Citrus Sinensis ID: 022503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL
cccccccccHHHHHHcccccccccccEEEEcccccccccccccEEEEEEEccEEEEEccEEEEcccccccEEEEEEEEcccccEEEEEEcccccccccccccccEEEEEEEcccEEEcccccccccccccccccHHcHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccEEccccHHHHHHHHHHHHHHcccccccccccccccc
cHHHHHHccHHHHHHHcHHHHHccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccccccccHEEEEcccccEEEcccHHccccccccccEEEEcccEccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccc
mltiatsgseaqkrkylpSLAQLTTMASWaltepnhgsdasalSTAATKVEggwilegqkrwignsTFADVLVVMARNTTTKKINAFIVkkdapgltatKIENKIGLRmlqngdilfkkvfvpdedrlpgfnsfqdtniplSVARVMVAWQTIGISIGVYDMCYRYLMERkqfgaplaAFQITQQKLAQMLGNIQAMNLVGWRLCRmcengkmslgqASLGKAWVSARARETVALGREllggngivtdflvgkafcdfepfhtgegsydINNLIAAREitgfasfkptssaqqsrl
mltiatsgseaqkrkYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWilegqkrwignSTFADVLVVMARNtttkkinafivkkdapgltaTKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGfasfkptssaqqsrl
MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL
**********************LTTMASWAL*************TAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFA*************
MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF***********
************KRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASF***********
MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGF**************
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MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query296 2.2.26 [Sep-21-2011]
Q96329436 Acyl-coenzyme A oxidase 4 yes no 0.989 0.672 0.746 1e-132
Q20772409 Probable glutaryl-CoA deh yes no 0.949 0.687 0.381 6e-46
Q2KHZ9438 Glutaryl-CoA dehydrogenas yes no 0.959 0.648 0.372 2e-42
Q54R47420 Glutaryl-CoA dehydrogenas no no 0.959 0.676 0.370 6e-42
Q60759438 Glutaryl-CoA dehydrogenas yes no 0.959 0.648 0.365 3e-41
Q8HXX8438 Glutaryl-CoA dehydrogenas N/A no 0.959 0.648 0.369 5e-41
Q92947438 Glutaryl-CoA dehydrogenas yes no 0.959 0.648 0.372 1e-40
P81140408 Glutaryl-CoA dehydrogenas yes no 0.959 0.696 0.368 4e-39
Q9FS88412 Isovaleryl-CoA dehydrogen N/A no 0.922 0.662 0.307 2e-37
Q9SWG0409 Isovaleryl-CoA dehydrogen no no 0.932 0.674 0.310 6e-36
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1 Back     alignment and function desciption
 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/296 (74%), Positives = 254/296 (85%), Gaps = 3/296 (1%)

Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           MLTIA  GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203

Query: 61  RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
           RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263

Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
           FVPDEDRLPG NSFQDT+  L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323

Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
           Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct: 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383

Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
           GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  RE+TG ASFKP   A +SRL
Sbjct: 384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATRSRL 436
Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1 Back     alignment and function description
>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1 Back     alignment and function description
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2 Back     alignment and function description
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
255582668 440 acyl-CoA dehydrogenase, putative [Ricinu 1.0 0.672 0.760 1e-135
359481157 439 PREDICTED: acyl-coenzyme A oxidase 4, pe 1.0 0.674 0.766 1e-134
359481155 446 PREDICTED: acyl-coenzyme A oxidase 4, pe 1.0 0.663 0.766 1e-134
402715756 437 acyl-CoA oxidase 4 [Prunus persica] 1.0 0.677 0.766 1e-134
356568112 421 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.993 0.698 0.760 1e-132
224087764 436 predicted protein [Populus trichocarpa] 1.0 0.678 0.746 1e-131
356521028 421 PREDICTED: acyl-coenzyme A oxidase 4, pe 0.993 0.698 0.746 1e-131
224139128 437 predicted protein [Populus trichocarpa] 1.0 0.677 0.739 1e-130
15231059 436 acyl-coenzyme A oxidase 4 [Arabidopsis t 0.989 0.672 0.746 1e-130
114794826 449 Chain A, Short Chain Specific Acyl-Coa O 0.989 0.652 0.746 1e-130
>gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/296 (76%), Positives = 259/296 (87%)

Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           MLTIA  GSEAQK+KYLPSLAQL+T+A WALTEP +GSDASAL T A KVEGGWIL+GQK
Sbjct: 145 MLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEYGSDASALKTTARKVEGGWILDGQK 204

