Citrus Sinensis ID: 022524

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msdsvslidppptesrdaARIADVKAWLASQFEAsakevpafeytsrsVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGlaqeslpsnvVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGqleddvapceAQMENWKTNLAVMASKERQYLQQYNNYKALLNrvgytpeisHGVLVEMAEHRKELEKKTKPILDTLrsyqdlppdKALAALAIEDKKRQYAAAEKYLEDVLHSALATND
Flexible Loop (DISEMBL)
msdsvslidppptesrdaaRIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRktaveekrakvqkeskilldytRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILdtlrsyqdlppDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND
Low Complexity Region (SEG)
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKalaalaIEDKKRQYAAAEKYLEDVLHSALATND
Disordered region (IsUnstruct)
********************IADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVE****KVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMA***************************ALAALAIED**RQYAAAEKYLEDVL********
Disordered Region (DISOPRED)
************************KAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFR***************************************NVANLLNIRDTELSSFLVAMGD****************************AIARLTYLK************************************************************************************************************KYLE***********
Disordered Region (DISEMBL)
****************DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND
Disordered Region (DISPRO)
*****************AARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9R0A8	278	HAUS augmin-like complex	yes	no	0.874	0.928	0.272	5e-17
Q2TBK4	278	HAUS augmin-like complex	yes	no	0.881	0.935	0.269	8e-17
Q8BHX1	278	HAUS augmin-like complex	yes	no	0.861	0.913	0.283	4e-16
Q96CS2	278	HAUS augmin-like complex	yes	no	0.877	0.931	0.271	4e-16

>sp|Q9R0A8|HAUS1_RAT HAUS augmin-like complex subunit 1 OS=Rattus norvegicus GN=Haus1 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 3/261 (1%)

Query: 24  VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
           V  WL   F      +P +E  +R+   LY+L+  ++ + +  N+V  D RQKA+EY S+
Sbjct: 11  VAEWLKKIF--GDHPIPQYEMNARTTEILYHLSERNRVRDRDVNLVIEDLRQKASEYESE 68

Query: 84  AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
           A R+ + L E+V  +  +L +        L + A  L I+DT L+SF+ A+ D++     
Sbjct: 69  AKRLEDFLMESVNFSPANLSNTGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTSDLFR 128

Query: 143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASK 202
            + K  +++ E   L       +     L+  L + +  ++   A+ E    N+  + +K
Sbjct: 129 TKSKSEEIKLELGKLEKNLTATLVLEKCLREDLKKADVHLSAERAKAEGRLQNMDFLKAK 188

Query: 203 ERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDK 262
             ++       +  L+  G    +SH  LV +++   EL+++T P+   L SY DL P+ 
Sbjct: 189 AAEFRFGIRAAEEQLSSRGMDASLSHRSLVALSDKLSELKQQTIPLKKKLESYLDLMPNP 248

Query: 263 ALAALAIEDKKRQYAAAEKYL 283
           +LA + IE+ KR+  A E  L
Sbjct: 249 SLAQVKIEEAKRELDAIEAEL 269

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.
Rattus norvegicus (taxid: 10116)

>sp|Q2TBK4|HAUS1_BOVIN HAUS augmin-like complex subunit 1 OS=Bos taurus GN=HAUS1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 3/263 (1%)

Query: 22  ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
           A V AWL   F      +P +E  + +   LYNL+  ++ + +   +V  D +QKA EY 
Sbjct: 9   AQVAAWLKKIF--GDHPIPQYEVNAWTTEILYNLSERNRIRDRDVYLVTEDLKQKAKEYE 66

Query: 82  SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
           S+A  ++++L E+V  +  SL S        L + A +L  +DT L+SF+ A+ D++   
Sbjct: 67  SEAKHLQDLLMESVNFSPASLSSTGSRYLNALVDSAVVLETKDTSLASFIPAVNDLTSDL 126

Query: 141 TAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMA 200
              + K  +++ E   L       +     L+  L + E  +    A++++   N+  + 
Sbjct: 127 FRTKSKNEEIKLELAKLEKNLTATLVLEKCLQEDLKKAELHLCTERARVDSRLQNMDFLK 186

Query: 201 SKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPP 260
           +K  ++       +  L+  G    +SH  LV ++E   EL+++T P+   L SY DL P
Sbjct: 187 AKSEEFRSGIRTAEEQLSARGMDASLSHQSLVALSEKLAELKRQTMPLKKKLESYLDLMP 246

Query: 261 DKALAALAIEDKKRQYAAAEKYL 283
           + +LA + IE+ KR+    E  L
Sbjct: 247 NPSLAQVKIEEAKRELDTIEAEL 269

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Bos taurus (taxid: 9913)

>sp|Q8BHX1|HAUS1_MOUSE HAUS augmin-like complex subunit 1 OS=Mus musculus GN=Haus1 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 133/265 (50%), Gaps = 11/265 (4%)

Query: 24  VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
           V  WL   F      +P +E  SR+   LY+L+  ++ + +  ++V  D +QKA+EY S+
Sbjct: 11  VAEWLKKVF--GDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVIEDLKQKASEYESE 68

Query: 84  AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDIS---LR 139
           A R+ + L E+V  +  +L  +       L + A  L I+DT L+SF+ A+ D++    R
Sbjct: 69  AKRLEDFLMESVNFSPANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTSDLFR 128

Query: 140 -KTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAV 198
            K+  EE + ++ K  K L       +     L+  L + E  ++  +A++++   N+  
Sbjct: 129 TKSKSEEMKLELGKLEKNL----TATLVLEKCLREDLKKAELQLSAEKAKVDSRLQNMDF 184

Query: 199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDL 258
           + +K  ++       +  L+  G    +SH  L  ++E   EL+++T P+   L SY DL
Sbjct: 185 LKAKAAEFRFGIKAAEEQLSARGMDASLSHRSLAALSEKLSELKEQTIPLKKKLESYLDL 244

Query: 259 PPDKALAALAIEDKKRQYAAAEKYL 283
            P  +LA L IE+ KR+  A E  L
Sbjct: 245 MPSPSLAQLKIEEAKRELDAIEAEL 269

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Mus musculus (taxid: 10090)

>sp|Q96CS2|HAUS1_HUMAN HAUS augmin-like complex subunit 1 OS=Homo sapiens GN=HAUS1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 21/280 (7%)

Query: 12  PTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAA 71
           P E R+      V AWL   F      +P +E   R+   L++L+  ++ + +   +V  
Sbjct: 3   PQEERET----QVAAWLKKIF--GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIE 56

Query: 72  DFRQKAAEYRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFL 130
           D +QKA+EY S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+
Sbjct: 57  DLKQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFI 116

Query: 131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---- 186
            A+ D++   + +   ++K + E KI L+   K +     L++    L++DV   E    
Sbjct: 117 PAVNDLT---SDLFRTKSKSE-EIKIELEKLEKNLTATLVLEKC---LQEDVKKAELHLS 169

Query: 187 ---AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEK 243
              A+++N + N+  + +K  ++       +  L+  G    +SH  LV ++E    L++
Sbjct: 170 TERAKVDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQ 229

Query: 244 KTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL 283
           +T P+   L SY DL P+ +LA + IE+ KR+  + E  L
Sbjct: 230 QTIPLKKKLESYLDLMPNPSLAQVKIEEAKRELDSIEAEL 269

Contributes to mitotic spindle assembly, maintenance of centrosome integrity and completion of cytokinesis as part of the HAUS augmin-like complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
255576552	304	Coiled-coil domain-containing protein, p	1.0	0.970	0.848	1e-146
359477675	298	PREDICTED: HAUS augmin-like complex subu	1.0	0.989	0.855	1e-146
224086928	290	predicted protein [Populus trichocarpa]	0.945	0.962	0.888	1e-142
359487003	298	PREDICTED: HAUS augmin-like complex subu	1.0	0.989	0.825	1e-140
449437820	297	PREDICTED: HAUS augmin-like complex subu	0.969	0.962	0.810	1e-133
449494690	297	PREDICTED: HAUS augmin-like complex subu	0.969	0.962	0.807	1e-133
449506670	297	PREDICTED: HAUS augmin-like complex subu	0.969	0.962	0.804	1e-132
18405674	298	uncharacterized protein [Arabidopsis tha	0.945	0.936	0.820	1e-130
297824081	298	hypothetical protein ARALYDRAFT_903446 [	0.945	0.936	0.817	1e-130
79324879	299	uncharacterized protein [Arabidopsis tha	0.945	0.933	0.817	1e-129

>gi|255576552|ref|XP_002529167.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223531391|gb|EEF33226.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/304 (84%), Positives = 276/304 (90%), Gaps = 9/304 (2%)

Query: 1   MSDSVSLID---------PPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAH 51
           MSD +S +D            +   DA+RI++VKAWL SQFEA+ K+VP FEYT RS++H
Sbjct: 1   MSDIISKVDNEQKTSSSNSSSSGGSDASRISEVKAWLTSQFEAAGKDVPEFEYTQRSISH 60

Query: 52  LYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQV 111
           LYNLATLSQ+KT AANI+A DFRQKA EYR+QAARIREILENVGLAQESLPSNVV SAQV
Sbjct: 61  LYNLATLSQSKTNAANILANDFRQKATEYRAQAARIREILENVGLAQESLPSNVVGSAQV 120

Query: 112 LANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYL 171
           LANVANLLNIRDTELSSFLVAMGDISLRKT VEEKRAK QK+SKILLDYTRKAIARLTYL
Sbjct: 121 LANVANLLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKDSKILLDYTRKAIARLTYL 180

Query: 172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVL 231
           KRTL QLEDDVAPCEAQMENWKTNLAVMASKERQYLQQY+NYKALLNRVGYTPEISHGVL
Sbjct: 181 KRTLAQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYSNYKALLNRVGYTPEISHGVL 240

Query: 232 VEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 291
           VEM+EHRKELEKKTKPI+DTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL
Sbjct: 241 VEMSEHRKELEKKTKPIMDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 300

Query: 292 ATND 295
           AT+D
Sbjct: 301 ATSD 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477675|ref|XP_002285380.2| PREDICTED: HAUS augmin-like complex subunit 1-like [Vitis vinifera] gi|147795301|emb|CAN69456.1| hypothetical protein VITISV_036572 [Vitis vinifera] gi|296083695|emb|CBI23684.3| unnamed protein product [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/298 (85%), Positives = 276/298 (92%), Gaps = 3/298 (1%)

Query: 1   MSDSVSLIDPPPTESR---DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLAT 57
           MSD +S  DP   ES+   D+ RI+DVKAWLASQF+A+ K+VP FEYT R++AHL+NL+T
Sbjct: 1   MSDIISGSDPSVIESKSNFDSGRISDVKAWLASQFDAAGKDVPDFEYTPRTIAHLHNLST 60

Query: 58  LSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVAN 117
           LSQAKT+AA IVA DFRQKAAEYR QAAR+REILENVGLAQE LPSNVV+SAQ LANVAN
Sbjct: 61  LSQAKTQAAGIVATDFRQKAAEYRCQAARVREILENVGLAQEGLPSNVVASAQCLANVAN 120

Query: 118 LLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177
           LLN RDTELSSFLVAMGD+SLRKT VEEKRAKVQKESKILLDYTRKAIARLTYLKRTL Q
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQ 180

Query: 178 LEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEH 237
           LEDDVAPCEAQMENWKTNLA+M SKERQYLQQY+NYKALLNRVGYTPEISHGVLVEMAEH
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMVSKERQYLQQYSNYKALLNRVGYTPEISHGVLVEMAEH 240

Query: 238 RKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           RK+LEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK+LEDVLHSALAT++
Sbjct: 241 RKDLEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKHLEDVLHSALATSE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086928|ref|XP_002308008.1| predicted protein [Populus trichocarpa] gi|222853984|gb|EEE91531.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/279 (88%), Positives = 262/279 (93%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DA RIA+VKAWL SQF+A+ K+VP FEYT RS+AHLYNLA  SQAKT+AANIVA DFRQK
Sbjct: 12  DAGRIAEVKAWLTSQFDAAGKDVPEFEYTPRSIAHLYNLAAASQAKTQAANIVANDFRQK 71

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A EYR+QAARIREILENVGLAQESLPSNVVSSAQVLANVAN LNIRDTELSSFLVAMGD+
Sbjct: 72  AVEYRAQAARIREILENVGLAQESLPSNVVSSAQVLANVANFLNIRDTELSSFLVAMGDL 131

