 170

Query: 180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIA 239
           ESS+QLAMGEAFGI+ PEKKLDVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++A
Sbjct: 171 ESSQQLAMGEAFGIQPPEKKLDVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLA 230

Query: 240 DVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           D+N+DVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 231 DINIDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494163|ref|XP_004159466.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/297 (71%), Positives = 243/297 (81%), Gaps = 17/297 (5%)

Query: 1   MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLS-RKN 59
           M  +++   +S+ +S S    RS+F + +F A   H          R +  G  L+    
Sbjct: 3   MPTSSSTFIASSYTSPSPFPCRSRFFEPEFVAHVPH----------RCFGGGARLAFLLK 52

Query: 60  RNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDT 119
            NIL AS NG NAVSP  L      D +PMP VLIDQDS+S+ATIV++SFGDRLGALIDT
Sbjct: 53  WNILSASTNGLNAVSPASL------DSVPMPIVLIDQDSDSNATIVEVSFGDRLGALIDT 106

Query: 120 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179
           M ALKDLGLDVAKGTV+TEGSVKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHP
Sbjct: 107 MRALKDLGLDVAKGTVSTEGSVKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHP 166

Query: 180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIA 239
           ESS+QLAMGEAFGI+ PEKKLDVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++A
Sbjct: 167 ESSQQLAMGEAFGIQPPEKKLDVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLA 226

Query: 240 DVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           D+N+DVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 227 DINIDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110178|ref|XP_002315438.1| predicted protein [Populus trichocarpa] gi|222864478|gb|EEF01609.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 208/217 (95%)

Query: 80  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
           S+QDAD +PMP VLIDQDS+SDATIVQLSFGDRLGALIDTMNALK LGLDVAKGTV T+G
Sbjct: 1   SEQDADLVPMPVVLIDQDSDSDATIVQLSFGDRLGALIDTMNALKHLGLDVAKGTVLTDG 60

Query: 140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
            VKQTKFFITRLDTGRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEKK
Sbjct: 61  PVKQTKFFITRLDTGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEKK 120

Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
           LDVDI TH+HVKEDGPKRSLL IETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAKD
Sbjct: 121 LDVDITTHVHVKEDGPKRSLLCIETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKD 180

Query: 260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           KFHVSY GAAL SSLSQVLVNCLRYYLRRPETDIDSY
Sbjct: 181 KFHVSYRGAALTSSLSQVLVNCLRYYLRRPETDIDSY 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097618|ref|XP_002311013.1| predicted protein [Populus trichocarpa] gi|222850833|gb|EEE88380.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/218 (89%), Positives = 210/218 (96%)

Query: 79  KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 138
           K +QDAD +P+P VLIDQDS+S++TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV TE
Sbjct: 1   KPEQDADGVPIPVVLIDQDSDSESTIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVLTE 60

Query: 139 GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEK 198
           G VKQTKFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEK
Sbjct: 61  GPVKQTKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEK 120

Query: 199 KLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 258
           KLDVDI TH+HVKEDGPKRSLL +ETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAK
Sbjct: 121 KLDVDITTHVHVKEDGPKRSLLCVETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAK 180

Query: 259 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD +SY
Sbjct: 181 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDTESY 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495334|gb|AFK35733.1| unknown [Lotus japonicus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/290 (71%), Positives = 235/290 (81%), Gaps = 12/290 (4%)

Query: 9   FSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVN 68
           F++   + S A+H    +    + P   D+F         +     LSR N+NIL AS  
Sbjct: 3   FTNAFIAPSFAVHAGSRVSDPLSIPLPSDAF---------FRSRPSLSR-NKNILNASAY 52

Query: 69  GTNAVSPTPL--KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDL 126
             NAV    L  K ++D + +PMP VLIDQDS+S+ATIVQLSFGDRLGALIDTM ALKDL
Sbjct: 53  DLNAVGSASLVSKFNRDHESVPMPMVLIDQDSDSEATIVQLSFGDRLGALIDTMKALKDL 112

Query: 127 GLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLA 186
           GLDV+KGTV+TEGSVKQTKFFIT+ +TGRKVEDPD+LERIRLTII+NLLKYHPESSEQLA
Sbjct: 113 GLDVSKGTVSTEGSVKQTKFFITQSNTGRKVEDPDMLERIRLTIISNLLKYHPESSEQLA 172

Query: 187 MGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVE 246
           MGE FGIKAP KKLD+D AT I VKEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVE
Sbjct: 173 MGEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVE 232

Query: 247 SAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           SAEIDTEGL+AKDKFHVSYGGAALNSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 233 SAEIDTEGLIAKDKFHVSYGGAALNSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575488|ref|XP_003555872.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/252 (78%), Positives = 220/252 (87%), Gaps = 1/252 (0%)

Query: 45  SRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATI 104
           S  F+     LSR ++NIL+AS    NAV    L+S  + D +PMP VLIDQ+S+S+ATI
Sbjct: 32  SDAFFRSPTSLSR-DKNILYASAYDLNAVGSASLQSGDNPDSLPMPIVLIDQESDSEATI 90

Query: 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLE 164
           VQLSFG+RLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFIT+ DTGRKVEDPD+LE
Sbjct: 91  VQLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLE 150

Query: 165 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET 224
           RIRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I VKEDGPKRSLLYIET
Sbjct: 151 RIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIET 210

Query: 225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284
           ADRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGAALNSS+SQVLVNCLRY
Sbjct: 211 ADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMSQVLVNCLRY 270

Query: 285 YLRRPETDIDSY 296
           YLR PETDIDSY
Sbjct: 271 YLRTPETDIDSY 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238305|ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thaliana] gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis thaliana] gi|9758449|dbj|BAB08978.1| unnamed protein product [Arabidopsis thaliana] gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis thaliana] gi|21389645|gb|AAM48021.1| putative protein [Arabidopsis thaliana] gi|332003394|gb|AED90777.1| ACT domain-containing protein [Arabidopsis thaliana] gi|347949480|gb|AEP31953.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/297 (69%), Positives = 242/297 (81%), Gaps = 6/297 (2%)

Query: 3   FTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGIC--LSRKNR 60
           F+ T   SS AS  S+A+ R     +  A+P   D    +   RR +  G+   L++  +
Sbjct: 8   FSVTQFSSSLASRPSSAISRQTRFPAQIASP---DLSPALFDDRRKFVGGVMSLLTKSIK 64

Query: 61  NILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDT 119
           N ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +ATIVQLSFG+RLGALIDT
Sbjct: 65  NRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDT 124

Query: 120 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 179
           M ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDLLE+IRLTIINNLLKYHP
Sbjct: 125 MRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDLLEQIRLTIINNLLKYHP 184

Query: 180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIA 239
           E SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL IETADRPGL+VE++K++A
Sbjct: 185 ECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMA 244

Query: 240 DVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           DVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct: 245 DVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592963|gb|AAM64912.1| unknown [Arabidopsis thaliana]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/254 (76%), Positives = 224/254 (88%), Gaps = 3/254 (1%)

Query: 46  RRFYEQGIC--LSRKNRNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDA 102
           RR +  G+   L++  +N ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +A
Sbjct: 48  RRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEA 107

Query: 103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDL 162
           TIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDL
Sbjct: 108 TIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDL 167

Query: 163 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYI 222
           LE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL I
Sbjct: 168 LEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVI 227

Query: 223 ETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCL 282
           ETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCL
Sbjct: 228 ETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCL 287

Query: 283 RYYLRRPETDIDSY 296
           RY+LRRPETDIDSY
Sbjct: 288 RYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536361|ref|XP_003536707.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/252 (78%), Positives = 218/252 (86%), Gaps = 1/252 (0%)

Query: 45  SRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATI 104
           S  F+     LSR ++N L AS    NAV    L+S  + D +PMP VLIDQ+S+S+ATI
Sbjct: 33  SDAFFRSPTSLSR-DKNFLKASAYDLNAVGSASLQSGDNPDSVPMPIVLIDQESDSEATI 91

Query: 105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLE 164
           VQLSFGDRLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFIT+ DTGRKVEDPD+LE
Sbjct: 92  VQLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLE 151

Query: 165 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET 224
           RIRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I VKEDGPKRSLLYIET
Sbjct: 152 RIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIET 211

Query: 225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 284
           ADRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGAALNSS++QVLVNCLRY
Sbjct: 212 ADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMAQVLVNCLRY 271

Query: 285 YLRRPETDIDSY 296
           YLR PETDIDSY
Sbjct: 272 YLRTPETDIDSY 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560331|ref|XP_002521182.1| amino acid binding protein, putative [Ricinus communis] gi|223539629|gb|EEF41213.1| amino acid binding protein, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/214 (89%), Positives = 207/214 (96%), Gaps = 1/214 (0%)

Query: 83  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 142
           DAD +PMP +LIDQDS+SDAT VQ+SFGDRLGALIDTM ALKDLGLDVAKG+V TEGSVK
Sbjct: 2   DAD-VPMPVLLIDQDSDSDATSVQVSFGDRLGALIDTMKALKDLGLDVAKGSVLTEGSVK 60

Query: 143 QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDV 202
           Q KFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPE+KLDV
Sbjct: 61  QIKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPERKLDV 120

Query: 203 DIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH 262
           DIATHIHVK+DGPKRSLLYIETADRPGLLVE++KI+AD+NVDVESAEIDTEGLVAKDKFH
Sbjct: 121 DIATHIHVKDDGPKRSLLYIETADRPGLLVEMIKIMADINVDVESAEIDTEGLVAKDKFH 180

Query: 263 VSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
           VSY GAALNSS+SQVLVNCLRYYLRRPETD+DSY
Sbjct: 181 VSYRGAALNSSMSQVLVNCLRYYLRRPETDVDSY 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.847	0.833	0.763	1e-98
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.733	0.748	0.649	8.6e-72
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.270	0.175	0.296	5.8e-09
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.270	0.175	0.308	5.4e-08
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.273	0.180	0.268	2.3e-07
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.280	0.191	0.285	7.6e-07
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.270	0.181	0.333	2.1e-06
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.280	0.174	0.273	4.3e-06
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.375	0.245	0.243	1.2e-05
TIGR_CMR|SPO_0397	908	SPO_0397 "protein-P-II uridyly	0.554	0.180	0.285	0.00013

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 194/254 (76%), Positives = 224/254 (88%)

Query:    46 RRFYEQGIC--LSRKNRNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDA 102
             RR +  G+   L++  +N ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +A
Sbjct:    48 RRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEA 107

Query:   103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDL 162
             TIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDL
Sbjct:   108 TIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDL 167

Query:   163 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYI 222
             LE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL I
Sbjct:   168 LEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVI 227

Query:   223 ETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCL 282
             ETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCL
Sbjct:   228 ETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCL 287

Query:   283 RYYLRRPETDIDSY 296
             RY+LRRPETDIDSY
Sbjct:   288 RYFLRRPETDIDSY 301

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 141/217 (64%), Positives = 175/217 (80%)

Query:    80 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 139
             S  D+D +P P V+IDQDS+ DAT+++++FGDRLGAL+DTMNALK+LGL+V K  V  + 
Sbjct:    74 SAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDS 133

Query:   140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
             S K  KF ITR D+GRKVEDP+LLE IRLT+INNLL++HPESS QLAMG AFG+  P + 
Sbjct:   134 SGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEP 193

Query:   200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
             +DVDIATHI +++DGP RSLL+IE+ADRPGLLVE++KII+D++V VES E DTEGL+AK 
Sbjct:   194 IDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKV 253

Query:   260 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 296
             KFHVSY   AL   L QVL N LRY+LRRP TD  S+
Sbjct:   254 KFHVSYRNKALIKPLQQVLANSLRYFLRRPSTDESSF 290

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V+ID +   D T++++   ++ G L++ +  L +L L + K  ++++G      F +T
Sbjct:    25 PRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84

Query:   150 RLDTGRKVEDPDLLERIRLTI 170
               D G KV D  +LE IR ++
Sbjct:    85 DQD-GNKVTDEIVLEYIRKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
 Identities = 25/81 (30%), Positives = 45/81 (55%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V+ID DS   AT++++   +  G L++ +  L DL L + K  ++++G      F +T
Sbjct:    25 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84

Query:   150 RLDTGRKVEDPDLLERIRLTI 170
               D G KV D  +L+ I+ ++
Sbjct:    85 DQD-GNKVTDEVVLDYIQKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 22/82 (26%), Positives = 45/82 (54%)

Query:    89 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 148
             MP V+ID     ++T+V++      G L++++  L D+ L + K  ++++G      F +
Sbjct:    19 MPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHV 78

Query:   149 TRLDTGRKVEDPDLLERIRLTI 170
             + L+ G K+ D +L+  I  +I
Sbjct:    79 SDLN-GDKLTDENLIRYIEKSI 99

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V+ID +++ DAT++Q+   ++ G L++ +  L D+ L + K  ++++G      F + 
Sbjct:    16 PRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75

Query:   150 RLDTGRKVEDPDLLERIRLTIINN 173
               D G K+ D  +L+ I+  I +N
Sbjct:    76 DQD-GNKIRDTQVLDYIQKRIESN 98

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V+ID    S ATIV++    R G L++ +  L DL L + K  ++++G+     F +T
Sbjct:    20 PRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT 79

Query:   150 RLDTGRKVEDPDLLERIRLTI 170
              L+ G K+ D  +L  I  +I
Sbjct:    80 DLN-GNKLNDQSVLRYIEQSI 99

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V +D DS+ + T++++   ++ G L+D +  L DL L ++K  ++++G      F +T
Sbjct:    24 PRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDVFHVT 83

Query:   150 RLDTGRKVEDPDLLERIRLTIINN 173
                 G K+ D  L+  I+  I ++
Sbjct:    84 D-QLGNKLTDRSLILYIQQAICSS 106

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query:    90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
             P V ID  S  + T+V++   ++ G L++ +  L DL L + K  ++++G      F +T
Sbjct:    23 PSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVT 82

Query:   150 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDI 204
                 G KV D   ++ I   ++    K H  +S+    G+  G+ +      ++I
Sbjct:    83 D-QQGNKVTDSKTIDYIE-KVLGP--KGHASASQNTWPGKRVGVHSLGDHTSIEI 133

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|SPO_0397 SPO_0397 "protein-P-II uridylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
 Identities = 50/175 (28%), Positives = 79/175 (45%)

Query:    92 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 149
             + +D D + DAT    +  D  G       AL  +G +V  A+     +G V    F+I 
Sbjct:   707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDA-FWIQ 765

Query:   150 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 209
               + G   E   L  R+   I+  L K    + + L   +   IK  EK  +V   THI 
Sbjct:   766 DAE-GHPYEAARL-PRLSQMILKTL-KGEVVARDALKSRDK--IKKREKAFNVP--THIT 818

Query:   210 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
                +G    +++ ++T DRPGLL ++ + +A  NV + +A I T G    D F+V
Sbjct:   819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-08
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-07
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	3e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	3e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	8e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.003
pfam01842	66	pfam01842, ACT, ACT domain	0.003
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.004

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 83  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSV 141
            A     P  LID    S  T V +   D+ G       AL  L L V    VNT +  V
Sbjct: 649 RALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV 708

Query: 142 KQTKFFITRLDTGRKVEDPDLLERIRLT--IINNLLKYHPESSEQLAMGEAFGIKAPEKK 199
               F +  L       +    E ++    ++  L K     +          ++     
Sbjct: 709 ALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPD--TISARRARRRRLQHFAVP 766

Query: 200 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 259
             V I           K +++ +   DRPGLL  + + + ++ + ++SA+I T G  A+D
Sbjct: 767 PRVTILNTA-----SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAED 821

Query: 260 KFHVS-YGGAALNSSLSQVL 278
            F+V+   G  L     Q L
Sbjct: 822 VFYVTDLFGLKLTDEEEQRL 841

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 34/47 (72%)

Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
           ++L +   DRPGLL ++ +++A++ +++ SA+I T G  A+D F+V+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVT 47

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQ 276
           +++ +   DRPGLL +I +++AD+ +++  A I T G  A D F+V+   G  L+     
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 277 VLVNCLR 283
            L   L 
Sbjct: 61  RLEEALE 67

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 146 FFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIA 205
           F+I     GR  ++P  L R+    I + L       E LA  +    K   +   V   
Sbjct: 777 FWIQDAF-GRDEDEPRRLARLA-KAIEDALSGEVRLPEALA--KRTKPKKRARAFHV--P 830

Query: 206 THIHVKEDGPKR-SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
             + +  +   R +++ +   DRPGLL ++ + ++D+N+++ SA I T G  A D F+V+
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 263
             +++L +   DRPGLL  +  + AD+ + + SA+I T G   +D F V
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 90  PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 149
           P V ID ++++  T+++++  DR G L D   AL DL L++A   + T G      F++T
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 150 RLDTGRKVEDPDLLERIR 167
            L  G K+ +      IR
Sbjct: 891 DL-FGLKITNEARQAAIR 907

Length = 931

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 212 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 271
           ++  +  +L +   DRPGLL  I +++A+  V V +A+I+T G   +D F +   G+ L+
Sbjct: 781 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLS 838

Query: 272 SSLSQV 277
            +  Q+
Sbjct: 839 DNRLQI 844

Length = 856

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 88  PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 140
             P VL    ++ DAT++++   DR G L     AL+  G+DV    V T G+
Sbjct: 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGA 745

Length = 774

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
           L + T DR GLL ++ ++  +  + V  AEI T+G +A + F+V+
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252
           + +E  DRPGLL +I  +IA+  +++ S    T
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 214 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 269
            P  ++L +  ADRPGLL  + + +    VDV  A + T G    D F+V+     
Sbjct: 704 SPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG 759

Length = 774

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254
           L IE  DRPGLL +I  +I++   ++ S   +++ 
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAESKD 41

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 119 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV-EDPDLLERIRLTIINNLLKY 177
           T+ A+  L L++    + T  S      +I   D G  + ++P  +E+IR  +   L   
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR-- 778

Query: 178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMK 236
           +P+             + P +       T + +  D  +  ++L I   DRPGLL  I +
Sbjct: 779 NPDDYP-----TIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833

Query: 237 IIADVNVDVESAEIDTEGLVAKDKFHVS 264
           I  + ++ +++A+I T G   +D F ++
Sbjct: 834 IFLEFDLSLQNAKIATLGERVEDVFFIT 861

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 258
           ++L +   DRPGLL E+   +AD  +++ES    T G  A 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAG 41

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 254
           L +   DRPGLL +++ ++A+  +++ S E  T G
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
PRK04374	869	PII uridylyl-transferase; Provisional	99.96
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.96
PRK03059	856	PII uridylyl-transferase; Provisional	99.96
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.87
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.84
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.83
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.69
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.68
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.67
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.65
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.63
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.62
PRK05007	884	PII uridylyl-transferase; Provisional	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.61
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.59
PRK04374	869	PII uridylyl-transferase; Provisional	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.57
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.55
PRK03059	856	PII uridylyl-transferase; Provisional	99.54
PRK05092	931	PII uridylyl-transferase; Provisional	99.54
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.5
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.48
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.45
PRK03381	774	PII uridylyl-transferase; Provisional	99.44
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.4
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.36
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.33
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.32
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.29
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.26
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.05
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.98
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.97
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.73
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.63
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.52
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.5
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.5
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.43
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.4
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.19
COG4747	142	ACT domain-containing protein [General function pr	98.17
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.15
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.08
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.08
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.04
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.04
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.03
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.99
PRK00194	90	hypothetical protein; Validated	97.99
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.97
PRK00194	90	hypothetical protein; Validated	97.96
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.71
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.65
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.59
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.56
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.52
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.5
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.49
COG3830	90	ACT domain-containing protein [Signal transduction	97.48
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.47
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.44
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.44
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.43
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.36
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.35
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.33
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.32
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.29
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.28
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.25
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.23
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.22
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.21
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.21
COG3830	90	ACT domain-containing protein [Signal transduction	97.19
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.17
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.14
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.13
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.12
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.11
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.09
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.03
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.0
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.0
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.99
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.97
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.94
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.92
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.92
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.91
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.89
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.86
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.84
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.78
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.78
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.77
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.77
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.74
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.74
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.74
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.72
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.71
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.7
cd02116	60	ACT ACT domains are commonly involved in specifica	96.69
PRK08577	136	hypothetical protein; Provisional	96.69
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.64
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.62
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.6
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.58
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.51
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.5
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.48
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.48
PRK08577	136	hypothetical protein; Provisional	96.4
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.34
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.3
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.3
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.24
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.23
PRK07334	403	threonine dehydratase; Provisional	96.2
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.15
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.1
cd02116	60	ACT ACT domains are commonly involved in specifica	96.0
PRK04435	147	hypothetical protein; Provisional	95.98
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.9
PRK04435	147	hypothetical protein; Provisional	95.74
PRK00227	693	glnD PII uridylyl-transferase; Provisional	95.64
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.6
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.6
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.52
PRK07334	403	threonine dehydratase; Provisional	95.46
PRK06635	404	aspartate kinase; Reviewed	95.46
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.37
PRK11899	279	prephenate dehydratase; Provisional	95.25
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.23
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.18
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.14
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.02
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	94.97
PRK06291	465	aspartate kinase; Provisional	94.88
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	94.65
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.43
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.31
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.22
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.2
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.17
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.16
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.15
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.05
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.86
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.72
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.63
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.36
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	93.08
PRK08210	403	aspartate kinase I; Reviewed	92.93
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.77
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	92.71
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.68
PRK08818	370	prephenate dehydrogenase; Provisional	92.49
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.4
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.32
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	92.18
COG1707	218	ACT domain-containing protein [General function pr	92.15
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.12
PLN02551	521	aspartokinase	92.05
COG1707	218	ACT domain-containing protein [General function pr	92.01
PRK07431	587	aspartate kinase; Provisional	91.96
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.84
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.69
PRK06545	359	prephenate dehydrogenase; Validated	91.47
PRK09034	454	aspartate kinase; Reviewed	91.32
PRK06382	406	threonine dehydratase; Provisional	91.28
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.17
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.16
PRK08198	404	threonine dehydratase; Provisional	90.68
PRK06349	426	homoserine dehydrogenase; Provisional	90.58
PRK09181	475	aspartate kinase; Validated	90.55
PRK07431	587	aspartate kinase; Provisional	90.49
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	90.3
COG4747	142	ACT domain-containing protein [General function pr	90.09
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	89.63
PRK06382	406	threonine dehydratase; Provisional	89.6
PRK06545	359	prephenate dehydrogenase; Validated	89.57
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	89.51
PRK11898	283	prephenate dehydratase; Provisional	89.22
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.1
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	88.95
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	88.67
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	88.62
PLN02317	382	arogenate dehydratase	88.51
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	88.46
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	88.41
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	88.09
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	87.93
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	87.76
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.75
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	87.35
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	86.6
COG2150	167	Predicted regulator of amino acid metabolism, cont	85.77
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.57
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	84.98
PRK08198	404	threonine dehydratase; Provisional	84.83
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	84.78
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	84.24
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	83.96
PRK06349	426	homoserine dehydrogenase; Provisional	83.76
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	83.43
PRK11899	279	prephenate dehydratase; Provisional	83.37
PRK09084	448	aspartate kinase III; Validated	82.85
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	82.43
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	82.4
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	82.38
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	81.75
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	81.51
PRK09224	504	threonine dehydratase; Reviewed	81.49
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	80.64
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.54
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	80.31