Query: 61  RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
           RWIGNSTFADVLVV ARNT+T++IN +IVKKDAPGLTATKIENKIGLRM+QNGDIL K+V
Sbjct: 205 RWIGNSTFADVLVVFARNTSTEQINGYIVKKDAPGLTATKIENKIGLRMVQNGDILLKQV 264

Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
           F+PDEDRLPG NSFQDTN  L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 265 FIPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 324

Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
           QI QQKL QMLGN+QAM LVGWRLC++ E GKM+ G AS+ KAW++++ARET A GRELL
Sbjct: 325 QINQQKLVQMLGNVQAMVLVGWRLCKLYETGKMTSGHASMAKAWITSKARETAATGRELL 384

Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
           GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  RE+TG ASFKP + + +SRL
Sbjct: 385 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPAALSNRSRL 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica] Back     alignment and taxonomy information
>gi|356568112|ref|XP_003552257.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max] Back     alignment and taxonomy information
>gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15231059|ref|NP_190752.1| acyl-coenzyme A oxidase 4 [Arabidopsis thaliana] gi|62286630|sp|Q96329.1|ACOX4_ARATH RecName: Full=Acyl-coenzyme A oxidase 4, peroxisomal; Short=AOX 4; AltName: Full=G6p; AltName: Full=Short-chain acyl-CoA oxidase; Short=AtCX4; Short=AtG6; Short=SAOX gi|114794822|pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa gi|114794823|pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa gi|114794824|pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa gi|114794825|pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa gi|1657621|gb|AAB18129.1| G6p [Arabidopsis thaliana] gi|3068711|gb|AAC14411.1| putative acyl-coA dehydrogenase [Arabidopsis thaliana] gi|5478795|dbj|BAA82478.1| Short-chain acyl CoA oxidase [Arabidopsis thaliana] gi|20453143|gb|AAM19813.1| At3g51840/AtG6 [Arabidopsis thaliana] gi|21593380|gb|AAM65329.1| acyl-coA dehydrogenase [Arabidopsis thaliana] gi|21928035|gb|AAM78046.1| At3g51840/AtG6 [Arabidopsis thaliana] gi|332645330|gb|AEE78851.1| acyl-coenzyme A oxidase 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|114794826|pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 gi|114794827|pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 gi|114794828|pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 gi|114794829|pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 gi|114794830|pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 gi|114794831|pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
TAIR|locus:2074403436 ACX4 "acyl-CoA oxidase 4" [Ara 0.989 0.672 0.746 2e-118
DICTYBASE|DDB_G0274585430 DDB_G0274585 "putative acyl-Co 0.993 0.683 0.431 1.9e-60
UNIPROTKB|Q4KKG4393 gcdH "Glutaryl-CoA dehydrogena 0.956 0.720 0.384 1.6e-45
WB|WBGene00010052409 F54D5.7 [Caenorhabditis elegan 0.935 0.677 0.382 1.3e-43
DICTYBASE|DDB_G0283411420 gcdh "glutaryl-CoA dehydrogena 0.959 0.676 0.370 4.2e-40
UNIPROTKB|Q47V61394 gcdH "Glutaryl-CoA dehydrogena 0.962 0.723 0.363 8.7e-40
TIGR_CMR|CPS_4667394 CPS_4667 "glutaryl-CoA dehydro 0.962 0.723 0.363 8.7e-40
TIGR_CMR|SPO_1955436 SPO_1955 "glutaryl-CoA dehydro 0.959 0.651 0.369 2.3e-39
UNIPROTKB|Q2KHZ9438 GCDH "Glutaryl-CoA dehydrogena 0.959 0.648 0.372 2.9e-39
UNIPROTKB|P95208395 fadE7 "Glutaryl-CoA dehydrogen 0.959 0.718 0.335 1.6e-38
TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 221/296 (74%), Positives = 254/296 (85%)

Query:     1 MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
             MLTIA  GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct:   144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203

Query:    61 RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
             RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct:   204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263

Query:   121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
             FVPDEDRLPG NSFQDT+  L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct:   264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323

Query:   181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
             Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct:   324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383