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAKVQKESKILLDYTRKAIARLTYLKRTL QLEDDV PCEAQMENWKTNL
Sbjct: 132 SLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQLEDDVPPCEAQMENWKTNL 191

Query: 197 AVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256
           AVMASKERQYLQQY+NYKALLNRVGYT +ISHG+LVEMAEHR++LEKKTKPI+DTLRSYQ
Sbjct: 192 AVMASKERQYLQQYSNYKALLNRVGYTQDISHGMLVEMAEHRQDLEKKTKPIMDTLRSYQ 251

Query: 257 DLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           DLPPDKALA LAIEDKKRQYAAAEKYLEDVL SALAT D
Sbjct: 252 DLPPDKALATLAIEDKKRQYAAAEKYLEDVLQSALATTD 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487003|ref|XP_002264816.2| PREDICTED: HAUS augmin-like complex subunit 1-like [Vitis vinifera] gi|296084427|emb|CBI24986.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/298 (82%), Positives = 270/298 (90%), Gaps = 3/298 (1%)

Query: 1   MSDSVSLIDPPPTE---SRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLAT 57
           MSD++S  DP   E   + D+ RI+DVKAWLASQ++A+ K+VP FEYT R++  L+NL+T
Sbjct: 1   MSDNISGSDPSVIEIESNFDSGRISDVKAWLASQYDAAGKDVPDFEYTPRTIGRLHNLST 60

Query: 58  LSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVAN 117
           LSQAKT+AA I+A DFRQKAAEYR QAAR+REILENVGL QE LPSNVV+SAQ LANVAN
Sbjct: 61  LSQAKTQAAGILATDFRQKAAEYRCQAARVREILENVGLPQEGLPSNVVASAQCLANVAN 120

Query: 118 LLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQ 177
           LLN RDTELSSFLVAMGD+SLRK+ VEEKRAKVQKESKILLDYTRKAIAR+TYLKR LGQ
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKSEVEEKRAKVQKESKILLDYTRKAIARMTYLKRILGQ 180

Query: 178 LEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEH 237
           LEDDVAPCEAQMENWKTNLA+MASKERQYLQQY NYKALLNRVGYTPEISHGVLVEMAEH
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMASKERQYLQQYRNYKALLNRVGYTPEISHGVLVEMAEH 240

Query: 238 RKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           RK+LEKKTKPILDTLRSYQDLPPDKALAALAIEDKK QYAAAEK LEDVL SALAT++
Sbjct: 241 RKDLEKKTKPILDTLRSYQDLPPDKALAALAIEDKKMQYAAAEKRLEDVLQSALATSE 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437820|ref|XP_004136688.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/291 (81%), Positives = 262/291 (90%), Gaps = 5/291 (1%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           DS S +   PT     +RIA+VK WL S+F  + KEVP FEYT  SV+HL+NL  LSQAK
Sbjct: 10  DSDSKLGSDPT-----SRIAEVKEWLGSEFGRAGKEVPDFEYTPFSVSHLHNLCNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+QAARIREILE+VG+AQE+L SNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQAARIREILESVGMAQENLSSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGDISLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDISLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELE 242
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYKA+LNRVGY+P+ISHG+LVEMAEHRKELE
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYKAMLNRVGYSPDISHGILVEMAEHRKELE 244

Query: 243 KKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALAT 293
           KKTKP+LDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL T
Sbjct: 245 KKTKPMLDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALTT 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494690|ref|XP_004159620.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/291 (80%), Positives = 261/291 (89%), Gaps = 5/291 (1%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           DS S +   PT     +RIA+VK WL S+F  + KEVP FEYT  SV+HL+NL  LSQAK
Sbjct: 10  DSDSKMGSDPT-----SRIAEVKEWLGSEFGRAGKEVPDFEYTPFSVSHLHNLCNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+Q ARIREILE+VG+AQE+LPSNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQEARIREILESVGMAQENLPSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGD SLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDFSLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELE 242
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYKA+LNRVGY+P+ISHG+LVEMAEHRKELE
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYKAMLNRVGYSPDISHGILVEMAEHRKELE 244

Query: 243 KKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALAT 293
           KKTKP+LDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL T
Sbjct: 245 KKTKPMLDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALTT 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506670|ref|XP_004162814.1| PREDICTED: HAUS augmin-like complex subunit 1-like [Cucumis sativus]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/291 (80%), Positives = 262/291 (90%), Gaps = 5/291 (1%)

Query: 3   DSVSLIDPPPTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAK 62
           D+ S +   PT     +RIA+VK WL S+F  + KE P FEYT  SV+HL+NL+ LSQAK
Sbjct: 10  DADSKLGSDPT-----SRIAEVKEWLGSEFGRAGKEAPDFEYTPFSVSHLHNLSNLSQAK 64

Query: 63  TKAANIVAADFRQKAAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIR 122
           T+AA I+A DFR KAAEYR+QAARIREILE+VG+AQE+L SNVVSSAQVLANVANLLNIR
Sbjct: 65  TRAAEILAKDFRLKAAEYRAQAARIREILESVGMAQENLSSNVVSSAQVLANVANLLNIR 124

Query: 123 DTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV 182
           DTELSSFLVAMGDISLRK +VEEKRAKV+K+SK+LLD+TRKAIARLTYLKRTL QLEDDV
Sbjct: 125 DTELSSFLVAMGDISLRKISVEEKRAKVEKDSKVLLDHTRKAIARLTYLKRTLAQLEDDV 184

Query: 183 APCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELE 242
           APCEAQM+NWKTNLAVMA+KERQY+QQ  NYKA+LNRVGY+P+ISHG+LVEMAEHRKELE
Sbjct: 185 APCEAQMDNWKTNLAVMAAKERQYMQQCANYKAMLNRVGYSPDISHGILVEMAEHRKELE 244

Query: 243 KKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALAT 293
           KKTKP+LDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL T
Sbjct: 245 KKTKPMLDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALTT 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405674|ref|NP_565949.1| uncharacterized protein [Arabidopsis thaliana] gi|19715589|gb|AAL91618.1| At2g41350/F13H10.10 [Arabidopsis thaliana] gi|20197422|gb|AAC78538.2| expressed protein [Arabidopsis thaliana] gi|21537039|gb|AAM61380.1| unknown [Arabidopsis thaliana] gi|23506005|gb|AAN28862.1| At2g41350/F13H10.10 [Arabidopsis thaliana] gi|330254869|gb|AEC09963.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 248/279 (88%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256
            VMA KE QY+QQY  Y+ LLNRVGYTP+ISH  LVEMAEHRKEL+K TKP+LDTLRSYQ
Sbjct: 199 EVMAVKEEQYIQQYKKYEMLLNRVGYTPKISHRELVEMAEHRKELDKMTKPVLDTLRSYQ 258

Query: 257 DLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           DLPPDKALAALAIEDKKRQ+ AAEKYLE+VL SAL TND
Sbjct: 259 DLPPDKALAALAIEDKKRQFTAAEKYLEEVLQSALETND 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824081|ref|XP_002879923.1| hypothetical protein ARALYDRAFT_903446 [Arabidopsis lyrata subsp. lyrata] gi|297325762|gb|EFH56182.1| hypothetical protein ARALYDRAFT_903446 [Arabidopsis lyrata subsp. lyrata]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/279 (81%), Positives = 250/279 (89%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA+ KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAAGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ 256
            VMA KE QY+QQY  Y+ LLNRVGYTP+ISH  LVEMAEHRKEL+K TKP+LDTLRSYQ
Sbjct: 199 EVMAVKEEQYIQQYKKYEMLLNRVGYTPKISHRELVEMAEHRKELDKMTKPVLDTLRSYQ 258

Query: 257 DLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           DLPPDKALAALAIEDKKRQ+AA+EKYLE+VL SAL TN+
Sbjct: 259 DLPPDKALAALAIEDKKRQFAASEKYLEEVLQSALETNN 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324879|ref|NP_001031524.1| uncharacterized protein [Arabidopsis thaliana] gi|330254870|gb|AEC09964.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/280 (81%), Positives = 248/280 (88%), Gaps = 1/280 (0%)

Query: 17  DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
           DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct: 19  DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query: 77  AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
           A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct: 79  ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query: 137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
           SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct: 139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query: 197 AVMASKERQYLQQYNNY-KALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255
            VMA KE QY+QQY  Y + LLNRVGYTP+ISH  LVEMAEHRKEL+K TKP+LDTLRSY
Sbjct: 199 EVMAVKEEQYIQQYKKYEQMLLNRVGYTPKISHRELVEMAEHRKELDKMTKPVLDTLRSY 258

Query: 256 QDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSALATND 295
           QDLPPDKALAALAIEDKKRQ+ AAEKYLE+VL SAL TND
Sbjct: 259 QDLPPDKALAALAIEDKKRQFTAAEKYLEEVLQSALETND 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2040247	299	AUG1 "AT2G41350" [Arabidopsis	0.945	0.933	0.796	8.4e-113
UNIPROTKB|E2RPA4	278	HAUS1 "Uncharacterized protein	0.877	0.931	0.265	1.1e-21
UNIPROTKB|Q2TBK4	278	HAUS1 "HAUS augmin-like comple	0.877	0.931	0.265	1.9e-21
UNIPROTKB|F1RPT0	278	HAUS1 "Uncharacterized protein	0.881	0.935	0.269	1.9e-21
UNIPROTKB|F1NH00	299	HAUS1 "Uncharacterized protein	0.894	0.882	0.266	3e-21
UNIPROTKB|J9PAB4	290	HAUS1 "Uncharacterized protein	0.871	0.886	0.263	3e-21
RGD|619909	278	Haus1 "HAUS augmin-like comple	0.884	0.938	0.263	3e-21
ZFIN|ZDB-GENE-091204-387	306	haus1 "HAUS augmin-like comple	0.854	0.823	0.275	8e-21
MGI|MGI:2385076	278	Haus1 "HAUS augmin-like comple	0.871	0.924	0.263	1.7e-20
UNIPROTKB|Q96CS2	278	HAUS1 "HAUS augmin-like comple	0.894	0.949	0.258	3.5e-20

TAIR|locus:2040247 AUG1 "AT2G41350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 223/280 (79%), Positives = 242/280 (86%)

Query:    17 DAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQK 76
             DAARI++VKAWL SQFEA  KEVP FEYT RS+ HLYNLAT SQAK++AA IVA DFR K
Sbjct:    19 DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSITHLYNLATASQAKSQAATIVANDFRLK 78

Query:    77 AAEYRSQAARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 136
             A+EYR+QAARIREILE+ G++QESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI
Sbjct:    79 ASEYRAQAARIREILESAGMSQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDI 138

Query:   137 SLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNL 196
             SLRKT VEEKRAK QKES  LLDYTRKAI RLTYLK+ L QLEDDV PCE+QMENWKTNL
Sbjct:   139 SLRKTGVEEKRAKAQKESNALLDYTRKAIQRLTYLKKILAQLEDDVVPCESQMENWKTNL 198

Query:   197 AVMASKERQYLQQYNNYKA-LLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255
              VMA KE QY+QQY  Y+  LLNRVGYTP+ISH  LVEMAEHRKEL+K TKP+LDTLRSY
Sbjct:   199 EVMAVKEEQYIQQYKKYEQMLLNRVGYTPKISHRELVEMAEHRKELDKMTKPVLDTLRSY 258

Query:   256 QDLPPDKXXXXXXIEDKKRQYAAAEKYLEDVLHSALATND 295
             QDLPPDK      IEDKKRQ+ AAEKYLE+VL SAL TND
Sbjct:   259 QDLPPDKALAALAIEDKKRQFTAAEKYLEEVLQSALETND 298

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005819 "spindle" evidence=IDA

UNIPROTKB|E2RPA4 HAUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 70/264 (26%), Positives = 129/264 (48%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E  +R+   L++L+ L++ + +   +V  D +QKA+EY 
Sbjct:     9 AQVAAWLKKIF--GDHSIPQYEVNARTTEILHHLSELNRVRDRDVYLVIEDLKQKASEYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++ +L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQNLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199
                + K  +++ E  K+  + T   +     L+  L + E  ++   A+++N   N+  +
Sbjct:   127 FCTKSKNEEIKLELEKVEKNLTATLVLEKC-LREDLKKAELHLSTERAKVDNRLQNMDFL 185