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=2.1e-32  Score=288.46  Aligned_cols=191  Identities=24%  Similarity=0.290  Sum_probs=167.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      ++|.|.++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|++++. +|+|+|++. +|.++. ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999865 699999996 888874 5799999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  245 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I  245 (296)
                      ++.|.++|.+.... .. .    .+  +.+++...+.++++|.++|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus       765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I  836 (884)
T PRK05007        765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL  836 (884)
T ss_pred             HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence            99999999763211 11 1    11  1234556678899999999875 499999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022480          246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  288 (296)
Q Consensus       246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~  288 (296)
                      ++|||+|.|++|+|+|||++ +|+||+++.+++|+++|+++|..
T Consensus       837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998 89999977889999999999865

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=3e-32  Score=286.44  Aligned_cols=189  Identities=18%  Similarity=0.246  Sum_probs=164.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      ..|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+ .++|+|+|++. +|.++. ++++++|
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l  740 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence            46889999999999999999999999999999999999999999999999655 45799999996 898884 5899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  245 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I  245 (296)
                      ++.|.++|.+.. .....      +  +.+++...+.++++|.++|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus       741 ~~~L~~aL~~~~-~~~~~------~--~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i  811 (854)
T PRK01759        741 EQALTKALNTNK-LKKLN------L--EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL  811 (854)
T ss_pred             HHHHHHHHcCCC-Ccchh------c--cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence            999999997621 11100      1  1123445677889999999875 499999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022480          246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      ++|||+|.|++|+|+|||++ +|+||+++.+++|+++|.++|.
T Consensus       812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~  854 (854)
T PRK01759        812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS  854 (854)
T ss_pred             EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence            99999999999999999998 8999998867999999998863

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=2.2e-29  Score=265.84  Aligned_cols=199  Identities=21%  Similarity=0.313  Sum_probs=167.7

Q ss_pred             CCcEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCC-ChHH
Q 022480           88 PMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPDL  162 (296)
Q Consensus        88 ~~p~V~i~~~~~---~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~-~~~~  162 (296)
                      ..|.|.+.....   .++++|+|+++||||||+++|++|+.+|+||++|+|+|+++++ +|+|+|++. +|.++. ++++
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r  765 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPAR  765 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHH
Confidence            357888877776   5899999999999999999999999999999999999998877 699999996 888754 4589


Q ss_pred             HHHHHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhC
Q 022480          163 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADV  241 (296)
Q Consensus       163 l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~  241 (296)
                      +++|++.|.++|.+. .+....++    +  +.+++...+.+++.|.++++.+ ++|+|+|.|.||||||++|+++|+++
T Consensus       766 ~~~i~~~L~~~L~~~-~~~~~~~~----~--~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~  838 (895)
T PRK00275        766 IEQIREGLTEALRNP-DDYPTIIQ----R--RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF  838 (895)
T ss_pred             HHHHHHHHHHHHcCC-Cccchhhh----h--hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence            999999999999763 22222332    1  1233445567788888888764 59999999999999999999999999


Q ss_pred             CceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCccC
Q 022480          242 NVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDID  294 (296)
Q Consensus       242 gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~~~~~~~  294 (296)
                      |++|+.|+|.|.|++|+|+|||++ +|.++.++ .+++|+++|.++|..+...+.
T Consensus       839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~  893 (895)
T PRK00275        839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKDT  893 (895)
T ss_pred             CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccccC
Confidence            999999999999999999999998 89999876 778999999999977765543

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=2.1e-29  Score=265.31  Aligned_cols=193  Identities=22%  Similarity=0.296  Sum_probs=165.0

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      ..|.|.+++....++++|+|+++||||||++||++|+.+|+||++|+|+|+.++ .+|+|+|++. +|.++.+++++++|
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i  732 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQEL  732 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHH
Confidence            468999988777999999999999999999999999999999999999977555 5799999996 88888777789999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  245 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I  245 (296)
                      ++.|.++|.+.. .....+.    ++.+.+++...+.++++|.++|+.+ ++|+|+|.|.|||||||+|+++|+++|++|
T Consensus       733 ~~~L~~~L~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i  807 (850)
T TIGR01693       733 LQGLVDVLAGLA-KDPDTIS----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSI  807 (850)
T ss_pred             HHHHHHHHcCCC-ccccccc----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeE
Confidence            999999997621 1111111    1100234555677899999999875 499999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ++|+|.|+|++++|+|||++ .|.|+++++++.|+++|.++|
T Consensus       808 ~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       808 QSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999997 899999888899999999876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.4e-28  Score=258.11  Aligned_cols=199  Identities=21%  Similarity=0.302  Sum_probs=168.2

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      .++.|.+.+....++++|+|+++||||||++||++|+.+||||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence            4578889999999999999999999999999999999999999999999987776 699999996 88877677899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCC-CccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD  244 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~-~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~  244 (296)
                      ++.|..++.+. ..+...+.    ++ ..+ ++...+..++.|.++++.+ ++|+|+|.+.||||||++|+++|+++|+|
T Consensus       797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~  870 (931)
T PRK05092        797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN  870 (931)
T ss_pred             HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence            99999988652 22212121    11 112 1345567888999988774 48999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 022480          245 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI  293 (296)
Q Consensus       245 I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~~~~~~  293 (296)
                      |.+|+|.|.|+++.|+|||++ +|.++.++ .+++|+++|..+|..+..|.
T Consensus       871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  921 (931)
T PRK05092        871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA  921 (931)
T ss_pred             EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999998 89999877 78899999999997665543

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.6e-28  Score=255.54  Aligned_cols=188  Identities=20%  Similarity=0.217  Sum_probs=159.7

Q ss_pred             CcEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480           89 MPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        89 ~p~V~i~~-~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      .|.|.+.. .+..+.++|+|+++||||||++||++|+.+|+||++|+|+|+.+++ +|+|+|.++ +|..   ++++++|
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i  751 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRL  751 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHH
Confidence            46777655 7788999999999999999999999999999999999999998877 699999996 6653   3678889


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  245 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I  245 (296)
                      ++.|.++|.+. .+... +.    ++ +.+++...+.++++|.++++.+ ++|+|+|.|.|||||||+|+.+|+++|++|
T Consensus       752 ~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I  824 (869)
T PRK04374        752 AAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRV  824 (869)
T ss_pred             HHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeE
Confidence            99999999762 22111 21    11 2234556778899999888664 699999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022480          246 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       246 ~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      ++|+|.|.|++|+|+|||++ +|.++.++++++|+++|.++|.
T Consensus       825 ~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        825 HDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             EEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999998 8899988866999999999884

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.6e-28  Score=248.06  Aligned_cols=192  Identities=27%  Similarity=0.325  Sum_probs=168.6

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHH
Q 022480           87 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER  165 (296)
Q Consensus        87 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~  165 (296)
                      ...|.|.+......+.++|+|+++|+|.||+.+|+.+...|+||++|+|+|+.+|+ +|+|+|+++ +|.++. +++...
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~  746 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAA  746 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHH
Confidence            35699999988888999999999999999999999999999999999999999985 799999997 898886 688888


Q ss_pred             HHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCC-cEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022480          166 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD  244 (296)
Q Consensus       166 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~-~TvleV~t~DRPGLL~dIt~~La~~gv~  244 (296)
                      ++..|.+++..+...  +      +.+.+.+++..+|+++++|.+.+..++ .|+|||++.||||||++|+++|+++|++
T Consensus       747 ~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~  818 (867)
T COG2844         747 LRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLS  818 (867)
T ss_pred             HHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccc
Confidence            888888888764321  1      122255567778999999999887755 9999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022480          245 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  288 (296)
Q Consensus       245 I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~  288 (296)
                      |++|||+|.|++|+|+|||++ .|.+++.+.++.|.+.|.+++..
T Consensus       819 i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~  863 (867)
T COG2844         819 LHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP  863 (867)
T ss_pred             eeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998 99999888888888888887754

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.3e-27  Score=248.39  Aligned_cols=189  Identities=20%  Similarity=0.255  Sum_probs=157.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  166 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L  166 (296)
                      ..|.|.+......+.++|+|+++||||||+++|++|+.+|+||++|+|+|+.+++ +|+|+|.++ +|. +.+++++++|
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i  741 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLV  741 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHH
Confidence            3578889888999999999999999999999999999999999999999998877 699999995 666 4556899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCC-CCcEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022480          167 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDV  245 (296)
Q Consensus       167 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~-~~~TvleV~t~DRPGLL~dIt~~La~~gv~I  245 (296)
                      ++.|.++|.+. .+....+    .+  +.+++...+..++.|.++++. .++|+|+|.|.||||||++|+.+|+++|++|
T Consensus       742 ~~~l~~~l~~~-~~~~~~~----~~--~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I  814 (856)
T PRK03059        742 EHELAERLAEQ-APLPEPS----KG--RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSV  814 (856)
T ss_pred             HHHHHHHHcCC-CCcchhh----cc--cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeE
Confidence            99999999763 2111111    11  123455667788888877765 4699999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 022480          246 ESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR  287 (296)
Q Consensus       246 ~~AkI~T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~~l~  287 (296)
                      +.|+|.|.|++|+|+|||+  +.++.++ .+++|+++|.++|.
T Consensus       815 ~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        815 HTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             EEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999994  4445444 78899999998874

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=4.9e-27  Score=244.92  Aligned_cols=186  Identities=21%  Similarity=0.209  Sum_probs=153.3

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHH
Q 022480           88 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  167 (296)
Q Consensus        88 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~  167 (296)
                      ..|.|.+..+. .+.++|+|+++||||||++||++|+.+||||++|+|+|.++.++|+|+|.++ +|.+.    .+++|+
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~  659 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR  659 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence            56899999888 8999999999999999999999999999999999999965666899999986 77642    368899


Q ss_pred             HHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCC-CcEEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 022480          168 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  246 (296)
Q Consensus       168 ~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~-~~TvleV~t~DRPGLL~dIt~~La~~gv~I~  246 (296)
                      +.|.++|.++ .+....+...  .+...+++...+..++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++|+||.
T Consensus       660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~  736 (774)
T PRK03381        660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR  736 (774)
T ss_pred             HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence            9999988762 2221222210  0000123445667788888877664 5899999999999999999999999999999


Q ss_pred             EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 022480          247 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       247 ~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~  283 (296)
                      +|+|.|.|++++|+|||++ +|.+++++ +++|+++|.
T Consensus       737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            9999999999999999998 89999987 788888875

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.87  E-value=8.9e-22  Score=148.89  Aligned_cols=72  Identities=28%  Similarity=0.472  Sum_probs=69.1

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR  288 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l~~  288 (296)
                      +|+|+|.|.|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++ +|.||.++ ++++|+++|.++|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999998 99999888 789999999999876

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=1.9e-20  Score=141.62  Aligned_cols=72  Identities=26%  Similarity=0.400  Sum_probs=67.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP  289 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~--T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~~l~~~  289 (296)
                      |+|+|.|.|||||||+|+++|+++|++|++|||+  |+|++++|+|||..+|+||.++ +++.|+++|+++|.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999  9999999999994489999876 7899999999999876

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=2.2e-20  Score=140.32  Aligned_cols=68  Identities=26%  Similarity=0.461  Sum_probs=63.4

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY  284 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~  284 (296)
                      +|+|+|.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||++ +|+||.++ .+++|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999998 89999876 77888888753

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2.3e-16  Score=119.41  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  175 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~  175 (296)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+.+.|+|+|++. +|.++.++++.++|+++|..++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999997 99999999999999999998774

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4e-16  Score=117.21  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=65.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  171 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~  171 (296)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|+|++. +|+|+.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999999999999999999999999999999997 9999988888899988874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.67  E-value=9.7e-16  Score=135.42  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=103.7

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022480           99 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH  178 (296)
Q Consensus        99 ~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~  178 (296)
                      ...+.+|++.|+||||+++.++++|+++||||.+.++...++.|.-++.|.    +.+    ..+.+|+..|...-..  
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~--   74 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE--   74 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence            347789999999999999999999999999999999999999998777773    332    4667788777652211  


Q ss_pred             CCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--e
Q 022480          179 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V  256 (296)
Q Consensus       179 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~--r  256 (296)
                      .++...+     +  +...+     .      ....+..+.++|.+.|||||+++|+++|+++|+||..++..|++.  .
T Consensus        75 ~~L~i~v-----~--~~~~~-----~------~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~  136 (190)
T PRK11589         75 LDLLIVM-----K--RTTAR-----P------RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE  136 (190)
T ss_pred             cCeEEEE-----E--ecccc-----c------cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence            1111000     0  00000     0      011112589999999999999999999999999999999999995  6


Q ss_pred             eeeEEEEE
Q 022480          257 AKDKFHVS  264 (296)
Q Consensus       257 a~D~F~V~  264 (296)
                      ..++|.+.
T Consensus       137 ~~~lf~~~  144 (190)
T PRK11589        137 RPAQLHIQ  144 (190)
T ss_pred             CcccEEEE
Confidence            77788886

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.65  E-value=1.4e-15  Score=161.26  Aligned_cols=151  Identities=16%  Similarity=0.227  Sum_probs=118.1

Q ss_pred             eecccccCCCC-C--CCccceeeeeeecCCCccccc-ccccccccchhhhhccccccCCCC--CCCCCCC---CCCC-CC
Q 022480           20 LHRSKFLDSDF-A--APFSHDSFHLINFSRRFYEQG-ICLSRKNRNILFASVNGTNAVSPT--PLKSDQD---ADYI-PM   89 (296)
Q Consensus        20 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~-~~   89 (296)
                      .++-...+++| +  .-+++|+|.|+|.+|.++... +.+.+     +...+.+++.++..  .....-.   ...+ .+
T Consensus       727 ~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~-----i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~  801 (895)
T PRK00275        727 QLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQ-----IREGLTEALRNPDDYPTIIQRRVPRQLKHFAFP  801 (895)
T ss_pred             HCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHH-----HHHHHHHHHcCCCccchhhhhhhhhhccCCCCC
Confidence            34444555554 2  267999999999999997543 44466     66666666654431  0111100   0122 56


Q ss_pred             cEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHH
Q 022480           90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT  169 (296)
Q Consensus        90 p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~  169 (296)
                      |.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.+++++++|++.
T Consensus       802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~  880 (895)
T PRK00275        802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDA  880 (895)
T ss_pred             CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999996 89888887899999999


Q ss_pred             HHHhhcc
Q 022480          170 IINNLLK  176 (296)
Q Consensus       170 L~~~L~~  176 (296)
                      |.++|.+
T Consensus       881 L~~~L~~  887 (895)
T PRK00275        881 ICEQLDA  887 (895)
T ss_pred             HHHHHhc
Confidence            9998865

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=4.1e-15  Score=112.00  Aligned_cols=72  Identities=25%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCC-CCCCCChHHHHHHHHHHHHhhc
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL  175 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~-g~~l~~~~~l~~L~~~L~~~L~  175 (296)
                      |+|+|+++||||||++|+++|+++||||++|+++|.++.++|+|+|.+. + |.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999998888999999986 6 7777788899999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.62  E-value=3.3e-15  Score=157.91  Aligned_cols=148  Identities=15%  Similarity=0.219  Sum_probs=113.4

Q ss_pred             eeecccccCCCCC---CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCCCCCC-C--CCCCC-CCcE
Q 022480           19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPLKSD-Q--DADYI-PMPH   91 (296)
Q Consensus        19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~p~   91 (296)
                      +.++-...+++|.   .-+++|+|.|.|.+|.++. .+.+.+     |...++.++.+........ .  ....+ .+|.
T Consensus       699 ~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~-----l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~  772 (854)
T PRK01759        699 GAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ-----LEQALTKALNTNKLKKLNLEENHKLQHFHVKTE  772 (854)
T ss_pred             HHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH-----HHHHHHHHHcCCCCcchhccccccccCCCCCCE
Confidence            3344444455542   3689999999999999884 334455     6666666665443211100 0  01122 6789


Q ss_pred             EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480           92 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  171 (296)
Q Consensus        92 V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~  171 (296)
                      |.|+++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|.|.|+.+.|+|+|++. +|.+++++++ ++|++.|.
T Consensus       773 V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~  850 (854)
T PRK01759        773 VRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLL  850 (854)
T ss_pred             EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999996 8999877555 88998887


Q ss_pred             Hhh
Q 022480          172 NNL  174 (296)
Q Consensus       172 ~~L  174 (296)
                      ++|
T Consensus       851 ~~l  853 (854)
T PRK01759        851 SNL  853 (854)
T ss_pred             HHh
Confidence            765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.62  E-value=4.6e-15  Score=157.31  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             CccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCCC-CCCC---CCCCC-CCcEEEEeecCCCCeEEEEE
Q 022480           33 PFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTPL-KSDQ---DADYI-PMPHVLIDQDSNSDATIVQL  107 (296)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~p~V~i~~~~~~~~t~V~V  107 (296)
                      -+++|+|.|+|.+|.++. .+.+.+     +...+.+++.+..... ..+.   ....+ .+|.|.|+++.++.+|+|+|
T Consensus       740 g~alD~F~V~d~~g~~~~-~~~~~~-----I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV  813 (884)
T PRK05007        740 GMAMDTFIVLEPDGSPLS-QDRHQV-----IRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMEL  813 (884)
T ss_pred             CeEEEEEEEECCCCCCCC-HHHHHH-----HHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEE
Confidence            469999999999999873 344455     5555555554432100 0000   01222 67899999999999999999


Q ss_pred             EeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          108 SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       108 ~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .++||||||++|+++|.++|++|+.|+|.|.|+.+.|+|+|++. +|.+++ +++.+.|++.|.++|..
T Consensus       814 ~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        814 IALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             EeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999996 898887 67889999999887753

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=5.5e-15  Score=110.74  Aligned_cols=71  Identities=25%  Similarity=0.343  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      ++|+|+++||||||++++++|+.+|+||++|+|+|++++ .+|+|+|++. +|.++.+++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999999755 4799999986 8887777789999999987653

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=6.4e-15  Score=110.94  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=65.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR  287 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~-g~~L~~~-~~~~L~~~L~~~l~  287 (296)
                      |+|+|.++||||||++|+++|+++|+||..|++.|.|+++.|+|+|++ + |.++.++ .+++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999997 5 8888775 77999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=9e-15  Score=110.69  Aligned_cols=71  Identities=21%  Similarity=0.409  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  175 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~--T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~  175 (296)
                      |+++|.++||||||++|+++|.++|++|+.|+|.  |.|+..+|+|+| +. +|.++.++++++.|++.|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 64 78889888999999999998775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=1.3e-14  Score=109.98  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE  290 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l~~~~  290 (296)
                      +++|.+.||||||++|+++|+++|++|.+|+|.| .|+++.|+|+|++ +|....++.+++|+++|+++|.+.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~~   75 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDSM   75 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchhc
Confidence            6899999999999999999999999999999996 8999999999998 5553334478899999999998754

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.58  E-value=2.6e-14  Score=151.11  Aligned_cols=147  Identities=18%  Similarity=0.142  Sum_probs=111.6

Q ss_pred             eeecccccCCCCC---CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC---CCCCCC--CCCCC-CC
Q 022480           19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT---PLKSDQ--DADYI-PM   89 (296)
Q Consensus        19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~-~~   89 (296)
                      +.++-...++++-   .-++||+|.|+|.+|.+.   +.+.+     +...+++++.+...   ..+.+.  ....+ .+
T Consensus       712 ~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~---~~~~~-----i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  783 (869)
T PRK04374        712 DRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYAD---GDPQR-----LAAALRQVLAGDLQKVRPARRAVPRQLRHFRFA  783 (869)
T ss_pred             HHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCCh---HHHHH-----HHHHHHHHHcCCCCccccccccCcccccCCCCC
Confidence            3444444555443   368999999999998852   22444     66777776655321   011100  01223 66