Query:   241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
             GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  RE+TG ASFKP   A +SRL
Sbjct:   384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATRSRL 436
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IMP;IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA;IMP;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0046459 "short-chain fatty acid metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0044265 "cellular macromolecule catabolic process" evidence=RCA
DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283411 gcdh "glutaryl-CoA dehydrogenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1955 SPO_1955 "glutaryl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHZ9 GCDH "Glutaryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P95208 fadE7 "Glutaryl-CoA dehydrogenase" [Mycobacterium tuberculosis H37Rv (taxid:83332)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96329ACOX4_ARATH1, ., 3, ., 3, ., 60.74660.98980.6720yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 0.0
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 1e-137
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 3e-68
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 3e-68
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 6e-61
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 4e-48
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 7e-43
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 1e-40
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 4e-39
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 3e-38
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 1e-33
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 5e-32
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 4e-27
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 3e-25
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 4e-24
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 1e-22
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 2e-22
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 8e-21
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 1e-16
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 5e-16
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 2e-14
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 4e-14
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 2e-12
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 7e-11
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 5e-09
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 8e-09
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 2e-08
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 3e-08
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 1e-07
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 4e-07
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 7e-07
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 3e-06
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 6e-06
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 6e-05
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score =  542 bits (1398), Expect = 0.0
 Identities = 230/296 (77%), Positives = 259/296 (87%), Gaps = 1/296 (0%)

Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           MLTIA  GSEAQK+KYLPSLAQL T+A WALTEP++GSDAS+L+T ATKVEGGWIL GQK
Sbjct: 118 MLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQK 177

Query: 61  RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
           RWIGNSTFADVLV+ ARNTTT +IN FIVKK APGL ATKIENKIGLRM+QNGDI+ K V
Sbjct: 178 RWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDV 237

Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
           FVPDEDRLPG NSFQDTN  L+V+RVMVAWQ IGIS+GVYDMC+RYL ERKQFGAPLAAF
Sbjct: 238 FVPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAF 297

Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
           QI Q+KL +MLGNIQAM LVGWRLC++ E+GKM+ G ASLGKAW++ +ARETVALGRELL
Sbjct: 298 QINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELL 357

Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
           GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  REITG ASFKP +S  +SRL
Sbjct: 358 GGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASFKPAAST-RSRL 412

Length = 412
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 296
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.96
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 99.96
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.93
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.72
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.72
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.67
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.65
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 99.15
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 97.35
PTZ00457520 acyl-CoA dehydrogenase; Provisional 92.49
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 90.52
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5e-65  Score=426.29  Aligned_cols=267  Identities=34%  Similarity=0.486  Sum_probs=257.7

Q ss_pred             hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503            2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT   81 (296)
Q Consensus         2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~   81 (296)
                      .+|..|||++||+.|+|. ..|+.+++||+|||++|||...+.|+|++++|.|+|||+|.||||+..|++++|++.+++.
T Consensus       128 ~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~  206 (398)
T KOG0139|consen  128 PLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPS  206 (398)
T ss_pred             hHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChh
Confidence            578999999999977777 4577799999999999999999999999999999999999999999999999999998643


Q ss_pred             ---CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCC-CChHHhhhhhhHHHHHHHHHHHHHHH
Q 022503           82 ---KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGF-NSFQDTNIPLSVARVMVAWQTIGISI  157 (296)
Q Consensus        82 ---~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~~G~~~  157 (296)
                         +++++|+||++.||+++....+++|||+++++.++|+||+||++++||.+ .|+++..+.++.+|+..+++.+|.++
T Consensus       207 ~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ  286 (398)
T KOG0139|consen  207 KGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQ  286 (398)
T ss_pred             hccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhH
Confidence               78999999999999999999999999999999999999999999999987 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 022503          158 GVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGR  237 (296)
Q Consensus       158 ~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~  237 (296)
                      +|+|.++.|+++|.+||+++.++|.+|++|+++.+++|++|+++|++++.-|.+.|...+++|+|+++++.+..+++.|+
T Consensus       287 ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCi  366 (398)
T KOG0139|consen  287 GCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCI  366 (398)
T ss_pred             hHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCcCcChHHHHhhhcCCcccccchHH
Q 022503          238 ELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYD  269 (296)
Q Consensus       238 ~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~  269 (296)
                      |+.||.||++++|.+|+|||++...+.+|+++
T Consensus       367 q~lGG~Gyt~d~paek~yRDarI~~IyeGtsn  398 (398)
T KOG0139|consen  367 QWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN  398 (398)
T ss_pred             HHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence            99999999999999999999999999999863