Query:   200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259
              +K  ++       +  L+  G    +SH  LV ++E   EL+++T P+   L SY DL 
Sbjct:   186 KAKSEEFRFGIRTAEEQLSARGMDASLSHQSLVALSEKLAELKQQTIPLKKKLESYLDLM 245

Query:   260 PDKXXXXXXIEDKKRQYAAAEKYL 283
             P+       IE+ KR+    E  L
Sbjct:   246 PNPSLAQVKIEEAKRELDTIEAEL 269

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2TBK4 HAUS1 "HAUS augmin-like complex subunit 1" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 70/264 (26%), Positives = 128/264 (48%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E  + +   LYNL+  ++ + +   +V  D +QKA EY 
Sbjct:     9 AQVAAWLKKIF--GDHPIPQYEVNAWTTEILYNLSERNRIRDRDVYLVTEDLKQKAKEYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++++L E+V  +  SL S        L + A +L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQDLLMESVNFSPASLSSTGSRYLNALVDSAVVLETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVM 199
                + K  +++ E +K+  + T   +     L+  L + E  +    A++++   N+  +
Sbjct:   127 FRTKSKNEEIKLELAKLEKNLTATLVLEKC-LQEDLKKAELHLCTERARVDSRLQNMDFL 185

Query:   200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259
              +K  ++       +  L+  G    +SH  LV ++E   EL+++T P+   L SY DL 
Sbjct:   186 KAKSEEFRSGIRTAEEQLSARGMDASLSHQSLVALSEKLAELKRQTMPLKKKLESYLDLM 245

Query:   260 PDKXXXXXXIEDKKRQYAAAEKYL 283
             P+       IE+ KR+    E  L
Sbjct:   246 PNPSLAQVKIEEAKRELDTIEAEL 269

GO:0003674 "molecular_function" evidence=ND

GO:0070652 "HAUS complex" evidence=ISS

GO:0051297 "centrosome organization" evidence=ISS

GO:0051225 "spindle assembly" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1RPT0 HAUS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 71/263 (26%), Positives = 125/263 (47%)

Query:    22 ADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYR 81
             A V AWL   F      +P +E   R+   L++LA  ++ + +   +V  D +QKA EY 
Sbjct:     9 AQVAAWLKKIF--GDHSIPQYEVNPRTTEILHHLAECNRVRDRDVCLVIEDLKQKAREYE 66

Query:    82 SQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRK 140
             S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++   
Sbjct:    67 SEAKHLQDLLMESVNFSPANLSSAGSKYLNALVDSAVALETKDTSLASFIPAVNDLTSDL 126

Query:   141 TAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMA 200
                + K  ++Q E   L      A+     L+  L + E  ++   A+++N   N+  + 
Sbjct:   127 FRTKSKNEEIQLELGKLEKNLTAALVLEKCLREDLKKAELHLSMERAKVDNRLQNMDFLK 186

Query:   201 SKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPP 260
             +K  ++       +  L+  G    +SH  LV ++E   EL+++T P+   L SY DL P
Sbjct:   187 AKAEEFRSGIRAAEKQLSARGMDASLSHQSLVALSEKLAELKQQTMPLKKKLESYLDLMP 246

Query:   261 DKXXXXXXIEDKKRQYAAAEKYL 283
             +       IE+ KR+    E  L
Sbjct:   247 NPSLAQVKIEEAKRELDTIEAEL 269

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NH00 HAUS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 74/278 (26%), Positives = 128/278 (46%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             + +WL   FE    +VP F+  +++   LY L   S+ + +  + +  D +++AAEY + 
Sbjct:    25 ITSWLKKTFE---NQVPQFDVNTKTTDLLYELVEYSEERERDVSFLIEDMKKRAAEYDAG 81

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
             A  ++ +L E++GL+  SL     +    L + A +L  +DT L+SF  A+ D +L   A
Sbjct:    82 AEYLQSLLTESLGLSPSSLSEEGTAHLNTLVDSAMILETKDTYLTSFFCAISDRTLELHA 141

Query:   143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---AQMENWKTNLAVM 199
              E K  ++++    L++  +K  A L   K+    LE      E   A+ EN   NL  +
Sbjct:   142 AESKNKEMEQR---LVNLKKKLTATLVLEKQLEKDLEKTKTHLEIEVAKSENRLQNLQFL 198

Query:   200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP 259
               K      +    +  L   G    + H  LV M+E   E++++   +   L  Y DLP
Sbjct:   199 EDKSEDLKIRIKTAEEQLAASGLDQSLLHESLVSMSEKLAEMQEEMVHVKKKLEYYLDLP 258

Query:   260 PDKXXXXXXIEDKKRQYAAAE----KYLEDVLHSALAT 293
             P+       +E+ KR+  A E    K +E + H    T
Sbjct:   259 PNLSLARVKVEEAKRELNALEEEFSKQIEMLTHDVQET 296

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0070652 "HAUS complex" evidence=IEA

UNIPROTKB|J9PAB4 HAUS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 69/262 (26%), Positives = 128/262 (48%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V AWL   F      +P +E  +R+   L++L+ L++ + +   +V  D +QKA+EY S+
Sbjct:    23 VAAWLKKIF--GDHSIPQYEVNARTTEILHHLSELNRVRDRDVYLVIEDLKQKASEYESE 80

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
             A  ++ +L E+V  +  +L S        L + A  L  +DT L+SF+ A+ D++     
Sbjct:    81 AKHLQNLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFIPAVNDLTSDLFC 140

Query:   143 VEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMAS 201
              + K  +++ E  K+  + T   +     L+  L + E  ++   A+++N   N+  + +
Sbjct:   141 TKSKNEEIKLELEKVEKNLTATLVLEKC-LREDLKKAELHLSTERAKVDNRLQNMDFLKA 199

Query:   202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD 261
             K  ++       +  L+  G    +SH  LV ++E   EL+++T P+   L SY DL P+
Sbjct:   200 KSEEFRFGIRTAEEQLSARGMDASLSHQSLVALSEKLAELKQQTIPLKKKLESYLDLMPN 259

Query:   262 KXXXXXXIEDKKRQYAAAEKYL 283
                    IE+ KR+    E  L
Sbjct:   260 PSLAQVKIEEAKRELDTIEAEL 281

GO:0070652 "HAUS complex" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0051225 "spindle assembly" evidence=IEA

RGD|619909 Haus1 "HAUS augmin-like complex, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 70/266 (26%), Positives = 129/266 (48%)

Query:    20 RIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAE 79
             + + V  WL   F      +P +E  +R+   LY+L+  ++ + +  N+V  D RQKA+E
Sbjct:     7 KASQVAEWLKKIF--GDHPIPQYEMNARTTEILYHLSERNRVRDRDVNLVIEDLRQKASE 64

Query:    80 YRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISL 138
             Y S+A R+ + L E+V  +  +L +        L + A  L I+DT L+SF+ A+ D++ 
Sbjct:    65 YESEAKRLEDFLMESVNFSPANLSNTGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTS 124

Query:   139 RKTAVEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLA 197
                  + K  +++ E  K+  + T   +     L+  L + +  ++   A+ E    N+ 
Sbjct:   125 DLFRTKSKSEEIKLELGKLEKNLTATLVLEKC-LREDLKKADVHLSAERAKAEGRLQNMD 183

Query:   198 VMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD 257
              + +K  ++       +  L+  G    +SH  LV +++   EL+++T P+   L SY D
Sbjct:   184 FLKAKAAEFRFGIRAAEEQLSSRGMDASLSHRSLVALSDKLSELKQQTIPLKKKLESYLD 243

Query:   258 LPPDKXXXXXXIEDKKRQYAAAEKYL 283
             L P+       IE+ KR+  A E  L
Sbjct:   244 LMPNPSLAQVKIEEAKRELDAIEAEL 269

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051225 "spindle assembly" evidence=ISO;ISS

GO:0051297 "centrosome organization" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0070652 "HAUS complex" evidence=ISO;ISS

ZFIN|ZDB-GENE-091204-387 haus1 "HAUS augmin-like complex, subunit 1" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 74/269 (27%), Positives = 122/269 (45%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V  WL   F    + VP FE  +R+V  LY L    + + + A ++  D  QK  EY S 
Sbjct:    36 VSQWLRKVF--GQQTVPEFEVNTRTVEILYELVQNCETRCREAELLIQDHEQKTHEYSSD 93

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
              A ++E+L + VGL    L    V    VL   A +L +RDT L S++ A+  ++     
Sbjct:    94 GAHLQEVLLQGVGLQTGGLSKPTVDLLSVLEGTAEVLKLRDTSLGSYMPALNKLTNDVLE 153

Query:   143 VEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDD------VAPCEAQM-ENWKTN 195
              E+   K+Q+E    L   RK +     L++   +L+DD      +   EA   E    N
Sbjct:   154 AEKTDRKLQRE----LSAVRKKMTAAVVLRK---KLQDDLIKVTHIQQVEAATAEERLLN 206

Query:   196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY 255
             +  M +K R    +    +  L+       ++H  +++++E    L+++T P+   L  +
Sbjct:   207 MDFMRNKSRDLACRNKIAQEKLDSRQMEDSLTHQAILQLSEKIAALKEETLPLKKKLEPF 266

Query:   256 QDLPPDKXXXXXXIEDKKRQYAAAEKYLE 284
              DL P        IE+ KR+ AA +  LE
Sbjct:   267 SDLSPSPALARVKIEEAKRELAALDAQLE 295

GO:0051225 "spindle assembly" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0070652 "HAUS complex" evidence=IEA

MGI|MGI:2385076 Haus1 "HAUS augmin-like complex, subunit 1" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 69/262 (26%), Positives = 128/262 (48%)

Query:    24 VKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQ 83
             V  WL   F      +P +E  SR+   LY+L+  ++ + +  ++V  D +QKA+EY S+
Sbjct:    11 VAEWLKKVF--GDHPIPQYEMNSRTTEILYHLSERNRVRDRDISLVIEDLKQKASEYESE 68

Query:    84 AARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA 142
             A R+ + L E+V  +  +L  +       L + A  L I+DT L+SF+ A+ D++     
Sbjct:    69 AKRLEDFLMESVNFSPANLSKSGSRFLNALVDSAIALEIKDTSLASFIPAVNDLTSDLFR 128

Query:   143 VEEKRAKVQKE-SKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMAS 201
              + K  +++ E  K+  + T   +     L+  L + E  ++  +A++++   N+  + +
Sbjct:   129 TKSKSEEMKLELGKLEKNLTATLVLEKC-LREDLKKAELQLSAEKAKVDSRLQNMDFLKA 187

Query:   202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPD 261
             K  ++       +  L+  G    +SH  L  ++E   EL+++T P+   L SY DL P 
Sbjct:   188 KAAEFRFGIKAAEEQLSARGMDASLSHRSLAALSEKLSELKEQTIPLKKKLESYLDLMPS 247

Query:   262 KXXXXXXIEDKKRQYAAAEKYL 283
                    IE+ KR+  A E  L
Sbjct:   248 PSLAQLKIEEAKRELDAIEAEL 269

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051225 "spindle assembly" evidence=ISO

GO:0051297 "centrosome organization" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0070652 "HAUS complex" evidence=ISO

UNIPROTKB|Q96CS2 HAUS1 "HAUS augmin-like complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 71/275 (25%), Positives = 135/275 (49%)

Query:    12 PTESRDAARIADVKAWLASQFEASAKEVPAFEYTSRSVAHLYNLATLSQAKTKAANIVAA 71
             P E R+      V AWL   F      +P +E   R+   L++L+  ++ + +   +V  
Sbjct:     3 PQEERET----QVAAWLKKIF--GDHPIPQYEVNPRTTEILHHLSERNRVRDRDVYLVIE 56

Query:    72 DFRQKAAEYRSQAARIREIL-ENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFL 130
             D +QKA+EY S+A  ++++L E+V  +  +L S        L + A  L  +DT L+SF+
Sbjct:    57 DLKQKASEYESEAKYLQDLLMESVNFSPANLSSTGSRYLNALVDSAVALETKDTSLASFI 116

Query:   131 VAMGDIS--LRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQ 188
              A+ D++  L +T  + +  K++ E K+  + T   +     L+  + + E  ++   A+
Sbjct:   117 PAVNDLTSDLFRTKSKSEEIKIELE-KLEKNLTATLVLEKC-LQEDVKKAELHLSTERAK 174