Q ss_pred             cEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHH
Q 022480           90 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT  169 (296)
Q Consensus        90 p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~  169 (296)
                      |.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.++++ +.|++.
T Consensus       784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~~  861 (869)
T PRK04374        784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRDA  861 (869)
T ss_pred             CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHHH
Confidence            89999999999999999999999999999999999999999999999998888999999996 8888766555 899999


Q ss_pred             HHHhhc
Q 022480          170 IINNLL  175 (296)
Q Consensus       170 L~~~L~  175 (296)
                      |.+.|.
T Consensus       862 L~~~l~  867 (869)
T PRK04374        862 LCACLD  867 (869)
T ss_pred             HHHHhc
Confidence            888763

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.57  E-value=2.8e-14  Score=106.88  Aligned_cols=69  Identities=26%  Similarity=0.334  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l  286 (296)
                      +.|+|.+.||||||++|+.+|+.+|+||.+|+|.|. ++++.|+|+|++ +|.++.++ .+++|++.|+++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999887 599999999997 88888655 7788999988764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=6.8e-14  Score=106.04  Aligned_cols=71  Identities=24%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      +++|+++||||||++++++|+.+|+||++|+|+|+.+ ..+|+|+|++. +|. ..+++++++|++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999998554 55799999986 665 55678999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.54  E-value=4e-14  Score=149.70  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=114.4

Q ss_pred             cccccccCCcceeecccccCCCC---CCCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC--CCCCCC
Q 022480            8 LFSSTASSSSTALHRSKFLDSDF---AAPFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT--PLKSDQ   82 (296)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   82 (296)
                      ||+.++.  .++.++-...++++   ..-++||+|.|+|..|. +...+.+.+     +...+++++.+...  ....+.
T Consensus       691 LFa~i~g--~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~-----i~~~l~~~l~~~~~~~~~~~~~  762 (856)
T PRK03059        691 LFARICG--YFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINL-----VEHELAERLAEQAPLPEPSKGR  762 (856)
T ss_pred             HHHHHHH--HHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHH-----HHHHHHHHHcCCCCcchhhccc
Confidence            4444443  34555556666665   34679999999998887 333334455     77777776655431  011111


Q ss_pred             CC---CCC-CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCC
Q 022480           83 DA---DYI-PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVE  158 (296)
Q Consensus        83 ~~---~~~-~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~  158 (296)
                      .+   ..+ .+|.|.++++.+.++|+|+|+++||||||++||++|+.+|+||++|+|+|.++.++|+|+|...    +..
T Consensus       763 ~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~  838 (856)
T PRK03059        763 LSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLS  838 (856)
T ss_pred             ccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCC
Confidence            01   223 5688999999999999999999999999999999999999999999999998888999999542    245


Q ss_pred             ChHHHHHHHHHHHHhhc
Q 022480          159 DPDLLERIRLTIINNLL  175 (296)
Q Consensus       159 ~~~~l~~L~~~L~~~L~  175 (296)
                      +++++++|++.|.++|.
T Consensus       839 ~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        839 DNRLQIQLETELLDALA  855 (856)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            67899999999988663

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.54  E-value=1e-13  Score=147.89  Aligned_cols=138  Identities=25%  Similarity=0.330  Sum_probs=111.4

Q ss_pred             CccceeeeeeecCCCcccccccccccccchhhhhccccccCCCCC---C----CCCCCCCCC-CCcEEEEeecCCCCeEE
Q 022480           33 PFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPTP---L----KSDQDADYI-PMPHVLIDQDSNSDATI  104 (296)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~-~~p~V~i~~~~~~~~t~  104 (296)
                      =+++|+|.|.|.+|.++...+.+.+     |...+..+..+....   .    .+......+ .+|.|.|+++.+.++|+
T Consensus       771 g~alD~F~V~~~~g~~~~~~~~~~~-----l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~  845 (931)
T PRK05092        771 GRALDTFWIQDAFGRDEDEPRRLAR-----LAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTV  845 (931)
T ss_pred             CeEEEEEEEECCCCCCCCCHHHHHH-----HHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEE
Confidence            4799999999999988655555566     666666655433210   0    010011222 67999999999999999


Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      |.|+++||||||++|+++|+++|+||+.|+|.|.++...|+|+|++. +|.++.++++++.|++.|.++|.+
T Consensus       846 i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998888999999996 899898888999999999998865

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.50  E-value=1.6e-13  Score=145.36  Aligned_cols=136  Identities=20%  Similarity=0.239  Sum_probs=107.5

Q ss_pred             CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC----CCCCC---CCCCCC-CCcEEEEeecCCCCeE
Q 022480           32 APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT----PLKSD---QDADYI-PMPHVLIDQDSNSDAT  103 (296)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~-~~p~V~i~~~~~~~~t  103 (296)
                      .-+++|+|.|.|.+|.+....+.+.+     +...+..++.+...    ....+   .....+ .+|.|.|+++.++++|
T Consensus       706 ~g~~lD~F~V~~~~g~~~~~~~~~~~-----i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t  780 (850)
T TIGR01693       706 DGVALDTFVVQDLFGSPPAAERVFQE-----LLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKAT  780 (850)
T ss_pred             CCEEEEEEEEECCCCCCCCcHHHHHH-----HHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeE
Confidence            47899999999999998765554555     55555555544321    01100   011223 6789999999999999


Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      +|+|.+.|||||+++|+++|.++|+||+.|+|.|.++...|+|+|++. .|.++.+ ++++.|++.|.++|
T Consensus       781 ~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       781 IMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999888999999996 8888876 78888998887755

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.6e-13  Score=139.24  Aligned_cols=149  Identities=16%  Similarity=0.220  Sum_probs=107.7

Q ss_pred             CCcceeecccccCCCCCCCccceeeeeeecCCCcccccccc-cccccchhhhhccccccCCCCC----CCCCCCCCCC-C
Q 022480           15 SSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICL-SRKNRNILFASVNGTNAVSPTP----LKSDQDADYI-P   88 (296)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~   88 (296)
                      +.-+.|+..+++-+  ..=+++|+|-|.|.+|.+++  +.+ ..     +...+..++..+...    .+......++ .
T Consensus       707 ~~g~~i~dAqi~tt--~dG~alDtfiv~~~~g~~~~--~dr~~~-----~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i  777 (867)
T COG2844         707 RRGLSIVDAQIFTT--RDGYALDTFIVLEPDGFPVE--EDRRAA-----LRGELIEALLSGKAQPPRRRRIPRKLRHFPI  777 (867)
T ss_pred             cCCCceeeeEEEEc--cCCceeeeEEEecCCCCccc--hhHHHH-----HHHHHHHHHhcCCCCCccccccCcccceecc
Confidence            34444544443321  23579999999999999999  333 33     344444444444432    1111111335 6


Q ss_pred             CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHH
Q 022480           89 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL  168 (296)
Q Consensus        89 ~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~  168 (296)
                      +|.|.|.++.+..+++++|.+.||||||+.++++|+++|++|+.|+|.|.|+.+.|+|+|++. .|.++.+ +..+.+.+
T Consensus       778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~  855 (867)
T COG2844         778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQ  855 (867)
T ss_pred             CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCCH-HHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999999997 8888854 43344444


Q ss_pred             HHHHhh
Q 022480          169 TIINNL  174 (296)
Q Consensus       169 ~L~~~L  174 (296)
                      .|.+++
T Consensus       856 ~ll~al  861 (867)
T COG2844         856 RLLEAL  861 (867)
T ss_pred             HHHHHh
Confidence            444434

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.45  E-value=3.1e-13  Score=116.11  Aligned_cols=158  Identities=16%  Similarity=0.201  Sum_probs=111.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  179 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~  179 (296)
                      +.+++|+++|.||||+...++++..++||||.++++...|+.+.-+..|    .|.|    +...+|+..|.. +.. +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li----sgs~----dav~~le~~l~~-l~~-~~   72 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI----SGSW----DAVTLLEATLPL-LGA-EL   72 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE----eeCH----HHHHHHHHHhhc-ccc-cC
Confidence            4568999999999999999999999999999999999999988743433    4654    777888888765 433 12


Q ss_pred             CchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Cee
Q 022480          180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA  257 (296)
Q Consensus       180 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra  257 (296)
                      ++.  +.+        .+-      ..++  .......+.++|.+.|||||+.+|++.|.++|++|+++...|+.  +.-
T Consensus        73 ~L~--v~m--------~rt------~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~  134 (176)
T COG2716          73 DLL--VVM--------KRT------GAHP--TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS  134 (176)
T ss_pred             CeE--EEE--------eec------CCCc--cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence            211  110        000      0000  12223579999999999999999999999999999999999975  446


Q ss_pred             eeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          258 KDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       258 ~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ...|++.= -+-|.+- ....|++++.+.+
T Consensus       135 ~~lfha~it~~lPa~~-~i~~l~~~f~al~  163 (176)
T COG2716         135 APLFHAQITARLPANL-SISALRDAFEALC  163 (176)
T ss_pred             ccceehhhhccCCCcC-cHHHHHHHHHHHH
Confidence            67899863 3333332 1234444444433

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.44  E-value=8.6e-13  Score=138.39  Aligned_cols=127  Identities=19%  Similarity=0.173  Sum_probs=97.4

Q ss_pred             CCccceeeeeeecCCCcccccccccccccchhhhhccccccCCCC---C--CCCC----CCCCCC-CCcEEEEeecCCCC
Q 022480           32 APFSHDSFHLINFSRRFYEQGICLSRKNRNILFASVNGTNAVSPT---P--LKSD----QDADYI-PMPHVLIDQDSNSD  101 (296)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~----~~~~~~-~~p~V~i~~~~~~~  101 (296)
                      .-+++|+|.|.+.+|.+..    +.+     +..+++++..++..   .  ....    .....+ .+|.|.++++.+.+
T Consensus       636 dg~~ld~F~V~~~~~~~~~----~~~-----l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  706 (774)
T PRK03381        636 DGVAVLEFVVSPRFGSPPD----AAL-----LRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPD  706 (774)
T ss_pred             CCEEEEEEEEECCCCCcch----HHH-----HHHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCC
Confidence            3789999999999887654    234     55555555554311   0  0000    011223 56788999999999


Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI  170 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L  170 (296)
                      +++|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.+++++  ++.|++.|
T Consensus       707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVEQAV  772 (774)
T ss_pred             eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHHHHh
Confidence            99999999999999999999999999999999999998888999999996 89888653  56666655

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.40  E-value=6e-12  Score=130.02  Aligned_cols=177  Identities=11%  Similarity=0.092  Sum_probs=125.4

Q ss_pred             chhhhhccccccCCCCCCCCCCCCCCCCCcEEEEeecCCCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480           61 NILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~~-~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ..|+...++..+++.. +.+..    ..+..+...   .++ -.++|.. +|++|+|.+++++|+.+|++|++|++.+ +
T Consensus       514 ~~L~~~a~~~L~~~~~-~~p~~----~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~  583 (693)
T PRK00227        514 RIVCSRARARLTDIRP-VAPMF----AARSDIGLV---EED-GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-N  583 (693)
T ss_pred             HHHHHHHHHHhcCCCC-CCCCC----CCccccccc---ccC-CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-C
Confidence            3477777778877775 22211    111111111   112 4777777 9999999999999999999999999999 6


Q ss_pred             CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEE
Q 022480          140 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSL  219 (296)
Q Consensus       140 ~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~Tv  219 (296)
                      +..+..|.|.+. .|.++++    ..+++.++..+.+. .+.   ++                ..++++.+.+     ++
T Consensus       584 ~~~~~~~~v~~~-~~~~~~~----~~~~~~~~~~~~~~-~~~---~~----------------~~~~~~~~~~-----~~  633 (693)
T PRK00227        584 GPWSAEFDVRAN-GPQDFDP----QEFLQAYKSGVYSE-LPD---PA----------------PGITATFWHG-----NI  633 (693)
T ss_pred             CceEEEEEEecC-CCCCCCh----HHHHHHHHHhhcCC-CCc---cc----------------CCCCceEeeC-----cE
Confidence            666889999985 7876533    56777777766542 110   00                1233333332     89


Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      +||++.||||+|++|+++|.    +|.+|+++|.|..++|.||+.. |     ..+..+...+..+|.
T Consensus       634 ~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-~-----~~r~~~~~~~~~~~~  691 (693)
T PRK00227        634 LEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-G-----FDRATVERDVTRVLA  691 (693)
T ss_pred             EEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-c-----ccHHHHHHHHHHHHh
Confidence            99999999999999999999    8999999999999999999962 1     124566666666554

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.36  E-value=6.1e-12  Score=93.48  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCC
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR  155 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~  155 (296)
                      .+|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~   54 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG   54 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc
Confidence            5899999999999999999999999999999999998877 699999996 664

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.33  E-value=1.5e-11  Score=91.96  Aligned_cols=67  Identities=30%  Similarity=0.550  Sum_probs=59.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  171 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~  171 (296)
                      +.|+|+++||||+|++++++|+++|+||++|++++.++..+|+|+|.+. +|.++ +++++++|++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999997766899999996 77776 6678888877764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.32  E-value=1.7e-11  Score=89.93  Aligned_cols=69  Identities=32%  Similarity=0.528  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      |+|+|.+.||||+|++|+++|+++|++|.++++.|.++.+.|.|++++ +|.++..+..++|+++|..+|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999999889999999997 777765557788999987764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.29  E-value=3.4e-11  Score=90.10  Aligned_cols=65  Identities=26%  Similarity=0.410  Sum_probs=56.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL  282 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L  282 (296)
                      +.|+|.++||||+|++|+.+|+++|+||.++++.|.++.+.|+|+|.+ +|.++..+.+++|+++|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence            689999999999999999999999999999999999889999999997 88887444555555554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.26  E-value=6.3e-11  Score=86.95  Aligned_cols=69  Identities=29%  Similarity=0.494  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      |.|.|+++|++|+|++++++|+++|+||.++++.+.++...|+|++.+. +|.+ .+.+++++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999998877899999996 7777 4568999999998764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.05  E-value=2.6e-09  Score=77.73  Aligned_cols=69  Identities=32%  Similarity=0.498  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      +.|.|.+.|+||+|++|+++|+++|++|.++++.+.++...+.|++.. +|.+..++.++.|+++|+.++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            468899999999999999999999999999999998789999999986 666655557788888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.98  E-value=6.7e-09  Score=75.53  Aligned_cols=68  Identities=29%  Similarity=0.520  Sum_probs=59.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      .|.|.++|+||+|++++++|+.+|++|.++++.+.++...+.|++..+ ++.. .+++++++|++.|..+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            688999999999999999999999999999999998866799999985 6555 4558999999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.97  E-value=5.8e-09  Score=77.56  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ..|.|.++|||||+++|+.+|+.+|+||..|+|.| ..+.+.|+|+|.+ +|+-     -..|.++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            46889999999999999999999999999999975 5688999999997 5543     245666666655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.73  E-value=1.5e-07  Score=71.05  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      +.+|++.|+||||+++.++++|+++||||.+.++.+.++.+.-.+.|.-+        ++..++|+..|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999877777652        36778888888874

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.63  E-value=4.5e-07  Score=64.98  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVSYGGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r--a~D~F~V~~~g~~L~~~~~~~L~~~L~~~  285 (296)
                      |+|.|.++||||+|++|+++|+++|+||.++...+.+..  ...++...+      ....+++.++|+++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD------EEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE------GHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC------CCCHHHHHHHHHcc
Confidence            678999999999999999999999999999999988764  333333322      11345666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.52  E-value=9.8e-07  Score=66.52  Aligned_cols=66  Identities=17%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      +.+|.+.|+||||++++|+++|+++|+||...+..+.|++..-.+.++-.     +...++|+++|.....
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888643     3356778888776543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.50  E-value=1.9e-06  Score=61.75  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~--~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  +....+.+.+.         ...+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence            57899999999999999999999999999999999988  33433433331         344556666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.50  E-value=1e-06  Score=66.59  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ++|++.|+||||++++++++|+++|+||.+.+.+..++.|.-...+..+    +    ...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH
Confidence            6899999999999999999999999999999999998888544444431    1    234666666665

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.43  E-value=9e-07  Score=66.39  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      +++|.++||||++++|+++|+++|+||...+-.+.+++-.-.|.+.- .+..     .+.|+++|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~-----~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSAD-----SEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCC-----HHHHHHHHHHHH
Confidence            47899999999999999999999999999999888877555666642 2322     345555555444

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.40  E-value=1.6e-06  Score=65.01  Aligned_cols=63  Identities=10%  Similarity=0.037  Sum_probs=50.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      +|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+      ...+.+++.|...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l   63 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFK   63 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHH
Confidence            478999999999999999999999999999999998887766777653 22      1246677777663

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.19  E-value=5.6e-06  Score=60.15  Aligned_cols=67  Identities=13%  Similarity=0.318  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ++|+|.+||+.||-.++|+++.+.|++|..+.+.|.|.+..-+|+|... . ..+  +-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999988778999874 2 222  36899999988764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.17  E-value=0.00014  Score=59.54  Aligned_cols=112  Identities=19%  Similarity=0.322  Sum_probs=79.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCch
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS  182 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~~  182 (296)
                      -++.|+..|+||-|+.++..|.++|+||..-.|..+++.-+-..+|..         |+   .-.+.|+++         
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d---~A~~~Lee~---------   62 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PD---EAHSVLEEA---------   62 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hH---HHHHHHHHC---------
Confidence            368899999999999999999999999999999888883332333322         11   112223220         


Q ss_pred             hHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEE
Q 022480          183 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKF  261 (296)
Q Consensus       183 ~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F  261 (296)
                                        .|.    |.      ...++-|+..|+||=|.+|..+|.++|+|+.++..-+. ...+.=.|
T Consensus        63 ------------------gF~----Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~  114 (142)
T COG4747          63 ------------------GFT----VR------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV  114 (142)
T ss_pred             ------------------CcE----EE------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence                              011    11      12578889999999999999999999999999988654 44455444


Q ss_pred             EE
Q 022480          262 HV  263 (296)
Q Consensus       262 ~V  263 (296)
                      .+
T Consensus       115 r~  116 (142)
T COG4747         115 RV  116 (142)
T ss_pred             Eh
Confidence            44

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.15  E-value=2.1e-05  Score=59.45  Aligned_cols=39  Identities=18%  Similarity=0.389  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  256 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r  256 (296)
                      .+|.+.|+|||||+++|+++|+++|+||...+-.+.+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~   40 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE   40 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE
Confidence            688999999999999999999999999999999886554

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.08  E-value=1.4e-05  Score=61.68  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      .++++.|+||||++++|+++|+++|+||...+-.+.+++..=.+.+.-.+...+   .+.|++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~---~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLD---FAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence            578999999999999999999999999999999887654333333322210121   345555555544

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.08  E-value=1.4e-05  Score=61.59  Aligned_cols=64  Identities=8%  Similarity=0.096  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+ .   .  ....+.|++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~---~--~~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E---S--NLDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C---C--CCCHHHHHHHHHH
Confidence            4789999999999999999999999999999999987766555555542 1   0  0124666766665

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.04  E-value=9.5e-06  Score=60.44  Aligned_cols=63  Identities=14%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe--CCCC--CChHHHHHHHHHHHHHc
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY--GGAA--LNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~--~g~~--L~~~~~~~L~~~L~~~l  286 (296)
                      +|++.|+||||++++|+++|+++|+||...+..+..  ....|+++=  +..+  .+   .++|+++|....
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~---~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLS---REALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence            478999999999999999999999999999998732  223577752  2221  22   355565555543

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.04  E-value=3.3e-05  Score=58.07  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=47.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEE-e-CCCCCChHHHHHHHHHHHHHc
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS-Y-GGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r--a~D~F~V~-~-~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      +|.+.|+||||++++|+++|+++|+||...+..|.+..  ....|.++ . +..+-  ....+|++.|....
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999988732  44566665 2 33221  12455666665544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.03  E-value=4.1e-05  Score=57.53  Aligned_cols=62  Identities=15%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC------CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~------~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +|+|.|+|+||++++++++|+++|+||.+.+..+.+      +.+.-.+.+.-+ .+      ...+++++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHH
Confidence            378999999999999999999999999999999987      334334444432 11      124667777766

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.99  E-value=2e-05  Score=58.64  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +|+|.|+||||++++++++|+++|+||.+.+.++.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            47899999999999999999999999999999874

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.99  E-value=4.6e-05  Score=58.78  Aligned_cols=41  Identities=12%  Similarity=0.290  Sum_probs=37.2

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCee
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA  257 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra  257 (296)
                      .+++++.|+||||++++|+++|+++|+||....-.+.+++.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~   43 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF   43 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence            57999999999999999999999999999999988876543

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.97  E-value=3.2e-05  Score=58.27  Aligned_cols=63  Identities=29%  Similarity=0.386  Sum_probs=47.1

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .+.|.|.+.||||+|++|+++|++.|+||..+.+.+.  ++.+.-.|.+.=.+    .++++.|.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHH
Confidence            5789999999999999999999999999999999985  56677777774221    225566666654