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-133
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-133
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 2e-51
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 2e-51
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 2e-51
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 9e-42
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 1e-41
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-41
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 2e-41
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 4e-38
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 2e-35
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 9e-34
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 1e-33
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 4e-33
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 6e-33
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 9e-33
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 6e-32
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 3e-30
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 8e-30
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 1e-29
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 2e-29
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-29
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 3e-29
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 4e-29
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-28
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 2e-28
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 1e-27
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 1e-27
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 1e-25
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 1e-25
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 2e-25
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 2e-24
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 4e-22
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 6e-16
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 1e-11
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 3e-10
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 2e-09
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 2e-09
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 2e-06
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-06
1is2_A 661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 2e-04
3m9v_A439 X-Ray Structure Of A Kijd3 In Complex With Dtdp Len 2e-04
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure 
Iteration: 1

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/296 (74%), Positives = 254/296 (85%), Gaps = 3/296 (1%)
Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           MLTIA  GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203
Query: 61  RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
           RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263
Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
           FVPDEDRLPG NSFQDT+  L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323
Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
           Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct: 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383
Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQQSRL 296
           GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  RE+TG ASFKP   A +SRL
Sbjct: 384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---ATRSRL 436
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 1e-139
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-132
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-131
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-131
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-127
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-125
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 4e-68
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 6e-68
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 8e-68
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 9e-68
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 2e-67
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 2e-67
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-67
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 9e-67
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 9e-67
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 4e-66
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 8e-66
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 4e-65
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 5e-65
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 2e-63
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-62
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 2e-62
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 5e-56
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 2e-55
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-54
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 2e-54
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 7e-49
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 8e-49
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 3e-46
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 7e-46
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 4e-45
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 1e-24
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 3e-24
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 2e-23
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 4e-21
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 3e-18
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 3e-18
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 3e-16
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 2e-12
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
 Score =  398 bits (1024), Expect = e-139
 Identities = 217/292 (74%), Positives = 252/292 (86%)

Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           MLTIA  GSEAQK KYLPSLAQL T+A WALTEP++GSDAS L T ATKVEGGW + GQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203

Query: 61  RWIGNSTFADVLVVMARNTTTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKV 120
           RWIGNSTFAD+L++ ARNTTT +IN FIVKKDAPGL ATKI NKIGLRM+QNGDIL + V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263

Query: 121 FVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAF 180
           FVPDEDRLPG NSFQDT+  L+V+RVMVAWQ IGIS+G+YDMC+RYL ERKQFGAPLAAF
Sbjct: 264 FVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAF 323

Query: 181 QITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELL 240
           Q+ QQKL QMLGN+QAM L+GWRLC++ E G+M+ GQASLGKAW+S++ARET +LGRELL
Sbjct: 324 QLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELL 383

Query: 241 GGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTSSAQ 292
           GGNGI+ DFLV KAFCD EP +T EG+YDIN L+  RE+TG ASFKP + ++
Sbjct: 384 GGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPATRSR 435
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.97
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 95.31
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 90.37
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 81.89
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-60  Score=431.27  Aligned_cols=288  Identities=75%  Similarity=1.209  Sum_probs=274.6

Q ss_pred             hhhhhcCCHHHHHHHhHhhhccccceeEEecCCCCCCCcCCCeeEEEEECCEEEEEeEEEeecCCCCCCEEEEEEEeCCC
Q 022503            2 LTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQKRWIGNSTFADVLVVMARNTTT   81 (296)
Q Consensus         2 ~~l~~~g~~~q~~~~l~~i~~g~~~~~~a~te~~~gs~~~~~~~~a~~~~~g~~l~G~K~~vt~~~~a~~~lv~a~~~~~   81 (296)
                      .+|..+|+++||++|||++++|+.++++++|||+.|||...+.|+|++++|||+|||.|.|+||+..||+++|+++++++
T Consensus       145 ~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~  224 (436)
T 2ix5_A          145 LTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTT  224 (436)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEEETTT
T ss_pred             HHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEEEECCC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999998755


Q ss_pred             CCeEEEEEeCCCCCeEEeecccccccccccccceEeeeeeeCCCCCCCCCCChHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 022503           82 KKINAFIVKKDAPGLTATKIENKIGLRMLQNGDILFKKVFVPDEDRLPGFNSFQDTNIPLSVARVMVAWQTIGISIGVYD  161 (296)
Q Consensus        82 ~~~~~flv~~~~~Gv~~~~~~~~~g~~~~~~~~~~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~~G~~~~~l~  161 (296)
                      +++++|+||.+.|||++.+.|+++|++++++++++|+||+||++++++..+++......+...|+.+++.++|+++++++
T Consensus       225 ~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~  304 (436)
T 2ix5_A          225 NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYD  304 (436)
T ss_dssp             SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999887788888888999999999999999999999