Query:   189 MENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPI 248
             ++N + N+  + +K  ++       +  L+  G    +SH  LV ++E    L+++T P+
Sbjct:   175 VDNRRQNMDFLKAKSEEFRFGIKAAEEQLSARGMDASLSHQSLVALSEKLARLKQQTIPL 234

Query:   249 LDTLRSYQDLPPDKXXXXXXIEDKKRQYAAAEKYL 283
                L SY DL P+       IE+ KR+  + E  L
Sbjct:   235 KKKLESYLDLMPNPSLAQVKIEEAKRELDSIEAEL 269

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0070652 "HAUS complex" evidence=IDA

GO:0051225 "spindle assembly" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020313001 SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence); (298 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PRK09039	343	hypothetical protein; Validated	95.52
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	95.42
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.2
PRK11637	428	AmiB activator; Provisional	94.65
PHA02562	562	46 endonuclease subunit; Provisional	94.28
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	93.67
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.91
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.84
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	92.67
PRK04778	569	septation ring formation regulator EzrA; Provision	92.63
PRK09039	343	hypothetical protein; Validated	92.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.26
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.1
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.94
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	91.7
PRK11637	428	AmiB activator; Provisional	91.52
COG5185	622	HEC1 Protein involved in chromosome segregation, i	91.46
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.13
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.64
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	90.44
KOG0963	629	consensus Transcription factor/CCAAT displacement	89.67
PRK02224	880	chromosome segregation protein; Provisional	89.59
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	89.59
PRK03918	880	chromosome segregation protein; Provisional	88.7
PF13514	1111	AAA_27: AAA domain	87.97
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.92
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	87.77
PRK02224	880	chromosome segregation protein; Provisional	87.56
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.53
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.45
PRK11519	719	tyrosine kinase; Provisional	87.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.06
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.03
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.8
KOG2911	439	consensus Uncharacterized conserved protein [Funct	86.58
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	86.55
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.71
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.61
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	85.33
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	84.85
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	84.35
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.06
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	84.02
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	84.01
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.77
KOG0963	629	consensus Transcription factor/CCAAT displacement	83.39
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	83.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	83.19
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.58
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	82.35
PRK04778	569	septation ring formation regulator EzrA; Provision	81.86
KOG0996	1293	consensus Structural maintenance of chromosome pro	81.45
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	81.11
PRK11281	1113	hypothetical protein; Provisional	80.78
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.63
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	80.45
KOG0971	1243	consensus Microtubule-associated protein dynactin	80.28

>PRK09039 hypothetical protein; Validated

Probab=95.52  E-value=2  Score=41.87  Aligned_cols=144  Identities=13%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch---hhHHHHHHh----HHH
Q 022524          126 LSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE---AQMENWKTN----LAV  198 (295)
Q Consensus       126 ~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~---~~~~~~~r~----~k~  198 (295)
                      +.=|+.+=.=|+.++...++...+++.+|..|-..+.=+......|...+.+++.+....+   .....|...    ..-
T Consensus        34 l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~  113 (343)
T PRK09039         34 LTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA  113 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Confidence            5667777777888888888888888888888887777777777777767776665542111   222222111    112


Q ss_pred             HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524          199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA  278 (295)
Q Consensus       199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~  278 (295)
                      +..+...+...++..+..       .+-.|..|..+..++..|++++..|+..|..-..=-   ..++.+|+..+++|..
T Consensus       114 ~~~~~~~l~~~L~~~k~~-------~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        114 AEGRAGELAQELDSEKQV-------SARALAQVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNV  183 (343)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            333344444444333332       122556666676777777777666666665433211   4444444444444444


Q ss_pred             H
Q 022524          279 A  279 (295)
Q Consensus       279 L  279 (295)
                      .
T Consensus       184 a  184 (343)
T PRK09039        184 A  184 (343)
T ss_pred             H
Confidence            4

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=95.42  E-value=2.3  Score=39.60  Aligned_cols=111  Identities=19%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhhhhhccc--cchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHH-------H
Q 022524          165 IARLTYLKRTLGQLEDDVA--PCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEM-------A  235 (295)
Q Consensus       165 l~~~~~L~~~L~~L~~d~~--~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~-------~  235 (295)
                      .+-..+|.+++.-|+.=+.  .+..+..--..+.+.|.+|++-..-+|...+-.+-..-|+    .++|.++       .
T Consensus       109 ~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYT----pe~v~Al~~Ir~~L~  184 (238)
T PF14735_consen  109 ATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYT----PETVPALRKIRDHLE  184 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----HHhHHHHHHHHHHHH
Confidence            3344455555555543221  2233433334567788888888888888888766655664    3444433       3


Q ss_pred             HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV  286 (295)
Q Consensus       236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~  286 (295)
                      +.+.++..+.......|++|.++.|+..       +.=+||.++-.+++.+
T Consensus       185 ~~~~~~e~~~~~a~~~L~~Ye~lg~~F~-------~ivreY~~l~~~ie~k  228 (238)
T PF14735_consen  185 EAIEELEQELQKARQRLESYEGLGPEFE-------EIVREYTDLQQEIENK  228 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHhHH-------HHHHHHHHHHHHHHHH
Confidence            6778888999999999999999999988       6667777777766655

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.20  E-value=1.7  Score=41.03  Aligned_cols=85  Identities=19%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             HHhh-HHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 022524          199 MASK-ERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYA  277 (295)
Q Consensus       199 L~aK-~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~  277 (295)
                      |.+| ..++..|+.+...-..       ..-..|.+..++-..|+.....++++++.+..|--+.+.=+..|+.-+.|+.
T Consensus       124 l~SkSfsD~IsRvtAi~~iv~-------aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~  196 (265)
T COG3883         124 LNSKSFSDLISRVTAISVIVD-------ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN  196 (265)
T ss_pred             HccCcHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555 6667777766554311       2233455556677788888888888888888888888877788888888888


Q ss_pred             HHHHHHHHHHHHh
Q 022524          278 AAEKYLEDVLHSA  290 (295)
Q Consensus       278 ~Le~~l~~~~~~~  290 (295)
                      .+...+-....++
T Consensus       197 ~l~~~~aa~~a~~  209 (265)
T COG3883         197 ALIAALAAKEASA  209 (265)
T ss_pred             HHHHHHHHHHHHh
Confidence            8877776555443

>PRK11637 AmiB activator; Provisional

Probab=94.65  E-value=5.2  Score=39.73  Aligned_cols=18  Identities=11%  Similarity=0.137  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022524          140 KTAVEEKRAKVQKESKIL  157 (295)
Q Consensus       140 ~~~~e~~~~rl~~~i~~L  157 (295)
                      +.+++++....+.++..+
T Consensus        49 l~~l~~qi~~~~~~i~~~   66 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQ   66 (428)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.28  E-value=6.9  Score=39.64  Aligned_cols=14  Identities=7%  Similarity=0.240  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhhcc
Q 022524           20 RIADVKAWLASQFE   33 (295)
Q Consensus        20 ~~s~V~sWL~~~f~   33 (295)
                      +...+..|+...|+
T Consensus       111 ~~~~~~~~i~~~~g  124 (562)
T PHA02562        111 SSKDFQKYFEQMLG  124 (562)
T ss_pred             cHHHHHHHHHHHHC
Confidence            34468899999886

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=93.67  E-value=13  Score=40.57  Aligned_cols=20  Identities=5%  Similarity=0.092  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 022524          266 ALAIEDKKRQYAAAEKYLED  285 (295)
Q Consensus       266 r~kiEear~EL~~Le~~l~~  285 (295)
                      +.+++.++.++..+..++.+
T Consensus       921 ~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       921 REKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.91  E-value=11  Score=37.81  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             hhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcH----HH-H--HH---HH-HHHHHHHHh
Q 022524          176 GQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISH----GV-L--VE---MA-EHRKELEKK  244 (295)
Q Consensus       176 ~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh----~~-l--~~---~~-e~~~eL~~~  244 (295)
                      .+...++.+...+..+...++..|..+.++=+.+++..=+.+..+|-+|++..    +. .  +-   .+ .=..++.++
T Consensus        83 ~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~  162 (420)
T COG4942          83 IETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAER  162 (420)
T ss_pred             HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHH
Confidence            33333333344444455555555665555555666655555667787775221    11 1  11   11 223366677


Q ss_pred             cHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022524          245 TKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKY  282 (295)
Q Consensus       245 ~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~  282 (295)
                      +..|...+..-...       +..|+.-+.++..+..+
T Consensus       163 i~~l~~~~~~l~~~-------~~~iaaeq~~l~~~~~e  193 (420)
T COG4942         163 IDALKATLKQLAAV-------RAEIAAEQAELTTLLSE  193 (420)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            77777777654444       44455555555544433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.84  E-value=4.9  Score=41.70  Aligned_cols=63  Identities=14%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHhcHhHHHhhhhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022524          229 GVLVEMAEHRKELEKKTKPILDTLRSYQDL-PPDKALAALAIEDKKRQYAAAEKYLEDVLHSALA  292 (295)
Q Consensus       229 ~~l~~~~e~~~eL~~~~k~L~~kL~sy~dL-Ppd~~lAr~kiEear~EL~~Le~~l~~~~~~~~~  292 (295)
                      ..|+..+++...|+.+...|+++|+-= |+ |.|+..-..+.+...|+|..+..+++...|.+..
T Consensus       301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~  364 (581)
T KOG0995|consen  301 SEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE  364 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367777788888899999999988754 44 5578888888999999999999999888887654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=92.67  E-value=21  Score=40.21  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             HHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          240 ELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH  288 (295)
Q Consensus       240 eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~  288 (295)
                      ++...+..++.+++.+-...   ..|-.++++.+..|+.|..++.+..+
T Consensus       946 ~~~~~i~~le~~i~~lg~VN---~~Aiee~e~~~~r~~~l~~~~~dl~~  991 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEE  991 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777766665444   56777888888888888877766544

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.63  E-value=3.9  Score=42.32  Aligned_cols=142  Identities=17%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHH-----------------HHhHHHHHh
Q 022524          139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENW-----------------KTNLAVMAS  201 (295)
Q Consensus       139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~-----------------~r~~k~L~a  201 (295)
                      ++-.++..+..++.+|+.|-+-+.++..+-....+....+.+.+.....+....                 .....-+..
T Consensus       276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek  355 (569)
T PRK04778        276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK  355 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence            444566677778888888888888888888777766666655543322222222                 222444444


Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524          202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK  281 (295)
Q Consensus       202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~  281 (295)
                      ++.++..++..+...++.....-+..-..+..+.+.+.++......+...|.   +|..+-.-|+.+|+..+..+..+..
T Consensus       356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~---~Lrk~E~eAr~kL~~~~~~L~~ikr  432 (569)
T PRK04778        356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ---GLRKDELEAREKLERYRNKLHEIKR  432 (569)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555554444433333321111112222222333333333333333332   4445555555555555555555554


Q ss_pred             HH
Q 022524          282 YL  283 (295)
Q Consensus       282 ~l  283 (295)
                      .+
T Consensus       433 ~l  434 (569)
T PRK04778        433 YL  434 (569)
T ss_pred             HH
Confidence            33

>PRK09039 hypothetical protein; Validated

Probab=92.62  E-value=7.6  Score=37.81  Aligned_cols=98  Identities=13%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHH
Q 022524          112 LANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMEN  191 (295)
Q Consensus       112 La~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~  191 (295)
                      +++++.+|++.......+-..|.++..++..++..+.+++.......       .....++..+..++.++........+
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~-------~~~~~~~~~~~~l~~~L~~~k~~~se  134 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA-------GAGAAAEGRAGELAQELDSEKQVSAR  134 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            34467777777777777778888888888777776665543333221       11112222333333333222233334


Q ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHH
Q 022524          192 WKTNLAVMASKERQYLQQYNNYKAL  216 (295)
Q Consensus       192 ~~r~~k~L~aK~~Ey~~ri~~le~~  216 (295)
                      ..+.+..|...+..++.++++++..
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~  159 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAA  159 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666555554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.26  E-value=20  Score=40.40  Aligned_cols=149  Identities=11%  Similarity=0.201  Sum_probs=76.8

Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhccccc---hhhHHHHHHhHHHHHhhHHH
Q 022524          136 ISLRKTAVEEKRAKVQKESKILLDYT-------RKAIARLTYLKRTLGQLEDDVAPC---EAQMENWKTNLAVMASKERQ  205 (295)
Q Consensus       136 Lt~e~~~~e~~~~rl~~~i~~L~~~l-------~k~l~~~~~L~~~L~~L~~d~~~~---~~~~~~~~r~~k~L~aK~~E  205 (295)
                      +..+....++....+..++..+...+       .+.......|++++++++..+.+.   .....+.+.++.-++.+..+
T Consensus       797 ~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~  876 (1293)
T KOG0996|consen  797 HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEE  876 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555444444444443333       344444455555555555542111   12222333344455555555


Q ss_pred             H------HHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh----cCCCCCHHHHHHHHHHHHHH
Q 022524          206 Y------LQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY----QDLPPDKALAALAIEDKKRQ  275 (295)
Q Consensus       206 y------~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy----~dLPpd~~lAr~kiEear~E  275 (295)
                      .      ..+|+.++..+...|.      ..+.....++..+.+++.-|.+.++.-    ..=+-++..++.+|.++.++
T Consensus       877 ~qe~~~Kk~~i~~lq~~i~~i~~------e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~  950 (1293)
T KOG0996|consen  877 LQEKAAKKARIKELQNKIDEIGG------EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE  950 (1293)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhhc------hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence            5      2445555555444444      122222244444455555444444332    34577888888888888888


Q ss_pred             HHHHHHHHHHHHHHh
Q 022524          276 YAAAEKYLEDVLHSA  290 (295)
Q Consensus       276 L~~Le~~l~~~~~~~  290 (295)
                      ...++.++..+.+..
T Consensus       951 ~~~~e~e~~~L~e~~  965 (1293)
T KOG0996|consen  951 IEDTEKELDDLTEEL  965 (1293)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888777665543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.10  E-value=9.7  Score=39.95  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             HHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHh
Q 022524          172 KRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDT  251 (295)
Q Consensus       172 ~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~k  251 (295)
                      .+.+.+++..+..+.............+.....+.+.++..++..+.+.|-+   ..+...++.....+++.+....+++
T Consensus       208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~---~~~~r~~Le~ei~~le~e~~e~~~~  284 (650)
T TIGR03185       208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD---LFEEREQLERQLKEIEAARKANRAQ  284 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555544443444444555566777777777777887777777766652   5566778888999999999999999


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524          252 LRSYQDLPPDKALAALAIEDKKRQYAAAE  280 (295)
Q Consensus       252 L~sy~dLPpd~~lAr~kiEear~EL~~Le  280 (295)
                      ++.|.+=+--..++..-++.++.++....
T Consensus       285 l~~l~~~~~p~~l~~~ll~~~~~q~~~e~  313 (650)
T TIGR03185       285 LRELAADPLPLLLIPNLLDSTKAQLQKEE  313 (650)
T ss_pred             HHHHhcccCCHhhhHHHHHHHHHHHHHHH
Confidence            99999555556666777777777776643

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.94  E-value=25  Score=39.54  Aligned_cols=6  Identities=0%  Similarity=0.113  Sum_probs=2.1

Q ss_pred             hcHhHH
Q 022524          244 KTKPIL  249 (295)
Q Consensus       244 ~~k~L~  249 (295)
                      +...++
T Consensus       885 ~~~~l~  890 (1163)
T COG1196         885 EKEELE  890 (1163)
T ss_pred             HHHHHH
Confidence            333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=91.70  E-value=12  Score=41.69  Aligned_cols=50  Identities=12%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             HHHHHHHhcHhHHHhhhhh-----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          237 HRKELEKKTKPILDTLRSY-----QDLPPDKALAALAIEDKKRQYAAAEKYLEDV  286 (295)
Q Consensus       237 ~~~eL~~~~k~L~~kL~sy-----~dLPpd~~lAr~kiEear~EL~~Le~~l~~~  286 (295)
                      .+.+++..+..++++|.-|     +.+-+..+..+.+++.+++|.+.++.++..+
T Consensus       366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L  420 (1074)
T KOG0250|consen  366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL  420 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555443     5677888888888888888888877665444

>PRK11637 AmiB activator; Provisional

Probab=91.52  E-value=3.9  Score=40.64  Aligned_cols=21  Identities=14%  Similarity=-0.027  Sum_probs=8.6

Q ss_pred             HHHHHHHHHhHhHHHHHHHHH
Q 022524          128 SFLVAMGDISLRKTAVEEKRA  148 (295)
Q Consensus       128 sl~~ai~~Lt~e~~~~e~~~~  148 (295)
                      ..-..+-++..++...++...
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~   64 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVR   64 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444443333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=91.46  E-value=9.4  Score=39.05  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=52.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHH
Q 022524          196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQ  275 (295)
Q Consensus       196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~E  275 (295)
                      ++.|+.|.++|--.++.++              ..|+..++++..|+++...|.++|+--.==|.+..+--.+-|.+-||
T Consensus       318 ~~~mk~K~~~~~g~l~kl~--------------~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~re  383 (622)
T COG5185         318 VNAMKQKSQEWPGKLEKLK--------------SEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRE  383 (622)
T ss_pred             HHHHHHHHHhcchHHHHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4556666666655554443              36777778888888888888888876444455666666666777777


Q ss_pred             HHHHHHHHHHHHH
Q 022524          276 YAAAEKYLEDVLH  288 (295)
Q Consensus       276 L~~Le~~l~~~~~  288 (295)
                      |..+-.+-+.++.
T Consensus       384 L~~i~~~~~~L~k  396 (622)
T COG5185         384 LDKINIQSDKLTK  396 (622)
T ss_pred             HHHhcchHHHHHH
Confidence            7776655544443

>TIGR00606 rad50 rad50

Probab=91.13  E-value=13  Score=42.23  Aligned_cols=49  Identities=14%  Similarity=0.041  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcHhHHHhhhhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          236 EHRKELEKKTKPILDTLRSYQDL--PPDKALAALAIEDKKRQYAAAEKYLE  284 (295)
Q Consensus       236 e~~~eL~~~~k~L~~kL~sy~dL--Ppd~~lAr~kiEear~EL~~Le~~l~  284 (295)
                      ..+.....++..+...+..|.+.  |..+.....++......+..++.+..
T Consensus       944 ~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~  994 (1311)
T TIGR00606       944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQE  994 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666677777777643  55455444555555544444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.64  E-value=9.6  Score=32.29  Aligned_cols=45  Identities=11%  Similarity=0.123  Sum_probs=25.9

Q ss_pred             HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHH
Q 022524           85 ARIREILENVGLAQESLPSNVVSSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTA  142 (295)
Q Consensus        85 ~~l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~  142 (295)
                      .++..-|.+.|+....+...+.             +....+...++..|.+|-.....
T Consensus         5 ~yiN~~L~s~G~~~~~~~~~~~-------------~~~~~~~~~vin~i~~Ll~~~~r   49 (151)
T PF11559_consen    5 EYINQQLLSRGYPSDGLLFDSA-------------EESEDNDVRVINCIYDLLQQRDR   49 (151)
T ss_pred             HHHHHHHHHCCCCCCCccCccc-------------ccccccHHHHHHHHHHHHHHHHH
Confidence            4566767788877655554443             34444555566666666554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=90.44  E-value=18  Score=34.98  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 022524          201 SKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAE  280 (295)
Q Consensus       201 aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le  280 (295)
                      ..+.+++.++..++.++....-.-.-.|..++.+...+..|++++....+++....+  .+......+++++++|.+-.+
T Consensus       214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~  291 (362)
T TIGR01010       214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQ  291 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555544321101125889999999999999999998888876543  345556667888888877776


Q ss_pred             HHHHHHHH
Q 022524          281 KYLEDVLH  288 (295)
Q Consensus       281 ~~l~~~~~  288 (295)
                      ..++..++
T Consensus       292 ~~y~~~l~  299 (362)
T TIGR01010       292 QQLKAALT  299 (362)
T ss_pred             HHHHHHHH
Confidence            66654443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=89.67  E-value=30  Score=36.46  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 022524          108 SAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEK----RAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA  183 (295)
Q Consensus       108 aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~----~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~  183 (295)
                      ..+..-+++-.++..+-...++..++-+...++|+.+.+    ..-.+-++..+...+.+.-.++..|++....|.+.+.
T Consensus       187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~  266 (629)
T KOG0963|consen  187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA  266 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555677777877888899999999999999998887    3333557777777888888888888777677766543


Q ss_pred             cch-----hhHHHHHHhHHHHHhh---HHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524          184 PCE-----AQMENWKTNLAVMASK---ERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY  255 (295)
Q Consensus       184 ~~~-----~~~~~~~r~~k~L~aK---~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy  255 (295)
                      +..     .+..+--.+.-.|..|   +.++-.-|...++++..---   -.-..|-++...+......+..++.+|..|
T Consensus       267 ~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e---~~~~qI~~le~~l~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  267 KANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE---KHKAQISALEKELKAKISELEELKEKLNSR  343 (629)
T ss_pred             hhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            211     1111111111122223   33344445555544321000   122356667777888888888999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524          256 QDLPPDKALAALAIEDKKRQYAAAEK  281 (295)
Q Consensus       256 ~dLPpd~~lAr~kiEear~EL~~Le~  281 (295)
                          .|       +++.|+||.-|.+
T Consensus       344 ----sD-------YeeIK~ELsiLk~  358 (629)
T KOG0963|consen  344 ----SD-------YEEIKKELSILKA  358 (629)
T ss_pred             ----cc-------HHHHHHHHHHHHH
Confidence                44       4588888877653

>PRK02224 chromosome segregation protein; Provisional

Probab=89.59  E-value=26  Score=37.79  Aligned_cols=14  Identities=14%  Similarity=0.181  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHhhcc
Q 022524           20 RIADVKAWLASQFE   33 (295)
Q Consensus        20 ~~s~V~sWL~~~f~   33 (295)
                      ....|+.|+...+|
T Consensus       110 ~~~~~~~~i~~llg  123 (880)
T PRK02224        110 GARDVREEVTELLR  123 (880)
T ss_pred             ChHHHHHHHHHHHC
Confidence            44568889888875

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=89.59  E-value=9.2  Score=39.59  Aligned_cols=144  Identities=17%  Similarity=0.239  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch-----------------hhHHHHHHhHHHHHh
Q 022524          139 RKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCE-----------------AQMENWKTNLAVMAS  201 (295)
Q Consensus       139 e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~-----------------~~~~~~~r~~k~L~a  201 (295)
                      ++.+++..+..++.+|+.|-+-+.++..+-....+.+..+.+.+....                 --.+.+..+.+.+..
T Consensus       272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~  351 (560)
T PF06160_consen  272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEK  351 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            444566666677778888877778877777666655555544432211                 111233444555666


Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524          202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK  281 (295)
Q Consensus       202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~  281 (295)
                      ++.....+...+...+......-|..-..+..+.+.+.++.++...+..   ...+|+.|-..||.++...+..+..+..
T Consensus       352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~---~l~~L~~dE~~Ar~~l~~~~~~l~~ikR  428 (560)
T PF06160_consen  352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINE---SLQSLRKDEKEAREKLQKLKQKLREIKR  428 (560)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555554443232333444444444444444444443   3456788888888888888888888877


Q ss_pred             HHHH
Q 022524          282 YLED  285 (295)
Q Consensus       282 ~l~~  285 (295)
                      .+++
T Consensus       429 ~lek  432 (560)
T PF06160_consen  429 RLEK  432 (560)
T ss_pred             HHHH
Confidence            7643

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK03918 chromosome segregation protein; Provisional

Probab=88.70  E-value=38  Score=36.38  Aligned_cols=11  Identities=18%  Similarity=0.694  Sum_probs=6.1

Q ss_pred             HHHHHHHHhhc
Q 022524           22 ADVKAWLASQF   32 (295)
Q Consensus        22 s~V~sWL~~~f   32 (295)
                      +.|..|+...+
T Consensus       111 ~~~~~~i~~~~  121 (880)
T PRK03918        111 SSVREWVERLI  121 (880)
T ss_pred             HHHHHHHHHhc
Confidence            34566666544

>PF13514 AAA_27: AAA domain

Probab=87.97  E-value=50  Score=36.96  Aligned_cols=70  Identities=23%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC-CC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          219 RVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD-LP----------PDKALAALAIEDKKRQYAAAEKYLEDVL  287 (295)
Q Consensus       219 ~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d-LP----------pd~~lAr~kiEear~EL~~Le~~l~~~~  287 (295)
                      ..|....-.-..+....+.+.++..++..++.+|....+ ++          .|++....+++.++.++..++.++....
T Consensus       837 ~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~  916 (1111)
T PF13514_consen  837 QAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQ  916 (1111)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356532222234445557888888888888888854332 11          2445556667777777777777766554


Q ss_pred             H
Q 022524          288 H  288 (295)
Q Consensus       288 ~  288 (295)
                      .
T Consensus       917 ~  917 (1111)
T PF13514_consen  917 E  917 (1111)
T ss_pred             H
Confidence            3

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.92  E-value=20  Score=32.38  Aligned_cols=57  Identities=19%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             CchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022524          124 TELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLED  180 (295)
Q Consensus       124 ts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~  180 (295)
                      |..++++..|.||+.--..+...+..+++.+++....-.+-...+..|++++..++.
T Consensus         1 ~~t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq   57 (193)
T PF14662_consen    1 PATSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ   57 (193)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888999988877888888888888888776655555556777766666654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=87.77  E-value=38  Score=35.30  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          264 LAALAIEDKKRQYAAAEKYLEDVLHS  289 (295)
Q Consensus       264 lAr~kiEear~EL~~Le~~l~~~~~~  289 (295)
                      .-..+++.++.+|+.++.++...-|.
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~  305 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQE  305 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466677777787777777655444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02224 chromosome segregation protein; Provisional

Probab=87.56  E-value=45  Score=35.95  Aligned_cols=56  Identities=13%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhcHhHHHhhhhhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          231 LVEMAEHRKELEKKTKPILDTLRSYQD----LPPDKALAALAIEDKKRQYAAAEKYLEDV  286 (295)
Q Consensus       231 l~~~~e~~~eL~~~~k~L~~kL~sy~d----LPpd~~lAr~kiEear~EL~~Le~~l~~~  286 (295)
                      +....+.+..+.+++..|+..+..|..    +-+....+..+|.+..+++..++.++.+.
T Consensus       532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  591 (880)
T PRK02224        532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL  591 (880)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344446666777777777777766665    55666666666666666666666665544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=87.53  E-value=11  Score=40.20  Aligned_cols=25  Identities=12%  Similarity=0.123  Sum_probs=15.5

Q ss_pred             HhHHHHHhhHHHHHHHHHHHHHHhh
Q 022524          194 TNLAVMASKERQYLQQYNNYKALLN  218 (295)
Q Consensus       194 r~~k~L~aK~~Ey~~ri~~le~~l~  218 (295)
                      +++..|..|+.+-+..-..+|++|.
T Consensus       488 q~l~~LEkrL~eE~~~R~~lEkQL~  512 (697)
T PF09726_consen  488 QSLQQLEKRLAEERRQRASLEKQLQ  512 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666654

; GO: 0016021 integral to membrane

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.45  E-value=28  Score=33.45  Aligned_cols=44  Identities=7%  Similarity=0.008  Sum_probs=26.9

Q ss_pred             HHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 022524          111 VLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKES  154 (295)
Q Consensus       111 aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i  154 (295)
                      .|.+..+.+-+.-|=+.-|.++.-.|.+.+.+..+....++.++
T Consensus        55 sl~~~~~A~~~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~   98 (325)
T PF08317_consen   55 SLEDYVVAGYCTVPMLELYQFSCRELKKYISEGRQIFEEIEEET   98 (325)
T ss_pred             CHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555666677777777777777666665555444444

>PRK11519 tyrosine kinase; Provisional

Probab=87.43  E-value=44  Score=35.64  Aligned_cols=82  Identities=13%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHH
Q 022524          193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDK  272 (295)
Q Consensus       193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEea  272 (295)
                      ...+..+.++..+.+.+.+.+...   -|    ..|..++.+......|.+++..++.++..   +|    ..+.++.+.
T Consensus       310 l~~~~~l~~ql~~l~~~~~~l~~~---y~----~~hP~v~~l~~~~~~L~~~~~~l~~~~~~---lp----~~e~~~~~L  375 (719)
T PRK11519        310 LDSMVNIDAQLNELTFKEAEISKL---YT----KEHPAYRTLLEKRKALEDEKAKLNGRVTA---MP----KTQQEIVRL  375 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hc----ccCcHHHHHHHHHHHHHHHHHHHHHHHHh---cc----HHHHHHHHH
Confidence            334444555555554444433221   22    26788888888888888888888877764   44    355677777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022524          273 KRQYAAAEKYLEDVLH  288 (295)
Q Consensus       273 r~EL~~Le~~l~~~~~  288 (295)
                      +|+.+.-+.-++..++
T Consensus       376 ~Re~~~~~~lY~~lL~  391 (719)
T PRK11519        376 TRDVESGQQVYMQLLN  391 (719)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777766666555443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.06  E-value=48  Score=35.68  Aligned_cols=84  Identities=14%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHH
Q 022524          129 FLVAMGDISLRKT-AVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYL  207 (295)
Q Consensus       129 l~~ai~~Lt~e~~-~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~  207 (295)
                      |..|+--|..+.+ ..+..+.+++++++.|.....+.+..+..+.+..+.++....       ....+++-...|-+.+.
T Consensus       541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae-------~LaeR~e~a~d~Qe~L~  613 (717)
T PF10168_consen  541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAE-------KLAERYEEAKDKQEKLM  613 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            4445444555533 344445578889999988888888888777755555543222       22224556666666777


Q ss_pred             HHHHHHHHHhhh
Q 022524          208 QQYNNYKALLNR  219 (295)
Q Consensus       208 ~ri~~le~~l~~  219 (295)
                      .|+..+-..+..
T Consensus       614 ~R~~~vl~~l~~  625 (717)
T PF10168_consen  614 KRVDRVLQLLNS  625 (717)
T ss_pred             HHHHHHHHHHhc
Confidence            777666555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.03  E-value=23  Score=31.93  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHH
Q 022524          127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQY  206 (295)
Q Consensus       127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey  206 (295)
                      +.=.+-|..|.++++++.....++..+...|..--.+...++.       .+++.-..+|--+..+...+..|..+++.+
T Consensus         8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~-------k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~   80 (194)
T PF15619_consen    8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQ-------KYEDTEAELPQLLQRHNEEVRVLRERLRKS   80 (194)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345678889999999988888887787777554444333333       333322333333444444555666666665


Q ss_pred             HHHHHHHHHH
Q 022524          207 LQQYNNYKAL  216 (295)
Q Consensus       207 ~~ri~~le~~  216 (295)
                      +++..+++..
T Consensus        81 q~~~r~~~~k   90 (194)
T PF15619_consen   81 QEQERELERK   90 (194)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.80  E-value=29  Score=32.92  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhh----h---cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCC
Q 022524          187 AQMENWKTNLAVMASKERQYLQQYNNYKALLN----R---VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLP  259 (295)
Q Consensus       187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~----~---~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLP  259 (295)
                      .....-..+++-|..++.+...+|......|.    +   .|-..+ ....|.. ++.+.++-.++-.+..=+..=.++-
T Consensus        73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~-Yidvil~-SkSfsD~IsRvtAi~~iv~aDk~il  150 (265)
T COG3883          73 KEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS-YIDVILN-SKSFSDLISRVTAISVIVDADKKIL  150 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHc-cCcHHHHHHHHHHHHHHHHHhHHHH
Confidence            33444555666677777777666655444332    2   222221 2233332 2455555555555444444333333


Q ss_pred             C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          260 P-------DKALAALAIEDKKRQYAAAEKYLEDVLHS  289 (295)
Q Consensus       260 p-------d~~lAr~kiEear~EL~~Le~~l~~~~~~  289 (295)
                      -       .++..+..++....+|..+-.+++...++
T Consensus       151 e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~  187 (265)
T COG3883         151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNS  187 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3       34556666677777777777777665543

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.58  E-value=38  Score=34.25  Aligned_cols=70  Identities=20%  Similarity=0.265  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022524          204 RQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYL  283 (295)
Q Consensus       204 ~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l  283 (295)
                      .-|+....++++.+.. |.    +-+.+.+.-+++.+...+.++.++.|.+|-  |++.+.+-   |+..+||+.|+...
T Consensus       317 ~AyksGs~alK~il~~-~~----s~ekVed~Ldev~et~d~~~EV~~~la~~~--~~~~d~~d---e~lEkEL~~L~~D~  386 (439)
T KOG2911|consen  317 QAYKSGSEALKAILAQ-GG----STEKVEDVLDEVNETLDRQEEVEDALASYN--VNNIDFED---EDLEKELEDLEADE  386 (439)
T ss_pred             HHHHHhHHHHHHHHhc-cC----ChhhHHHHHHHHHHHHhhHHHHHHHHhcCC--CCCCccch---HHHHHHHHHHHhcc
Confidence            3477777888877665 44    335677777888899999999999999874  45444332   35556777776654

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=86.55  E-value=80  Score=37.78  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524          202 KERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK  281 (295)
Q Consensus       202 K~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~  281 (295)
                      -++-+..||..+|.+|..-|-..--....+......+.++..++..=++.+..+++   +++....++...|+++...+.
T Consensus      1802 ~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~---~~dkl~~k~~~~krQleeaE~ 1878 (1930)
T KOG0161|consen 1802 QIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQD---LVDKLQAKIKQYKRQLEEAEE 1878 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHH
Confidence            36666677777777765433311112223333333334444333333333333333   344455555666666666665


Q ss_pred             HHHH
Q 022524          282 YLED  285 (295)
Q Consensus       282 ~l~~  285 (295)
                      +-+.
T Consensus      1879 ~~~~ 1882 (1930)
T KOG0161|consen 1879 EANQ 1882 (1930)
T ss_pred             HHHH
Confidence            5433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.50  E-value=24  Score=31.64  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHh---------hh--cCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhh
Q 022524          187 AQMENWKTNLAVMASKERQYLQQYNNYKALL---------NR--VGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSY  255 (295)
Q Consensus       187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l---------~~--~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy  255 (295)
                      ........++.-|..|+.+++.+...+....         +.  .|++       +-.-...+..+.+++..++.+...+
T Consensus       112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~-------~~~a~~~~er~e~ki~~~ea~a~a~  184 (221)
T PF04012_consen  112 AQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS-------VSSAMDSFERMEEKIEEMEARAEAS  184 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555666666666666554443321         11  2222       2222355667778888888888888


Q ss_pred             cCCCC
Q 022524          256 QDLPP  260 (295)
Q Consensus       256 ~dLPp  260 (295)
                      ..|..
T Consensus       185 ~el~~  189 (221)
T PF04012_consen  185 AELAD  189 (221)
T ss_pred             HHhcc
Confidence            88874

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.71  E-value=27  Score=32.70  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022524          129 FLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV  182 (295)
Q Consensus       129 l~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~  182 (295)
                      +-..|-+++.+...++-....+..+++.+...+..+......+...+..|+.++
T Consensus        59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l  112 (312)
T PF00038_consen   59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL  112 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            334444555555555555555555666666555666655555555555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.61  E-value=42  Score=33.67  Aligned_cols=52  Identities=12%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          235 AEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDV  286 (295)
Q Consensus       235 ~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~  286 (295)
                      ...+..+..+...|..++..+..---.......++....|+++..+..++..
T Consensus       323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l  374 (498)
T TIGR03007       323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQL  374 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666655444333333344566666666666665555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=85.33  E-value=25  Score=35.24  Aligned_cols=21  Identities=19%  Similarity=0.096  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 022524          263 ALAALAIEDKKRQYAAAEKYL  283 (295)
Q Consensus       263 ~lAr~kiEear~EL~~Le~~l  283 (295)
                      ..++..++.++.++..+..++
T Consensus       320 ~~~~~~~~~l~~~~~~l~~~~  340 (498)
T TIGR03007       320 AEAEAEIASLEARVAELTARI  340 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=84.85  E-value=33  Score=40.75  Aligned_cols=84  Identities=12%  Similarity=0.187  Sum_probs=41.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHH
Q 022524          196 LAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQ  275 (295)
Q Consensus       196 ~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~E  275 (295)
                      +.-++.+..++....+..+..+...+.       .+..+...+..+.+.++.|..+++--.+-+-.-..+|.++|.++++
T Consensus      1057 ~~~~~~~~~el~~~l~kke~El~~l~~-------k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~d 1129 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQS-------KLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRD 1129 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333566666666666665555443332       2333334444444444444444444333333345566666666554


Q ss_pred             H----HHHHHHHHHH
Q 022524          276 Y----AAAEKYLEDV  286 (295)
Q Consensus       276 L----~~Le~~l~~~  286 (295)
                      |    ..+..+|++.
T Consensus      1130 L~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1130 LSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            4    4444444444

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=84.35  E-value=62  Score=34.55  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHH
Q 022524          193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDK  272 (295)
Q Consensus       193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEea  272 (295)
                      ..++.-+.++..+.+.+.+.+...   -|.    .|..+..+......|.+++..++.++..+   |    ..++++.+.
T Consensus       310 l~~~~~l~~ql~~l~~~~~~l~~~---~~~----~hP~v~~l~~~~~~L~~~~~~l~~~~~~~---p----~~e~~~~~L  375 (726)
T PRK09841        310 LEQIVNVDNQLNELTFREAEISQL---YKK----DHPTYRALLEKRQTLEQERKRLNKRVSAM---P----STQQEVLRL  375 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcc----cCchHHHHHHHHHHHHHHHHHHHHHHHhc---c----HHHHHHHHH
Confidence            334444555555554444333221   232    67788888888888999998888887643   3    345677777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 022524          273 KRQYAAAEKYLEDVLH  288 (295)
Q Consensus       273 r~EL~~Le~~l~~~~~  288 (295)
                      +|+.+..+.-++..++
T Consensus       376 ~R~~~~~~~lY~~lL~  391 (726)
T PRK09841        376 SRDVEAGRAVYLQLLN  391 (726)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777666555433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.06  E-value=28  Score=30.34  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=20.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          138 LRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLK  172 (295)
Q Consensus       138 ~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~  172 (295)
                      .+..+..++..+++++++.+..++......+..++
T Consensus        81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~  115 (191)
T PF04156_consen   81 GELSELQQQLQQLQEELDQLQERIQELESELEKLK  115 (191)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666666666666666555555555544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=84.02  E-value=69  Score=34.85  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          112 LANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLK  172 (295)
Q Consensus       112 La~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~  172 (295)
                      +-.+.+.||-+++.+..+..-+-+++..-.+       +..+|+.|..-++..-.....|.
T Consensus       289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d-------~r~hi~~lkesl~~ke~~~~~Lq  342 (775)
T PF10174_consen  289 MDRLKLELSRKKSELEALQTRLETLEEQDSD-------MRQHIEVLKESLRAKEQEAEMLQ  342 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777776555544444444433332       23355555555444444444444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=84.01  E-value=36  Score=31.53  Aligned_cols=89  Identities=7%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             hhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCC-CCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHH
Q 022524          187 AQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGY-TPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALA  265 (295)
Q Consensus       187 ~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~-~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lA  265 (295)
                      ..++.-..+.+.|...+...+..|..+-.++...|. ....++..+..+-++...+.+.++       .. ++-+=...|
T Consensus        80 ~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr-------~r-~f~~~~~~A  151 (264)
T PF06008_consen   80 NNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR-------KR-DFTPQRQNA  151 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH-------hc-cchhHHHHH
Confidence            333444556777777778888888777766665555 345677777766555555554433       33 466777888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 022524          266 ALAIEDKKRQYAAAEKYL  283 (295)
Q Consensus       266 r~kiEear~EL~~Le~~l  283 (295)
                      -.++.+|..=|.++...|
T Consensus       152 e~El~~A~~LL~~v~~~~  169 (264)
T PF06008_consen  152 EDELKEAEDLLSRVQKWF  169 (264)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888888776

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.77  E-value=42  Score=32.21  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022524          230 VLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEK  281 (295)
Q Consensus       230 ~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~  281 (295)
                      .|.+..+...+++.++..++..++.-.+-  +    +.+|..++.++..|+.
T Consensus       245 ~i~~~~~~k~~l~~eI~e~~~~~~~~r~~--t----~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  245 KIEELEEQKQELLAEIAEAEKIREECRGW--T----RSEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHHHH
Confidence            34444444555555555555444433322  1    1234455555555544

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=83.39  E-value=65  Score=34.04  Aligned_cols=81  Identities=11%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhhhH-----HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhHhHHHHHH
Q 022524           72 DFRQKAAEYRSQA-----ARIREILENVGLAQESLPSNVVSSAQVLANVANLLN-IRDTELSSFLVAMGDISLRKTAVEE  145 (295)
Q Consensus        72 d~~~~~~ey~~ea-----~~l~~lLe~lgls~~sLs~~G~~aL~aLa~~A~~Lg-~~dts~~sl~~ai~~Lt~e~~~~e~  145 (295)
                      -+.....+|+...     .....+|-+.-..-++|+.-...+=+++.++...|+ .|||-|. |..+..-+.. ...++.
T Consensus        44 ~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pl-l~sa~~~l~k-~~~~~~  121 (629)
T KOG0963|consen   44 RLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPL-LASAAELLNK-QQKASE  121 (629)
T ss_pred             HHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchH-HHHHHHHhhh-hhhhhh
Confidence            5556667777431     222333322211136888888888899999998887 5777654 2222222222 222444


Q ss_pred             HHHHHHHHH
Q 022524          146 KRAKVQKES  154 (295)
Q Consensus       146 ~~~rl~~~i  154 (295)
                      .++++..++
T Consensus       122 e~~~lk~~l  130 (629)
T KOG0963|consen  122 ENEELKEEL  130 (629)
T ss_pred             hHHHHHHHH
Confidence            455444444

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=83.29  E-value=34  Score=30.68  Aligned_cols=103  Identities=15%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHH
Q 022524          153 ESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLV  232 (295)
Q Consensus       153 ~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~  232 (295)
                      +|..|+.+++.......+....++.|.+.+     .+++.|..+.-|+.-+++|+.|+.++++-         +.|=+=.
T Consensus        87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~L-----t~eemQe~i~~L~kev~~~~erl~~~k~g---------~~~vtpe  152 (201)
T KOG4603|consen   87 KIVALTEKVQSLQQTCSYVEAEIKELSSAL-----TTEEMQEEIQELKKEVAGYRERLKNIKAG---------TNHVTPE  152 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cccCCHH
Confidence            444444444444444444443444444332     23466677888888999999999888864         1222222


Q ss_pred             HHHHHH-------HHHHHhcHhHHHhhhhhc-CCCCCHHHHHHHHHHHHHHH
Q 022524          233 EMAEHR-------KELEKKTKPILDTLRSYQ-DLPPDKALAALAIEDKKRQY  276 (295)
Q Consensus       233 ~~~e~~-------~eL~~~~k~L~~kL~sy~-dLPpd~~lAr~kiEear~EL  276 (295)
                      +++.-+       .+++....--..-+..+. |+|-+.+       +..+||
T Consensus       153 dk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ks-------el~eel  197 (201)
T KOG4603|consen  153 DKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKS-------ELYEEL  197 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH-------HHHHHh
Confidence            333222       334444333333343333 7888887       555554

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=83.19  E-value=68  Score=34.13  Aligned_cols=27  Identities=7%  Similarity=0.201  Sum_probs=13.8

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 022524          131 VAMGDISLRKTAVEEKRAKVQKESKIL  157 (295)
Q Consensus       131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L  157 (295)
                      ..|.+++.++..++.++...+.+.+.+
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666665554444333344444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.58  E-value=39  Score=30.92  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=38.7

Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--------------chhhHHHHHHhHHHHHh
Q 022524          136 ISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP--------------CEAQMENWKTNLAVMAS  201 (295)
Q Consensus       136 Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~--------------~~~~~~~~~r~~k~L~a  201 (295)
                      +..++-++++....++..++.......+.=+....|.+.+..++.++..              .....++..|..+.|..
T Consensus         6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~   85 (237)
T PF00261_consen    6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN   85 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444444333333333333334444455555554421              11333444556666666


Q ss_pred             hHHHHHHHHHHHHHHhh
Q 022524          202 KERQYLQQYNNYKALLN  218 (295)
Q Consensus       202 K~~Ey~~ri~~le~~l~  218 (295)
                      +....-.||..++.++.
T Consensus        86 r~~~~eeri~~lE~~l~  102 (237)
T PF00261_consen   86 REQSDEERIEELEQQLK  102 (237)
T ss_dssp             HHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666655555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=82.35  E-value=6.4  Score=31.09  Aligned_cols=60  Identities=15%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             HhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524          194 TNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD  257 (295)
Q Consensus       194 r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d  257 (295)
                      ..++-+..|+..+++++...+..|.+..+    |.+.-..++++...++.+..+.+++|..-++
T Consensus         5 ~eId~lEekl~~cr~~le~ve~rL~~~eL----s~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk   64 (85)
T PF15188_consen    5 KEIDGLEEKLAQCRRRLEAVESRLRRREL----SPEARRSLEKELNELKEKLENNEKELKLLRK   64 (85)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHcccCC----ChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            45788999999999999999999887777    6678888888888888888888888776543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=81.86  E-value=68  Score=33.24  Aligned_cols=85  Identities=16%  Similarity=0.263  Sum_probs=64.2

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 022524          199 MASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAA  278 (295)
Q Consensus       199 L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~  278 (295)
                      ...++..|+..+..++..+..+++ |.++..-+    ..+.....++..|..+|..   -|=|+.....+++++...+..
T Consensus       416 Ar~kL~~~~~~L~~ikr~l~k~~l-pgip~~y~----~~~~~~~~~i~~l~~~L~~---g~VNm~ai~~e~~e~~~~~~~  487 (569)
T PRK04778        416 AREKLERYRNKLHEIKRYLEKSNL-PGLPEDYL----EMFFEVSDEIEALAEELEE---KPINMEAVNRLLEEATEDVET  487 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHH----HHHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHH
Confidence            455677777777777766666666 44442222    3345677888888888887   799999888899999999999


Q ss_pred             HHHHHHHHHHHhh
Q 022524          279 AEKYLEDVLHSAL  291 (295)
Q Consensus       279 Le~~l~~~~~~~~  291 (295)
                      +..+..+.+.++-
T Consensus       488 L~~q~~dL~~~a~  500 (569)
T PRK04778        488 LEEETEELVENAT  500 (569)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888764

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.45  E-value=1e+02  Score=35.03  Aligned_cols=10  Identities=30%  Similarity=0.345  Sum_probs=4.9

Q ss_pred             ccChHHHHHH
Q 022524           43 EYTSRSVAHL   52 (295)
Q Consensus        43 ErN~~Tl~~L   52 (295)
                      .+.+..+..|
T Consensus       774 ~~s~~~v~~l  783 (1293)
T KOG0996|consen  774 GVSKESVEKL  783 (1293)
T ss_pred             CCCHHHHHHH
Confidence            4455555544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.30  E-value=7.5  Score=33.64  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=42.3

Q ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcC
Q 022524          193 KTNLAVMASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQD  257 (295)
Q Consensus       193 ~r~~k~L~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~d  257 (295)
                      ...+.-|..++.+++..++.+++.|+...-.|     +..++...+..|..++..++.+|..+++
T Consensus        78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   78 DAEIKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566778888888888888877776554322     3445666777888888888888888774

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=81.11  E-value=89  Score=34.04  Aligned_cols=172  Identities=12%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             HHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHHHH
Q 022524          115 VANLLNIRDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAPCEAQMENWKT  194 (295)
Q Consensus       115 ~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~~~~~~~~~~r  194 (295)
                      +..-|.+..-....+-.-|--|.-++...++....++..++.|...+...-.-+.....++..++.+...+..-.....-
T Consensus       306 ~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d  385 (775)
T PF10174_consen  306 LQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRD  385 (775)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334333333334433344444444555555556666666665555555544444444444444443222222223333


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHH--------------hhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhc-CCC
Q 022524          195 NLAVMASKERQYLQQYNNYKAL--------------LNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQ-DLP  259 (295)
Q Consensus       195 ~~k~L~aK~~Ey~~ri~~le~~--------------l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~-dLP  259 (295)
                      ..+.-..|+..++.+|.+++..              +.+ ..+..-+...+..+++.+.+....+..|+..-..+. ..-
T Consensus       386 ~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~  464 (775)
T PF10174_consen  386 MLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQ  464 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444433              333 444444555556666555555544444443311111 111


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          260 PDKALAALAIEDKKRQYAAAEKYLEDVL  287 (295)
Q Consensus       260 pd~~lAr~kiEear~EL~~Le~~l~~~~  287 (295)
                      -....-+.++++++.++..|..+|.++-
T Consensus       465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~  492 (775)
T PF10174_consen  465 EELETYQKELKELKAKLESLQKELSEKE  492 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            2234455566666666666666665553

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11281 hypothetical protein; Provisional

Probab=80.78  E-value=1.1e+02  Score=34.80  Aligned_cols=58  Identities=14%  Similarity=0.064  Sum_probs=29.5

Q ss_pred             CCCchhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022524          122 RDTELSSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLE  179 (295)
Q Consensus       122 ~dts~~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~  179 (295)
                      +..+...+-..+.++..++.+.+......+.++-.+++...+..+.+..-...+.+++
T Consensus       119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~  176 (1113)
T PRK11281        119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR  176 (1113)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence            3444455555556666666666655555555555555544444444333333333333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.63  E-value=30  Score=32.06  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=22.7

Q ss_pred             cHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHH
Q 022524          227 SHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKA  263 (295)
Q Consensus       227 sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~  263 (295)
                      .-..+..++++|..|+.++-.+   .+.|.||+|=+.
T Consensus        79 ~~~~i~r~~eey~~Lk~~in~~---R~e~lgl~~Lp~  112 (230)
T PF10146_consen   79 RQEKIQRLYEEYKPLKDEINEL---RKEYLGLEPLPS  112 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCCc
Confidence            3456667778888888777666   455677776554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=80.45  E-value=85  Score=36.18  Aligned_cols=50  Identities=14%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          236 EHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLH  288 (295)
Q Consensus       236 e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~  288 (295)
                      +++.++.++++.+.+.+.   .-+.....++..++..++++...+.+..+...
T Consensus       333 ~eL~el~~ql~~~~~~a~---~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~  382 (1353)
T TIGR02680       333 EELERARADAEALQAAAA---DARQAIREAESRLEEERRRLDEEAGRLDDAER  382 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444333322   33444566777777777777777766655433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.28  E-value=82  Score=34.99  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=25.7

Q ss_pred             cchhhHHHHHHhHHHHHhhHHHHHHHHHH------HHHHhhhcCCC
Q 022524          184 PCEAQMENWKTNLAVMASKERQYLQQYNN------YKALLNRVGYT  223 (295)
Q Consensus       184 ~~~~~~~~~~r~~k~L~aK~~Ey~~ri~~------le~~l~~~g~~  223 (295)
                      .+....+...|.++.+.+++.+++.+|-+      +-.+|.+.+|+
T Consensus       414 eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknln  459 (1243)
T KOG0971|consen  414 ELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLN  459 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccC
Confidence            34455566677777788888888877743      23456666663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-09
 Identities = 62/316 (19%), Positives = 99/316 (31%), Gaps = 99/316 (31%)

Query: 25  KAWLASQFEASAKEVPAFEY---------TSRSVAHLYNLATLSQAKTKAANIVAADFRQ 75
           K W+A     S K     ++          +     L  L  L        N  +     
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHS 220

Query: 76  KAAEYRSQAA--RIREILENVGLAQESLPSNVVSSAQVLANVAN-------------LLN 120
              + R  +    +R +     L  +   + ++    VL NV N             LL 
Sbjct: 221 SNIKLRIHSIQAELRRL-----LKSKPYENCLL----VLLNVQNAKAWNAFNLSCKILLT 271

Query: 121 IRDTELSSFLVA--MGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQL 178
            R  +++ FL A     ISL              E K LL         L YL      L
Sbjct: 272 TRFKQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLL---------LKYLDCRPQDL 318

Query: 179 EDDVAPCEAQMENWKTN---LAVMASKERQYLQQYNNYKAL-LNRVGYTPEISHGVLVEM 234
                P E       TN   L+++A   R  L  ++N+K +  +++    E S  VL E 
Sbjct: 319 -----PREVL----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EP 368

Query: 235 AEHRKELEKKTKPILDTLRSYQDL---PPD-----KALAAL----------AIEDKKRQY 276
           AE+RK               +  L   PP        L+ +           + +K  +Y
Sbjct: 369 AEYRK--------------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 277 AAAEKYLED---VLHS 289
           +  EK  ++    + S
Sbjct: 415 SLVEKQPKESTISIPS 430

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 49/299 (16%), Positives = 91/299 (30%), Gaps = 85/299 (28%)

Query: 8   IDPPPTESRDAA-----RIADVKAWLASQFEA--------------SAKEVPAFEYTSRS 48
           IDP  T   D +     RI  ++A L    ++              +AK   AF  + + 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 49  VAHLYNLATLSQAKTKAANIVAADFRQKAAEYRSQAARIREILENVGLAQ-ESLPSNVVS 107
                 L T     T+   +   DF   A         I     ++ L   E        
Sbjct: 269 ------LLT-----TRFKQV--TDFLSAATTTH-----ISLDHHSMTLTPDEVK------ 304

Query: 108 SAQVLANVANLLNIRDTEL-------SSFLVAMGDI--SLR---------KTAVEEKRAK 149
              +L      L+ R  +L       +   +++  I  S+R         K    +K   
Sbjct: 305 --SLLLKY---LDCRPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTT 357

Query: 150 VQKESKILLDYTRKAIARLTYLKRTLGQLEDDVA-PCEAQMENWKTNLAVMASKERQYLQ 208
           + + S   L+    A  R  + +  L         P       W     V+ S     + 
Sbjct: 358 IIESS---LNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVN 409

Query: 209 QYNNYKALLNRVGYTPEIS-HGVLVEMAEHRKELEKKTKPILD---TLRSYQ--DLPPD 261
           + +   +L+ +      IS   + +E+    +      + I+D     +++   DL P 
Sbjct: 410 KLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.52
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.71
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.63
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.8
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	86.99
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	85.21
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.96

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.52  E-value=0.85  Score=40.91  Aligned_cols=29  Identities=3%  Similarity=-0.007  Sum_probs=15.4

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHHHHhhh
Q 022524          191 NWKTNLAVMASKERQYLQQYNNYKALLNR  219 (295)
Q Consensus       191 ~~~r~~k~L~aK~~Ey~~ri~~le~~l~~  219 (295)
                      +..+.++-+...+.+.+.+|..++.++.+
T Consensus        57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~   85 (256)
T 3na7_A           57 ALKLQVSKNEQTLQDTNAKIASIQKKMSE   85 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34444555555555555555555555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.71  E-value=0.13  Score=55.72  Aligned_cols=8  Identities=13%  Similarity=0.513  Sum_probs=3.7

Q ss_pred             HHHHHHhh
Q 022524           24 VKAWLASQ   31 (295)
Q Consensus        24 V~sWL~~~   31 (295)
                      +..|+..+
T Consensus       828 ~r~~~~~k  835 (1184)
T 1i84_S          828 VRSFMNVX  835 (1184)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            44455443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.63  E-value=1.8  Score=37.75  Aligned_cols=145  Identities=10%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc----ch-------hhHHHHHHhHHHH
Q 022524          131 VAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDVAP----CE-------AQMENWKTNLAVM  199 (295)
Q Consensus       131 ~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~~~----~~-------~~~~~~~r~~k~L  199 (295)
                      ..+-++..++.+-.+..++++.+++.-...+.|....+..   .+..|+.++..    +.       ......+..+..|
T Consensus        24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~---~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l  100 (189)
T 2v71_A           24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA---DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT  100 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555544444555544433   33444443321    11       1122223334444


Q ss_pred             HhhHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 022524          200 ASKERQYLQQYNNYKALLNRVGYTPEISHGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAA  279 (295)
Q Consensus       200 ~aK~~Ey~~ri~~le~~l~~~g~~~s~sh~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~L  279 (295)
                      ......|+.+|..++..+-..--...++..++..+...|....++..=|+..|..       ....+.++.++|.|++.|
T Consensus       101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-------Ke~l~~~~QRLkdE~rDL  173 (189)
T 2v71_A          101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-------KESLLVSVQRLKDEARDL  173 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCC----------
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            5555555555555543221100001135568888888888888888888888873       667778888888888888


Q ss_pred             HHHHHH
Q 022524          280 EKYLED  285 (295)
Q Consensus       280 e~~l~~  285 (295)
                      ..++.-
T Consensus       174 k~El~v  179 (189)
T 2v71_A          174 RQELAV  179 (189)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            877643

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.54  E-value=6.2  Score=39.35  Aligned_cols=91  Identities=7%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----ccchhhHHHHHHhHHHHHhh
Q 022524          127 SSFLVAMGDISLRKTAVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLGQLEDDV----APCEAQMENWKTNLAVMASK  202 (295)
Q Consensus       127 ~sl~~ai~~Lt~e~~~~e~~~~rl~~~i~~L~~~l~k~l~~~~~L~~~L~~L~~d~----~~~~~~~~~~~r~~k~L~aK  202 (295)
                      -+|...|++|..+++++++.+...+.-+..+-++|++.+.......+...++-.++    .-+...+.....|++.|..-
T Consensus        60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn  139 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN  139 (562)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778889999999888666665655666666677776666665554444443333    22445566666889999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 022524          203 ERQYLQQYNNYKALL  217 (295)
Q Consensus       203 ~~Ey~~ri~~le~~l  217 (295)
                      +++.+.+|..||...
T Consensus       140 Ledq~~kIQRLEvDI  154 (562)
T 3ghg_A          140 VRAQLVDMKRLEVDI  154 (562)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.80  E-value=14  Score=32.75  Aligned_cols=38  Identities=13%  Similarity=0.196  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhHhHHHHHHHHH
Q 022524          107 SSAQVLANVANLLNIRDTELSSFLVAMGDISLRKTAVEEKRA  148 (295)
Q Consensus       107 ~aL~aLa~~A~~Lg~~dts~~sl~~ai~~Lt~e~~~~e~~~~  148 (295)
                      ..|..|.++..+    |+....+.+.+-.+..++.+++....
T Consensus         5 ~~L~~L~~LQ~l----D~~i~~l~~~~~~lp~el~~le~~~~   42 (256)
T 3na7_A            5 THLKQLIEISHL----DKEIDSLEPLIREKRKDLDKALNDKE   42 (256)
T ss_dssp             HHHHHHHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344455544432    23334444444444444444443333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=86.99  E-value=3  Score=45.20  Aligned_cols=7  Identities=0%  Similarity=-0.035  Sum_probs=3.4

Q ss_pred             HHHHHHh
Q 022524           24 VKAWLAS   30 (295)
Q Consensus        24 V~sWL~~   30 (295)
                      +..+|..
T Consensus       752 ~~~lL~~  758 (1184)
T 1i84_S          752 CILMIKA  758 (1184)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            3455554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.21  E-value=17  Score=35.34  Aligned_cols=52  Identities=6%  Similarity=0.060  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHhcHhHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022524          228 HGVLVEMAEHRKELEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHS  289 (295)
Q Consensus       228 h~~l~~~~e~~~eL~~~~k~L~~kL~sy~dLPpd~~lAr~kiEear~EL~~Le~~l~~~~~~  289 (295)
                      .+.+.++.+.+..+++++..++.+++          ..+..+++.++|...++.++.+..+.
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~le~~~~----------~~~~~~~~l~~e~~~~~~~~~~l~~~  580 (597)
T 3oja_B          529 RTEADAKQKETEDLEQENIALEKQLD----------NKRAKQAELRQETSLKRQKVKQLEAK  580 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhcchhhHHhhhHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566677777777777777764          34566677777777777777666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.96  E-value=36  Score=33.05  Aligned_cols=28  Identities=11%  Similarity=0.165  Sum_probs=9.9

Q ss_pred             HHHHHHHHhcHhHHHhhhhhc-CCCCCHH
Q 022524          236 EHRKELEKKTKPILDTLRSYQ-DLPPDKA  263 (295)
Q Consensus       236 e~~~eL~~~~k~L~~kL~sy~-dLPpd~~  263 (295)
                      +.+.+++++...++.+++... .++-|++
T Consensus       558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          558 AKQAELRQETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            344444444444444444333 3444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00