>PRK00194 hypothetical protein; Validated

Probab=97.96  E-value=3.5e-05  Score=59.44  Aligned_cols=65  Identities=9%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .++|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+  +.+    ...+.|++.|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESK----KDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCC----CCHHHHHHHHHH
Confidence            57899999999999999999999999999999999877766544444432  111    113556666655

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.71  E-value=0.00028  Score=51.95  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=45.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      |.|.+.||||+|++|++++++.|+||......+. .+.+.-.|.+.-.+    .++++.+.++|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~----~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS----EEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence            6889999999999999999999999999998765 35565556664222    1245666666554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.65  E-value=0.00011  Score=65.19  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=45.1

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .+.+|++.|+|||||++.|+++|+++|+||...+....|+.-.-++.++
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs   55 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS   55 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence            4789999999999999999999999999999999999999777777774

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.59  E-value=0.00044  Score=52.03  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=43.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-Ce-EEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SV-KQTKFFITRLDTGRKVEDPDLLERIRLTII  171 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~  171 (296)
                      +.+.|.+.||+|+|++|+.++++.|+||.+..+.+.. ++ +.-.|.+.-.       +.+.++.|-..|+
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999974 43 3444555432       3355555555544

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.56  E-value=0.00047  Score=64.81  Aligned_cols=67  Identities=19%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--eCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T--~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ...+|+|.|+||||+++.++++|+++|+||.+.+..+  .++.|.-.+.+.-  +..    +..++.|+..|...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999  6665543344432  111    12357777777763

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0005  Score=64.67  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEEE-e-CC--CCCChHHHHHHHHHHHHHc
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS-Y-GG--AALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V~-~-~g--~~L~~~~~~~L~~~L~~~l  286 (296)
                      .++|+|.|+|||||+++|+++|+++|+||...+..+  .++    .|.+. . +.  .+.+   .+.|+++|....
T Consensus         6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~~~~---~~~L~~~L~~l~   74 (286)
T PRK06027          6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGLIFN---LETLRADFAALA   74 (286)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCCCCC---HHHHHHHHHHHH
Confidence            689999999999999999999999999999999998  554    46665 2 32  2332   345555555443

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.50  E-value=0.0013  Score=48.24  Aligned_cols=61  Identities=16%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +.|.+.||||+|++++.++++.|.||.+....+..++. ...|.+.-.       +.+.++.+...|+.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            67899999999999999999999999998887765444 344555432       33666666666654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.49  E-value=0.00068  Score=50.43  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=32.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      .|+|.+.||+|+|++|+++|++.|+||.+.++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.48  E-value=0.00015  Score=56.48  Aligned_cols=35  Identities=17%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      ..+|+|.+.||||+.+.|+++|+++|+||....=+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt   37 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT   37 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence            57999999999999999999999999999886543

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.47  E-value=0.00039  Score=65.50  Aligned_cols=42  Identities=14%  Similarity=0.085  Sum_probs=36.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EeCCeE
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVK  142 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~--T~~~~~  142 (296)
                      ...+|+|.|+||||+.+.++++|+++|+||.+.+.+  +..+.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~f   51 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRF   51 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcE
Confidence            346899999999999999999999999999999997  334444

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.44  E-value=0.00035  Score=65.73  Aligned_cols=46  Identities=9%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .++++|.|+||||++++|+++|+++|+||......|..  ..+.|.++
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~   52 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR   52 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence            57899999999999999999999999999999887543  55567665

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.44  E-value=0.0014  Score=47.61  Aligned_cols=46  Identities=13%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      ..+.|...|+||.|++|+.+|.++|+||.+..+...++.  ..+.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            467889999999999999999999999999998766553  5666643

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.43  E-value=0.002  Score=48.53  Aligned_cols=66  Identities=12%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~-ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      +.+.+...|+||.|++|.+.|+++|+||.+......+. ...=.|+|.-+|. ..++..+++.+.|+.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence            45777889999999999999999999999998766543 3445677865665 333444455555554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.36  E-value=0.0013  Score=47.06  Aligned_cols=34  Identities=29%  Similarity=0.575  Sum_probs=30.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      +.|..+|+||+|++|+++|+++|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            4678899999999999999999999998877543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.35  E-value=0.0013  Score=61.65  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=46.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +|+|.|+||||+.+.++++|+++|+||.+.+.+...  +.|.-.+.+.-+  +..+    ..+.|++.|..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence            689999999999999999999999999999999864  555544545432  2111    23566666665

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.33  E-value=0.0013  Score=47.91  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .|.|.+.|+||+|.+|+++|+++|++|......+.+  +.+.=.|.+ .   ..+..+.+++.+.|+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHHc
Confidence            578999999999999999999999999999876543  333222222 2   1123355666666653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.32  E-value=0.0021  Score=46.69  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~-ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      +.+.|..+|+||.|++|++.|+++|++|.+....... + ...-.|.++..      ...+++.+.|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ------EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH------HHHHHHHHHHHH
Confidence            4678899999999999999999999999998876652 2 33335555321      134456565554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.29  E-value=0.00092  Score=46.75  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=38.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEe
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY  265 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~  265 (296)
                      +++...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999987655 66776676643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.28  E-value=0.001  Score=48.45  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ++|+|.++|+.||=.||++++.++|++|..+.++|.|.=..=+|-|......+.- .-..|+++|..++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~C   68 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSAC   68 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999988888888653322211 3456777776654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.25  E-value=0.0015  Score=61.40  Aligned_cols=44  Identities=23%  Similarity=0.436  Sum_probs=37.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      +|+|.|+|||||++.|+++|+++|+||....-.+.  .-.+.|+++
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr   45 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR   45 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence            68999999999999999999999999999887765  233466665

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.23  E-value=0.0019  Score=60.84  Aligned_cols=65  Identities=11%  Similarity=0.023  Sum_probs=46.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+|+|.|+||||+++.++++|+++|+||.+.+..+..  +.|.-.+.+..+ .+.      ..+.|++.|...
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~~------~~~~L~~~L~~l   73 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EGL------DEDALRAGFAPI   73 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CCC------CHHHHHHHHHHH
Confidence            46899999999999999999999999999999997443  233333444332 221      246667776663

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.22  E-value=0.0032  Score=46.30  Aligned_cols=63  Identities=21%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .+.|.+.||||+|++|+++|+++|++|......+.. +.+.=.|.+...+.   +.++++|.++|+.
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHhc
Confidence            478999999999999999999999999999876543 44445566643221   1145666666653

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.21  E-value=0.0026  Score=45.16  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=37.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  263 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V  263 (296)
                      +.+.+.|+||+|++|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999997754  445555555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.21  E-value=0.0038  Score=44.53  Aligned_cols=61  Identities=20%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .+.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.=.|.+ + ..  + +..+.+.+.|+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~--~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-GD--D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-CC--H-HHHHHHHHHHhC
Confidence            46788999999999999999999999999998775 3 333333333 2 21  2 345566666654

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.19  E-value=0.00049  Score=53.71  Aligned_cols=49  Identities=10%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      ..+|+|.|.||||+.+.++++|+++|+||++-...-..+.+--.+.|.-
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~   51 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI   51 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence            4689999999999999999999999999999887777777654454543

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.17  E-value=0.0045  Score=44.25  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +.|..+|+||+|++++.+|+++|+||.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998877654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.14  E-value=0.0027  Score=55.65  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      ..+.|.+.|+||+|++|+.+|+++|+||.+..+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            47899999999999999999999999999999965

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.13  E-value=0.0025  Score=45.26  Aligned_cols=49  Identities=24%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  267 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g  267 (296)
                      ++.|..+||||-|++|+.+|+++|+||.+......+......++++-++
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            4678899999999999999999999999888755442223334444333

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.12  E-value=0.0024  Score=60.25  Aligned_cols=46  Identities=11%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .++|+|.|+|||||++.|+++|+++|+||....-.+  +...+.|+.+
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm~   54 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFMR   54 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEEE
Confidence            579999999999999999999999999999988763  2334445544

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.11  E-value=0.0035  Score=54.05  Aligned_cols=67  Identities=12%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      .++.|...|+||.|++|+..|+++|+||.+.-+...++...-.+.++=+|   ++...++|.+.|.+.+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCcc
Confidence            46889999999999999999999999999998865543333333333234   23456777777776543

acetohydroxyacid synthase is a synonym.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.09  E-value=0.004  Score=47.33  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ..+.+...|+||.|++|+..|+..|+||.+..+. |+.....-+-.+.. |   ++...++|.+.|.+.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCCc
Confidence            4688999999999999999999999999999986 44333333323322 2   1224567777766544

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.03  E-value=0.0039  Score=48.24  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-. .|    +++.+++|.+.|..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999998876633323333321 13    34677777777765

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.00  E-value=0.0056  Score=48.49  Aligned_cols=66  Identities=9%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ...+|.+...|+||+|++|+-.|++.|+||++..+.-.+.. ..-+..+.. +    +...+++.+.|.+..
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence            45779999999999999999999999999999998644433 333332322 2    235567777766554

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.00  E-value=0.0053  Score=46.64  Aligned_cols=64  Identities=8%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.++-  .|    +++.+++|.++|..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~--~~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA--VC----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence            468999999999999999999999999999888755543222233332  12    23666777777665

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.99  E-value=0.0054  Score=48.61  Aligned_cols=66  Identities=12%  Similarity=0.147  Sum_probs=49.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .+...+.++..|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-.  +     ++.+++|.+.|..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhC
Confidence            3446799999999999999999999999999999988776643333333331  1     2566777777665

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.97  E-value=0.0067  Score=43.18  Aligned_cols=33  Identities=18%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.94  E-value=0.0047  Score=44.86  Aligned_cols=44  Identities=20%  Similarity=0.434  Sum_probs=34.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV  263 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V  263 (296)
                      +-+...|+||.+++|++.|+++|+||.+.....  .++.+.=+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            456899999999999999999999999988754  34455444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.92  E-value=0.0055  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      .+.|.+.||+|++++|+.++++.|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.92  E-value=0.013  Score=45.82  Aligned_cols=70  Identities=11%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      ..+.|-+...|+||-|+++.+.|+++|||+.+.+-...... -.=.|||.-+|+ . ++..+++.+.|+..|.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhC
Confidence            35777778899999999999999999999999998765444 444788865776 2 4444555566666655

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.91  E-value=0.0068  Score=52.48  Aligned_cols=67  Identities=12%  Similarity=0.257  Sum_probs=46.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      .++.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-+|   ++...+++...|.+.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcccc
Confidence            47889999999999999999999999999998764432222223332233   23355677777665543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0026  Score=58.97  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=35.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ...++++.|+|++|+.+.|++.|+++||||.++..++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~   44 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP   44 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence            457999999999999999999999999999999999653

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.86  E-value=0.01  Score=43.07  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=42.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      -+.|.+.|++|++++++.+|.++|+||.........+ +......++..      .+...++.+.+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence            4678899999999999999999999999988765533 33332333321      123455555555543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.84  E-value=0.01  Score=42.92  Aligned_cols=39  Identities=10%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV  141 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~  141 (296)
                      ..+.|..+|+||.|++++.+|.++|+||....++..++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            367889999999999999999999999999998887663

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.78  E-value=0.0086  Score=46.34  Aligned_cols=66  Identities=11%  Similarity=0.232  Sum_probs=46.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeC-CCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYG-GAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~-g~~L~~~~~~~L~~~L~~~l  286 (296)
                      .++.+...|+||.|++|+..|.+.|+||.+..+........-.+-+.-+ |.   +...+++.+.|.+.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCCc
Confidence            3688889999999999999999999999999996433333333333222 32   224567777776554

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.78  E-value=0.018  Score=40.97  Aligned_cols=40  Identities=13%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe-CCeEE
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQ  143 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~-~~~~~  143 (296)
                      .+.+.+.|++|++.+++.+|+++|+||......+. +++..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~   42 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGIS   42 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeE
Confidence            46788999999999999999999999999998776 44443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.77  E-value=0.014  Score=42.82  Aligned_cols=62  Identities=13%  Similarity=0.095  Sum_probs=44.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChH-HHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPD-LLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~-~l~~L~~~L~~  172 (296)
                      .+.|.+.|+||++++++++|+++|.||......+..++ +.-.|.+...  +     .+ .+++|-+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~--~-----~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS--T-----MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC--c-----hHHHHHHHHHHHhc
Confidence            57899999999999999999999999999877554433 3333555432  1     23 56666666654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.77  E-value=0.0061  Score=42.51  Aligned_cols=45  Identities=9%  Similarity=0.269  Sum_probs=36.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT  149 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~d~F~V~  149 (296)
                      +.|..+|+||.+++++++|.++|+||....++..+ +..+-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            35788999999999999999999999999988876 3334445443

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.74  E-value=0.014  Score=41.70  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      .+.+.+.|+||.|++|++.|.++|++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47789999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.74  E-value=0.014  Score=50.24  Aligned_cols=63  Identities=17%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.|...|+||.|++++++|++.|+||.+-.+.... ++.. -+|.+.    |    ++..++.|.++|...
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKL   66 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcC
Confidence            3688999999999999999999999999999988876 3443 334342    2    236677888877763

acetohydroxyacid synthase is a synonym.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.74  E-value=0.016  Score=41.99  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ..+.|..+|+||.|+++++.|+++|+||.........
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~   38 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR   38 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence            4688899999999999999999999999988877763

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.72  E-value=0.012  Score=44.66  Aligned_cols=63  Identities=16%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-c-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-E-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T-~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ..+.+...|+||.|.+|+..|+..|+||.+..+.- . ++...=.+.+ .+     +...++|.+.|.+.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~-----~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-AS-----ERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CC-----CchHHHHHHHHhcCc
Confidence            57899999999999999999999999999999964 3 3333334444 22     224566777666544

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.71  E-value=0.016  Score=50.17  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.|...|+||.|++++++|+.+|+||.+-.+.... ++.. -+|.+.    |    +++.+++|.++|...
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~----~~~~i~qi~kQl~KL   67 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----G----DEQVIEQITKQLNKL   67 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcc
Confidence            4688999999999999999999999999999887775 3443 233332    2    236778888887764

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.70  E-value=0.0021  Score=46.33  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  263 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V  263 (296)
                      +-+.+.||||+|.+|+.+|++.|+||.+....+.++.+.=.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999988766555444444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.69  E-value=0.011  Score=38.59  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=31.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  254 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G  254 (296)
                      |.+.+.|+||++++|.++|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK08577 hypothetical protein; Provisional

Probab=96.69  E-value=0.02  Score=47.82  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=40.1

Q ss_pred             CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022480          215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  263 (296)
Q Consensus       215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V  263 (296)
                      ...+.|.|.+.|+||+|++|+++|+++|++|.+....+..  +.+.-.|.+
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v  104 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV  104 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence            3489999999999999999999999999999999887653  334444444

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.64  E-value=0.0083  Score=55.64  Aligned_cols=56  Identities=16%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe----CCCCCChH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS  273 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~----~g~~L~~~  273 (296)
                      +.++|.+.|+|+|||++.|+..|+++|+||....=-  ++.....|+.+-    ++.++..+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~   65 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDRE   65 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHH
Confidence            468999999999999999999999999999887655  445566788873    45555543

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.62  E-value=0.025  Score=41.85  Aligned_cols=64  Identities=16%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480          221 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       221 eV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~  285 (296)
                      -+...|+||-|++|.+.|+++|+||.+.+..... ....=.|||.-+|.. .+...+++.+.|+..
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~~   67 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKRV   67 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHHh
Confidence            4556899999999999999999999999776443 356667888756642 223344555665543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.60  E-value=0.017  Score=42.01  Aligned_cols=34  Identities=32%  Similarity=0.496  Sum_probs=31.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      +.+.+..+|+||.|.+|+++|+++|+||.+....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            5688899999999999999999999999988754

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.58  E-value=0.013  Score=51.28  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      ..+.|.+.|+||+|++++++|+..|+||.+-.+....+.-.-.+.+.-+  +.    +..++.|+++|....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999996644322212333331  21    233677777777644

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.51  E-value=0.017  Score=42.39  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +.|..+|+||-|++++.+|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998877665

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.50  E-value=0.019  Score=39.46  Aligned_cols=35  Identities=34%  Similarity=0.664  Sum_probs=32.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  254 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G  254 (296)
                      |.|.+.|+||++.+|++.|.+++++|....+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            46789999999999999999999999999998765

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.48  E-value=0.026  Score=40.23  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  142 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~  142 (296)
                      .+.+.++|++|.+++++..|+++|+||.+.......++.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~   40 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGK   40 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCe
Confidence            578899999999999999999999999988887654333

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.48  E-value=0.02  Score=43.44  Aligned_cols=61  Identities=7%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE--EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ--TKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~--d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-.  -++.+.   +.      ..++.|.++|..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SE------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CC------chHHHHHHHHhc
Confidence            47899999999999999999999999999999988655322  233331   22      455677777665

>PRK08577 hypothetical protein; Provisional

Probab=96.40  E-value=0.071  Score=44.42  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=40.7

Q ss_pred             EEEEeecC--CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480           91 HVLIDQDS--NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus        91 ~V~i~~~~--~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      .+.+.+-.  ....+.+.|.+.|++|+|++++++|+++|+||.+....+..
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            45554443  34578999999999999999999999999999998887765

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.34  E-value=0.02  Score=42.09  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      +.+..+|+||-|+++++.|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5788999999999999999999999998876544

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.30  E-value=0.043  Score=37.64  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  142 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~  142 (296)
                      +.|.+.|++|.+..++..|.+++++|....+...++..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~   38 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGL   38 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCE
Confidence            46789999999999999999999999999987766333

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.30  E-value=0.031  Score=41.67  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      |-+...|+||-|++|.+.|+.+|||+.+.+-...... .+=.|||.-+|   .++..+++.+.|+.
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~~   65 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLRR   65 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHHH
Confidence            4455689999999999999999999999988655443 45578886566   23333444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.24  E-value=0.021  Score=41.59  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          226 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       226 DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      |+||.|.+|+..|...|+||++..+........-.+.+.-.|..   ...++|...|.+.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~---~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD---REIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C---CHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc---hhHHHHHHHHhccC
Confidence            78999999999999999999999998733222222333323321   13456666666543

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.23  E-value=0.02  Score=40.47  Aligned_cols=44  Identities=14%  Similarity=0.119  Sum_probs=36.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeE-EEEEEE
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFI  148 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~-~d~F~V  148 (296)
                      +.|.+.|++|++++++.+|+++|+||.+..+...+ ++. .-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999998865 333 344555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK07334 threonine dehydratase; Provisional

Probab=96.20  E-value=0.024  Score=55.65  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-----G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .+.|+|.+.||||+|.+|+++|++.++||.+....+.     ++.+.=.|.|.=.+    .+++++|.++|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            4899999999999999999999999999999998764     34444444442121    2356777777765

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.15  E-value=0.055  Score=38.32  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +.+.+.|++|.+++++..|+++|+||........
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~   35 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK   35 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence            5788999999999999999999999999888763

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.10  E-value=0.09  Score=39.44  Aligned_cols=48  Identities=21%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEee
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITR  150 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~  150 (296)
                      +.+.+..+|+||.|+++.++|+++|+||.+-......+ ...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            35667789999999999999999999999987776654 2334577765

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.00  E-value=0.082  Score=34.25  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      |.+.++|++|.+.+++++|..+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987764

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=95.98  E-value=0.088  Score=44.74  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHH
Q 022480           89 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIR  167 (296)
Q Consensus        89 ~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~  167 (296)
                      .-..-+.....+....+.+.+.|+||+|++|+.+|+++|+||..-......++.. -.|.+...  +.    ...++.|.
T Consensus        56 d~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~~----~~~L~~Li  129 (147)
T PRK04435         56 DYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--SM----EGDIDELL  129 (147)
T ss_pred             CeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--Ch----HHHHHHHH
Confidence            3444555556677789999999999999999999999999999988766555543 34555442  11    12555555


Q ss_pred             HHHHH
Q 022480          168 LTIIN  172 (296)
Q Consensus       168 ~~L~~  172 (296)
                      ..|..
T Consensus       130 ~~L~~  134 (147)
T PRK04435        130 EKLRN  134 (147)
T ss_pred             HHHHc
Confidence            55554

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.90  E-value=0.045  Score=39.59  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +.+..+|+||.+++++++|+++|+||.+......
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~   35 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRD   35 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeecc
Confidence            4678999999999999999999999998887665

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=95.74  E-value=0.076  Score=45.13  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=47.4

Q ss_pred             CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .....|.+...|+||+|++|.++|+++|+||......+. ++.+.=.|-+...+.   ..+.++|.++|+
T Consensus        67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~  133 (147)
T PRK04435         67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR  133 (147)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence            347999999999999999999999999999998876543 344555566643211   113456666655

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=95.64  E-value=0.048  Score=57.26  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             cEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022480          217 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL  286 (296)
Q Consensus       217 ~TvleV~t-~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~-~~~~L~~~L~~~l  286 (296)
                      ...++|.. +|++|+|.+++.+|+.++.+|++|++.+ ++.+...|.|+. .|.+..+. .+|.++..+.-.+
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  617 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSEL  617 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCC
Confidence            36777888 9999999999999999999999999999 888889999997 67776655 5566666655443

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.60  E-value=0.08  Score=38.58  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=41.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +.|..+||||-|.+++.+|.. |.||.+-+-...+.+...+++..+-      .+++.++.|.+.|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            357789999999999999999 9999987665444333344444331      124566667766654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.60  E-value=0.036  Score=39.13  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      +.|..+|+||-|++++++|.++|+||.+...+...
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67888999999999999999999999988776654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.52  E-value=0.089  Score=39.54  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=44.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      |-+...|+||-|+++.+.|+.+|+|+.+.+....... .+=.|||.-+|+.  + ..+++.+.|+.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~--~-~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ--R-RLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH--H-HHHHHHHHHHH
Confidence            4455689999999999999999999999998765443 4557888656764  2 23344454444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.46  E-value=0.11  Score=51.07  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe----CCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~----~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..|.|.+.||+|+|++|+.+|++.++||.+....+.    .++.. -.|.|.-       .+.+.++.|...|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998765    34442 2344432       234667777777665

>PRK06635 aspartate kinase; Reviewed

Probab=95.46  E-value=0.28  Score=47.92  Aligned_cols=108  Identities=15%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             EEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022480          103 TIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  180 (296)
Q Consensus       103 t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~  180 (296)
                      ..|+|. ..+++|.++++..+|.++|+||..-......++.. -.|.|..          +..++..+.|.+ +..    
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~----  327 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKD----  327 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH----
Confidence            344444 57789999999999999999999654443333232 2344432          222333333333 110    


Q ss_pred             chhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480          181 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       181 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                         .+                 .. ..|.+.+   +.+.+.|.+   .|+||.+++|.++|++.|++|....
T Consensus       328 ---~~-----------------~~-~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        328 ---EI-----------------GA-ESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ---Hc-----------------Cc-ceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence               00                 00 1122222   357777765   6999999999999999999998863

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.37  E-value=0.91  Score=44.27  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             CeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          101 DATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       101 ~~t~V~V~---~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      +...|+|.   ..+++|.++++..+|.++|+||..-.... .+ .--.|.|..          +..+++.+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDE----------TDADEAVRALKDQSGA-  325 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence            44567777   57889999999999999999997443321 12 111244432          2223333334332211 


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA  248 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~A  248 (296)
                             .                 . ...+.+++   +.+.|.|.+.   ++||+++++.++|++.|+||...
T Consensus       326 -------~-----------------~-~~~i~~~~---~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       326 -------A-----------------G-LDRVEVEE---GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             -------c-----------------C-CceEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence                   0                 0 00122222   3577777765   89999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.25  E-value=0.11  Score=48.93  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  269 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~  269 (296)
                      -|.|-+...|+||.|++|...|+++|||+.+.+-.-.+.. -.=.|||.-+|+.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence            4777777789999999999999999999999999765544 5557888657764

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.23  E-value=0.069  Score=38.83  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          111 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       111 DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      |+||.|.+++++|...|+||.+-.+....+.-.-.+.++-  .|.    ++.++.|.+.|..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence            7899999999999999999999999885543322233333  232    1455667766665

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.18  E-value=0.035  Score=41.97  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE--EeCCCCCChH-HHHHHHHHHHHHc
Q 022480          220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV--SYGGAALNSS-LSQVLVNCLRYYL  286 (296)
Q Consensus       220 leV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T--~G~ra~D~F~V--~~~g~~L~~~-~~~~L~~~L~~~l  286 (296)
                      +|+.+.-||-.+||||-+|+.+|+-|.+|+|.-  .+++...+|.+  .+.++.++.. .++++.+.+++.+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999963  45666666444  3444445544 6677887777654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.14  E-value=0.11  Score=37.65  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      +.+.+..+|+||.+..++++|.++|+||.+......
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            578899999999999999999999999998876554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.02  E-value=0.1  Score=55.25  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .+.|.|.+.||+|||.+|+++|++.++||..+.+.+..  +.+.-.|.|.=.+    -.++..|.+.|+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            56899999999999999999999999999999998753  5555556553111    114556666655

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=94.97  E-value=0.021  Score=41.07  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=30.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  140 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~  140 (296)
                      +.+.+.|+||++++++.+|+++|+||......+.++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~   37 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGE   37 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCC
Confidence            577899999999999999999999998876655443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK06291 aspartate kinase; Provisional

Probab=94.88  E-value=2.8  Score=42.06  Aligned_cols=110  Identities=12%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      ++...|+|.+.   +.+|+++++.++|.++|+||..-...+....+  .|.|..          +..++..+.|...+.+
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~----------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE----------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence            34567788754   78999999999999999999875433322222  244433          1222233334333321


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI  250 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI  250 (296)
                      . .                         ...|.+.+   +...|.|.+.   +++|++.++..+|.+.|++|....-
T Consensus       387 ~-~-------------------------~~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        387 G-L-------------------------VRDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             h-c-------------------------CcceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence            0 0                         00122222   3577888775   7999999999999999999986553

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=94.65  E-value=0.021  Score=49.74  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=45.8

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      ++-+|...+.|||||+..|+++..++|+|+...|++..|+...-+..|+.
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg   53 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG   53 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence            36899999999999999999999999999999999999999888777753

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.43  E-value=0.17  Score=53.38  Aligned_cols=63  Identities=11%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .+.|.|.+.||+|+|.+|+++|+..++||.++.+.+.. ..+.-.|.|.=.+    -.++..|...|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD----RVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            57899999999999999999999999999999998765 3444455553111    124556666655

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.31  E-value=0.21  Score=44.82  Aligned_cols=55  Identities=15%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSS  273 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~  273 (296)
                      +...|-+.-.||||.+..|+.+|.++||||..+++...  |+.|.=+..+   .++++++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~  203 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDH  203 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHH
Confidence            45677788899999999999999999999999999764  4544444333   3344444

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.22  E-value=0.34  Score=51.37  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC-CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~-~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..|.|.+.||+|+|++|+.+|+..++||.+..+.+.. ++. .-.|.|.-       .+.+.+.+|-..|..
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~  731 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            4788999999999999999999999999999997764 444 33454442       233666666666654

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.20  E-value=0.68  Score=34.00  Aligned_cols=64  Identities=14%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      +.+..+|+||-|+.+..+|+++|+||.+-.-.-..+ ...-.|+|.-  +|. .. +...+.+-+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~~-~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-ID-DPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-CC-CHHHHHHHHHHHH
Confidence            445668999999999999999999999885554433 2233466665  343 11 2444444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.17  E-value=0.25  Score=40.34  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=42.5

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeee-eEEEEEeCCCC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA  269 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~-D~F~V~~~g~~  269 (296)
                      .|.|-+...|+||-|++|.+.|+.+|||+.+.+.-..+..-. =.|||.-+|+.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence            467777779999999999999999999999999877655533 46788646653

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.16  E-value=0.21  Score=52.56  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .+.|.|.+.||+|+|++|+++|+..++||.++.+.+.. +.+.-.|.|.=.+    -.++..|...|+
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~----~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN----YKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            57899999999999999999999999999999998764 4443344442111    114555555554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.15  E-value=0.11  Score=51.24  Aligned_cols=60  Identities=20%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVL  278 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L  278 (296)
                      ....|-+.-.|+||.++.|+.+|+++|+||...+....|+.+.-+|.+  ++ ++.++.+++|
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i  396 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDAL  396 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHH
Confidence            457778899999999999999999999999999999999777766655  44 4444333444

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.05  E-value=0.37  Score=50.87  Aligned_cols=64  Identities=16%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.. -.|.|.-       .+.+.+.+|-..|..
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            347889999999999999999999999999999877765443 3344432       233666666666654

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.86  E-value=0.38  Score=50.55  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             EEEeecC-CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEE-EEEeecCCCCCCCChHHHHHHHHH
Q 022480           92 VLIDQDS-NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLT  169 (296)
Q Consensus        92 V~i~~~~-~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~-F~V~~~~~g~~l~~~~~l~~L~~~  169 (296)
                      |.|..+. ..-.+.|.|.+.||+|+|++|+.+|+..+.||.+....+..+++..+ |.+.       +.+-..+.+|-..
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~  688 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLAR  688 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHH
Confidence            3444443 23446899999999999999999999999999999998875555432 3232       2233566666666


Q ss_pred             HHH
Q 022480          170 IIN  172 (296)
Q Consensus       170 L~~  172 (296)
                      |++
T Consensus       689 l~~  691 (701)
T COG0317         689 LKQ  691 (701)
T ss_pred             Hhc
Confidence            554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.72  E-value=0.33  Score=45.64  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCC
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALN  271 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~  271 (296)
                      ..|.|-+..+|+||-|+++...|+.+|||+.+.+..-.+ ....=+|||.-+|+.-.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~  249 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD  249 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence            378888888999999999999999999999999997555 44566788854676543

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.63  E-value=0.53  Score=49.58  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .+.|.|.+.||+|+|++|+.+|+..++||.+..+.+..++.. -.|.|.-       .+...+.+|-..|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            357889999999999999999999999999999987755443 2344432       233566666665554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.36  E-value=0.46  Score=34.50  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022480          221 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       221 eV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~-~g~~L~~~~~~~L~~~L~~  284 (296)
                      .|.-+||||=|.+++++++. |.||...+-.-.+.....++..-. .+    .++.++|.++|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            57789999999999999999 999998877654422223332222 33    2356677777764

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.08  E-value=0.89  Score=34.63  Aligned_cols=61  Identities=8%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEE-EeecCCCCCCCChHHHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFF-ITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~-V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ++.|.-+|+||-|.+++.+|.  +.||....-.....+.....+ +... +|     ++..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence            578889999999999999999  777775444433323332233 3321 11     3556667766654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=92.93  E-value=5.5  Score=38.96  Aligned_cols=99  Identities=16%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             CeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022480          101 DATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  179 (296)
Q Consensus       101 ~~t~V~V~~~Dr-pGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~  179 (296)
                      +...|+|...+. +|.++++...|.++|+||..-..+  .+..  .|.+..          +..+++...|.+ + +  .
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~-~--~  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-L-G--L  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-h-C--C
Confidence            445677766555 999999999999999999977444  2221  244432          122333322222 1 0  0


Q ss_pred             CchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 022480          180 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES  247 (296)
Q Consensus       180 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~  247 (296)
                                                 .+.+.+   +...|.|.+.   ++||++.++.++|.+.|++|.+
T Consensus       332 ---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 ---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                                       011112   3567777665   8999999999999999999974

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.77  E-value=0.54  Score=49.41  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=37.4

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD  259 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D  259 (296)
                      .+.|.|.+.||+|||.+|+++|+..++||......+.+.+...
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~  669 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFAT  669 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEE
Confidence            6789999999999999999999999999999999876444333

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=92.71  E-value=2  Score=33.49  Aligned_cols=70  Identities=14%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      .+.+.+.+..+|+||-|+++-.+|+.+|+|+.+-.-.-.... +.-.|+|.-  +|.  .+ ..++.+-..|.+.+
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~-~~~~~~l~~L~~~~   82 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SA-PALDPIIKSLRNDI   82 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CC-HHHHHHHHHHHHHh
Confidence            344677777799999999999999999999987666555432 234577776  454  13 34344444444433

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.68  E-value=0.076  Score=40.77  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=29.0

Q ss_pred             EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 022480          104 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV  135 (296)
Q Consensus       104 ~V~V~~~D-rpGLLa~i~~vL~~~glnI~~A~I  135 (296)
                      +|+|.|+| +.|++++++++|+++|+||.+-+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            47999999 999999999999999999986554

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.49  E-value=0.29  Score=47.78  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=40.8

Q ss_pred             CcEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022480          216 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  267 (296)
Q Consensus       216 ~~TvleV~t~-DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g  267 (296)
                      ..+.|.+.-+ |+||-|++|..+|+++||||.+.++ .....-.-.|+|.-.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence            4677888886 9999999999999999999999999 4443344449987433

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.40  E-value=0.9  Score=44.63  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=43.6

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCC
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA  269 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~  269 (296)
                      ..|.|-+...|+||.|+++.+.|+.+|||+.+.+---.+ ..-+=.|||.-+|+.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~  350 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL  350 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC
Confidence            356677777899999999999999999999999997544 446667888657754

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.32  E-value=0.091  Score=40.31  Aligned_cols=64  Identities=16%  Similarity=0.199  Sum_probs=42.6

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEe-----cC----CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          219 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDT-----EG----LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       219 vleV~t~D-RPGLL~dIt~~La~~gv~I~~AkI~T-----~G----~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      +|+|.+.| ++|++++|+++|+++|+||...+--+     .+    .+..-.|.++  |.+..   .+.|+++|...-.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~--~~~~~---~~~lr~~L~~la~   74 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR--GQPAD---LEALRAALLELAS   74 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe--CCCCC---HHHHHHHHHHHhc
Confidence            47889999 99999999999999999997655421     12    1333356664  44422   3456666664433

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00657 asp_kinases aspartate kinase

Probab=92.18  E-value=5  Score=39.77  Aligned_cols=108  Identities=16%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             CeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022480          101 DATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH  178 (296)
Q Consensus       101 ~~t~V~V~~~Dr--pGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~  178 (296)
                      +...|+|.+.+-  +|.++++.+.|.++|++|......+....  -.|.|...          ..++..+.|.. +... 
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s--Is~~I~~~----------~~~~a~~~L~~-~~~~-  366 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS--ISFTVDKE----------DADQAKTLLKS-ELNL-  366 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce--EEEEEEHH----------HHHHHHHHHHH-HHHh-
Confidence            445667765333  79999999999999999986643222211  12444331          11222222221 1100 


Q ss_pred             CCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480          179 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       179 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                      .                        ....|.+.+   +.+.|.|.+   .++||++++|.++|++.|++|....
T Consensus       367 ~------------------------~~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       367 S------------------------ALSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             c------------------------CcceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            0                        001122222   357788865   4889999999999999999998776

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.15  E-value=0.57  Score=40.96  Aligned_cols=61  Identities=23%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      -+.+.+.++||.|.+++-.+++.|.||.+++-...++--....|..-+|-.  +  .+.|.+.|+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~--d--~e~l~~~lk   64 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID--D--FEKLLERLK   64 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC--C--HHHHHHHhh
Confidence            367889999999999999999999999999987655433344444334433  1  344545444

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.12  E-value=9.8  Score=41.04  Aligned_cols=113  Identities=12%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+...|+|.+.   +++|+++++...|.++|+||......+....+  .|.|..          +..++..+.|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~----------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ----------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence            45667888754   68999999999999999999765443322111  244443          1222233333332211


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                             .+.    .     .+      ...|.+.+   +...|.|.+.   ++||++.++.++|.+.|++|....
T Consensus       381 -------el~----~-----~~------~~~i~~~~---~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        381 -------ELK----E-----GL------LEPLEVEE---NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             -------Hhc----c-----CC------cceEEEeC---CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence                   000    0     00      01122222   4677888776   799999999999999999998774

>PLN02551 aspartokinase

Probab=92.05  E-value=12  Score=38.19  Aligned_cols=114  Identities=16%  Similarity=0.248  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+.+.|+|.+.   +++|.++++...|.++|++|.--.  +. +.- -.|.+... +   +   ...+.+++.|...+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e~s-Is~~v~~~-~---~---~~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-EVS-ISLTLDPS-K---L---WSRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-CCE-EEEEEehh-H---h---hhhhhHHHHHHHHHHH
Confidence            35567788655   689999999999999999998652  22 211 13555432 1   1   1123344344332211


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                              +.           +   +   ..|.+.+   +...|.|.+.  .+||+++++.++|++.||||......+
T Consensus       433 --------l~-----------~---~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        433 --------LE-----------K---I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             --------hh-----------c---C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence                    10           0   0   1122222   3566666654  689999999999999999998876433

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.01  E-value=0.54  Score=41.10  Aligned_cols=47  Identities=11%  Similarity=0.134  Sum_probs=39.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      -+.+.+.++||.|.+++++++++|.||..++.+..+++-....|..-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            46788999999999999999999999999999999887543344443

>PRK07431 aspartate kinase; Provisional

Probab=91.96  E-value=17  Score=37.51  Aligned_cols=136  Identities=14%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeCC--eEEE-EEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          101 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       101 ~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~--~~~d-~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      +...|++. .++++|+++++.+.|.++|++|..-......+  +..+ .|.+..          +.+.++...+.+ +..
T Consensus       438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l~~  506 (587)
T PRK07431        438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-LAK  506 (587)
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH
Confidence            44455554 67889999999999999999998764432222  2232 243332          222222222222 211


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      . ..                        ...+.+.+   +...|.|.+.   .+||+++++.++|.+.|++|....  | 
T Consensus       507 ~-~~------------------------~~~i~~~~---~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~-  555 (587)
T PRK07431        507 Q-LP------------------------GAEVEDGP---AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T-  555 (587)
T ss_pred             h-cC------------------------CceEEEeC---CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c-
Confidence            0 00                        01122222   3577888876   899999999999999999997665  2 


Q ss_pred             CCeeeeE-EEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          254 GLVAKDK-FHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       254 G~ra~D~-F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                        ....+ |.|..       +..++...+|...+.
T Consensus       556 --S~~~Is~vV~~-------~~~~~av~~Lh~~f~  581 (587)
T PRK07431        556 --SEIRTSCVVAE-------DDGVKALQAVHQAFG  581 (587)
T ss_pred             --cceEEEEEEeH-------HHHHHHHHHHHHHhc
Confidence              33333 55522       234556677776663

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.84  E-value=0.53  Score=34.17  Aligned_cols=36  Identities=17%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             CCCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEE
Q 022480           99 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGT  134 (296)
Q Consensus        99 ~~~~t~V~V~~~----DrpGLLa~i~~vL~~~glnI~~A~  134 (296)
                      +.++..|+|.++    |.||+++++.+.|++.|+||....
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            346678899988    799999999999999999998766

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.69  E-value=1.2  Score=39.92  Aligned_cols=41  Identities=12%  Similarity=0.299  Sum_probs=35.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  140 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~  140 (296)
                      .....+.+.-.|+||.+.+++.+|.++|+||-..++.....
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~  186 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI  186 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence            34456777889999999999999999999999999988753

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK06545 prephenate dehydrogenase; Validated

Probab=91.47  E-value=0.4  Score=46.25  Aligned_cols=50  Identities=20%  Similarity=0.413  Sum_probs=41.9

Q ss_pred             CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      +.++.|.|.-+||||-|++|+..|.+.||||.+.+|.-..+...-++.+.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            35799999999999999999999999999999999965555555555554

>PRK09034 aspartate kinase; Reviewed

Probab=91.32  E-value=13  Score=37.11  Aligned_cols=111  Identities=15%  Similarity=0.257  Sum_probs=66.7

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      +.+.|+|.+   .+++|+++++..+|+++|+||.--   +.+. .--.|.|... +   + +...+..+...|...+.  
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~-~---~-~~a~~~~l~~el~~~~~--  375 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRER-Q---L-TPKKEDEILAEIKQELN--  375 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHH-H---h-hHHHHHHHHHHHHHhhC--
Confidence            445677764   678999999999999999999874   2222 2123555432 1   1 00010222222211110  


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                                                . ..|.+.+   +...|.|.+.   ++||++++|..+|++.|++|....-.+
T Consensus       376 --------------------------~-~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        376 --------------------------P-DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             --------------------------C-ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence                                      0 0122222   3577777553   899999999999999999999885433

>PRK06382 threonine dehydratase; Provisional

Probab=91.28  E-value=0.56  Score=46.12  Aligned_cols=65  Identities=26%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe----c-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT----E-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T----~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      ..+.+.|.-+|+||-|.+|+++|.++|+||.+.....    . .+.+.=.|.|...+    .+..++|.+.|++
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~----~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG----QDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            3689999999999999999999999999998877641    1 22344445553332    2234466666654

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.17  E-value=0.35  Score=35.11  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             cEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          217 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~----DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      ...|.|.+.    |.||++++|++.|++.||+|....  |   .-.|.|.|.
T Consensus         6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~   52 (65)
T PF13840_consen    6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK   52 (65)
T ss_dssp             EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred             EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence            567777777    899999999999999999998776  3   345666664

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.16  E-value=2  Score=32.66  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=37.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      ++.|.-+||||=|.+++++|...  ||....-.-. .+.+.-.+.+.-.+.   .++.+++.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence            57888999999999999999944  4443333322 234444444443331   2355666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=90.68  E-value=2.5  Score=41.35  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe----CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~----~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ....+.|.-+|+||-|++++..+.++|.||.+-.....    +.+...+.+..+  .    .+++..+.|.+.|++
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie--~----~~~~~~~~l~~~L~~  395 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLE--T----RGPEHIEEILDALRD  395 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEE--e----CCHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999887642    223343333333  1    124555666666554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=90.58  E-value=1.2  Score=44.06  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      ..+.|.+...|+||.|++|+.+|.++|++|.+..-....+....++.+++
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            46889999999999999999999999999998866543334455666665

>PRK09181 aspartate kinase; Validated

Probab=90.55  E-value=6.1  Score=39.93  Aligned_cols=105  Identities=11%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          101 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       101 ~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      +.+.|+|.+.   +.+|+.+++.+.|.++|++|.  .+.+....  -.|.|..  +      .+.++++.+.|...+.. 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~s--is~~v~~--~------~~~~~~~~~~L~~~~~~-  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANT--ITHYLWG--S------LKTLKRVIAELEKRYPN-  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcE--EEEEEcC--C------hHHHHHHHHHHHHhcCC-
Confidence            5667777544   789999999999999999998  23333221  2354532  1      12334443333322210 


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEI  250 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~D--RPGLL~dIt~~La~~gv~I~~AkI  250 (296)
                                                  ..|..    .+..+|.|.+..  +||+.+++.++|++.||||....-
T Consensus       395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence                                        01111    235677777654  899999999999999999987653

>PRK07431 aspartate kinase; Provisional

Probab=90.49  E-value=8.7  Score=39.59  Aligned_cols=125  Identities=14%  Similarity=0.248  Sum_probs=73.0

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+...|.|.|.   +.+|+++++..+|.+.|+||..-.   ..+..+ .|.|..          +..++.-+.|.+.+..
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcH----------HHHHHHHHHHHHHhcc
Confidence            45667888875   799999999999999999997554   222222 244443          2234444455555532


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~-t~DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      +..  ...+.       +..-+.....+ +-|...   .+...|+|. ..++||++++|...|+++|++|.....+
T Consensus       412 ~~~--~~~~~-------~~~~~~~~~~v-~gIa~~---~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        412 EDS--QIEIN-------PTASGQDEPEV-RGVALD---RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             CCc--ccccC-------ccccCCCCCcE-EEEEcc---CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            100  00010       00000000001 112211   234556554 5688999999999999999999998553

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=90.30  E-value=3.9  Score=30.51  Aligned_cols=57  Identities=12%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      ..+.||++++|.++|+++|++|...-.   ++ ..=.|-+.+...-+.++..++|.+.|+.
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            458899999999999999999999842   33 2223444432211444445677777766

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=90.09  E-value=2.1  Score=35.47  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  143 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~  143 (296)
                      ++-|..+|+||-|.+|+++|.++++|+--...|++.....
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA  110 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA  110 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence            6788899999999999999999999999999999987654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.63  E-value=0.96  Score=46.08  Aligned_cols=61  Identities=16%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV  279 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~  279 (296)
                      +.+.+-+.-.|+||.+..|+.+|.++||||..+++.-.  |+.+.=++.+   .++++++..++|+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~  513 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELR  513 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHh
Confidence            44556667799999999999999999999999998754  3444433333   3355555445543

>PRK06382 threonine dehydratase; Provisional

Probab=89.60  E-value=2.5  Score=41.55  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN  136 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~  136 (296)
                      ...+.+.|..+|+||-|.+++.+|.++|+||.+-...
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            3456899999999999999999999999999987664

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.57  E-value=1.4  Score=42.53  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=41.8

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEe
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  149 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~  149 (296)
                      ..++.|.|.-+||||-++.++..|...|+||.+-+|....+...-++.+.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            56789999999999999999999999999999999987766443334443

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=89.51  E-value=2.8  Score=31.02  Aligned_cols=46  Identities=15%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEee
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  150 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~  150 (296)
                      +.+..+|+||-|+++.+.|+.+|+|+.+-.-.-..+. +.-.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            4555689999999999999999999987665555442 234577776

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11898 prephenate dehydratase; Provisional

Probab=89.22  E-value=2.3  Score=39.92  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=46.7

Q ss_pred             cEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          217 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       217 ~TvleV~t~D-RPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .|.|-+...+ +||-|+++.+.|+++|||+.+.+..-...+ -.=.|||.-+|+. .++..+++.+.|+.
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence            4556566654 699999999999999999999998755444 4457888657754 44333444455554

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.10  E-value=1.5  Score=38.13  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      .++.+.-.|.||.|.++++.|+..|+||.+-.+..+...-+-...+.-  .|    ++..+++|.+.|....
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kLi   70 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhhc
Confidence            467888899999999999999999999999999777654443333333  23    2356677777777644

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=88.95  E-value=3.7  Score=30.69  Aligned_cols=49  Identities=16%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  155 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~  155 (296)
                      +.+..+|+||-|+++-..|+.+|+|+..-.-....+. +.-.|+|.-  +|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC
Confidence            4455689999999999999999999987666555442 334577776  454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.67  E-value=0.93  Score=44.76  Aligned_cols=60  Identities=15%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEE
Q 022480           87 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  148 (296)
Q Consensus        87 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V  148 (296)
                      ++.|.|....  ......|.+.-.|+||.+++++.+|+++|+||..-++...++....+|-+
T Consensus       325 vn~~~~~~~~--~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        325 VNFPEVSLPE--HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             eeccccccCC--CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            3445444322  33556888899999999999999999999999999998888666544433

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=88.62  E-value=29  Score=34.90  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+.+.|+|.+.   ..+|.++++...|.++|+||..-........  -.|.+...          ...+....|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHhh
Confidence            45566776643   3459999999999999999975433333333  23666442          112223333332211


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                        .     +                 .   ++.+..   +...|.+.+   ...||..+++.++|++.||||.+..    
T Consensus       373 --~-----~-----------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----  418 (447)
T COG0527         373 --L-----L-----------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----  418 (447)
T ss_pred             --h-----c-----------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----
Confidence              0     0                 0   112222   235555554   4789999999999999999999887    


Q ss_pred             CCeeeeEEEEE
Q 022480          254 GLVAKDKFHVS  264 (296)
Q Consensus       254 G~ra~D~F~V~  264 (296)
                      -....=.|.|.
T Consensus       419 sSe~~Is~vV~  429 (447)
T COG0527         419 SSEISISFVVD  429 (447)
T ss_pred             cCCceEEEEEc
Confidence            12233346663

>PLN02317 arogenate dehydratase

Probab=88.51  E-value=3.1  Score=40.87  Aligned_cols=67  Identities=13%  Similarity=0.223  Sum_probs=47.5

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC  281 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r---------------a~D~F~V~~~g~~L~~~~~~~L~~~  281 (296)
                      .|.|-+.-.|+||-|+++..+|+.+|||+.+.+-.-...+               -.=.|||.-+|+. .++..++..+.
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~  361 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH  361 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence            4777777789999999999999999999999988655443               2337888656644 33333333445


Q ss_pred             HHH
Q 022480          282 LRY  284 (296)
Q Consensus       282 L~~  284 (296)
                      |+.
T Consensus       362 L~~  364 (382)
T PLN02317        362 LQE  364 (382)
T ss_pred             HHH
Confidence            544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=88.46  E-value=1  Score=45.91  Aligned_cols=61  Identities=13%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV  279 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~  279 (296)
                      +.+.+-+.-.||||.+..|+++|.+++|||..+++.-.  |+.+.=++.+   .++++++.+++|+
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~  512 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIK  512 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHh
Confidence            34555667799999999999999999999999998754  4444433333   3366655555554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=88.41  E-value=5.4  Score=29.75  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHH
Q 022480          224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRY  284 (296)
Q Consensus       224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~-~~~~L~~~L~~  284 (296)
                      ..++||++++|..+|+++|++|...-  + ++ ..=.|-+.. ..+..+. ..++|.+.|+.
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~-~d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN-TGSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec-cccchhHHHHHHHHHHHHh
Confidence            46899999999999999999999984  2 33 222344433 2222222 22356666555

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=88.09  E-value=2.4  Score=42.55  Aligned_cols=54  Identities=13%  Similarity=0.078  Sum_probs=43.1

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee--EEEEEeCCCC
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD--KFHVSYGGAA  269 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D--~F~V~~~g~~  269 (296)
                      ..+.|-+...|+||-|+++.+.|+.+|||+.+.+.........+  .|||.-+|+.
T Consensus        30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~   85 (464)
T TIGR01270        30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH   85 (464)
T ss_pred             ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence            45777777799999999999999999999999988765544444  7888656654

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=87.93  E-value=3.9  Score=39.58  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN  136 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~  136 (296)
                      ..+.|..+|+||.|++++..++++|.||.+-...
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            3889999999999999999999999999987554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=87.76  E-value=3.9  Score=39.58  Aligned_cols=64  Identities=20%  Similarity=0.278  Sum_probs=44.2

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe---c--CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT---E--GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T---~--G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      ...+.|.-+||||-|.+|++.++++|.||....-..   .  -+.+.=.+.+...+    ....++|.+.|++
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~----~~~~~~i~~~L~~  373 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG----KEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            458999999999999999999999999998875441   1  13333334443232    2345667777654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.75  E-value=5.9  Score=27.62  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=27.7

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          219 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       219 vleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      .|.+.+   .+.||++++|.++|++.|++|....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~   39 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS   39 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            455555   4889999999999999999998885443

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=87.35  E-value=3.7  Score=41.00  Aligned_cols=67  Identities=18%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~  285 (296)
                      .+.|-+...|+||-|++|.++|+++|||+.+.+..... ..-+=.|||.-+|+. . +..+++.+.|+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~-~-~~v~~aL~~Lk~~   83 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS-D-RKLEGVIEHLRQK   83 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc-c-HHHHHHHHHHHHh
Confidence            57777778999999999999999999999999886543 334457888756765 2 3334444555543

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=86.60  E-value=1.7  Score=33.00  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  138 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~  138 (296)
                      |+++|+-||-.|++++-+|..+|.-|.+|.|...
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~   36 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRH   36 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhh
Confidence            6789999999999999999999999999999654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=85.77  E-value=3.2  Score=35.96  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=38.6

Q ss_pred             cEEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeE-EEEEeCCCCCChHHHHHH
Q 022480          217 RSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDK-FHVSYGGAALNSSLSQVL  278 (296)
Q Consensus       217 ~TvleV~t--~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~-F~V~~~g~~L~~~~~~~L  278 (296)
                      .-++++..  ++.||+|+.+++.++++||+|..+-.. ..+-..+. .+|- ..++|......+|
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IV-te~~iP~~li~el  155 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIV-TERPIPGDLIDEL  155 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEE-EeccCCHHHHHHH
Confidence            44566655  678999999999999999999988653 23233332 2232 3446655544444

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.57  E-value=3.1  Score=36.16  Aligned_cols=65  Identities=17%  Similarity=0.307  Sum_probs=44.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeee-EEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D-~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      -++.+--.|.||.|.+++-.|++.|+||.+..+. |+-....- .+.+  .|.   +...+++.+.|.+.++
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g~---~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SGD---EQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cCC---cchHHHHHHHHHhhcc
Confidence            4567778899999999999999999999999985 44333222 2222  331   2235666666666555

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=84.98  E-value=1.1  Score=45.46  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=33.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  254 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G  254 (296)
                      .++|.|.||.|+..+|...|..+++|+...+|...|
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~   37 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG   37 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence            479999999999999999999999999999998764

>PRK08198 threonine dehydratase; Provisional

Probab=84.83  E-value=7.4  Score=38.04  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=32.4

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      ...+.|.-+|+||-|.++.+.+.++|.||......
T Consensus       327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            57999999999999999999999999999988765

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=84.78  E-value=2  Score=39.97  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=37.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  143 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~  143 (296)
                      ...++.+..-|.||.+.+|+++|+..|+||.+--|.-+....+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L  118 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL  118 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence            3458899999999999999999999999999988877766554

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=84.24  E-value=6  Score=29.37  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          225 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       225 ~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .-.||++++|.++|+++|++|...-.   ++ ..=.|-+..  ..+.++..++|.+.|+.
T Consensus        12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~~~~~~~l~~l~~el~~   65 (73)
T cd04934          12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--ENAEDTNLDAAVKDLQK   65 (73)
T ss_pred             ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--hhcChHHHHHHHHHHHH
Confidence            45699999999999999999999843   33 222344433  23333345677777765

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=83.96  E-value=6.2  Score=37.18  Aligned_cols=53  Identities=21%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGR  155 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~  155 (296)
                      ..|.+.+..+|+||.|+++-++|+.+|+|...-.-.-.+.+. .-.|+|.-  +|+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~  246 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH  246 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC
Confidence            367888888899999999999999999999876665555543 35577776  465

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.76  E-value=6.1  Score=39.18  Aligned_cols=51  Identities=14%  Similarity=0.213  Sum_probs=40.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      ...+-|.+...|+||.|++++++|.++|+||.+-......++....+++++
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            345688899999999999999999999999998766554444455666776

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=83.43  E-value=13  Score=25.99  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      .|.+.+.   ++||++++|.++|++.|++|....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            4555554   789999999999999999998886544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=83.37  E-value=8.5  Score=36.17  Aligned_cols=52  Identities=17%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  155 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~  155 (296)
                      -|.+.+..+|+||.|+++-++|+.+|+|+.+-.-.-.+++ +.-.|+|.-  +|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence            4667777799999999999999999999987766666543 345688876  465

>PRK09084 aspartate kinase III; Validated

Probab=82.85  E-value=37  Score=33.95  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+...|+|.+.   +.+|.++++...|.++|+||.--..  . + .--.|.|...  .  .. ......+.+.+.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--s-e-~sIs~~i~~~--~--~~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--S-E-VSVSLTLDTT--G--ST-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--c-C-cEEEEEEech--h--hh-hhhhHHHHHHHHHHHhc
Confidence            35567788654   6899999999999999999987642  2 2 1123556542  1  00 01112222222221210


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                        .                          ..|.+.+   +...|.|.+.   ++||+++++..+|.+.  +|..   -..
T Consensus       375 --~--------------------------~~i~~~~---~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~---I~q  418 (448)
T PRK09084        375 --L--------------------------CRVEVEE---GLALVALIGNNLSKACGVAKRVFGVLEPF--NIRM---ICY  418 (448)
T ss_pred             --C--------------------------CeEEEEC---CeEEEEEECCCcccCcChHHHHHHHHHhC--CeEE---EEE
Confidence              0                          0122222   4577888876   7999999999999874  4433   223


Q ss_pred             CCeeeeE-EEEE
Q 022480          254 GLVAKDK-FHVS  264 (296)
Q Consensus       254 G~ra~D~-F~V~  264 (296)
                      |.....+ |.|.
T Consensus       419 gsSe~sIS~vV~  430 (448)
T PRK09084        419 GASSHNLCFLVP  430 (448)
T ss_pred             cCCCCcEEEEEc
Confidence            4443443 5553

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=82.43  E-value=15  Score=26.05  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.2

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 022480          219 LLYIETA---DRPGLLVEIMKIIADVNVDVE  246 (296)
Q Consensus       219 vleV~t~---DRPGLL~dIt~~La~~gv~I~  246 (296)
                      .|.|.+.   +.||+++++.++|.+.|++|.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4556664   899999999999999999995

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=82.40  E-value=2.8  Score=27.85  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      .|+|.+.   +.+|.++++.++|+++|++|......
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~   37 (60)
T cd04868           2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS   37 (60)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence            3445544   48999999999999999999877543

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=82.38  E-value=10  Score=30.88  Aligned_cols=49  Identities=4%  Similarity=0.114  Sum_probs=37.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEee
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  150 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~  150 (296)
                      .+.+.+..+|+||-|+++-..|+.+|+|+.+-.-....+. +.-.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4666666799999999999999999999987666555432 223477765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=81.75  E-value=11  Score=29.06  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=40.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV  263 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V  263 (296)
                      .+.+++.+.++||.|.+|.++-...|..|.....++.  ++++.=.|.|
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV   51 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV   51 (86)
T ss_pred             eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence            4789999999999999999999999999999888775  6666666666

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=81.51  E-value=9.2  Score=26.62  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      ..+++|+.++|.++|+++|+++....  | ++ ..=.|++..
T Consensus        10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~   47 (62)
T cd04890          10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD   47 (62)
T ss_pred             cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence            35789999999999999999999883  3 33 333466643

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK09224 threonine dehydratase; Reviewed

Probab=81.49  E-value=65  Score=32.74  Aligned_cols=128  Identities=13%  Similarity=0.196  Sum_probs=75.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC-
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP-  179 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~-  179 (296)
                      .-..+.|.-|||||-|.+++.+|.  +.||..-+-...+.....+|+...- .+.    +...+.|.+.|++.  ++.. 
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~~  397 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPVV  397 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCeE
Confidence            456789999999999999999998  6888876555444444555654442 121    12256777777651  1110 


Q ss_pred             Cc-hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022480          180 ES-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       180 ~~-~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      +. ...+++         ...+++ +-.+   .....+--++.+.=+.|||-|-++..+|. -+-||...+-.
T Consensus       398 ~ls~ne~~k---------~h~r~~-~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        398 DLSDDELAK---------LHVRYM-VGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             ECCCCHHHH---------HHHHhc-cCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence            00 011110         000011 1110   00001235778889999999999999777 77888888774

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=80.64  E-value=13  Score=28.04  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          224 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       224 t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      ..+.||++++|.++|+++|++|...-  + ++ ..=.|-+..
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~   48 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP   48 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence            46889999999999999999999984  2 33 223455544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.54  E-value=5.6  Score=40.57  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  140 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~  140 (296)
                      ....+.+...|+||.+..++.+|.++|+||..-++.....
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~  490 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREA  490 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCC
Confidence            4445666779999999999999999999999999887543

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=80.31  E-value=17  Score=25.17  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=32.1

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          219 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       219 vleV~t~---DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      .+.+.+.   +.||+++++.+.|++.|++|......+.+  ..=.|.+..
T Consensus         3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~   50 (66)
T cd04924           3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE   50 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence            4555554   78999999999999999999888654422  222366643

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 5/45 (11%), Positives = 20/45 (44%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 264
           + I   D+ G+  +I  +I+  + ++ +  ++ +  +      + 
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.8
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.97
2f06_A	144	Conserved hypothetical protein; structural genomic	98.54
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.26
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.19
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.18
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.09
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.03
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.76
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.72
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.45
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.38
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.31
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.3
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.28
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.27
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.26
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.18
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.17
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.15
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.12
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.11
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.1
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.06
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.04
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.93
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.79
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.6
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.48
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.47
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.23
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.06
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.0
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.88
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.69
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.83
2f06_A	144	Conserved hypothetical protein; structural genomic	94.71
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.21
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.84
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.53
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	93.17
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.09
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	93.01
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.93
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	92.92
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.31
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	91.36
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.21
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	88.94
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	87.4
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	87.2
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	86.81
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	84.23
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	83.63
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	81.23
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	81.14
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	80.35

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.80  E-value=9.6e-19  Score=153.32  Aligned_cols=156  Identities=15%  Similarity=0.181  Sum_probs=113.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  180 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~  180 (296)
                      ..++|+|+|+|||||++.|+++|+++|+||++|++++..+++.-.|.+...  +.  ..+.+++.|++.|..++.+.  +
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~~--~   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIST--R   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEEE--E
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHhc--C
Confidence            457999999999999999999999999999999999999988657777653  21  22346677777766533221  0


Q ss_pred             chhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Ceee
Q 022480          181 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAK  258 (296)
Q Consensus       181 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~  258 (296)
                          +    ....+   .      .+  .  ......++|+|.|+|||||+++|+++|+++|+||..++..|.+  +++.
T Consensus        78 ----~----~~~~~---~------~~--~--~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~  136 (195)
T 2nyi_A           78 ----R----ASSVA---E------RH--V--SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGF  136 (195)
T ss_dssp             ----E----CCCC---------------C--CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTC
T ss_pred             ----C----eEEEE---e------CC--c--CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCC
Confidence                0    00001   0      01  1  2223479999999999999999999999999999999999998  7889


Q ss_pred             eEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 022480          259 DKFHVSY-GGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       259 D~F~V~~-~g~~L~~~~~~~L~~~L~~~  285 (296)
                      +.|+++- -+.+ .... ++|+++|...
T Consensus       137 ~~F~m~~~~~~~-~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A          137 TLFRMGSRVAFP-FPLY-QEVVTALSRV  162 (195)
T ss_dssp             EEEEEEEEEEEE-GGGH-HHHHHHHHHH
T ss_pred             CeEEEEEEEEcC-CCcc-HHHHHHHHHH
Confidence            9999985 2222 1124 5666666543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.76  E-value=5.3e-17  Score=141.25  Aligned_cols=155  Identities=13%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCc
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  181 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~  181 (296)
                      .++|+|+|+||||++++++++|+++|+||.++++++..+++.-+|.+..+        +..++.|++.|...+...... 
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~~~~~-   76 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQHDLI-   76 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHHHTCE-
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHhcCCE-
Confidence            47899999999999999999999999999999999999988667777642        246788888887754321110 


Q ss_pred             hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC----ee
Q 022480          182 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VA  257 (296)
Q Consensus       182 ~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~----ra  257 (296)
                       ..+     +  +. .+      ++    .......++|+|.|+||||+|++|+++|+++|+||.+++..|.++    +.
T Consensus        77 -~~~-----~--~~-~~------~~----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~  137 (192)
T 1u8s_A           77 -TMM-----K--RT-SP------HD----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSE  137 (192)
T ss_dssp             -EEE-----E--EE-CC------CC----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-------
T ss_pred             -EEE-----E--eC-CC------CC----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCC
Confidence             000     0  00 00      01    111224789999999999999999999999999999999999984    68


Q ss_pred             eeEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 022480          258 KDKFHVSY-GGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       258 ~D~F~V~~-~g~~L~~~~~~~L~~~L~~~  285 (296)
                      .+.|+++- -+.+ .....++|+++|...
T Consensus       138 ~~~F~~~~~~~~~-~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A          138 QNQFHIAISARVD-SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             -CEEEEEEEEEEC-TTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence            99999984 2211 111345566666543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.97  E-value=4e-08  Score=94.02  Aligned_cols=138  Identities=8%  Similarity=0.056  Sum_probs=92.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  180 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~  180 (296)
                      ...+|+|.|+||||+++.|+++|+++|+||.+...+..++.|.-...+.-+ .+.     ...+.|++.|.. +.. ..+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-~~~-----~~~~~l~~~l~~-~~~-~~~   82 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-ADV-----ADGPALRHDVEA-AIR-KVG   82 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-HHH-----HTSHHHHHHHHH-HHH-HTT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-CCc-----CCHHHHHHHHHH-HHH-HcC
Confidence            457899999999999999999999999999999999998877433333321 110     022567777765 322 111


Q ss_pred             chhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCeeee
Q 022480          181 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD  259 (296)
Q Consensus       181 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~D-RPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D  259 (296)
                      +.-.+        ....      ...+    .....++++++.+.| +||++.+|+.+|+++|+||...+.-+......=
T Consensus        83 ~~~~~--------~~~~------~~~~----~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~  144 (415)
T 3p96_A           83 LDVSI--------ERSD------DVPI----IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGL  144 (415)
T ss_dssp             CEEEE--------EECS------SSCS----SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEE
T ss_pred             eEEEE--------EECC------cccc----cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEE
Confidence            11000        0000      0000    122358999999999 999999999999999999999988773332322


Q ss_pred             EEEEE
Q 022480          260 KFHVS  264 (296)
Q Consensus       260 ~F~V~  264 (296)
                      .|++.
T Consensus       145 ~~~v~  149 (415)
T 3p96_A          145 ELRVS  149 (415)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            36664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.54  E-value=6.9e-06  Score=67.39  Aligned_cols=111  Identities=12%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCc
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  181 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~~~~~  181 (296)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+ ++ -.|.+.         ++   ++.++.|.+ . +  .  
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~-~~~~~~---------d~---~~a~~~L~~-~-G--~--   67 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI-LRGIVS---------DP---DKAYKALKD-N-H--F--   67 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE-EEEEES---------CH---HHHHHHHHH-T-T--C--
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE-EEEEeC---------CH---HHHHHHHHH-c-C--C--
Confidence            57888999999999999999999999999887765544 32 123321         12   223333332 1 1  0  


Q ss_pred             hhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEE
Q 022480          182 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF  261 (296)
Q Consensus       182 ~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F  261 (296)
                                           ..    .      ...++-+..+|+||.+++|+++|++.|+||.+......+.+..=.|
T Consensus        68 ---------------------~v----~------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           68 ---------------------AV----N------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             ---------------------CE----E------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             ---------------------eE----e------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence                                 00    0      0156777889999999999999999999998877653344544444


Q ss_pred             EE
Q 022480          262 HV  263 (296)
Q Consensus       262 ~V  263 (296)
                      .+
T Consensus       117 ~~  118 (144)
T 2f06_A          117 RP  118 (144)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.26  E-value=8.3e-06  Score=61.46  Aligned_cols=64  Identities=13%  Similarity=0.122  Sum_probs=46.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .+.|.|.++||||+|++|+++|+++|+||......+.++...-.+.+.-.+..    ..++|.+.|+.
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~----~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ----DFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC----CHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC----CHHHHHHHHHH
Confidence            57899999999999999999999999999999998876544444444223311    24555565554

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.19  E-value=2e-06  Score=74.66  Aligned_cols=74  Identities=11%  Similarity=0.004  Sum_probs=54.1

Q ss_pred             cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480           97 DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus        97 ~~~~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      ......++|+|.|+||||+++.|+++|+++|+||.+++.++.+  +...+.|++... -+.+  ++.. +.|++.|....
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHHHHHHHHHH
Confidence            3444668999999999999999999999999999999999987  323355555442 2211  1234 77887777643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.18  E-value=1.3e-05  Score=60.27  Aligned_cols=65  Identities=11%  Similarity=0.096  Sum_probs=50.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ....|+|.++||||++++++++|+++|+||.+....+..+.+.-.+.+.-+ +.      ..++.|.+.|..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~-~~------~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK------QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC------CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC-CC------CCHHHHHHHHHH
Confidence            346899999999999999999999999999999999887655555555432 21      234667777765

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.09  E-value=9.6e-06  Score=60.33  Aligned_cols=63  Identities=13%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      .+.|.|.+.||||+|++|+++|+++|+||.++...+.++.+...|.+.-.+    ....+++.++|+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~----~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN----TDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            578999999999999999999999999999999988766555555553221    224455555554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.03  E-value=2.2e-05  Score=67.55  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=50.3

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      .++|.|.|+|||||+++|+.+|+++|+||..+++.+.++.-.-.|.+...     ....++|++.|....
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~~~   70 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----PSNITRVETTLPLLG   70 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-----CCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999998866654446666432     124566777666543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.76  E-value=0.00015  Score=53.68  Aligned_cols=63  Identities=10%  Similarity=0.117  Sum_probs=46.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  171 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~  171 (296)
                      .+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-.       +.+.++.+.+.|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            35788999999999999999999999999999998876633344444331       2345555555544

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.72  E-value=0.00068  Score=57.07  Aligned_cols=111  Identities=12%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          100 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       100 ~~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      .+...|+|. .+|+||.++++.++|+++|+||..-......++. .-.|.|...          ..++..+.|.+.. . 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~----------~~~~a~~~l~~~~-~-   90 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG----------DYKQTLEILSERQ-D-   90 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG----------GHHHHHHHHHHSS-T-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech----------HHHHHHHHHHHHH-H-
Confidence            355788888 4999999999999999999999876654332332 234655431          1133334444321 1 


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCC---CcchHHHHHHHHHhCCceEEEEE
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~D---RPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                        +    +      +         +   ..|.+.   .+.+.+.|.+.+   +||+++++.++|++.||||.+..
T Consensus        91 --~----l------~---------~---~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           91 --S----I------G---------A---ASIDGD---DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             --T----T------T---------C---SEEEEE---SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             --H----c------C---------C---ceEEec---CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence              0    0      0         0   012222   246889999887   99999999999999999999943

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.45  E-value=0.00055  Score=63.54  Aligned_cols=66  Identities=14%  Similarity=0.059  Sum_probs=47.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEe--CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ...+++|.|+||||+++.|+++|+++|+||.+++.++.  .+.|.-...+..+ .+ ..    ..+.|++.|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~-~~-~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD-TL-PF----DLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG-GS-SS----CHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC-CC-CC----CHHHHHHHHHH
Confidence            44789999999999999999999999999999999987  3455323333221 11 11    24666666654

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.38  E-value=0.0026  Score=54.07  Aligned_cols=111  Identities=20%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             CCeEEEEE-EeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--C-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022480          100 SDATIVQL-SFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  175 (296)
Q Consensus       100 ~~~t~V~V-~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~-~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~  175 (296)
                      .+.+.|+| ..+|+||.++++.+.|+++|+||..-...+..  + ..--.|.+..          +..++..+.|.+ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-HH
Confidence            45677777 46999999999999999999999876554431  2 2222255543          222333334433 11


Q ss_pred             ccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480          176 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       176 ~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                      .   +    +      +         +   ..+.+.+   +.+.|.|.+.   ++||+++++.++|++.||||.+..
T Consensus        82 ~---~----~------~---------~---~~v~~~~---~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           82 V---Q----G------N---------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             T---T----T------T---------C---SEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             H---h----c------C---------C---CeEEEeC---CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            1   0    0      0         0   1122222   4678888876   999999999999999999999953

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.31  E-value=0.00094  Score=61.47  Aligned_cols=64  Identities=9%  Similarity=-0.076  Sum_probs=46.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+|+|.|+||||+++.+++.|+++|+||.+.+.++..  +.|.-...+..+ .+      ...+.|++.|..
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~------~~~~~L~~~f~~   73 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-DD------FDEAGFRAGLAE   73 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-SS------CCHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-CC------CCHHHHHHHHHH
Confidence            47899999999999999999999999999999999643  444322223221 11      124667777765

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.30  E-value=0.00089  Score=61.69  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+++|.|+||||+++.++++|+++|+||.+.+.++..  +.|.-...+.-+ ++ ..    ..+.|++.|..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~-~~----~~~~L~~~f~~   72 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA-AK-VI----PLASLRTGFGV   72 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES-SC-CC----CHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC-CC-CC----CHHHHHHHHHH
Confidence            46899999999999999999999999999999998543  344322333322 22 11    23666766655

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.28  E-value=0.00072  Score=57.42  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G--~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ...|.|...||||+|++|+.+|+++|+||.++.+.+..  +...=.|.+.  |.   +...++|.+.|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d---~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD---EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc---HHHHHHHHHHHcCCC
Confidence            36789999999999999999999999999999996433  3444455664  32   446788888888654

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.27  E-value=0.00092  Score=61.72  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ...+++|.|+||||+++.|+++|+++|+||.+.+.++..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   47 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDD   47 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecC
Confidence            457899999999999999999999999999999999643

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.26  E-value=0.00032  Score=64.66  Aligned_cols=46  Identities=9%  Similarity=0.115  Sum_probs=39.0

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .++|+|.|+|||||++.|+++|+++|+||....-.+.  ...+.|+.+
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   53 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD--RQSGRFFIR   53 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTTTEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc--CCCCeeEEE
Confidence            5899999999999999999999999999999887653  334567765

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.18  E-value=0.0011  Score=61.04  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ...+++|.|+||||+++.+++.|+++|+||.+.+.++..
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   44 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE   44 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC
Confidence            457899999999999999999999999999999998543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.17  E-value=0.00052  Score=63.72  Aligned_cols=50  Identities=20%  Similarity=0.297  Sum_probs=40.9

Q ss_pred             CCCCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          213 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       213 ~~~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .+...++|+|.|+|||||++.|+++|+++|+||....-.+..  ..+.|+.+
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~--~~g~FfMr   67 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN--LSGWFFMR   67 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET--TTTEEEEE
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC--CCCeEEEE
Confidence            344578999999999999999999999999999998876542  23457765

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.15  E-value=0.0048  Score=51.74  Aligned_cols=122  Identities=16%  Similarity=0.201  Sum_probs=76.6

Q ss_pred             CCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022480           99 NSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL  174 (296)
Q Consensus        99 ~~~~t~V~V~~-~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~-~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L  174 (296)
                      ..+.+.|+|.+ +|+||.++++.++|+++|+||..-......  .+. --.|.|...          ..++..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~----------d~~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD----------FAQEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG----------GHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH----------HHHHHHHHHHHHH
Confidence            34667777776 899999999999999999999875443221  222 234666432          1122233333311


Q ss_pred             cccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeCC---CcchHHHHHHHHHhCCceEEEEEEE
Q 022480          175 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAEID  251 (296)
Q Consensus       175 ~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~D---RPGLL~dIt~~La~~gv~I~~AkI~  251 (296)
                      .        .+                 ..  .+.+.   .+.+.+.|.+.+   +||.++++.++|++.||||....  
T Consensus        83 ~--------~~-----------------~~--~v~~~---~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--  130 (167)
T 2dt9_A           83 A--------EI-----------------GG--EAILR---PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--  130 (167)
T ss_dssp             H--------HH-----------------CC--EEEEE---CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--
T ss_pred             H--------Hh-----------------CC--cEEEe---CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--
Confidence            1        01                 00  12222   246888999886   99999999999999999996553  


Q ss_pred             ecCCeeeeEEEEE
Q 022480          252 TEGLVAKDKFHVS  264 (296)
Q Consensus       252 T~G~ra~D~F~V~  264 (296)
                      |- +. .=.|.|.
T Consensus       131 ~S-e~-~is~vv~  141 (167)
T 2dt9_A          131 TS-EV-RISVIIP  141 (167)
T ss_dssp             EC-SS-EEEEEEE
T ss_pred             cc-CC-EEEEEEe
Confidence            32 22 3445564

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.12  E-value=0.0019  Score=53.41  Aligned_cols=59  Identities=24%  Similarity=0.321  Sum_probs=43.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      .|+|.|.||+|||++|+++|+++++||..+.+.+.|.     +++.-..  ........|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~~--~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFAE--LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEECC--CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEEe--CCHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999987632     4443221  123345566665554

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.11  E-value=0.00051  Score=63.44  Aligned_cols=47  Identities=11%  Similarity=0.229  Sum_probs=39.1

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      ..++|+|.|+|||||+++|+++|+++|+||....-.+.  ...+.|+.+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   55 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD--DLSARFFVR   55 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec--CCCCceEEE
Confidence            35899999999999999999999999999999887653  234456665

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.10  E-value=0.00056  Score=63.03  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=39.1

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      ..++|+|.|+|||||++.|+++|+++|+||....-.+  ....+.|+.+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr   52 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN--DEDSSKFFMR   52 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTTTEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee--cCCCCeEEEE
Confidence            3589999999999999999999999999999887753  2234567775

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.06  E-value=0.0012  Score=56.14  Aligned_cols=66  Identities=12%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~-G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      ...|.|...||||+|++|+.+|+++|+||.++.+. |. .+...=.|.+..+     +...++|.+.|.+..+
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-----~~~leql~kQL~Kl~d   71 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-----DEIVEQITKQLNKLIE   71 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-----HHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-----HHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999999999996 44 2445545566422     4467888888886543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.04  E-value=0.0024  Score=58.76  Aligned_cols=46  Identities=13%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      .++|+|.|+|||||++.|+++|+++|+||....-.+.  ...+.|+.+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   51 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND--TESGHFFMR   51 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec--CCCCceEEE
Confidence            4789999999999999999999999999999887542  233456665

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.93  E-value=0.0035  Score=53.15  Aligned_cols=63  Identities=17%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.|.+.|+||+|++++++|++.|+||.+..+....+ +.. -+|.+. .       ++..++.|.+.|...
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-------cHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999987764 443 345553 2       246778888888763

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.79  E-value=0.0013  Score=62.56  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL  255 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~  255 (296)
                      ...+|+|.|+|||||++.|+++|+++|+||....-.+.++
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~   50 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRH   50 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECC
Confidence            3689999999999999999999999999999999877665

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.60  E-value=0.0071  Score=51.30  Aligned_cols=63  Identities=14%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.|...|+||.|++++++|++.|+||.+..+....+ +.. -+|.+..        ++..++.|.+.|...
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999987663 443 3455542        146778888888763

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.48  E-value=0.0065  Score=52.80  Aligned_cols=65  Identities=11%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ...|.|...|+||.|++|+.+|++.|+||.+..+. |.. +...=++.+...     +...++|.+.|.+.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcCcC
Confidence            57899999999999999999999999999999885 544 333334455322     235677877777643

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.47  E-value=0.05  Score=46.35  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             CeEEEEE-EeCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          101 DATIVQL-SFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       101 ~~t~V~V-~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      +.+.|+| ..+|+||.++++.+.|+++|+||.--......  .+.. -.|.|...  .        +++..+.|.+ +..
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~--~--------~~~a~~~L~~-~~~   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--V--------GPAAVEKLDS-LRN   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT--T--------HHHHHHHHHH-THH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh--H--------HHHHHHHHHH-HHH
Confidence            4455555 36899999999999999999999754432222  3443 34666442  1        1222333333 110


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                             .+.                  ...|.+.+   +...+.|.+.   ++||+.+++.++|++.||||.+..
T Consensus        84 -------el~------------------~~~v~~~~---~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           84 -------EIG------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             -------HHC------------------CSEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -------hcC------------------cceEEEeC---CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                   010                  01122222   3577777765   899999999999999999999877

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.23  E-value=0.0077  Score=53.30  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=31.2

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  254 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G  254 (296)
                      ...|.|.+.||||+|++|+++|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            47889999999999999999999999999999998853

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.06  E-value=0.027  Score=49.11  Aligned_cols=123  Identities=13%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             CCCcEEEEeecCCCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEe--CCeEE-EEEEEeecCCCCCCCChHH
Q 022480           87 IPMPHVLIDQDSNSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQ-TKFFITRLDTGRKVEDPDL  162 (296)
Q Consensus        87 ~~~p~V~i~~~~~~~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~--~~~~~-d~F~V~~~~~g~~l~~~~~  162 (296)
                      +..|.|.--.. ..+...|+|. .+|+||..+++.+.|++.|+||---.....  .++.. -.|.+...          .
T Consensus        21 mE~~vVtGIa~-~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~----------d   89 (200)
T 4go7_X           21 MEDPILTGVAH-DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD----------V   89 (200)
T ss_dssp             CCSCEEEEEEE-ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG----------G
T ss_pred             cccCcEEEEEc-cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh----------h
Confidence            44565533222 3455677776 699999999999999999999976433322  22343 34555431          1


Q ss_pred             HHHHHHHHHHhhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEE---eCCCcchHHHHHHHHH
Q 022480          163 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE---TADRPGLLVEIMKIIA  239 (296)
Q Consensus       163 l~~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~---t~DRPGLL~dIt~~La  239 (296)
                      +++....|.+...        .+.                  ...+.+++   +...|.|.   ...+||+.+++.++|+
T Consensus        90 ~~~~~~~l~~~~~--------~~~------------------~~~v~~~~---~iakVSvVG~GM~~~~GVaak~F~aLa  140 (200)
T 4go7_X           90 GPAAVEKLDSLRN--------EIG------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALA  140 (200)
T ss_dssp             HHHHHHHHHTTHH--------HHC------------------CSEEEEEC---CEEEEEEEEESCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--------hhc------------------eeeEEEec---CeeeeeeeccccccCCCcHHHHHHHHH
Confidence            1222222322111        110                  00122222   23445544   5689999999999999


Q ss_pred             hCCceEEEEE
Q 022480          240 DVNVDVESAE  249 (296)
Q Consensus       240 ~~gv~I~~Ak  249 (296)
                      +.||||....
T Consensus       141 ~~~INI~mIs  150 (200)
T 4go7_X          141 AVGVNIELIS  150 (200)
T ss_dssp             HTTCCCCEEE
T ss_pred             HCCCCEEEEE
Confidence            9999999885

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.00  E-value=0.027  Score=48.85  Aligned_cols=64  Identities=13%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ...+.|...|+||.|++++++|+..|+||.+-.+..+.+ +.. -++.|..  +      +..++.|.++|...
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g--~------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--D------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--C------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC--C------HHHHHHHHHHhcCc
Confidence            468999999999999999999999999999988875554 443 3445543  1      25667777777653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.88  E-value=0.034  Score=45.63  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .|.|.|.||+|++.+|+++|+.+++||....+.+.  +.   +++.-+     ..+.+.+..|...|..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~---i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR---IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE---EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE---EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999665  33   233331     1133566777776665

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.69  E-value=0.19  Score=48.09  Aligned_cols=110  Identities=20%  Similarity=0.240  Sum_probs=70.4

Q ss_pred             CeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeC--CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          101 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       101 ~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~--~~~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      +.+.|+|. .+|++|.++++.+.|+++|+||..-...+..  .+.. -.|.|...       +.++   ..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRR---AMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHH---HHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHH---HHHHHHH-HHH
Confidence            45567777 6899999999999999999999876543332  2322 34555431       1122   2233333 111


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                       +..                     +   ..|.+..   +...+.|.+.   ++||.++++.++|++.||||+...
T Consensus       332 -~~~---------------------~---~~v~~~~---~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          332 -QGN---------------------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             -TTT---------------------C---SEEEEEC---CEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             -HcC---------------------C---ceEEEeC---CeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence             000                     0   0122222   4678888875   899999999999999999999553

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.83  E-value=0.053  Score=47.93  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ...+.|.+.||+|+|++++.+|++++.||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            35789999999999999999999999999999999976

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=94.71  E-value=0.095  Score=42.26  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      ...++|..+|+||.|++|++.|++.|+||....+..
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~   41 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE   41 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence            367888999999999999999999999999988753

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.84  E-value=0.12  Score=49.38  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=42.9

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      +...|-+.-.|+||.+..|+++|.++||||......+.|+.+.=++.+.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            3456778889999999999999999999999999999888887777663

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.53  E-value=0.23  Score=45.44  Aligned_cols=54  Identities=13%  Similarity=0.139  Sum_probs=43.9

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  270 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L  270 (296)
                      .|.|-+..+|+||-|+++...|+.+|||+.+.+-.-.+.+ ..=.|||.-+|+.-
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~  254 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHRE  254 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCC
Confidence            4677777789999999999999999999999999765544 56678886577653

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=93.17  E-value=0.86  Score=45.74  Aligned_cols=124  Identities=15%  Similarity=0.235  Sum_probs=74.2

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022480          100 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  176 (296)
Q Consensus       100 ~~~t~V~V~~~---DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~  176 (296)
                      .+...|.|+|.   .+||..+++..+|.+.|+||..-.   ..+.-+ .|.|...          ..++..+.|.+.+..
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is---tSe~~I-s~vI~~~----------d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS---TSEVKV-SCVIDQR----------DADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE---ECSSEE-EEEEEGG----------GHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe---cCCCEE-EEEEcHH----------HHHHHHHHHHHhhcc
Confidence            46778899976   799999999999999999997654   223222 2555432          223344455555532


Q ss_pred             cCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022480          177 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDT  252 (296)
Q Consensus       177 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~-t~DRPGLL~dIt~~La~~gv~I~~AkI~T  252 (296)
                      +.....        .+ ..+..   -+.-+-|..+.   +.+.|.|. .+|+||+.++|...|++.||+|....-+.
T Consensus       419 ~~t~~~--------~~-~~~~~---~~~v~Gia~~~---~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          419 TLSPPK--------NQ-TDTSH---LPAVRGVALDQ---DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             CBCCCC--------CC-CC------CCSCCEEEEEC---SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             cCCCcc--------cc-ccccc---cCceEEEEeeC---CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecc
Confidence            100000        00 00000   01112233222   34566654 58999999999999999999997765543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.09  E-value=0.33  Score=47.90  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=46.2

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  280 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~~  280 (296)
                      .++.|.+.-.|+||.+..|+..|.++||||..+++...  |+.+.=++.+  + .++.++..++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v--d-~~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--D-QDVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--S-SCCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE--C-CCCCHHHHHHHhc
Confidence            46888899999999999999999999999999999764  4444444444  2 3455555555543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=93.01  E-value=1.4  Score=44.25  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEeC---Ce--EE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          100 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG---SV--KQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       100 ~~~t~V~V~-~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~---~~--~~-d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      .+...|+|. .+|+||+.+++.+.|+++|+||.--......   ++  .. -.|.|..          +.+++..+.|.+
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----------~d~~~a~~~l~~  511 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----------GDSSQAEAILQP  511 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----------HHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----------HHHHHHHHHHHH
Confidence            455667665 6999999999999999999999544443332   12  22 2355543          333444444443


Q ss_pred             hhcccCCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480          173 NLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       173 ~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                       +.. ..+                        ..++.+++   +...|.|.+   ..+||..+++.++|++.||||.+..
T Consensus       512 -~~~-~~~------------------------~~~v~~~~---~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          512 -LIK-DWL------------------------DAAIVVNK---AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             -HTT-TST------------------------TCEEEEEC---CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             -HHH-hcC------------------------CceEEEeC---CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence             211 000                        01122222   467888876   5999999999999999999998766


Q ss_pred             EEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          250 IDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       250 I~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                        |-.-.  =.+.|..       +..++..++|..++.
T Consensus       563 --tSEi~--Is~vV~~-------~~~~~Av~alh~~F~  589 (600)
T 3l76_A          563 --TSEIK--ISCVVPQ-------DRGVDALKAAHSAFN  589 (600)
T ss_dssp             --ECSSE--EEEEEEG-------GGHHHHHHHHHHHTT
T ss_pred             --cCCce--EEEEEeH-------HHHHHHHHHHHHHhC
Confidence              32222  2344432       123445567776654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.93  E-value=0.69  Score=43.15  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=41.6

Q ss_pred             cEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCC
Q 022480          217 RSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALN  271 (296)
Q Consensus       217 ~TvleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~  271 (296)
                      .+.+-+...  |+||-||++...|+.+|||+.+.+-.-.+.+ -.=.|||.-+|+.-.
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d  263 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWE  263 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTS
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCC
Confidence            344444454  7999999999999999999999998765555 455788755887643

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=92.92  E-value=0.32  Score=45.10  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=43.4

Q ss_pred             CcEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022480          216 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  269 (296)
Q Consensus       216 ~~TvleV~t~-DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~  269 (296)
                      +.|.|-+..+ |+||-|+++...|+.+|||+.+.+-.-.+.. .+=.|||.-+|+.
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCC
Confidence            3577777775 9999999999999999999999998755444 4557888547765

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.31  E-value=0.55  Score=42.53  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=41.5

Q ss_pred             CcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeC
Q 022480          216 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYG  266 (296)
Q Consensus       216 ~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~  266 (296)
                      +.|.|-+..   .|+||-|+++...|+.+|||+.+.+-.-.+.. ..=.|||.-+
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence            356666777   89999999999999999999999999765544 5667888546

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=91.36  E-value=1.4  Score=42.67  Aligned_cols=107  Identities=13%  Similarity=0.191  Sum_probs=67.9

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      +.+.|+|.+   ++.+|.++++.++|+++|+||..-.  +....+  .|.|... +-.     ...+++.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~~i--s~~V~~~-d~~-----~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVDSV--SLVIEDC-KLD-----GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETTEE--EEEEEHH-HHT-----TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCCEE--EEEEecc-hHH-----HHHHHHHHHHHHhcC--
Confidence            345677775   6899999999999999999997532  222222  3666542 110     112233333332111  


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~---DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                       .                          ..|.+.+   +...|.|.+.   .+||+.+++.++|++.||||....
T Consensus       365 -~--------------------------~~v~v~~---~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          365 -P--------------------------DSIEIHP---NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -C--------------------------SEEEEEE---EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -C--------------------------CcEEEeC---CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence             0                          0122222   3578888876   599999999999999999998875

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.21  E-value=1.1  Score=42.87  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEE
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  148 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V  148 (296)
                      +...+.+.-.|+||.+.+++.+|.++|+||..-.+.+.|+..+-++-+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            455788899999999999999999999999999999966655433333

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=88.94  E-value=1.7  Score=42.74  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  140 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~  140 (296)
                      ..+..+.+.-+|+||.+..++..|.++|+||...++.....
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~  492 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE  492 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCC
Confidence            34568889999999999999999999999999999988643

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=87.40  E-value=0.55  Score=45.55  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=30.7

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEI  250 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI  250 (296)
                      ..+.+.+...|+||.|++|+.+|.++||+|++..=
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            46888999999999999999999999999998653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=87.20  E-value=2.8  Score=40.25  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=43.7

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  263 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V  263 (296)
                      ....|.+.-.|+||.|..|..+|+++|+||....-.|.|+-+.-+.-+
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            468999999999999999999999999999999999999887766666

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=86.81  E-value=3.9  Score=40.20  Aligned_cols=122  Identities=14%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022480          101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  177 (296)
Q Consensus       101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~L~~~  177 (296)
                      +.+.|+|.+   .+++|.++++.++|+++|+||..-.  +....+  +|.|... +.....  ...+.++.. ...+.. 
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse~si--s~~v~~~-~~~~~~--~~~~~l~~~-~~el~~-  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEVSI--SLTLDPS-KLWSRE--LIQQELDHV-VEELEK-  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETTEE--EEEECCG-GGSSSC--CCHHHHHHH-HHHHTT-
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCCCeE--EEEEech-Hhhhhh--HHHHHHHHH-HHHhCC-
Confidence            556788885   7899999999999999999998752  322222  3666542 111100  000112111 111110 


Q ss_pred             CCCchhHhhhccccCccCCCccccccccceeeeccCCCCcEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCC
Q 022480          178 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGL  255 (296)
Q Consensus       178 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~v~~~~~~~TvleV~t~--DRPGLL~dIt~~La~~gv~I~~AkI~T~G~  255 (296)
                                              +   ..|.+.+   +...|.|.+.  .+||+.+++..+|++.||||....   .|.
T Consensus       411 ------------------------~---~~v~~~~---~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGs  457 (510)
T 2cdq_A          411 ------------------------I---AVVNLLK---GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGA  457 (510)
T ss_dssp             ------------------------T---SEEEEEE---EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECT
T ss_pred             ------------------------C---CeEEEeC---CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecC
Confidence                                    0   0122222   3577777777  889999999999999999998764   454


Q ss_pred             eeee-EEEEE
Q 022480          256 VAKD-KFHVS  264 (296)
Q Consensus       256 ra~D-~F~V~  264 (296)
                      .-.. .|.|.
T Consensus       458 Sei~Is~vV~  467 (510)
T 2cdq_A          458 SKVNISFIVN  467 (510)
T ss_dssp             TCSEEEEEEE
T ss_pred             CcceEEEEEe
Confidence            3333 46664

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=84.23  E-value=3.8  Score=33.71  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=30.3

Q ss_pred             CCeEEEEEEeCC---CccHHHHHHHHHHHCCceEEE
Q 022480          100 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAK  132 (296)
Q Consensus       100 ~~~t~V~V~~~D---rpGLLa~i~~vL~~~glnI~~  132 (296)
                      .+...|.|+|.+   +||.++++..+|.++|+||..
T Consensus       101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A          101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence            467889999887   999999999999999999987

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=83.63  E-value=1.8  Score=41.70  Aligned_cols=68  Identities=10%  Similarity=0.189  Sum_probs=48.9

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G-~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~  285 (296)
                      +.|.|-+...|+||-|+++.+.|+.+|||+.+.+.--.+ ...+=.|||.-+ + ..++..+++.+.|+..
T Consensus        33 dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h-~~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K-RTKPVLGSIIKSLRND  101 (429)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G-GGHHHHHHHHHHHHHT
T ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e-CCCHHHHHHHHHHHhh
Confidence            467777778999999999999999999999999886544 445667888435 3 2344334444555544

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=81.23  E-value=6.4  Score=35.74  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=40.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  155 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~  155 (296)
                      -|.|.+..+|+||.|+++.+.|+.+|+|..+-.-.-..++ +.-.|+|.-  +|.
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~  252 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGH  252 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESC
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecC
Confidence            4566677789999999999999999999987766666553 245588876  565

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=81.14  E-value=3.2  Score=34.64  Aligned_cols=38  Identities=13%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CcEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022480          216 KRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE  253 (296)
Q Consensus       216 ~~TvleV~-t~DRPGLL~dIt~~La~~gv~I~~AkI~T~  253 (296)
                      +.+.|+|. ..|+||.+++|.+.|++.||+|...-.++.
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~   52 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS   52 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            45777774 689999999999999999999998877654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=80.35  E-value=1.2  Score=36.78  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             CcEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeeeEEEEEe
Q 022480          216 KRSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY  265 (296)
Q Consensus       216 ~~TvleV~t-~DRPGLL~dIt~~La~~gv~I~~AkI~T~---G~ra~D~F~V~~  265 (296)
                      +.+.|.|.+ +|+||.+++|.++|++.|++|........   .+...=.|.|..
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~   68 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK   68 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence            457777776 79999999999999999999998654321   112333477753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.002

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 220 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 252
           L I   ++ G+L ++  IIA+   ++  A+   
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.8
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.57
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.49
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.44
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.23
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.98
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.86
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.8
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.7
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.67
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.57
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.42
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.35
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.26
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.25
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.25
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.24
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.24
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.15
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.12
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.08
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.93
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.74
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.6
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	91.62
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	91.4
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	89.2
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.56
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	85.31
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.45
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.58
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	82.64

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.80  E-value=2.3e-08  Score=74.35  Aligned_cols=65  Identities=14%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+++|++.|+||||++++++++|+++||||.+++..+.++.+.-.+.|.-+        ++.+++|+..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999988765666531        3567788888776

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.57  E-value=2.6e-07  Score=67.85  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ++|+|.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.+.-+ .+  .    ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~--~----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK--Q----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC--C----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC--C----CHHHHHHHHHH
Confidence            5799999999999999999999999999999999999888655666553 22  1    13566677665

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.49  E-value=4.8e-07  Score=66.99  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             CcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          216 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       216 ~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      ++.+|.+.|+||||++++|+++|+++|+||...+..+.|+.-.-.+.++-.     +...++|++.|..
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-----~~~~~~l~~~L~~   67 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----PSNITRVETTLPL   67 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----HHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-----cccHHHHHHHHHH
Confidence            478999999999999999999999999999999999999987777777532     2223455555543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.44  E-value=9.5e-07  Score=64.73  Aligned_cols=47  Identities=13%  Similarity=0.204  Sum_probs=39.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      ++|++.|+||||++++|+.+|+++|+||...+-.+.++.-.=.+.+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~   49 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS   49 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEE
Confidence            68999999999999999999999999999999888776543334443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.23  E-value=1.3e-06  Score=65.56  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=38.7

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC----eeeeEEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VAKDKFHVS  264 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~----ra~D~F~V~  264 (296)
                      ...|+|.|+|||||+++|+++|+++|+||..++-.|+..    ...+.|+++
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            356778899999999999999999999999999988653    345678775

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.98  E-value=2.6e-05  Score=58.03  Aligned_cols=37  Identities=16%  Similarity=0.107  Sum_probs=33.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeC
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  139 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~  139 (296)
                      ..|+|.|+||||++++++++|+++|+||.+.+-.+..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            5788999999999999999999999999998887653

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.86  E-value=5.7e-05  Score=54.56  Aligned_cols=60  Identities=20%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHH
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV  279 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~--G~ra~D~F~V~~~g~~L~~~~~~~L~  279 (296)
                      .+.|-+.-.|+||.|.+|+.+|.++|+||..+++.+.  |+.+.=++.+  ++ ++.++..++|+
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~-~~~~~vl~~I~   64 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQ-DVPDDVRTAIA   64 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SS-CCCHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CC-CccHHHHHHHH
Confidence            4778899999999999999999999999999999764  4445444444  33 45555545553

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.80  E-value=4.8e-05  Score=54.04  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=42.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      +|.|..+||||-|++++++|.+.||||+++.+...++.+.=+|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            5789999999999999999999999999999988888888777773

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=4.5e-05  Score=55.01  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=39.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeee--EEEEEeCCCCCChHHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKD--KFHVSYGGAALNSSLSQVLVNCLR  283 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~-G~ra~D--~F~V~~~g~~L~~~~~~~L~~~L~  283 (296)
                      +-|.|.+.||||+|++|+++|+++|+||......+. .+.+.-  .|++...+..     ++.|.++|+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~-----l~~ll~kL~   65 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGD-----FEKILERVK   65 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSC-----HHHHHHHHH
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCccc-----HHHHHHHHH
Confidence            358899999999999999999999999999987763 334444  4555443322     344555554

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.67  E-value=0.00013  Score=51.77  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      +|.|..+|+||-|++++++|.+.|+||.....+..++..+-.|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47888999999999999999999999999999999987776676644

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.57  E-value=0.00022  Score=50.43  Aligned_cols=46  Identities=7%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEe
Q 022480          104 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  149 (296)
Q Consensus       104 ~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~  149 (296)
                      ++.|+..||||.|++++++|++.|+||.+-.+..+.+..+-.|.+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            6899999999999999999999999999999999888666556553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.42  E-value=0.00041  Score=49.00  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480          219 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  263 (296)
Q Consensus       219 vleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V  263 (296)
                      .+.|...||||.|++|+.+|++.|+||++..+....+.+.=.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            578999999999999999999999999999997666666555544

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=0.00073  Score=48.45  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC
Q 022480          102 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  140 (296)
Q Consensus       102 ~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~  140 (296)
                      +..+.+.-.|+||.+++++++|.++|+||...++.+...
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~   41 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE   41 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCC
Confidence            467888899999999999999999999999999987654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=0.00049  Score=49.68  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  172 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~  172 (296)
                      ..+.++..|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-  +|.    ++.+++|.++|..
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv--~g~----~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV--KGD----DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE--EEC----TTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE--EcC----HHHHHHHHHHHhC
Confidence            578999999999999999999999999999999887764443343333  232    2456666666654

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=0.00029  Score=50.59  Aligned_cols=48  Identities=8%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeE---EEEEEEee
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK---QTKFFITR  150 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~---~d~F~V~~  150 (296)
                      .-+.|.+.||||+|++++.+|+++|.||......+..++.   .-.+.+..
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            3588999999999999999999999999999988876643   23455544

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00046  Score=49.80  Aligned_cols=65  Identities=9%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  285 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~  285 (296)
                      .+|.+...|+||+|.+|+..|++.|+||.+..+........-.+-+.-+|.   +...+++.+.|.+.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~---~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcC---HHHHHHHHHHHhCC
Confidence            578899999999999999999999999999999754443333333332232   12345666666554

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0013  Score=47.66  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             cEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022480          217 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  263 (296)
Q Consensus       217 ~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V  263 (296)
                      ...|.+.-.|+||.|++|+.+|+++|+||......+.++.+.-+-.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            46777788999999999999999999999999999888766555444

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00056  Score=49.10  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=49.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.++..|+||.|++++++|+..|+||.+-.+..+.+.-+-.|.+.-  .|    +++.+++|.++|...
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv--~~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT--VG----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE--ES----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhCC
Confidence            368899999999999999999999999999999877664443444444  23    246777777777663

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00077  Score=48.35  Aligned_cols=66  Identities=11%  Similarity=0.223  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ..+.+...|+||+|++|+..|++.|+||++..+.-......-.|-+.-.|   ++...+++...|.+.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~---~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG---DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC---CHHHHHHHHHHHhCCC
Confidence            36788899999999999999999999999999974333333334443333   2335667777777654

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.12  E-value=0.00056  Score=49.21  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022480          103 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  173 (296)
Q Consensus       103 t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~l~~~~~l~~L~~~L~~~  173 (296)
                      ..+.+...|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-  .|    +++.+++|.++|...
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv--~~----~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVT--NG----PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEE--EE----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEE--EC----CHHHHHHHHHHHhCC
Confidence            468899999999999999999999999999999876653332333332  23    246777777777763

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.08  E-value=0.00075  Score=48.54  Aligned_cols=65  Identities=12%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022480          218 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  286 (296)
Q Consensus       218 TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~-T~G~ra~D~F~V~~~g~~L~~~~~~~L~~~L~~~l  286 (296)
                      ..+.+...|+||.|++|+..|+..|+||++..+. |+..... .+-+.-.|   +++..+++...|.+.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iS-Rmtivv~~---~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLS-RMTLVTNG---PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEE-EEEEEEEE---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeE-EEEEEEEC---CHHHHHHHHHHHhCCc
Confidence            4678889999999999999999999999999997 4433222 23332223   1335667777777654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.00072  Score=50.67  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=53.6

Q ss_pred             CCcEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022480          215 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  287 (296)
Q Consensus       215 ~~~TvleV~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~~l~  287 (296)
                      .+.|.|-+...|+||-|+++...|+++|||+.+.+-...... ..=.|||.-+|+.  ++..+.+.+.|+..+.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~--~~~i~~~l~~L~~~~~   85 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRT--KPVLGSIIKSLRNDIG   85 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGG--HHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCC--hHHHHHHHHHHHHhhC
Confidence            357888888999999999999999999999999988755444 4447888557763  4545566666665443

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0086  Score=43.03  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEE
Q 022480          101 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  143 (296)
Q Consensus       101 ~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~  143 (296)
                      +...+.+.-.|+||.+++|+++|.++|+||.+-...+.+++..
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~   52 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY   52 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE
Confidence            3357788889999999999999999999999999888877543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.60  E-value=0.0062  Score=43.64  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             EEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022480          222 IETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  284 (296)
Q Consensus       222 V~t~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~r-a~D~F~V~~~g~~L~~~~~~~L~~~L~~  284 (296)
                      +...|+||-|+++...|+++|||+.+.+-.-.++. -.=.|||.-+|+. .+. .+++.+.|+.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~-~~~-~~~~l~~L~~   68 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAI-TTD-IKKVIAILET   68 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCS-CHH-HHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCC-cHH-HHHHHHHHHH
Confidence            34569999999999999999999999998755544 4557888767753 433 3444444443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.62  E-value=0.64  Score=32.48  Aligned_cols=49  Identities=12%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCCe-EEEEEEEeecCCCC
Q 022480          105 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  155 (296)
Q Consensus       105 V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~-~~d~F~V~~~~~g~  155 (296)
                      +.+...|+||-|+++-++|+++|+|+.+-.-.-..+. +.-.|+|.-  +|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~--~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA--DSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--SCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ecC
Confidence            3444579999999999999999999987666555542 233488877  465

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.40  E-value=0.23  Score=36.38  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEeCC-eEEEEEEEeecCCCC
Q 022480          100 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGR  155 (296)
Q Consensus       100 ~~~t~V~V~~~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~-~~~d~F~V~~~~~g~  155 (296)
                      .+.|.|.+..+|+||.|+++-..|+++|+|+..-.-.-..+ .+--.|+|.-  +|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~--eg~   68 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--DKR   68 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--CGG
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc--ccC
Confidence            45577788889999999999999999999987655544433 2233488865  564

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.20  E-value=0.27  Score=35.39  Aligned_cols=34  Identities=18%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             CcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022480          216 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  249 (296)
Q Consensus       216 ~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~Ak  249 (296)
                      +.+.+.|.+   .++||++++|..+|++.|+||....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            468888886   4999999999999999999999986

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.56  E-value=1.2  Score=29.89  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=32.9

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          104 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       104 ~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      .|.+.|   +++||+.+++..+|++.|+||.--...+..-..  .|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~I--s~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI--SFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEE--EEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceE--EEEEeH
Confidence            567776   699999999999999999999865443332222  366655

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=85.31  E-value=0.98  Score=32.74  Aligned_cols=48  Identities=8%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEeCCeEEEEEEEee
Q 022480          101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  150 (296)
Q Consensus       101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~I~T~~~~~~d~F~V~~  150 (296)
                      +...|+|.|   +++||+.+++..+|+++|+||.--...+..-.+  .|.|..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~I--sf~V~~   64 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI--SLVVSE   64 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCE--EEEECS
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceE--EEEEeH
Confidence            567889987   799999999999999999999875443322222  366654

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.45  E-value=0.47  Score=32.06  Aligned_cols=45  Identities=7%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022480          219 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  265 (296)
Q Consensus       219 vleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~~  265 (296)
                      .+.+.+   .++||+.+++..+|++.|+||....-.+-  ...=.|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEeH
Confidence            566665   59999999999999999999988764322  2334566743

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.58  E-value=0.52  Score=34.32  Aligned_cols=47  Identities=19%  Similarity=0.177  Sum_probs=36.1

Q ss_pred             CcEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022480          216 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  264 (296)
Q Consensus       216 ~~TvleV~t---~DRPGLL~dIt~~La~~gv~I~~AkI~T~G~ra~D~F~V~  264 (296)
                      +.+.|.|.+   .++||++++|..+|++.||+|....-.+ .+ ..=.|.|.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~-Se-~~Isf~V~   63 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS-SE-TNISLVVS   63 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC-TT-CCEEEEEC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC-Cc-ceEEEEEe
Confidence            368889987   6999999999999999999999875333 22 23357773

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.64  E-value=0.55  Score=33.64  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022480          101 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT  134 (296)
Q Consensus       101 ~~t~V~V~~---~DrpGLLa~i~~vL~~~glnI~~A~  134 (296)
                      +.+.|+|.+   +++||.++++..+|+++|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            567889987   4999999999999999999998764