Q ss_pred             HHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022503          162 MCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQASLGKAWVSARARETVALGRELLG  241 (296)
Q Consensus       162 ~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G  241 (296)
                      .+++|+++|++||+|++++|.+|++|++|.++++++|++++++++.+|.+.+....++++|+++++.+.++++.++|+||
T Consensus       305 ~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g~~~~~~as~aK~~a~e~a~~v~~~a~q~~G  384 (436)
T 2ix5_A          305 MCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLG  384 (436)
T ss_dssp             HHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987766778999999999999999999999999


Q ss_pred             CCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCcCCCCCC
Q 022503          242 GNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFKPTS  289 (296)
Q Consensus       242 ~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~  289 (296)
                      |.||+++++++|+|||++...+++|++++++..+++.++|+|++.|..
T Consensus       385 g~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llgl~~~~~~~  432 (436)
T 2ix5_A          385 GNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPAT  432 (436)
T ss_dssp             GGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCSCC-
T ss_pred             ccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhCCccccchh
Confidence            999999999999999999999999999999999999999999887443
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 296
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 6e-33
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 8e-25
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 3e-24
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 4e-24
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 3e-22
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 1e-20
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 3e-18
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 5e-17
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-16
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 2e-16
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 2e-16
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 2e-16
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 6e-16
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 1e-15
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-15
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 2e-14
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 8e-14
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 2e-12
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 4e-12
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 2e-11
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 5e-11
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 5e-11
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 2e-09
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 4e-08
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 7e-08
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 6e-33
 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 1   MLTIATSGSEAQKRKYLPSLAQLTTMASWALTEPNHGSDASALSTAATKVEGGWILEGQK 60
           +  +  +G+EAQK KYLP L     + + A++EPN GSD  ++   A K    +IL G K
Sbjct: 100 INQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNK 159

Query: 61  RWIGNSTFADVLVVMARNT-----TTKKINAFIVKKDAPGLTATKIENKIGLRMLQNGDI 115
            WI N   ADVL+V A+        ++ I AFIV+K  PG + +K  +K+G+R     ++
Sbjct: 160 FWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCEL 219

Query: 116 LFKKVFVPDEDRL 128
           +F+   +P  + L
Sbjct: 220 IFEDCKIPAANIL 232
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.98
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.97
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 99.97
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 99.97
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 99.97
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 99.97
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.97
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.97
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.96
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.96
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.96
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.96
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 99.96
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.96
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.96
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.96
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.96
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.96
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.95
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.95
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.95
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.95
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.93
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.91
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.9
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 97.8
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=209.18  Aligned_cols=148  Identities=34%  Similarity=0.452  Sum_probs=144.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Q 022503          139 IPLSVARVMVAWQTIGISIGVYDMCYRYLMERKQFGAPLAAFQITQQKLAQMLGNIQAMNLVGWRLCRMCENGKMSLGQA  218 (296)
Q Consensus       139 ~~~~~~r~~~aa~~~G~~~~~l~~~~~~~~~r~~~~~~~~~~~~~q~~l~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~  218 (296)
                      ..++.+|+.+++.++|.++.+++.+++|+++|.+||+||.++|.+|++|+++.+++++++.+++++++..|.+.+....+
T Consensus         6 ~~Ln~~R~~iaa~~lG~a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~~~~~r~~~~~aa~~~d~~~~~~~~~   85 (154)
T d1siqa1           6 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMV   85 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChHHHHhhhcCCcccccchHHHHHHHHHHHHhcCcCCC
Q 022503          219 SLGKAWVSARARETVALGRELLGGNGIVTDFLVGKAFCDFEPFHTGEGSYDINNLIAAREITGFASFK  286 (296)
Q Consensus       219 ~~~K~~a~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~~~~~~l~~~~~~  286 (296)
                      +++|+++++.+.++++.++|++||.||++++|++|+|||++...+++|++++++..++|.++|+++|.
T Consensus        86 ~~aK~~a~~~a~~~~~~a~qi~Gg~G~~~~~~l~r~~Rd~r~~~i~eGt~ev~~~~iar~llG~~af~  153 (154)
T d1siqa1          86 SLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFT  153 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCCSC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhHHHhhcCcHHHHHHHHHHHHhCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999885
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure