Citrus Sinensis ID: 022555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MSSKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHccccEEEcccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHcccccEEEccccccccccccccccEEEEcccccEEEEccccccccccccccccccccccEEEEEccHHHHHHcccccccccHHHHcHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccEEccEEHHHHHHHHHcccccccEEEEEEccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHccccHEEEEEccccHHHHcccccEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mssksicspsesssstksWIVHGIVAGAAIAVAVGARAylgrsknfrsRVVGIiparfassrfegkplvnilgkpmiqrTWERSKLATTLDHLVVATDDEKIAECCQQFGadvimtsescrngTERCNEALQKLEKKYDIVVNiqgdepliepeIIDGVVKALQAAPDAVFSTAVtslkpedafdpnrvkcvvdnhgyaiyfsrglipynksgkvnpqfpyllhlgiqsydsnflkiypglhptplqlEEDLEQLKVLENGYKMKVIKvdheahgvdapedvEKIESFMRERNLS
Flexible Loop (DISEMBL)
mssksicspsesssstkSWIVHGIVAGAAIAVAVGARAYlgrsknfrsrVVGIIparfassrfegkplvnilgkpmiqRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTslkpedafdpnrvKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVdheahgvdapedvekIESFMRERNLS
Low Complexity Region (SEG)
MssksicspsesssstksWivhgivagaaiavavgaraYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Disordered region (IsUnstruct)
******************WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE***********************
Disordered Region (DISOPRED)
********************VHGIVAGAAIAVAVG**********FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER***
Disordered Region (DISEMBL)
*****************SWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES********
Disordered Region (DISPRO)
**************STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER***
Transmembrane Helix (TMHMM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9C920	290	3-deoxy-manno-octulosonat	yes	no	0.945	0.962	0.881	1e-141
Q6MD00	259	3-deoxy-manno-octulosonat	yes	no	0.830	0.945	0.487	3e-58
Q9PKL1	254	3-deoxy-manno-octulosonat	yes	no	0.803	0.933	0.461	6e-53
A6L9D4	251	3-deoxy-manno-octulosonat	yes	no	0.816	0.960	0.440	7e-53
Q8RFA8	245	3-deoxy-manno-octulosonat	yes	no	0.816	0.983	0.437	2e-52
B0BBG2	254	3-deoxy-manno-octulosonat	yes	no	0.803	0.933	0.453	4e-52
B0B9T2	254	3-deoxy-manno-octulosonat	yes	no	0.803	0.933	0.453	4e-52
P0CD75	254	3-deoxy-manno-octulosonat	yes	no	0.803	0.933	0.453	5e-52
Q3KMI0	254	3-deoxy-manno-octulosonat	yes	no	0.803	0.933	0.453	5e-52
A5G5T4	251	3-deoxy-manno-octulosonat	yes	no	0.793	0.932	0.437	8e-52

>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1

 Score =  499 bits (1286), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/279 (88%), Positives = 261/279 (93%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12  KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191

Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
           GYAIYFSRGLIPYNKSGKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLK
Sbjct: 192 GYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLK 251

Query: 257 VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           VLENGYKMKVIKVDHEAHGVD P+DVEKIES MRERN+S
Sbjct: 252 VLENGYKMKVIKVDHEAHGVDTPDDVEKIESLMRERNMS 290

Catalyzes the production of the sugar nucleotide CMP-3-deoxy-D-manno-octulosonate (CMP-KDO). CTP is the preferred nucleotide donor, but it can partially be replaced with UTP. Activates KDO during the biosynthesis of rhamnogalacturonan II (RG-II), a structurally complex pectic polysaccharide of the primary cell wall. RG-II is essential for the cell wall integrity of rapidly growing tissues and pollen tube growth and elongation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 3EC: 8

>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/248 (48%), Positives = 159/248 (64%), Gaps = 3/248 (1%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           +++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S  A+ L  L+VATDDE+I E  + 
Sbjct: 9   QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRS 68

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
           F   V+MTSE C  GT+R  E L    +      +VNIQGDEP + P  I+  V+AL   
Sbjct: 69  FNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVND 128

Query: 167 PDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
           P    ST VT L   E+A + + VKCV+D  G A+YFSR LIP NK+        Y  HL
Sbjct: 129 PQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHL 188

Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
           G+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  VD    GVD PED+ K+
Sbjct: 189 GLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHKV 248

Query: 286 ESFMRERN 293
           E ++ ++N
Sbjct: 249 EEWLCKQN 256

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Protochlamydia amoebophila (strain UWE25) (taxid: 264201)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2

 Score =  207 bits (527), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 157/245 (64%), Gaps = 8/245 (3%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+PAR+ SSRF GKPL  ILGK +IQR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MT ESC NGTER  EA+ +   + +IVVNIQGDEP + P IIDG+V+ L+  P
Sbjct: 67  EFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
               +T VT ++ P+     ++VKCV D  G A+YFSR +IP N         P  LH+G
Sbjct: 127 AIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNFKRST----PIYLHIG 182

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
           + ++   FL  Y  + P+ L L EDLEQL+VLE+G  + V  V   A G  VD PED+ K
Sbjct: 183 VYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYV-HVVQNATGPSVDYPEDISK 241

Query: 285 IESFM 289
           +E ++
Sbjct: 242 VEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1

 Score =  207 bits (527), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/252 (44%), Positives = 156/252 (61%), Gaps = 11/252 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K    LD + VATDD +I    + 
Sbjct: 3   KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG  V+MTS+  R+GT+RC EA QK+ + YD++VNIQGDEP I PE I   +K   A  +
Sbjct: 61  FGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADAN 119

Query: 169 AVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--- 220
              +T V   + +D      F+PN  K V++ +  A+YFSR +IPY +  K     P   
Sbjct: 120 TQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPYIRGKKYTEWLPSHT 179

Query: 221 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE 280
           +  H+G+ +Y +  LK    L  + L+L E LEQL+ LENGYK+KV   + E  G+D PE
Sbjct: 180 FYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKVGITEQETIGIDTPE 239

Query: 281 DVEKIESFMRER 292
           D+EK  +F+  R
Sbjct: 240 DMEKALAFLANR 251

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 157/247 (63%), Gaps = 6/247 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + +GIIPAR++S+R EGKPL  I G  MI+  ++R+K  + LD L+VATDDE+I      
Sbjct: 2   KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVIN 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG   IMTS++  NGT R  E  +K+  +YD ++NIQGDEPLIE E+I+ +++  +   D
Sbjct: 61  FGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLIEYEMINSLIETFKENKD 119

Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
              +T    L   E+  +PN VK V D + YAIYFSR +IPY +    N    Y  H+GI
Sbjct: 120 LKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGI 176

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
             Y  +F+  Y  +  TPL+  E LEQL+VLENGYK+KV++  H   GVD  E++E++ +
Sbjct: 177 YGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETTHSLIGVDTQENLEQVIN 236

Query: 288 FMRERNL 294
           +++E N+
Sbjct: 237 YIKENNI 243

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB PE=3 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 154/245 (62%), Gaps = 8/245 (3%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
            A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
           + ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V   A G  VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQNATGPSVDYPEDITK 241

Query: 285 IESFM 289
           +E ++
Sbjct: 242 VEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 154/245 (62%), Gaps = 8/245 (3%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
            A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
           + ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V   A G  VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYV-HVVQNATGPSVDYPEDITK 241

Query: 285 IESFM 289
           +E ++
Sbjct: 242 VEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 155/245 (63%), Gaps = 8/245 (3%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
            A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
           + ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V   A G  VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQNATGPSVDYPEDITK 241

Query: 285 IESFM 289
           +E ++
Sbjct: 242 VEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) GN=kdsB PE=3 SV=1

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 155/245 (63%), Gaps = 8/245 (3%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ VGI+P+R+ SSRF GKPL  ILGK ++QR++E +  + +LD +VVATDD++I +   
Sbjct: 7   SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           +FG   +MTS SC NGTER  E + +   + +IVVNIQGDEP + P +IDG+V  L+  P
Sbjct: 67  EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126

Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
            A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--VDAPEDVEK 284
           + ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V   A G  VD PED+ K
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYV-HVVQNATGPSVDYPEDITK 241

Query: 285 IESFM 289
           +E ++
Sbjct: 242 VEQYL 246

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) (taxid: 315277)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

>sp|A5G5T4|KDSB_GEOUR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1

 Score =  204 bits (518), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 13/247 (5%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           ++  IIPAR+AS+RFEGK L +I+GKPM+Q  +ER+  A+ +  ++VATDDE+IA     
Sbjct: 2   KITAIIPARYASTRFEGKALADIMGKPMVQHVYERTAKASLVSEVIVATDDERIAAAVHA 61

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG    MTS     GT+R  E   +L+   DI+VN+QGDEPLIEP +ID  +K L     
Sbjct: 62  FGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDEPLIEPAMIDEAIKPLAEDSS 119

Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------Q 218
            +  T  T +K   D   PN VK V D  GYA+YFSR  +P N   K N          +
Sbjct: 120 VMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFASRK 178

Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
                H+G+  Y  +FL  +  + PT L++ E LEQL+VLENGY++KV++ D+E+ GVD 
Sbjct: 179 LLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDYESIGVDT 238

Query: 279 PEDVEKI 285
           P D+EK+
Sbjct: 239 PGDLEKV 245

Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.

Geobacter uraniireducens (strain Rf4) (taxid: 351605)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
255552475	294	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.935	0.938	0.894	1e-147
449431840	297	PREDICTED: 3-deoxy-manno-octulosonate cy	0.952	0.946	0.864	1e-143
255587342	290	cmp-2-keto-3-deoctulosonate (cmp-kdo) cy	0.935	0.951	0.873	1e-142
224114948	293	predicted protein [Populus trichocarpa]	0.949	0.955	0.9	1e-140
225461429	297	PREDICTED: 3-deoxy-manno-octulosonate cy	0.952	0.946	0.876	1e-139
30695393	290	3-deoxy-manno-octulosonate cytidylyltran	0.945	0.962	0.881	1e-139
224128153	288	predicted protein [Populus trichocarpa]	0.945	0.968	0.878	1e-138
356514754	305	PREDICTED: 3-deoxy-manno-octulosonate cy	0.955	0.924	0.886	1e-138
356543296	306	PREDICTED: 3-deoxy-manno-octulosonate cy	0.952	0.918	0.886	1e-138
297853072	293	cytidylyltransferase family [Arabidopsis	0.945	0.952	0.881	1e-137

>gi|255552475|ref|XP_002517281.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223543544|gb|EEF45074.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/276 (89%), Positives = 261/276 (94%)

Query: 19  WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQ 78
           WIVH IVAGAAIAV +GARAYL RS+ FRSRV+GIIPARFASSRF+GKPLV ILGKPMIQ
Sbjct: 18  WIVHSIVAGAAIAVGIGARAYLSRSRKFRSRVIGIIPARFASSRFQGKPLVQILGKPMIQ 77

Query: 79  RTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY 138
           RTWER+KLATTLDH++VATDDEKIAECC+ FGADVIMTSESCRNGTERCNEA+ KLEKKY
Sbjct: 78  RTWERAKLATTLDHIIVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEAIGKLEKKY 137

Query: 139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198
           D+VVNIQGDEPLIEPEIIDG+VKALQ APDAVFSTAVTSLKPEDAFDPNRVKCVVDN GY
Sbjct: 138 DVVVNIQGDEPLIEPEIIDGIVKALQEAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNQGY 197

Query: 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL 258
           AIYFSRGLIPYNKSGK+NPQFPYLLHLGIQSYD+ FLKIYP L PTPLQLEEDLEQLKVL
Sbjct: 198 AIYFSRGLIPYNKSGKINPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQLKVL 257

Query: 259 ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNL 294
           ENGYKMKVIKVDHEAHGVDAPEDVEKIE  MRE N+
Sbjct: 258 ENGYKMKVIKVDHEAHGVDAPEDVEKIERLMREHNV 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431840|ref|XP_004133708.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Cucumis sativus]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/281 (86%), Positives = 263/281 (93%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGK 74
           S K+WIVHGIVAG AI  A GAR+YLGRSK FRSRVVGIIPARFASSRFEGKPLV ILGK
Sbjct: 17  SAKAWIVHGIVAGIAIGAAFGARSYLGRSKKFRSRVVGIIPARFASSRFEGKPLVEILGK 76

Query: 75  PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134
           PMIQRTWER+K+ATTLD +VVATDD +IA+CC+ FGADV+MTSESCRNGTERCNEALQKL
Sbjct: 77  PMIQRTWERAKMATTLDCVVVATDDARIAQCCKGFGADVVMTSESCRNGTERCNEALQKL 136

Query: 135 EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 194
           EKKYDIVVNIQGDEPLIEPEIIDG+VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD
Sbjct: 137 EKKYDIVVNIQGDEPLIEPEIIDGIVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 196

Query: 195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQ 254
           + GYAIYFSRGLIP+NKSGKVN Q+PYLLHLGIQS+DS FL +YP L  TPLQLEEDLEQ
Sbjct: 197 SRGYAIYFSRGLIPFNKSGKVNLQYPYLLHLGIQSFDSKFLSMYPELESTPLQLEEDLEQ 256

Query: 255 LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           LKVLE+GYKMKVIKV+HEAHGVD PEDV+KIESFM+ERNL+
Sbjct: 257 LKVLEHGYKMKVIKVEHEAHGVDVPEDVDKIESFMKERNLA 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587342|ref|XP_002534236.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis] gi|223525656|gb|EEF28143.1| cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/276 (87%), Positives = 257/276 (93%)

Query: 19  WIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQ 78
           WIVH IVAGAAIAV VGA AYLGR + FR RV+GIIPARF SSRF+GKPLV+ILGKPMIQ
Sbjct: 14  WIVHSIVAGAAIAVGVGAGAYLGRFRKFRRRVIGIIPARFDSSRFQGKPLVHILGKPMIQ 73

Query: 79  RTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKY 138
           RTWER+KLATTLDH++VATD+EKIAECC+ FGADVIMTSESCRNGTERCNEAL KLEKKY
Sbjct: 74  RTWERAKLATTLDHIIVATDNEKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKY 133

Query: 139 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198
           D+VVNIQGDEPLIEP IIDG+VKALQAAP+AVFSTAVTSLKPEDAFDPNRVKCVVDN GY
Sbjct: 134 DVVVNIQGDEPLIEPVIIDGIVKALQAAPNAVFSTAVTSLKPEDAFDPNRVKCVVDNQGY 193

Query: 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL 258
           AIYFSRGL+PYNKSGKVN QFPYLLHLGIQSYD+ FLKIY  L PTPLQLEEDLEQLKVL
Sbjct: 194 AIYFSRGLVPYNKSGKVNAQFPYLLHLGIQSYDAKFLKIYSELQPTPLQLEEDLEQLKVL 253

Query: 259 ENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNL 294
           ENGYKMKVIKVDHEAHGVD PED+EKIE  MRERN+
Sbjct: 254 ENGYKMKVIKVDHEAHGVDTPEDIEKIERLMRERNV 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114948|ref|XP_002316900.1| predicted protein [Populus trichocarpa] gi|222859965|gb|EEE97512.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/280 (90%), Positives = 268/280 (95%)

Query: 16  TKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKP 75
           T+SWIVHGIVAGAAIA A+GA AYL R + FRS+VVGIIPAR+ASSRFEGKPLVNILGKP
Sbjct: 14  TRSWIVHGIVAGAAIAAAIGAGAYLVRYRKFRSQVVGIIPARYASSRFEGKPLVNILGKP 73

Query: 76  MIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE 135
           MIQRTWER+KLATTLDH+VVATDDEKIAECC+ FGADV+MTSESCRNGTERCNEALQKL+
Sbjct: 74  MIQRTWERAKLATTLDHIVVATDDEKIAECCRGFGADVVMTSESCRNGTERCNEALQKLD 133

Query: 136 KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 195
           KKYD+VVNIQGDEPLIEPEIIDG+VK+LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN
Sbjct: 134 KKYDVVVNIQGDEPLIEPEIIDGIVKSLQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN 193

Query: 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL 255
            GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYD+ FLKIYP L PTPLQLEEDLEQL
Sbjct: 194 QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELQPTPLQLEEDLEQL 253

Query: 256 KVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           KVLENGYKMKVIKVDHEAHGVD PEDVEKIE+ MRE+NLS
Sbjct: 254 KVLENGYKMKVIKVDHEAHGVDIPEDVEKIETLMREQNLS 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461429|ref|XP_002284913.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase [Vitis vinifera] gi|302143017|emb|CBI20312.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/283 (87%), Positives = 267/283 (94%), Gaps = 2/283 (0%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYL--GRSKNFRSRVVGIIPARFASSRFEGKPLVNIL 72
           +TK+WI+HGI+ GAA+AVA+GA AYL   RS  FRSRVVGIIPARFASSRF+GKPLV IL
Sbjct: 15  TTKAWIIHGILTGAAVAVALGAHAYLLLRRSGKFRSRVVGIIPARFASSRFQGKPLVQIL 74

Query: 73  GKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQ 132
           GKPMIQRTWER+KLATTLDH+VVATDD+KIA+CC+ FGADVIMTSESCRNGTERCNEALQ
Sbjct: 75  GKPMIQRTWERAKLATTLDHVVVATDDDKIADCCRGFGADVIMTSESCRNGTERCNEALQ 134

Query: 133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV 192
           KLEK+YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED FDPNRVKC+
Sbjct: 135 KLEKQYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDGFDPNRVKCI 194

Query: 193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDL 252
           VDN GYAIYFSRGLIP+NKSG+VN QFPYLLHLGIQSYD+ FL+IYP L PTPLQLEEDL
Sbjct: 195 VDNRGYAIYFSRGLIPFNKSGEVNQQFPYLLHLGIQSYDTKFLRIYPDLPPTPLQLEEDL 254

Query: 253 EQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           EQLKVLENGYKMKVIKVDHEAHGVD PEDV+KIESFMRERNLS
Sbjct: 255 EQLKVLENGYKMKVIKVDHEAHGVDTPEDVDKIESFMRERNLS 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695393|ref|NP_175708.2| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana] gi|12324630|gb|AAG52266.1|AC019018_3 putative deoxyoctulonosic acid synthetase; 116195-114393 [Arabidopsis thaliana] gi|22213935|emb|CAD43603.1| putative CMP-KDO synthetase [Arabidopsis thaliana] gi|222424524|dbj|BAH20217.1| AT1G53000 [Arabidopsis thaliana] gi|332194754|gb|AEE32875.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Arabidopsis thaliana]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/279 (88%), Positives = 261/279 (93%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12  KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191

Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
           GYAIYFSRGLIPYNKSGKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLK
Sbjct: 192 GYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLK 251

Query: 257 VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           VLENGYKMKVIKVDHEAHGVD P+DVEKIES MRERN+S
Sbjct: 252 VLENGYKMKVIKVDHEAHGVDTPDDVEKIESLMRERNMS 290

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128153|ref|XP_002329094.1| predicted protein [Populus trichocarpa] gi|222869763|gb|EEF06894.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/279 (87%), Positives = 263/279 (94%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K WIVH IVAGAAIA A+GA AYLGR + FRSRVVGIIPAR+ASSRFEGKPLVNILGKPM
Sbjct: 10  KFWIVHSIVAGAAIAAAIGAGAYLGRYRKFRSRVVGIIPARYASSRFEGKPLVNILGKPM 69

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWER+KLA+TLDH+VVATDDEKIAECC+ FGADVIMTSESCRNGTERCNEALQKL+K
Sbjct: 70  IQRTWERAKLASTLDHIVVATDDEKIAECCRGFGADVIMTSESCRNGTERCNEALQKLDK 129

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIID +VKALQAAPDAVFSTAVT+LKPEDAFDPNRVKCVVDNH
Sbjct: 130 KYDVVVNIQGDEPLIEPEIIDRIVKALQAAPDAVFSTAVTALKPEDAFDPNRVKCVVDNH 189

Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
           GYAIYFSRGLIPYNK+GKVN QFPY+LHLGIQSYD+ FLKIYP L  TPLQLEEDLEQLK
Sbjct: 190 GYAIYFSRGLIPYNKTGKVNTQFPYMLHLGIQSYDTKFLKIYPELRSTPLQLEEDLEQLK 249

Query: 257 VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           VLENGYKMKVIKVDHEAHGVD PEDVEK+E+ MRE++ S
Sbjct: 250 VLENGYKMKVIKVDHEAHGVDIPEDVEKLETLMREQSFS 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514754|ref|XP_003526068.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/282 (88%), Positives = 261/282 (92%)

Query: 14  SSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILG 73
           ++ K+WI+HGIVAG AIA AVGARAY+ R   FRSRVVGIIPARFASSRFEGKPLV ILG
Sbjct: 24  NTAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFEGKPLVQILG 83

Query: 74  KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQK 133
           KPMIQRTWER+KLA TLDH+VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQK
Sbjct: 84  KPMIQRTWERAKLAATLDHVVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQK 143

Query: 134 LEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV 193
           L KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVV
Sbjct: 144 LGKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVV 203

Query: 194 DNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE 253
           DN GYAIYFSRGLIP+NKSGKVN QFPYLLHLGIQSYD+ FL IYP L PTPLQLEEDLE
Sbjct: 204 DNRGYAIYFSRGLIPFNKSGKVNQQFPYLLHLGIQSYDAKFLNIYPNLRPTPLQLEEDLE 263

Query: 254 QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           QLKVLENGYKMKVIKV HEAHGVD PEDV KIES MRERNLS
Sbjct: 264 QLKVLENGYKMKVIKVHHEAHGVDTPEDVGKIESLMRERNLS 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543296|ref|XP_003540098.1| PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/281 (88%), Positives = 260/281 (92%)

Query: 15  STKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGK 74
           + K+WI+HGIVAG AIA AVGARAY+ R   FRSRVVGIIPARFASSRF+GKPLV ILGK
Sbjct: 26  TAKAWIIHGIVAGVAIAAAVGARAYMTRFSKFRSRVVGIIPARFASSRFQGKPLVQILGK 85

Query: 75  PMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL 134
           PMIQRTWER+KLA TLDH+VVATDDEKIA+CC+QFGADVIMTSESCRNGTERCNEALQKL
Sbjct: 86  PMIQRTWERAKLAATLDHIVVATDDEKIADCCRQFGADVIMTSESCRNGTERCNEALQKL 145

Query: 135 EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVD 194
            KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA DPNRVKCVVD
Sbjct: 146 GKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAHDPNRVKCVVD 205

Query: 195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQ 254
           N GYAIYFSRGLIP+NKSG VN QFPYLLHLGIQSYD+ FL IYP L PTPLQLEEDLEQ
Sbjct: 206 NRGYAIYFSRGLIPFNKSGMVNQQFPYLLHLGIQSYDAKFLNIYPDLQPTPLQLEEDLEQ 265

Query: 255 LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           LKVLENGYKMKVIKVDHEAHGVD PEDV KIES MRERNLS
Sbjct: 266 LKVLENGYKMKVIKVDHEAHGVDTPEDVGKIESLMRERNLS 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853072|ref|XP_002894417.1| cytidylyltransferase family [Arabidopsis lyrata subsp. lyrata] gi|297340259|gb|EFH70676.1| cytidylyltransferase family [Arabidopsis lyrata subsp. lyrata]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/279 (88%), Positives = 261/279 (93%)

Query: 17  KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
           K+WIVHGI+AGAAIA A+GA AYLGRS+ FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 15  KTWIVHGILAGAAIAAAIGASAYLGRSRKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 74

Query: 77  IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
           IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KL+K
Sbjct: 75  IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLDK 134

Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
           KYD+VVNIQGDEPLIEPEIIDGVVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN 
Sbjct: 135 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 194

Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
           GYAIYFSRGLIPYNKSGKVNP FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLK
Sbjct: 195 GYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLK 254

Query: 257 VLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           VLENGYKMKVIKVDHEAHGVD P+DVEKIES MRERNLS
Sbjct: 255 VLENGYKMKVIKVDHEAHGVDTPDDVEKIESLMRERNLS 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2037015	290	CKS "CMP-KDO synthetase" [Arab	0.871	0.886	0.894	1.7e-123
TIGR_CMR|GSU_1896	250	GSU_1896 "3-deoxy-D-manno-octu	0.793	0.936	0.424	1.9e-44
UNIPROTKB|Q9KQX2	252	kdsB "3-deoxy-manno-octulosona	0.806	0.944	0.425	2.8e-43
TIGR_CMR|SO_2478	245	SO_2478 "3-deoxy-D-manno-octul	0.779	0.938	0.424	2.8e-43
TIGR_CMR|VC_1875	252	VC_1875 "3-deoxy-manno-octulos	0.806	0.944	0.425	2.8e-43
UNIPROTKB|P04951	248	kdsB "3-deoxy-D-manno-octuloso	0.810	0.963	0.414	7.5e-41
TIGR_CMR|CPS_2128	280	CPS_2128 "3-deoxy-D-manno-octu	0.803	0.846	0.389	8e-37
TIGR_CMR|CJE_0904	239	CJE_0904 "3-deoxy-D-manno-octu	0.766	0.945	0.374	4.4e-36
TIGR_CMR|CBU_0479	249	CBU_0479 "3-deoxy-D-manno-octu	0.796	0.943	0.372	5.1e-35
TIGR_CMR|SPO_0038	266	SPO_0038 "3-deoxy-D-manno-octu	0.810	0.898	0.375	8.3e-35

TAIR|locus:2037015 CKS "CMP-KDO synthetase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 230/257 (89%), Positives = 241/257 (93%)

Query:    39 YLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD 98
             YLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPMIQRTWERSKLATTLDH+VVATD
Sbjct:    34 YLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPMIQRTWERSKLATTLDHIVVATD 93

Query:    99 DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
             DE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEKKYD+VVNIQGDEPLIEPEIIDG
Sbjct:    94 DERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIEPEIIDG 153

Query:   159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ 218
             VVKALQ  PDAVFSTAVTSLKPED  DPNRVKCVVDN GYAIYFSRGLIPYNKSGKVNP 
Sbjct:   154 VVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNPD 213

Query:   219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA 278
             FPY+LHLGIQS+DS FLK+Y  L PTPLQ EEDLEQLKVLENGYKMKVIKVDHEAHGVD 
Sbjct:   214 FPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHEAHGVDT 273

Query:   279 PEDVEKIESFMRERNLS 295
             P+DVEKIES MRERN+S
Sbjct:   274 PDDVEKIESLMRERNMS 290

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0009103 "lipopolysaccharide biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|GSU_1896 GSU_1896 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 104/245 (42%), Positives = 148/245 (60%)

Query:    50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
             +  IIPARFAS+RF GK L +I GKPM+Q  +ER+  A  +  +VVATDD++IA+  + F
Sbjct:     3 ITAIIPARFASTRFPGKALADIAGKPMVQHVYERTARARLVSEVVVATDDDRIAQAVRGF 62

Query:   110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
             G  V MTS     GT+R  E   ++    +I+VN+QGDEPLIEP +ID  +  L   P  
Sbjct:    63 GGRVEMTSRDHETGTDRLAEVASRIGA--EIIVNVQGDEPLIEPAMIDEAIAPLAENPAV 120

Query:   170 VFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPY--NKSGKVNPQ-FPY--LL 223
                T  + ++   D   PN VK V D  GYA+YFSR  +P+  +K   +  + F    LL
Sbjct:   121 RMGTLKSRIRTLHDFLSPNVVKVVTDLEGYALYFSRSPLPFFRDKWNDLKDESFASGRLL 180

Query:   224 ---HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE 280
                H+G+  Y  +FL  +  + PT L+L E LEQL+ LENG +++V++  HE+ GVD P 
Sbjct:   181 CYKHVGLYVYRRDFLMEFAKMPPTALELAEKLEQLRALENGCRIRVVETAHESIGVDTPN 240

Query:   281 DVEKI 285
             D+EK+
Sbjct:   241 DLEKV 245

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

UNIPROTKB|Q9KQX2 kdsB "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 105/247 (42%), Positives = 150/247 (60%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct:     6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L AA  A  
Sbjct:    65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123

Query:   172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KVNPQF--PYLLHLG 226
             +T    ++ E + F+PN VK + D  GYA+YFSR  IP+++    K +     P L H+G
Sbjct:   124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIG 183

Query:   227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 285
             I +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +
Sbjct:   184 IYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVV 243

Query:   286 ESFMRER 292
                + ER
Sbjct:   244 RRIVAER 250

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|SO_2478 SO_2478 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 101/238 (42%), Positives = 141/238 (59%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ SSRF GKPL  I GKPMIQ  +ER+ LA  L ++ VATDDE+I    + FG  
Sbjct:     6 LIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGFGGK 65

Query:   113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V+MTS    +GT+R N+A+ +L  K  D+V+N+QGD+PLI+P  I+ V+   +  P   F
Sbjct:    66 VVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHPGE-F 124

Query:   172 STAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ 228
               A      +   +  DP  VK V DN  YA+YFSR  IP+ +  K    +P   HLG+ 
Sbjct:   125 EMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIPFGRDTK---DYPVYKHLGVY 181

Query:   229 SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 286
             +Y   F++ +  L    L+  E LEQL+ LE G+K+KV     ++  VD PED+ K E
Sbjct:   182 AYTRRFVQAFAALPLGRLEDLEKLEQLRALEYGHKIKVAISAFDSIEVDTPEDIRKCE 239

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|VC_1875 VC_1875 "3-deoxy-manno-octulosonate cytidylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 105/247 (42%), Positives = 150/247 (60%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct:     6 VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L AA  A  
Sbjct:    65 VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AACSAPM 123

Query:   172 STAVTSLKPE-DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--KVNPQF--PYLLHLG 226
             +T    ++ E + F+PN VK + D  GYA+YFSR  IP+++    K +     P L H+G
Sbjct:   124 ATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIG 183

Query:   227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 285
             I +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +
Sbjct:   184 IYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVV 243

Query:   286 ESFMRER 292
                + ER
Sbjct:   244 RRIVAER 250

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

UNIPROTKB|P04951 kdsB "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 102/246 (41%), Positives = 145/246 (58%)

Query:    51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
             V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G
Sbjct:     4 VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62

Query:   111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
              +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      
Sbjct:    63 GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 122

Query:   170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHL 225
             + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HL
Sbjct:   123 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHL 182

Query:   226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEK 284
             GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E+
Sbjct:   183 GIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLER 242

Query:   285 IESFMR 290
             + + MR
Sbjct:   243 VRAEMR 248

GO:0033468 "CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IEA

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CPS_2128 CPS_2128 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 100/257 (38%), Positives = 146/257 (56%)

Query:    51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
             V +IPAR+ SSR  GK L +I GKPMIQ   E+++L+     ++VATD++++A     FG
Sbjct:    20 VVVIPARYQSSRLPGKVLADIDGKPMIQWVVEKAQLSGARQ-VIVATDNDEVAAVVNSFG 78

Query:   111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKAL----QA 165
             A+V  T    ++GTER  E ++K +   D I+VN+QGDEP I P+ I  V   L    Q+
Sbjct:    79 AEVCKTRADHQSGTERLAEVMEKYQFSDDEIIVNVQGDEPFIPPDNIAQVANNLANQQQS 138

Query:   166 APDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP---- 220
             +  A  ST   ++   D AF+PN VK ++D  GYA+YFSR  IPY++   +N        
Sbjct:   139 SHVARMSTLAINIDSVDEAFNPNAVKVILDKDGYALYFSRATIPYDRERFLNSDATTEEN 198

Query:   221 -------YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDH- 271
                    YL H+GI +Y + F+K Y     + L+  E LEQL+VL  G ++ V +   H 
Sbjct:   199 IRAIGDFYLRHVGIYAYRAGFIKDYVNWPTSELEQVEALEQLRVLYQGERIHVAVANSHV 258

Query:   272 EAHGVDAPEDVEKIESF 288
                GVD PED+ K  ++
Sbjct:   259 PVEGVDTPEDLAKARAY 275

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0904 CJE_0904 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 88/235 (37%), Positives = 136/235 (57%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             IIPAR  SSRF  K L ++ G PM   T  R    +++D + +A DDEK+    +++G +
Sbjct:     3 IIPARLKSSRFHEKILCDVGGVPMFVATARR---VSSVDEVCIALDDEKVLSIAKEYGLN 59

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD--A 169
              ++TS++  +GT+R NEA +KL  K D I++N+Q DEP IE E +    +   +  D  A
Sbjct:    60 AVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECENLLKFKEFASSCLDKKA 119

Query:   170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
               ++    +  E+A D N VK + D  GYA+YFSR  IPY +    N +  +  HLGI +
Sbjct:   120 FMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYERE---NYEESFKGHLGIYA 176

Query:   230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 284
             Y    L+ +  L  + L+  E LEQL+ +ENG K+K++++   + G+D  ED EK
Sbjct:   177 YSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEISTTSMGIDTKEDYEK 231

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0479 CBU_0479 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 91/244 (37%), Positives = 143/244 (58%)

Query:    53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
             IIPARF S+R  GK LV+I GKPMIQ  +E S + +  + +V+ATDD++I +  + FGA 
Sbjct:     6 IIPARFDSTRLPGKALVDIAGKPMIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 64

Query:   113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
             V MTS   ++GTER  EA   L  + D I+V +QGDEPLI P+ I  + + L    +   
Sbjct:    65 VCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 124

Query:   172 STAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK---SGKVNPQF--PYLLHL 225
             ++  T + + ++ F+P+  K V++   YA+YFS   IP+ +   S K N Q    +  H+
Sbjct:   125 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHV 184

Query:   226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH-GVDAPEDVEK 284
             GI +Y   FL+ Y      P +  E LEQL++L +G ++ ++    +   GVD  ED+E+
Sbjct:   185 GIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLER 244

Query:   285 IESF 288
             + ++
Sbjct:   245 VRAY 248

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0019294 "keto-3-deoxy-D-manno-octulosonic acid biosynthetic process" evidence=ISS

TIGR_CMR|SPO_0038 SPO_0038 "3-deoxy-D-manno-octulosonate cytidylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 98/261 (37%), Positives = 141/261 (54%)

Query:    54 IPARFASSRFEGKPLVNILGKP-----MIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
             IPAR+AS+R+ GKPLV++ G       +I+R+W  +   +  D +VVATDD++I    + 
Sbjct:     7 IPARYASTRYPGKPLVSLTGASGTEMTLIERSWRAAMAVSGADRVVVATDDDRIRAVAEG 66

Query:   109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
             FGA+V+MTS  C NGTERC EA   L   +DIVVN+QGD PL     ++ ++  L+AAP+
Sbjct:    67 FGAEVVMTSSDCVNGTERCAEAHAVLGGGFDIVVNLQGDAPLTPHWFVEDLIAGLRAAPE 126

Query:   169 AVFSTAVTSLKPE--DAFDPNR-------VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ- 218
             A  +T V        + F  +R          V      A+YFS+ +IP+      +   
Sbjct:   127 ADIATPVLRCDGMALNGFLNDRKHGRVGGTTAVFAADRSALYFSKEVIPFTSQIYADDAP 186

Query:   219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG--- 275
              P   H+G+ +Y    L  YP     PL+  E LEQL+ +ENG   KV+ V+ EA G   
Sbjct:   187 TPVFHHVGVYAYRPGALADYPTWPMGPLETLEGLEQLRFMENG--RKVLCVEVEARGRQF 244

Query:   276 --VDAPEDVEKIESFMRERNL 294
               ++ PEDV +IE  M    L
Sbjct:   245 WELNNPEDVARIEEMMAAMGL 265

GO:0008690 "3-deoxy-manno-octulosonate cytidylyltransferase activity" evidence=ISS

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3EAK6	KDSB_GEOLS	2, ., 7, ., 7, ., 3, 8	0.3888	0.8169	0.9563	yes	no
Q3A370	KDSB_PELCD	2, ., 7, ., 7, ., 3, 8	0.4274	0.8101	0.956	yes	no
Q7MTW6	KDSB_PORGI	2, ., 7, ., 7, ., 3, 8	0.4101	0.8203	0.9527	yes	no
B2RLM4	KDSB_PORG3	2, ., 7, ., 7, ., 3, 8	0.4101	0.8203	0.9527	yes	no
Q8F0C3	KDSB_LEPIN	2, ., 7, ., 7, ., 3, 8	0.4377	0.8203	0.9797	yes	no
B0BBG2	KDSB_CHLTB	2, ., 7, ., 7, ., 3, 8	0.4530	0.8033	0.9330	yes	no
A1VA25	KDSB_DESVV	2, ., 7, ., 7, ., 3, 8	0.4057	0.8169	0.9563	yes	no
B8FKL0	KDSB_DESAA	2, ., 7, ., 7, ., 3, 8	0.4227	0.8203	0.9877	yes	no
A8ZWH0	KDSB_DESOH	2, ., 7, ., 7, ., 3, 8	0.4074	0.8101	0.9637	yes	no
B0B9T2	KDSB_CHLT2	2, ., 7, ., 7, ., 3, 8	0.4530	0.8033	0.9330	yes	no
Q8RFA8	KDSB_FUSNN	2, ., 7, ., 7, ., 3, 8	0.4372	0.8169	0.9836	yes	no
A7MV12	KDSB_VIBHB	2, ., 7, ., 7, ., 3, 8	0.4186	0.8101	0.9484	yes	no
Q9PKL1	KDSB_CHLMU	2, ., 7, ., 7, ., 3, 8	0.4612	0.8033	0.9330	yes	no
Q72UN2	KDSB_LEPIC	2, ., 7, ., 7, ., 3, 8	0.4377	0.8203	0.9758	yes	no
A6L9D4	KDSB_PARD8	2, ., 7, ., 7, ., 3, 8	0.4404	0.8169	0.9601	yes	no
Q254V8	KDSB_CHLFF	2, ., 7, ., 7, ., 3, 8	0.4204	0.8135	0.9448	yes	no
P0CD75	KDSB_CHLTR	2, ., 7, ., 7, ., 3, 8	0.4530	0.8033	0.9330	yes	no
Q04VK9	KDSB_LEPBJ	2, ., 7, ., 7, ., 3, 8	0.4377	0.8203	0.9837	yes	no
B9M9Q4	KDSB_GEOSF	2, ., 7, ., 7, ., 3, 8	0.4173	0.8169	0.9525	yes	no
Q3KMI0	KDSB_CHLTA	2, ., 7, ., 7, ., 3, 8	0.4530	0.8033	0.9330	yes	no
Q6MD00	KDSB_PARUW	2, ., 7, ., 7, ., 3, 8	0.4879	0.8305	0.9459	yes	no
Q2LY80	KDSB_SYNAS	2, ., 7, ., 7, ., 3, 8	0.3991	0.8101	0.9637	yes	no
Q9C920	KDSB_ARATH	2, ., 7, ., 7, ., 3, 8	0.8817	0.9457	0.9620	yes	no
A6L5J0	KDSB_BACV8	2, ., 7, ., 7, ., 3, 8	0.4063	0.8169	0.9563	yes	no
Q822T3	KDSB_CHLCV	2, ., 7, ., 7, ., 3, 8	0.4040	0.8135	0.9448	yes	no
Q5L5S2	KDSB_CHLAB	2, ., 7, ., 7, ., 3, 8	0.4089	0.8203	0.9527	yes	no
C6E0M8	KDSB_GEOSM	2, ., 7, ., 7, ., 3, 8	0.4110	0.8203	0.9603	yes	no
Q04XW6	KDSB_LEPBL	2, ., 7, ., 7, ., 3, 8	0.4377	0.8203	0.9837	yes	no
Q01T78	KDSB_SOLUE	2, ., 7, ., 7, ., 3, 8	0.4238	0.8067	0.9444	yes	no
Q726J3	KDSB_DESVH	2, ., 7, ., 7, ., 3, 8	0.4057	0.8169	0.9563	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.921
3rd Layer	2.7.7.38	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI000980	CMP-KDO synthetase (293 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V1151	3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase (EC-2.5.1.55) (290 aa)	•		•		•		•		0.930
	estExt_fgenesh4_pg.C_LG_II0575	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•		•		•		0.929
	eugene3.00160899	hypothetical protein (446 aa)	•		•			•	•		0.885
	gw1.X.6418.1	hypothetical protein (277 aa)	•		•				•		0.844
	estExt_Genewise1_v1.C_LG_V1283	hypothetical protein (341 aa)	•		•				•		0.844
	estExt_fgenesh4_pg.C_LG_II0344	SubName- Full=Putative uncharacterized protein; (341 aa)	•		•				•		0.840
	estExt_fgenesh4_pg.C_LG_VI0968	hypothetical protein (365 aa)	•		•				•		0.789
	gw1.IV.2364.1	hypothetical protein (234 aa)	•		•				•		0.715
	gw1.XIII.2878.1	hypothetical protein (392 aa)	•		•				•		0.698
	eugene3.202060001	hypothetical protein (219 aa)	•		•				•		0.657

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PLN02917	293	PLN02917, PLN02917, CMP-KDO synthetase	0.0
cd02517	239	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca	1e-135
PRK05450	245	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt	1e-116
COG1212	247	COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid	1e-101
PRK13368	238	PRK13368, PRK13368, 3-deoxy-manno-octulosonate cyt	3e-95
TIGR00466	238	TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cyti	4e-70
pfam02348	197	pfam02348, CTP_transf_3, Cytidylyltransferase	8e-59
cd02518	233	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase i	1e-20
cd02513	223	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase ac	2e-18
COG1861	241	COG1861, SpsF, Spore coat polysaccharide biosynthe	3e-16
TIGR03584	222	TIGR03584, PseF, pseudaminic acid CMP-transferase	2e-13
COG1083	228	COG1083, NeuA, CMP-N-acetylneuraminic acid synthet	5e-12
pfam12804	178	pfam12804, NTP_transf_3, MobA-like NTP transferase	3e-08
cd04182	186	cd04182, GT_2_like_f, GT_2_like_f is a subfamily o	3e-06
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	1e-04
COG2068	199	COG2068, COG2068, Uncharacterized MobA-related pro	3e-04
COG2266	177	COG2266, COG2266, GTP:adenosylcobinamide-phosphate	3e-04
COG0746	192	COG0746, MobA, Molybdopterin-guanine dinucleotide	6e-04
cd02516	218	cd02516, CDP-ME_synthetase, CDP-ME synthetase is i	6e-04
pfam01128	221	pfam01128, IspD, Uncharacterized protein family UP	0.003

>gnl|CDD|215495 PLN02917, PLN02917, CMP-KDO synthetase

 Score =  611 bits (1577), Expect = 0.0
 Identities = 265/293 (90%), Positives = 276/293 (94%)

Query: 3   SKSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSR 62
           S S  S S SSSSTKSWIVHGIVAGAAIA A+GA AYL RS+ FRSRVVGIIPARFASSR
Sbjct: 1   SPSSSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSR 60

Query: 63  FEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN 122
           FEGKPLV+ILGKPMIQRTWER+KLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRN
Sbjct: 61  FEGKPLVHILGKPMIQRTWERAKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRN 120

Query: 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 182
           GTERCNEAL+KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED
Sbjct: 121 GTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 180

Query: 183 AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH 242
           A DPNRVKCVVDN GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYD+ FLKIYP L 
Sbjct: 181 ASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELP 240

Query: 243 PTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS 295
           PTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD PEDVEKIE+ MRERN+S
Sbjct: 241 PTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS 293

Length = 293

>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

 Score =  381 bits (981), Expect = e-135
 Identities = 125/241 (51%), Positives = 167/241 (69%), Gaps = 3/241 (1%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           +V+ +IPAR+ASSR  GKPL +I GKPMIQ  +ER+K A  LD +VVATDDE+IA+  + 
Sbjct: 1   KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVES 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FG  V+MTS    +GT+R  E  +KL+   DIVVN+QGDEPLI PE+ID VV AL+  P 
Sbjct: 61  FGGKVVMTSPDHPSGTDRIAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPG 120

Query: 169 AVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
              +T  T +   E+ F+PN VK V+D  GYA+YFSR  IPY +    +  FPY  H+GI
Sbjct: 121 VDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPR--DSSEDFPYYKHIGI 178

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
            +Y  +FL  +  L P+PL+  E LEQL+ LENGYK+KV++ DHE+ GVD PED+E++E+
Sbjct: 179 YAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238

Query: 288 F 288
            
Sbjct: 239 L 239

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239

>gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  332 bits (855), Expect = e-116
 Identities = 116/246 (47%), Positives = 159/246 (64%), Gaps = 6/246 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + IIPAR+AS+R  GKPL +I GKPMI R +ER+  A   D +VVATDDE+IA+  + 
Sbjct: 2   KFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKAG-ADRVVVATDDERIADAVEA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG +V+MTS    +GT+R  EA  KL     DIVVN+QGDEPLI PEIID V + L A P
Sbjct: 61  FGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPL-ANP 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-KSGKVNPQFPYLLHL 225
           +A  +T    +   E+AF+PN VK V+D  G A+YFSR  IPY   +   +   P   H+
Sbjct: 120 EADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSAPTPVYRHI 179

Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEK 284
           GI +Y   FL+ +  L P+PL+  E LEQL+ LENGY++ V+ V+   + GVD PED+E+
Sbjct: 180 GIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLER 239

Query: 285 IESFMR 290
           + + + 
Sbjct: 240 VRALLA 245

Length = 245

>gnl|CDD|224133 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

 Score =  296 bits (759), Expect = e-101
 Identities = 115/248 (46%), Positives = 159/248 (64%), Gaps = 5/248 (2%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + V IIPAR AS+R  GKPL +I GKPMI R  ER+ L +  D +VVATDDE+IAE  Q 
Sbjct: 3   KFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERA-LKSGADRVVVATDDERIAEAVQA 61

Query: 109 FGADVIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG + +MTS+  ++GT+R  E ++KL     +I+VN+QGDEP IEPE+I  V + L+ + 
Sbjct: 62  FGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSN 121

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
             + + AV     E+AF+PN VK V+D  GYA+YFSR  IPY +        P+L H+GI
Sbjct: 122 ADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGR--DNFGGTPFLRHIGI 179

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIE 286
            +Y + FL+ +  L P+PL+  E LEQL+VLENG K+ V  V    + GVD PED+E++ 
Sbjct: 180 YAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVR 239

Query: 287 SFMRERNL 294
             +    L
Sbjct: 240 KILSNNLL 247

Length = 247

>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

 Score =  280 bits (719), Expect = 3e-95
 Identities = 102/241 (42%), Positives = 154/241 (63%), Gaps = 6/241 (2%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           VV +IPAR+ SSR  GKPL++ILGKPMIQ  +ER+  A  ++ + VATDD++I +  + F
Sbjct: 3   VVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAF 62

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
           G  V+MTS+   +GT+R  E + K+E   DI +N+QGDEP+I P  ID +++ +   P  
Sbjct: 63  GGKVVMTSDDHLSGTDRLAEVMLKIE--ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSI 120

Query: 170 VFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ 228
             +T    +  E+ F  PN VK VVD +G A+YFSR  IP  + G+      YL H+GI 
Sbjct: 121 NVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDGESA---RYLKHVGIY 177

Query: 229 SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 288
           ++  + L+ +  L  TPL+  E LEQL+ LE+G K+++++V   + GVD PED+E++ + 
Sbjct: 178 AFRRDVLQQFSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237

Query: 289 M 289
           M
Sbjct: 238 M 238

Length = 238

>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cytidylyltransferase

 Score =  216 bits (552), Expect = 4e-70
 Identities = 106/237 (44%), Positives = 139/237 (58%), Gaps = 7/237 (2%)

Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPAR ASSR  GKPL +I GKPMI    E +   +  D  +VATDDE +A+ CQ+FG +
Sbjct: 3   IIPARLASSRLPGKPLEDIFGKPMIVHVAENA-NESGADRCIVATDDESVAQTCQKFGIE 61

Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS+   +GTER  E ++KL  K D  +VN+QGDEP I  EII  V   L      + 
Sbjct: 62  VCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMA 121

Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP----YLLHLGI 227
           + AV     E+AF+PN VK V+D+ GYA+YFSR LIP+++      Q P     L H+GI
Sbjct: 122 ALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGI 181

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVE 283
             Y + F++ Y    P  L+  E LEQL+VL  G K+ V       + GVD  ED+E
Sbjct: 182 YGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE 238

[Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 238

>gnl|CDD|216984 pfam02348, CTP_transf_3, Cytidylyltransferase

 Score =  186 bits (474), Expect = 8e-59
 Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 2/197 (1%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR  S R  GK L+ + GKP+I R  E +  +   D +VVATD E+IA+  ++FG
Sbjct: 1   IAIIPARSGSKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVATDSEEIADIAEKFG 60

Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
           A V+M   S  +GT+R  EA++      +I+VN+QGDEPL++P  I   ++ L+ A +  
Sbjct: 61  AGVVMRRGSLASGTDRFIEAVKAFLADEEIIVNLQGDEPLLQPTSILRAIEHLREAGEDY 120

Query: 171 FSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
            ST V  +   E+  +PN +K V+D+ GYA+YFSR  IPY +     P   YL H GI +
Sbjct: 121 VSTLVKPVVSSEEILNPNPLKVVLDDAGYALYFSRSPIPYIRD-HPAPLQLYLRHKGIYA 179

Query: 230 YDSNFLKIYPGLHPTPL 246
           +    L  Y    P+ L
Sbjct: 180 FRKEHLIRYVIDTPSDL 196

This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalyzing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <=> diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43, catalyzing the reaction:- CTP + N-acylneuraminate <=> diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand. Length = 197

>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 8/120 (6%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT----DDEKIAECC 106
           V II AR  S+R  GK L  + GKP+++   +R K +  +D +V+AT    +D+ +    
Sbjct: 1   VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA 60

Query: 107 QQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
           ++ G  V   SE   +   R  +A +  E   D+VV I GD PLI+PEIID V++    +
Sbjct: 61  KKLGVKVFRGSEE--DVLGRYYQAAE--EYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. Length = 233

>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           +++ IIPAR  S    GK +  + GKP+I  T E +  +   D +VV+TDDE+IAE  ++
Sbjct: 1   KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARK 60

Query: 109 FGADVI-MTSESCRNGTERCNEALQ-------KLEKKYDIVVNIQGDEPLIEPEIIDGVV 160
           +GA+V  +        T    + +        +L + +DIVV +Q   PL   E ID  +
Sbjct: 61  YGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAI 120

Query: 161 KALQAAP-DAVFS 172
           + L +   D+VFS
Sbjct: 121 ELLLSEGADSVFS 133

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. Length = 223

>gnl|CDD|224774 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 8/121 (6%)

Query: 47  RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK----I 102
            S ++ II AR  S+R  GK L+ + G+PMI+   ER + +  LD +VVAT D++    +
Sbjct: 1   MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDAL 60

Query: 103 AECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162
            E C+  G  V   SE   +  +R   A++      D+VV + GD P ++PE++D  V  
Sbjct: 61  EEVCRSHGFYVFRGSEE--DVLQRFIIAIKA--YSADVVVRVTGDNPFLDPELVDAAVDR 116

Query: 163 L 163
            
Sbjct: 117 H 117

Length = 241

>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR  S R   K +    GKPMI  + E +  +   D +VV+TDDE+IAE  + +G
Sbjct: 1   IAIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYG 60

Query: 111 ADV-IMTSESC---RNGT-ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
           A V  +  +       GT      A+++L+  K+YD    I    P ++ +I+    + L
Sbjct: 61  ASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELL 120

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202
              P+A F  +VTS     AF   R   + +N G  ++F
Sbjct: 121 -KQPNAHFVFSVTSF----AFPIQRAFKLKENGGVEMFF 154

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to , this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Length = 222

>gnl|CDD|224008 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + IIPAR  S   + K +    GKP+I  T E +  +   D +V+++D E+I E  ++
Sbjct: 3   KNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKK 62

Query: 109 FGADV-IMTSESCRNGTERCN----EALQKLEKKYDIVVNIQGDEPLIEPEIID-GVVKA 162
           +GA V +   +   +           AL+      D ++ +Q   PL+    I     K 
Sbjct: 63  YGAKVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKF 122

Query: 163 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204
           L    D++FS       P  AF  N  +    N     + +R
Sbjct: 123 LNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNED-PDFETR 163

Length = 228

>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 59  ASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS 117
            SSR  G K L+ + GKP+++R  +R  L    D +VV T+  +IA      G  V+   
Sbjct: 8   RSSRMGGDKALLPLGGKPLLERVLDR--LRPAGDEVVVVTNRPEIAAALAGLGVPVV--- 62

Query: 118 ESCRNGTERCN------EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
               +              L+       ++V +  D P + P+++  ++ AL+A+   +
Sbjct: 63  ---PDPDPGQGPLAGLAAGLRAAPDADAVLV-LACDMPFLTPDLLRRLLAALEASGADI 117

This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178

>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 20/132 (15%)

Query: 50  VVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECC 106
           +  II A   SSR  G K L+ + GKP+++   + + LA  L  ++V    + + +    
Sbjct: 1   IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAA-LAAGLSRVIVVLGAEADAVRAAL 59

Query: 107 QQFGADVI--------MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                 V+        M S S   G       L+ L    D V+ +  D+PL+  E +  
Sbjct: 60  AGLPVVVVINPDWEEGM-SSSLAAG-------LEALPADADAVLILLADQPLVTAETLRA 111

Query: 159 VVKALQAAPDAV 170
           ++ A +     +
Sbjct: 112 LIDAFREDGAGI 123

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 66  KPLVNILGKPMIQRTWERS-KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT 124
           K L  + GKPM++   + +  L      +VV    E++ +       + ++  E  + GT
Sbjct: 18  KVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVLQEE--QLGT 75

Query: 125 E---RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181
               +   AL  L+     V+ + GD PLI PE +  +++A + A   V    V + + E
Sbjct: 76  GHAVKQ--ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADV---TVLTAELE 130

Query: 182 DAF 184
           D  
Sbjct: 131 DPT 133

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General function prediction only]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 19/135 (14%)

Query: 47  RSRVVGIIPARFASSRF-EGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDEKI 102
            S V  ++ A   SSR  + K L  + GKP+++ + E +  A  LD ++V T     E +
Sbjct: 3   PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSAG-LDRVIVVTGHRVAEAV 61

Query: 103 AECCQQFGADVIMT-------SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEI 155
                Q G  V++        S S + G       L+  + + D VV + GD P + P  
Sbjct: 62  EALLAQLGVTVVVNPDYAQGLSTSLKAG-------LRAADAEGDGVVLMLGDMPQVTPAT 114

Query: 156 IDGVVKALQAAPDAV 170
           +  ++ A +A   AV
Sbjct: 115 VRRLIAAFRARGAAV 129

Length = 199

>gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 66  KPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123
           KPL+ + GKP+I R      L   +D ++VA      K  E  +  G  VI T      G
Sbjct: 19  KPLLEVCGKPLIDRV--LEALRKIVDEIIVAISPHTPKTKEYLESVGVKVIETP---GEG 73

Query: 124 TER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTA 174
                  AL+ L      ++ +  D P + P IID V+ A  +   P      A
Sbjct: 74  YVEDLRFALESLGTP---ILVVSADLPFLNPSIIDSVIDAAASVEVPIVTVVKA 124

Length = 177

>gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 18/126 (14%)

Query: 52  GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA 111
           G+I A   S R   K L+ + G+P+I+   +R  L   +D +V++ +  +      +FG 
Sbjct: 7   GVILAGGKSRRMRDKALLPLNGRPLIEHVIDR--LRPQVDVVVISANRNQ--GRYAEFGL 62

Query: 112 DVIMTSESCRNGTERCN------EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
            V+       +             AL+      + V+ +  D P I PE+++ ++ A + 
Sbjct: 63  PVV------PDELPGFGPLAGILAALRHF--GTEWVLVLPCDMPFIPPELVERLLSAFKQ 114

Query: 166 APDAVF 171
              A+ 
Sbjct: 115 TGAAIV 120

Length = 192

>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 23/136 (16%)

Query: 50  VVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAE 104
           V  II A  + SR      K  + + GKP+++ T E       +D +VV    DD  +A+
Sbjct: 1   VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAK 60

Query: 105 CCQQFGADVIMT--------SESCRNGTERCNEALQKLEK-KYDIVVNIQ-GDEPLIEPE 154
              ++G   ++          +S  NG       L+ L     DIV+ I     P + PE
Sbjct: 61  ELAKYGLSKVVKIVEGGATRQDSVLNG-------LKALPDADPDIVL-IHDAARPFVSPE 112

Query: 155 IIDGVVKALQAAPDAV 170
           +ID ++ AL+    A+
Sbjct: 113 LIDRLIDALKEYGAAI 128

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218

>gnl|CDD|216314 pfam01128, IspD, Uncharacterized protein family UPF0007

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 50  VVGIIPARFASSRF-EGKP--LVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC 106
           VV +IPA  +  R   G P   + +LG+P+++ T +    +  +D +VVA   +   E  
Sbjct: 1   VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFR 60

Query: 107 QQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL-QA 165
           Q  G   I          +     L+ L      V+   G  P +    +  ++ AL   
Sbjct: 61  QLLGDPSIQLVAGGDTRQDSVLNGLKALAGTAKFVLVHDGARPCLPHADLARLLAALETG 120

Query: 166 APDAVFSTAVT 176
              A+ +  VT
Sbjct: 121 TQGAILALPVT 131

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PLN02917	293	CMP-KDO synthetase	100.0
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	100.0
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	100.0
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	100.0
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	100.0
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	100.0
PF01128	221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.97
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.96
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	99.96
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.96
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.96
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	99.96
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	99.96
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.95
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	99.94
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.94
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	99.94
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.94
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.93
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	99.93
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.93
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.93
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.92
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.92
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	99.92
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.92
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.92
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.92
PRK10122	297	GalU regulator GalF; Provisional	99.91
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.91
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.91
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.91
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.91
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	99.91
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.9
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.9
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.9
COG2068	199	Uncharacterized MobA-related protein [General func	99.89
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.89
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.89
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.89
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.89
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.89
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.88
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.88
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.88
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.87
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.87
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.87
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.87
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	99.86
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.86
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	99.86
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.86
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.86
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.85
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	99.85
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	99.85
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	99.85
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.85
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	99.85
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	99.85
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	99.85
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.83
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.83
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	99.82
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.82
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	99.82
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	99.82
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	99.81
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	99.81
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	99.8
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	99.8
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.78
PRK14500	346	putative bifunctional molybdopterin-guanine dinucl	99.77
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.76
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.74
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	99.74
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.71
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.71
COG1861	241	SpsF Spore coat polysaccharide biosynthesis protei	99.69
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.62
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.61
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.52
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.48
COG4750	231	LicC CTP:phosphocholine cytidylyltransferase invol	99.45
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	99.41
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	99.3
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.07
KOG1461	673	consensus Translation initiation factor 2B, epsilo	98.73
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	98.71
cd04193	323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	98.5
PTZ00339	482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	98.49
COG1920	210	Predicted nucleotidyltransferase, CobY/MobA/RfbA f	98.32
PF01983	217	CofC: Guanylyl transferase CofC like; InterPro: IP	98.2
cd00897	300	UGPase_euk Eukaryotic UGPase catalyses the synthes	97.93
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	97.75
PLN02435	493	probable UDP-N-acetylglucosamine pyrophosphorylase	97.64
cd06424	315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	97.4
PLN02830	615	UDP-sugar pyrophosphorylase	97.19
PF01704	420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	97.11
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	96.5
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	96.31
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	96.29
cd06438	183	EpsO_like EpsO protein participates in the methano	96.21
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	96.13
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	96.09
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	95.99
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	95.97
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	95.83
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	95.8
COG4284	472	UDP-glucose pyrophosphorylase [Carbohydrate transp	95.74
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	95.69
PRK11204	420	N-glycosyltransferase; Provisional	95.24
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	95.17
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	95.02
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	94.88
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	94.87
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	94.64
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	94.58
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	94.45
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	94.39
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	94.37
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	94.37
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	94.32
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	94.14
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	94.1
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	93.78
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	93.67
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	93.64
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	93.59
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	93.57
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	93.53
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	93.5
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	93.39
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	93.34
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	93.32
KOG2388	477	consensus UDP-N-acetylglucosamine pyrophosphorylas	93.22
PRK14583	444	hmsR N-glycosyltransferase; Provisional	92.89
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	92.59
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	92.12
PRK05454	691	glucosyltransferase MdoH; Provisional	92.08
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	92.05
COG1216	305	Predicted glycosyltransferases [General function p	91.88
COG1215	439	Glycosyltransferases, probably involved in cell wa	91.66
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	91.53
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	91.46
PRK10073	328	putative glycosyl transferase; Provisional	90.48
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	89.99
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	89.69
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	89.68
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	89.6
PRK10018	279	putative glycosyl transferase; Provisional	87.01
PRK10063	248	putative glycosyl transferase; Provisional	86.98
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	84.64
COG3222	211	Uncharacterized protein conserved in bacteria [Fun	83.29
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	82.56

>PLN02917 CMP-KDO synthetase

Probab=100.00  E-value=4e-50  Score=361.65  Aligned_cols=291  Identities=91%  Similarity=1.354  Sum_probs=250.7

Q ss_pred             CCCCCCCCCCCChhhhHHHHhhccchhcccCeeeeeCCCCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHH
Q 022555            5 SICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERS   84 (295)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l   84 (295)
                      +..+.|.++++||+||+||+++++++|.+||+-.|.+|.|+..|++.+||||||.|+||++|+|++++|+|||+|+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a   82 (293)
T PLN02917          3 SSSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERA   82 (293)
T ss_pred             cccCCccccccchhHHhhhhcccccceeeccCchhhhhccccCCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHH
Confidence            33456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555           85 KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus        85 ~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      .+++.++.|+|+++++++.+.+.++++.++.+++..++|+.++..|+..+..+.|.+++++||+||+++++|+++++.+.
T Consensus        83 ~~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~  162 (293)
T PLN02917         83 KLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  162 (293)
T ss_pred             HcCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHH
Confidence            98766788888888889988888778887777666678888888888887534689999999999999999999999887


Q ss_pred             hCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC
Q 022555          165 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT  244 (295)
Q Consensus       165 ~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~  244 (295)
                      ++.+.++++.+.+...++..+|++++++.|++|+++||+++++|+.|+....+..+.++|+|+|+|+.+.|..+..+.++
T Consensus       163 ~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~  242 (293)
T PLN02917        163 AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPT  242 (293)
T ss_pred             hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCC
Confidence            66566665554444445567778888778888999999999888888755456667899999999999999977777777


Q ss_pred             CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhcCC
Q 022555          245 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNLS  295 (295)
Q Consensus       245 ~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~~~  295 (295)
                      .++..++++++..+++|.+|.++..+...+.||||+||+.+|+++++|++|
T Consensus       243 n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~~~  293 (293)
T PLN02917        243 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERNIS  293 (293)
T ss_pred             cccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            788888888888888999999998877889999999999999999999986

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-40  Score=276.88  Aligned_cols=243  Identities=47%  Similarity=0.766  Sum_probs=219.7

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER  126 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~  126 (295)
                      +|+..+||||+=.||||++|||..|+|+|||.|+.+++.++ +.++++|.|+++++.+.++.+|..++.+...++.|+++
T Consensus         1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR   79 (247)
T COG1212           1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDR   79 (247)
T ss_pred             CCceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHH
Confidence            47788999999999999999999999999999999999998 59999999999999999999999999998889999999


Q ss_pred             HHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeec
Q 022555          127 CNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       127 i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      +..+++.+. .+.+.++-++||.||+.++.|+.+++.++++ ++.+++++.+++ .++.++|+.+|++.|.+|+.+||++
T Consensus        80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSR  158 (247)
T COG1212          80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSR  158 (247)
T ss_pred             HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEc
Confidence            999998885 3456888899999999999999999999876 566666666665 4677899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCCCHHHHH
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE  283 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idIdtpeDl~  283 (295)
                      .++||.|+.  ..+.|.+.+.|||.|++++|.+|....++.+|..|.++|++++++|.+|++...++ ..+.|||||||+
T Consensus       159 s~iP~~rd~--~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe  236 (247)
T COG1212         159 APIPYGRDN--FGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLE  236 (247)
T ss_pred             CCCCCcccc--cCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHH
Confidence            999999875  33368999999999999999999999999999999999999999999999998875 559999999999


Q ss_pred             HHHHHHHHhc
Q 022555          284 KIESFMRERN  293 (295)
Q Consensus       284 ~ae~ll~~r~  293 (295)
                      +++++++++.
T Consensus       237 ~v~~~~~~~~  246 (247)
T COG1212         237 RVRKILSNNL  246 (247)
T ss_pred             HHHHHHHhhc
Confidence            9999998764

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=100.00  E-value=8.4e-37  Score=268.07  Aligned_cols=230  Identities=45%  Similarity=0.707  Sum_probs=193.7

Q ss_pred             EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHH
Q 022555           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEAL  131 (295)
Q Consensus        52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al  131 (295)
                      +||||||.|+||++|+|++++|+|||+|+++++.+++ +++|+|+++++++.+.+++++++++.+.....+|+.++..++
T Consensus         2 ~iIpA~g~s~R~~~K~L~~l~GkPli~~~le~~~~~~-~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~   80 (238)
T TIGR00466         2 VIIPARLASSRLPGKPLEDIFGKPMIVHVAENANESG-ADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVV   80 (238)
T ss_pred             EEEecCCCCCCCCCCeecccCCcCHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHH
Confidence            7999999999999999999999999999999998875 999999999888888888888887765555678888887777


Q ss_pred             HHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecCCCCC
Q 022555          132 QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPY  209 (295)
Q Consensus       132 ~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~  209 (295)
                      ..+. .+.|.+++++||+||++++.|+++++.+.+. +..+++++.+.. .++..+|+++|++.+.+|++++|++.++|+
T Consensus        81 ~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~  159 (238)
T TIGR00466        81 EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPF  159 (238)
T ss_pred             HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCC
Confidence            6552 1357899999999999999999999988543 233444455553 355677999998778899999999998888


Q ss_pred             CCCCCCCCCCC----ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCC-cCCCCCHHHHH
Q 022555          210 NKSGKVNPQFP----YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVE  283 (295)
Q Consensus       210 ~r~~~~~~~~p----~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~-~idIdtpeDl~  283 (295)
                      +|+..+..++|    ++.+.|+|.|++++|..|..+.++.+|..|.++|++++++|.+|+++..+.. .+.||||+|++
T Consensus       160 ~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~~  238 (238)
T TIGR00466       160 DRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDLE  238 (238)
T ss_pred             CCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHcC
Confidence            88865544554    5679999999999999999998999999999999999999999999998766 68999999984

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=100.00  E-value=3.9e-34  Score=252.03  Aligned_cols=240  Identities=47%  Similarity=0.789  Sum_probs=181.3

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||+|+||++|+|++++|+|||+|+++++.++ ++++|+|+++++.+.+.+.+++++++...+...+++.++
T Consensus         1 m~~~~iIlA~g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~   79 (245)
T PRK05450          1 MKFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRI   79 (245)
T ss_pred             CceEEEEecCCCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHH
Confidence            6889999999999999999999999999999999999988 699999999988888877777888766544555666666


Q ss_pred             HHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC-CCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       128 ~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~-~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ..++..+. .+.+.+++++||+||+++++++++++.+.++.... ++.+.+. ......+|+.+++.+|++|++++|.++
T Consensus        80 ~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~  158 (245)
T PRK05450         80 AEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADM-ATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRA  158 (245)
T ss_pred             HHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCe-EeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCC
Confidence            66666552 13578999999999999999999999887542222 2222333 212334667788878889999999999


Q ss_pred             CCCCCCCCCCC-CCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCCCHHHHH
Q 022555          206 LIPYNKSGKVN-PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE  283 (295)
Q Consensus       206 ~i~~~r~~~~~-~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idIdtpeDl~  283 (295)
                      +++.+++.... +..+...++|+|+|+++.+..+....+..++..+......++..|.+|+++..++ +|+|||||+||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~  238 (245)
T PRK05450        159 PIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLE  238 (245)
T ss_pred             CCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHH
Confidence            86543322111 1235889999999999999876654444433333322234567899999999884 999999999999


Q ss_pred             HHHHHH
Q 022555          284 KIESFM  289 (295)
Q Consensus       284 ~ae~ll  289 (295)
                      +|++.+
T Consensus       239 ~a~~~~  244 (245)
T PRK05450        239 RVRALL  244 (245)
T ss_pred             HHHHHh
Confidence            999875

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=100.00  E-value=2.3e-33  Score=246.13  Aligned_cols=235  Identities=42%  Similarity=0.722  Sum_probs=174.8

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||+|+||++|+|++++|+|||+|+++++++++.+++|+|+++++++.+++++++++++..++...+++.++
T Consensus         1 m~~~aiIlA~g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~   80 (238)
T PRK13368          1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL   80 (238)
T ss_pred             CcEEEEEecCCCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHH
Confidence            57899999999999999999999999999999999999886699999999988888888888888877666666777788


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeecCC
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGL  206 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~~~  206 (295)
                      ..++..+  +.|.+++++||+||+++++++++++.+.+++...++..+.+... ....+|...++..+++|++..|.+++
T Consensus        81 ~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~  158 (238)
T PRK13368         81 AEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSP  158 (238)
T ss_pred             HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCC
Confidence            8888876  35789999999999999999999998865433223222233221 11123666555566778988887653


Q ss_pred             CCCCCCCCCCCCC--CceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHH
Q 022555          207 IPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK  284 (295)
Q Consensus       207 i~~~r~~~~~~~~--p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~  284 (295)
                      .+ .    ++|+.  ....|+|+|+|++++|..+......+++..+..+...++..|.++.+++.+..|+|||||+||..
T Consensus       159 ~~-~----~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~  233 (238)
T PRK13368        159 IP-S----RRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLER  233 (238)
T ss_pred             CC-C----CCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHH
Confidence            32 1    23333  34789999999999998764432222221111111234557888999998889999999999999


Q ss_pred             HHHHH
Q 022555          285 IESFM  289 (295)
Q Consensus       285 ae~ll  289 (295)
                      |+.++
T Consensus       234 a~~~~  238 (238)
T PRK13368        234 VRAIM  238 (238)
T ss_pred             HHHhC
Confidence            99863

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=100.00  E-value=9.6e-33  Score=242.30  Aligned_cols=238  Identities=53%  Similarity=0.894  Sum_probs=175.7

Q ss_pred             ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~  128 (295)
                      ++.+||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++.+.+++.++++.+++.++...+++.++.
T Consensus         1 ~~~~iIlA~g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~   80 (239)
T cd02517           1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA   80 (239)
T ss_pred             CEEEEEecCCCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHH
Confidence            35799999999999999999999999999999999998756999999999888888887778888766544456666777


Q ss_pred             HHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCC-CCCCCceEEEECCCCeEEEeecCCC
Q 022555          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHGYAIYFSRGLI  207 (295)
Q Consensus       129 ~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~-~~~p~~~~v~~d~~g~v~~~~~~~i  207 (295)
                      .++..+....|.+++++||+||+++++++.+++.+.+++++.+++.+.++.... ..+++.++++.+++|++..|.++++
T Consensus        81 ~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  160 (239)
T cd02517          81 EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPI  160 (239)
T ss_pred             HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCC
Confidence            777776422478999999999999999999999886542333344334432111 0134556777788899988887654


Q ss_pred             CCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHH
Q 022555          208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES  287 (295)
Q Consensus       208 ~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~  287 (295)
                      +.+++.  .+......++|+|+|+++.+..+......+++.++.+....++..|.++..+..++.|+|||||+||..|++
T Consensus       161 ~~~~~~--~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~  238 (239)
T cd02517         161 PYPRDS--SEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA  238 (239)
T ss_pred             CCCCCC--CCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence            422221  122246899999999999988765432333444443322234568888999988778999999999999986


Q ss_pred             H
Q 022555          288 F  288 (295)
Q Consensus       288 l  288 (295)
                      +
T Consensus       239 ~  239 (239)
T cd02517         239 L  239 (239)
T ss_pred             C
Confidence            3

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []

Probab=99.97  E-value=4.1e-30  Score=221.74  Aligned_cols=211  Identities=24%  Similarity=0.392  Sum_probs=150.3

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeEEeCCCCCCCc
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNG  123 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v~~~~~~~~g~  123 (295)
                      +.+||||||.|+||+   ||++++++|+|+|.|+++++.+++.+++|+|++++++   ++++..+..+.++.      ||
T Consensus         1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv~------GG   74 (221)
T PF01128_consen    1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSKKKVKIVE------GG   74 (221)
T ss_dssp             EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHHTTEEEEE--------
T ss_pred             CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcCCCEEEec------CC
Confidence            579999999999997   7999999999999999999999999999999998654   34444443333332      44


Q ss_pred             H---HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          124 T---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       124 ~---~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      .   .|+++||..+....|.|++|++.+||++++.|+++++...++.++++.+  .++.       ++++. .+++|.+.
T Consensus        75 ~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~--~p~~-------DTik~-v~~~~~v~  144 (221)
T PF01128_consen   75 ATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPA--LPVT-------DTIKR-VDDDGFVT  144 (221)
T ss_dssp             SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEE--EE-S-------SEEEE-ESTTSBEE
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEE--Eecc-------ccEEE-EecCCccc
Confidence            3   5789999998755689999999999999999999999998744554443  3442       46664 56677765


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCH
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP  279 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtp  279 (295)
                      .   .   .+|+..+..|||       |.|+.+.|.. +..........+|+..  -+...|.+|++++++..+++||||
T Consensus       145 ~---t---ldR~~l~~~QTP-------Q~F~~~~l~~a~~~a~~~~~~~tDdas--l~~~~g~~v~~V~G~~~N~KIT~p  209 (221)
T PF01128_consen  145 E---T---LDRSKLWAVQTP-------QAFRFELLLEAYEKADEEGFEFTDDAS--LVEAAGKKVAIVEGSPRNIKITTP  209 (221)
T ss_dssp             E---E---ETGGGEEEEEEE-------EEEEHHHHHHHHHTHHHHTHHHSSHHH--HHHHTTS-EEEEE--TTG----SH
T ss_pred             c---c---CCHHHeeeecCC-------CeecHHHHHHHHHHHHhcCCCccCHHH--HHHHcCCCEEEEeCCCCceeECCH
Confidence            2   2   278888899999       9999999886 3332111234455431  123379999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 022555          280 EDVEKIESFMRE  291 (295)
Q Consensus       280 eDl~~ae~ll~~  291 (295)
                      +||..||.++++
T Consensus       210 eDl~~ae~ll~~  221 (221)
T PF01128_consen  210 EDLELAEALLKQ  221 (221)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999975

The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.96  E-value=7.2e-29  Score=218.76  Aligned_cols=218  Identities=16%  Similarity=0.237  Sum_probs=163.4

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH---HHHHHHcCCeEEeCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI---AECCQQFGADVIMTSESCR  121 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i---~~~~~~~~~~v~~~~~~~~  121 (295)
                      +++.+||||||.|+||+   ||+|++++|+|+|+|+++++.+.+.+++|+|+++++..   +...+.++..+.+.. ...
T Consensus        23 ~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~-gg~  101 (252)
T PLN02728         23 KSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFAL-PGK  101 (252)
T ss_pred             CceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcC-CCC
Confidence            35789999999999996   89999999999999999999886679999999985432   233344554443322 122


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      +...+++.|+..+..+.+.|+++++++||++++.|+++++...+. ++++..  .++.       ++++. .++++.+. 
T Consensus       102 ~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~-ga~i~~--~~~~-------dtik~-v~~~~~v~-  169 (252)
T PLN02728        102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVH-GAAVLG--VPVK-------ATIKE-ANSDSFVV-  169 (252)
T ss_pred             chHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC-CeEEEe--ecch-------hhEEE-ecCCCcee-
Confidence            335679999998854467899999999999999999999988765 333332  3332       35664 45566553 


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCH
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAP  279 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtp  279 (295)
                        +.  + +|+..+..|||       |+|+.+.|.. +......+...+|..   .++ ..|.+|.+++++..+++||||
T Consensus       170 --~t--~-~R~~l~~~QTP-------Q~F~~~~l~~a~~~~~~~~~~~TDd~---~~~~~~g~~V~~v~g~~~N~KITtp  234 (252)
T PLN02728        170 --KT--L-DRKRLWEMQTP-------QVIKPELLRRGFELVEREGLEVTDDV---SIVEALKHPVFITEGSYTNIKVTTP  234 (252)
T ss_pred             --ec--c-ChHHeEEEeCC-------ccchHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCceEEEecCcccccCCCH
Confidence              22  2 78899999999       9999999886 444333344556653   233 379999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 022555          280 EDVEKIESFMRERN  293 (295)
Q Consensus       280 eDl~~ae~ll~~r~  293 (295)
                      +||..|+.+++++.
T Consensus       235 eDl~~a~~~l~~~~  248 (252)
T PLN02728        235 DDMLVAERILNERS  248 (252)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999998763

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=99.96  E-value=1.6e-27  Score=207.08  Aligned_cols=209  Identities=25%  Similarity=0.312  Sum_probs=158.5

Q ss_pred             EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEE-eCCCC----CCCcHHH
Q 022555           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVI-MTSES----CRNGTER  126 (295)
Q Consensus        52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~-~~~~~----~~g~~~~  126 (295)
                      +||||+|+|+||++|++++++|+||+.|+++++.+++.+++|+|+++++++.++++++|+.++ .+++.    ..+...+
T Consensus         2 aiIpArG~Skr~~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~s   81 (222)
T TIGR03584         2 AIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAPV   81 (222)
T ss_pred             EEEccCCCCCCCCCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchHH
Confidence            799999999999999999999999999999999998889999999999999999988888764 34432    2344567


Q ss_pred             HHHHHHHccc--cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555          127 CNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS  203 (295)
Q Consensus       127 i~~al~~~~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~  203 (295)
                      +.+++..+..  +.|.++++++|+||+++++|+++++.+.++ .|+++++.  +..    .+|.+. ...+++|....+.
T Consensus        82 i~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~--~~~----~~~~~~-~~~~~~g~~~~~~  154 (222)
T TIGR03584        82 VKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVT--SFA----FPIQRA-FKLKENGGVEMFF  154 (222)
T ss_pred             HHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEee--ccC----CChHHh-eEECCCCcEEecC
Confidence            8899887742  368999999999999999999999999764 57777663  321    123222 2345677765443


Q ss_pred             cCCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHH
Q 022555          204 RGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPE  280 (295)
Q Consensus       204 ~~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpe  280 (295)
                      ....     ..++|+.|  +..|.++|+++++.+.....                .  .|.++..++++ ...+|||+++
T Consensus       155 ~~~~-----~~~rQd~~~~y~~nga~y~~~~~~~~~~~~----------------~--~~~~~~~~~m~~~~~iDID~~~  211 (222)
T TIGR03584       155 PEHF-----NTRSQDLEEAYHDAGQFYWGKSQAWLESGP----------------I--FSPHSIPIVLPRHLVQDIDTLE  211 (222)
T ss_pred             CCcc-----cCCCCCCchheeeCCeEEEEEHHHHHhcCC----------------c--cCCCcEEEEeCccceeCCCCHH
Confidence            2211     13467877  45589999999997643211                1  24567777776 6899999999


Q ss_pred             HHHHHHHHHH
Q 022555          281 DVEKIESFMR  290 (295)
Q Consensus       281 Dl~~ae~ll~  290 (295)
                      ||+.||.+++
T Consensus       212 D~~~ae~l~~  221 (222)
T TIGR03584       212 DWERAELLYK  221 (222)
T ss_pred             HHHHHHHHHh
Confidence            9999999874

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=99.96  E-value=7.4e-28  Score=210.41  Aligned_cols=215  Identities=15%  Similarity=0.245  Sum_probs=155.8

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCe---EEeCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD---VIMTSE  118 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~---v~~~~~  118 (295)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|++++++..   +.+++++..   +.... 
T Consensus         1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~-   79 (230)
T PRK13385          1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVK-   79 (230)
T ss_pred             CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcC-
Confidence            45789999999999995   899999999999999999998876799999999865433   344555431   11111 


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~  198 (295)
                      ...+...++..|+..+. +.+.+++++||+||+++++++++++.+.++ +..+++  .+++       +++++.  ++|.
T Consensus        80 ~g~~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------dti~~~--~~~~  146 (230)
T PRK13385         80 GGTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKY-GAAICA--VEVK-------DTVKRV--KDKQ  146 (230)
T ss_pred             CCchHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHHHHHHHHHhhC-CcEEEE--Eecc-------ceEEEE--cCCe
Confidence            11233467899998875 357899999999999999999999988765 333333  2332       345543  2454


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC-CCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT-PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId  277 (295)
                      +.    +.+  +|+..+..|+|       |.|+.+.|..+...... ....+|.  ...+...|.+|++++++..+++||
T Consensus       147 ~~----~~i--~r~~~~~~qtp-------q~f~~~~l~~~~~~~~~~~~~~td~--~~~~~~~g~~v~~v~~~~~n~kIt  211 (230)
T PRK13385        147 VI----ETV--DRNELWQGQTP-------QAFELKILQKAHRLASEQQFLGTDE--ASLVERSPHPVKLVQGSYYNIKLT  211 (230)
T ss_pred             eE----ecc--CHHHHhhhcCC-------ceeeHHHHHHHHHHHHhcCCCcCcH--HHHHHHcCCCEEEEECCcccCcCC
Confidence            42    222  57778888899       99999998864432211 2223442  233445799999999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 022555          278 APEDVEKIESFMRE  291 (295)
Q Consensus       278 tpeDl~~ae~ll~~  291 (295)
                      ||+||+.|+.+++.
T Consensus       212 t~eDl~~a~~~l~~  225 (230)
T PRK13385        212 TPEDMPLAKAILQG  225 (230)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999999975

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=3.1e-27  Score=204.04  Aligned_cols=217  Identities=21%  Similarity=0.303  Sum_probs=169.7

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHH---HHcCCeEEeCCCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSES  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~---~~~~~~v~~~~~~  119 (295)
                      +||||||.|||+.      +|+|+|+.+||||+|.++.|..+ ++++|.|+++.   +.+.++.   .++++++.+-.+.
T Consensus         3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~   81 (286)
T COG1209           3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP   81 (286)
T ss_pred             cEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence            9999999999995      69999999999999999999998 59999999975   3444444   2456666443334


Q ss_pred             CCCcH-HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEE-ECCC
Q 022555          120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNH  196 (295)
Q Consensus       120 ~~g~~-~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~  196 (295)
                      .+.|. .++..|-.++.  ++.|+++.+|.-|..  .+.++++.+.+ ..++.+  ...++     .+|.+++|. .|++
T Consensus        82 ~p~GlA~Av~~a~~fv~--~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i--~~~~V-----~dP~rfGV~e~d~~  150 (286)
T COG1209          82 EPDGLAHAVLIAEDFVG--DDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATI--LLYEV-----DDPSRYGVVEFDED  150 (286)
T ss_pred             CCCcHHHHHHHHHhhcC--CCceEEEecCceecc--ChHHHHHHHhccCCCcEE--EEEEc-----CCcccceEEEEcCC
Confidence            44554 56777777873  578999999996654  89999988875 334433  33454     478888775 6778


Q ss_pred             CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCc
Q 022555          197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEA  273 (295)
Q Consensus       197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~  273 (295)
                      |+++.+.|||.         ++.+++.-+|+|+|++.+++....+.|+   ++|+||.+.  .++..|..+....+.++|
T Consensus       151 ~~v~~l~EKP~---------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~--~~i~~G~~~~~~~~~G~W  219 (286)
T COG1209         151 GKVIGLEEKPK---------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAID--LYIEKGYLVVAILIRGWW  219 (286)
T ss_pred             CcEEEeEECCC---------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHH--HHHHcCcEEEEEEccceE
Confidence            89999999863         2346889999999999999988777766   588888753  457799999988888899


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 022555          274 HGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~~  291 (295)
                      +|++|++||..|+.++..
T Consensus       220 lDtGt~~slleA~~~i~~  237 (286)
T COG1209         220 LDTGTPESLLEANNFVRT  237 (286)
T ss_pred             EecCChhhHHHHHHHHHH
Confidence            999999999999988764

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=99.96  E-value=9.7e-27  Score=201.76  Aligned_cols=211  Identities=28%  Similarity=0.375  Sum_probs=149.6

Q ss_pred             ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCe-EEeCCCCC----CCc
Q 022555           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD-VIMTSESC----RNG  123 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~-v~~~~~~~----~g~  123 (295)
                      ++.+||||||+|+||++|+|++++|+|||+|+++.+.+++.+++|+|+++++++.+.+.++++. ++.++...    .+.
T Consensus         1 ~~~~iIlA~G~s~R~~~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T cd02513           1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS   80 (223)
T ss_pred             CeEEEEecCCCCCCCCCcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCc
Confidence            4679999999999999999999999999999999999886689999999888888877777763 33333222    233


Q ss_pred             HHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555          124 TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA  199 (295)
Q Consensus       124 ~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v  199 (295)
                      ..++.++++.+..   +.+.+++++||+||+++++++++++.+.++ .++++++  .+...    .| +.....+++| .
T Consensus        81 ~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~--~~~~~----~~-~~~~~~~~~~-~  152 (223)
T cd02513          81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSV--TEFHR----FP-WRALGLDDNG-L  152 (223)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEE--EecCc----Cc-HHheeeccCC-c
Confidence            4678888887642   247999999999999999999999998753 4555544  33321    11 2222223333 1


Q ss_pred             EEeecCCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCC
Q 022555          200 IYFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGV  276 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idI  276 (295)
                      .....    ..+...++|++|  +..|.|+|+|+.+.+.....                .  .|.++..++.+ ...+||
T Consensus       153 ~~~~~----~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~----------------~--~g~~~~~~~~~~~~~~dI  210 (223)
T cd02513         153 EPVNY----PEDKRTRRQDLPPAYHENGAIYIAKREALLESNS----------------F--FGGKTGPYEMPRERSIDI  210 (223)
T ss_pred             eeccC----cccccCCcCCChhHeeECCEEEEEEHHHHHhcCC----------------c--cCCCeEEEEeCccceeCC
Confidence            11111    123345677777  45578899999997643211                1  36677666665 589999


Q ss_pred             CCHHHHHHHHHHH
Q 022555          277 DAPEDVEKIESFM  289 (295)
Q Consensus       277 dtpeDl~~ae~ll  289 (295)
                      ||++||+.||.++
T Consensus       211 ~~~~D~~~ae~~~  223 (223)
T cd02513         211 DTEEDFELAEALL  223 (223)
T ss_pred             CCHHHHHHHHHhC
Confidence            9999999999864

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=99.96  E-value=1.6e-27  Score=204.84  Aligned_cols=214  Identities=22%  Similarity=0.336  Sum_probs=161.2

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHH-HcCCeEEeCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQ-QFGADVIMTSES  119 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~-~~~~~v~~~~~~  119 (295)
                      +|++.+||||||.|+||+   ||++++++|+||++|+++.+..++.+++|+|+++.++..   ++.. ..+-.+..    
T Consensus         2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~----   77 (230)
T COG1211           2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEV----   77 (230)
T ss_pred             CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEEE----
Confidence            467889999999999997   899999999999999999999999999999999864433   3321 11122211    


Q ss_pred             CCCcH---HHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555          120 CRNGT---ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN  195 (295)
Q Consensus       120 ~~g~~---~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~  195 (295)
                      ..||.   .+++++++.+.. +.++||+|++.+||++.+.|+++++...+ .++++.+  .++.       ++.|. .++
T Consensus        78 v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~-~~aai~a--lpv~-------DTik~-~~~  146 (230)
T COG1211          78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADK-YGAAILA--LPVT-------DTLKR-VDA  146 (230)
T ss_pred             ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhcc-CCcEEEE--eecc-------CcEEE-ecC
Confidence            22444   468999998863 47899999999999999999999954443 3444433  4443       45653 455


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhhh-CCceEEEEEecCCc
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVLE-NGYKMKVIKVDHEA  273 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~~~~  273 (295)
                      +|.+..   .   ++|+..|..|||       |.|+.+.|...+. ......+.+|+.   .+++ .|.+|.+++++..+
T Consensus       147 ~~~i~~---t---~~R~~l~~~QTP-------Q~F~~~~L~~a~~~a~~~~~~~tDda---s~~e~~G~~v~lV~G~~~n  210 (230)
T COG1211         147 DGNIVE---T---VDRSGLWAAQTP-------QAFRLELLKQALARAFAEGREITDDA---SAIEKAGGPVSLVEGSADN  210 (230)
T ss_pred             CCCeee---c---cChhhhhhhhCC-------ccccHHHHHHHHHHHHhcCCCcCCHH---HHHHHcCCCeEEEecCcce
Confidence            666652   2   388899999999       9999999986443 322334556653   2333 69999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 022555          274 HGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~~  291 (295)
                      ++|+||+||+.|+.++.+
T Consensus       211 ~KiTtpeDL~~a~~il~~  228 (230)
T COG1211         211 FKITTPEDLEIAEAILRR  228 (230)
T ss_pred             eEecCHHHHHHHHHHhcC
Confidence            999999999999999875

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=99.95  E-value=1.5e-26  Score=201.72  Aligned_cols=216  Identities=21%  Similarity=0.327  Sum_probs=153.4

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC---CeE-EeCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG---ADV-IMTSES  119 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~---~~v-~~~~~~  119 (295)
                      +|++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++++.+..+.+...   ..+ +...  
T Consensus         1 ~~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (227)
T PRK00155          1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAG--   78 (227)
T ss_pred             CCceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCC--
Confidence            577899999999999994   8999999999999999999988766999999999766544433221   112 1211  


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA  199 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v  199 (295)
                      ..+...++..|+..+. +.|.+++++||+||+++++++++++.+.++ +.++.+  .++.       +.++.+ +++|.+
T Consensus        79 ~~~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~~~~v-~~~g~~  146 (227)
T PRK00155         79 GAERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEET-GAAILA--VPVK-------DTIKRS-DDGGGI  146 (227)
T ss_pred             cchHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CCEEEE--Eecc-------ccEEEE-cCCCce
Confidence            1134567888988874 357999999999999999999999988765 443333  2331       224433 556665


Q ss_pred             EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCC
Q 022555          200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idId  277 (295)
                      ...     + +|+..+..|+|       |+|+.+.|..+.. ....++..+|..   .++ ..|.++..++.+..++|||
T Consensus       147 ~~~-----~-~r~~~~~~~~p-------~~f~~~~l~~~~~~~~~~~~~~~d~~---~~~~~~~~~i~~~~~~~~~~~Id  210 (227)
T PRK00155        147 VDT-----P-DRSGLWAAQTP-------QGFRIELLREALARALAEGKTITDDA---SAVERLGKPVRLVEGRYDNIKIT  210 (227)
T ss_pred             eec-----C-ChHHheeeeCC-------ccchHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCCeEEEecCcccccCC
Confidence            421     2 44444455566       9999999886543 222233334432   222 3688899999888899999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022555          278 APEDVEKIESFMRER  292 (295)
Q Consensus       278 tpeDl~~ae~ll~~r  292 (295)
                      ||+||+.||.++++|
T Consensus       211 t~~Dl~~ae~~~~~~  225 (227)
T PRK00155        211 TPEDLALAEAILKRR  225 (227)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999999876

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=3.6e-26  Score=190.44  Aligned_cols=218  Identities=20%  Similarity=0.225  Sum_probs=168.3

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeE-EeCCCCCCCcHH
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADV-IMTSESCRNGTE  125 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v-~~~~~~~~g~~~  125 (295)
                      ||+..|||||+|+|+|.++|++..++|+|||.|++++++.++.+|+|+|.+++++|.+.++++|+.+ +.+|+++..+.+
T Consensus         1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a   80 (228)
T COG1083           1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA   80 (228)
T ss_pred             CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCch
Confidence            5788999999999999999999999999999999999999999999999999999999999999998 788877766543


Q ss_pred             H----HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          126 R----CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       126 ~----i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      +    +.++++......+.++.++++.||++..+|++.++.|.+ ..+++++++  +..    .+|  +|-..+++|.+.
T Consensus        81 st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~--e~e----~~p--~k~f~~~~~~~~  152 (228)
T COG1083          81 STIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAV--ECE----HHP--YKAFSLNNGEVK  152 (228)
T ss_pred             hHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEe--ecc----cch--HHHHHhcCCcee
Confidence            2    456666665556789999999999999999999999976 356777663  432    122  222344567776


Q ss_pred             EeecCCCCCCCCCCCCCCCCc--eEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCC
Q 022555          201 YFSRGLIPYNKSGKVNPQFPY--LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVD  277 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~--~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idId  277 (295)
                      .+.+.+-.    .+++|+.|.  .-|..+|+++.+.|.+-..                .  .+.+..+++++ ...+|||
T Consensus       153 ~~~~~~~~----~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~~----------------~--f~~~~~~y~m~~~~~~DID  210 (228)
T COG1083         153 PVNEDPDF----ETRRQDLPKAYRENGAIYINKKDALLENDC----------------F--FIPNTILYEMPEDESIDID  210 (228)
T ss_pred             ecccCCcc----ccccccchhhhhhcCcEEEehHHHHhhcCc----------------e--ecCCceEEEcCcccccccc
Confidence            55444211    255788885  4478999999987642211                1  23345566665 6899999


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 022555          278 APEDVEKIESFMRERNL  294 (295)
Q Consensus       278 tpeDl~~ae~ll~~r~~  294 (295)
                      +++||+.||.++..++.
T Consensus       211 ~~~Dl~iae~l~~~~~~  227 (228)
T COG1083         211 TELDLEIAENLIFLKEE  227 (228)
T ss_pred             cHHhHHHHHHHhhhhhc
Confidence            99999999999987654

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=2.7e-25  Score=201.98  Aligned_cols=231  Identities=22%  Similarity=0.286  Sum_probs=172.2

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-CCeEEeCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCR  121 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-~~~v~~~~~~~~  121 (295)
                      |+..+||||||+|+||.   ||-|.+++|+||++|+++++... ..+++++|.+  .+.+++.+.+. ++.++.+.+ ..
T Consensus         1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q~e-ql   78 (460)
T COG1207           1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAERDDVEFVLQEE-QL   78 (460)
T ss_pred             CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccccCceEEEecc-cC
Confidence            45679999999999996   89999999999999999999987 4889998887  46666655533 377766644 33


Q ss_pred             CcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555          122 NGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA  199 (295)
Q Consensus       122 g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v  199 (295)
                      |..++++.|+..+..+ ...+|++.+|.||+++++|++|++.+.+.. +.++++....     .+|..| +++.+++|.+
T Consensus        79 GTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~-~~~tvLt~~~-----~dP~GYGRIvr~~~g~V  152 (460)
T COG1207          79 GTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHG-AAATVLTAEL-----DDPTGYGRIVRDGNGEV  152 (460)
T ss_pred             ChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcC-CceEEEEEEc-----CCCCCcceEEEcCCCcE
Confidence            4456788899888423 347999999999999999999999887542 2334444443     466655 4456778888


Q ss_pred             EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCC----CCCCcccchhhhhhhhhCCceEEEEEec--CC
Q 022555          200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLH----PTPLQLEEDLEQLKVLENGYKMKVIKVD--HE  272 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~----~~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~  272 (295)
                      ..+.|     +++....|+....+|+|+|+|+.+.|.++. ++.    +.++.++|-+..  +...|.+|..+..+  .+
T Consensus       153 ~~IVE-----~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i--~~~~g~~V~a~~~~d~~E  225 (460)
T COG1207         153 TAIVE-----EKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAI--ARNEGEKVRAVHVDDEEE  225 (460)
T ss_pred             EEEEE-----cCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHH--HHhCCCeEEEEecCchHH
Confidence            87655     445544566678999999999999887643 333    224444554421  22378999999875  47


Q ss_pred             cCCCCCHHHHHHHHHHHHHhc
Q 022555          273 AHGVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       273 ~idIdtpeDl~~ae~ll~~r~  293 (295)
                      .+.|++...|..+|++|++|.
T Consensus       226 ~~GVN~R~qLa~~e~~~q~r~  246 (460)
T COG1207         226 VLGVNDRVQLAEAERIMQRRI  246 (460)
T ss_pred             hcCcCcHHHHHHHHHHHHHHH
Confidence            899999999999999999883

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=5.7e-25  Score=210.45  Aligned_cols=229  Identities=17%  Similarity=0.212  Sum_probs=160.5

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCc
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG  123 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~  123 (295)
                      ++.+||||||+|+||+   ||+|++++|+|||+|+++++++. .+++|+|+++.  +.+.+++...++.++.++ ...|.
T Consensus         5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~Gt   82 (456)
T PRK14356          5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPDEDARFVLQE-QQLGT   82 (456)
T ss_pred             ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccccCceEEEcC-CCCCc
Confidence            3679999999999995   89999999999999999999887 48899888864  555555544456666553 23455


Q ss_pred             HHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          124 TERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       124 ~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      ..++..++..+.. +.+.+++++||+||+++++++.+++.+. ..+..  +...++     .+|..++++..++|++..|
T Consensus        83 ~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~--l~~~~~-----~~~~~~g~v~~~~g~V~~~  154 (456)
T PRK14356         83 GHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLA--FMTLTL-----PDPGAYGRVVRRNGHVAAI  154 (456)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEE--EEEEEc-----CCCCCceEEEEcCCeEEEE
Confidence            5678888887742 2478999999999999999999998876 33333  322333     2344555555568899888


Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCC----CCCcccchhhhhhhhhCCceEEEEEecC--CcCC
Q 022555          203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDH--EAHG  275 (295)
Q Consensus       203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~id  275 (295)
                      .+++-.   +.......+..+++|+|+|++++|..+. .+..    .+++.++.+.  .++..|.++..+..+.  .|+|
T Consensus       155 ~ek~~~---~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~--~~~~~g~~v~~~~~~~~~~~~~  229 (456)
T PRK14356        155 VEAKDY---DEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVG--LAVAEGMNVLGVNCGEDPNLLG  229 (456)
T ss_pred             EECCCC---ChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHH--HHHHCCCeEEEEEcCCcCeEec
Confidence            776421   1000111245789999999999876542 2211    1233333321  2335788999998753  6799


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 022555          276 VDAPEDVEKIESFMRER  292 (295)
Q Consensus       276 IdtpeDl~~ae~ll~~r  292 (295)
                      ||||+||..|+.++.++
T Consensus       230 I~tp~dl~~a~~~l~~~  246 (456)
T PRK14356        230 VNTPAELVRSEELLRAR  246 (456)
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999999865

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=99.94  E-value=1.6e-25  Score=193.80  Aligned_cols=208  Identities=20%  Similarity=0.348  Sum_probs=146.4

Q ss_pred             EEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC----CeEEeCCCCCCCcH
Q 022555           52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG----ADVIMTSESCRNGT  124 (295)
Q Consensus        52 aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~----~~v~~~~~~~~g~~  124 (295)
                      +||||||.|+||+   ||+|++++|+|||+|+++++.+++.+++|+|+++++....+....+    +.++ ..  ..+..
T Consensus         2 aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~   78 (217)
T TIGR00453         2 AVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIV-AG--GDTRQ   78 (217)
T ss_pred             EEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEe-CC--CchHH
Confidence            7999999999997   7999999999999999999998756999999998764433322222    2222 11  11244


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      .+++.|+..+. +.|.+++++||+||+++++++++++.+.++ +.++.+  .++.       +.++ .++++|.+..+. 
T Consensus        79 ~sl~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~v~-~~~~~g~~~~~~-  145 (217)
T TIGR00453        79 DSVRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKA-GAAILA--LPVA-------DTLK-RVEADGFIVETV-  145 (217)
T ss_pred             HHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CcEEEe--Eecc-------ceEE-EEcCCCceeecC-
Confidence            67888998772 358999999999999999999999988764 332222  2321       2333 245667654321 


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHH
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE  283 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~  283 (295)
                           +|+..+..++|       |+|+.+.|..+.. ....+++.+|....  +...|.++..++++..++|||||+||+
T Consensus       146 -----~r~~~~~~~~p-------~~f~~~~l~~~~~~~~~~~~~~~d~~~~--~~~~g~~i~~~~~~~~~~~I~~~~Dl~  211 (217)
T TIGR00453       146 -----DREGLWAAQTP-------QAFRTELLKKALARAKEEGFEITDDASA--VEKLGGKVALVEGDALNFKITTPEDLA  211 (217)
T ss_pred             -----ChHHeEEEeCC-------CcccHHHHHHHHHHHHhcCCCCCcHHHH--HHHcCCCeEEEecCccccccCCHHHHH
Confidence                 34334444455       9999999886543 23334555655432  234689999999988889999999999


Q ss_pred             HHHHHH
Q 022555          284 KIESFM  289 (295)
Q Consensus       284 ~ae~ll  289 (295)
                      .|++++
T Consensus       212 ~ae~~~  217 (217)
T TIGR00453       212 LAEALL  217 (217)
T ss_pred             HHHHhC
Confidence            999864

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.94  E-value=3.1e-24  Score=193.88  Aligned_cols=222  Identities=12%  Similarity=0.108  Sum_probs=151.5

Q ss_pred             ceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH------------
Q 022555           49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------  108 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------  108 (295)
                      ++.|||||||.||||.      ||+|+|++|+|+|+|+++.+.++ ++++|+|++++  +.+.++...            
T Consensus         3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~   81 (297)
T TIGR01105         3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV   81 (297)
T ss_pred             ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence            4569999999999995      79999999999999999999987 59999999973  555555431            


Q ss_pred             -------------cCCeEEeCC-CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-------HHHHHHHHHHHhCC
Q 022555          109 -------------FGADVIMTS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP  167 (295)
Q Consensus       109 -------------~~~~v~~~~-~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~~  167 (295)
                                   +++++.+.. ++..|..++++.|...++  .+.|+++.+|. ++++       .++.++++.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~  158 (297)
T TIGR01105        82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DNPFVVVLPDI-IIDDATADPLRYNLAAMIARFNETG  158 (297)
T ss_pred             chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CCCEEEEECCe-eccccccccchhHHHHHHHHHHHhC
Confidence                         244443322 223344467889998884  35688889997 5543       48889999886543


Q ss_pred             CcEEEEeeeeCCCCCCCCCCceEEE-E----CCCCe---EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555          168 DAVFSTAVTSLKPEDAFDPNRVKCV-V----DNHGY---AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP  239 (295)
Q Consensus       168 d~~v~v~~~~~~~~~~~~p~~~~v~-~----d~~g~---v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~  239 (295)
                      ..++.+  ..+.    .++..++++ .    |++|.   |..|.|||.. +     .+....++++|+|+|++++|..+.
T Consensus       159 ~~~~~~--~~~~----~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~  226 (297)
T TIGR01105       159 RSQVLA--KRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWAELE  226 (297)
T ss_pred             CcEEEE--EEcC----CCCccceEEEecccccCCCCeeeEeEEEECCCC-c-----ccCCcCEEEEEEEEECHHHHHHHh
Confidence            333322  2221    134556554 3    33564   4677787531 1     111246899999999999988665


Q ss_pred             cCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555          240 GLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       240 ~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll  289 (295)
                      ...++   +++.+|.+   ..+..+.++..+..++.|+||++|+||..|+.-+
T Consensus       227 ~~~~~~~ge~~ltd~i---~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       227 RTEPGAWGRIQLTDAI---AELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             cCCCCCCCeeeHHHHH---HHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence            54332   34445543   2223345799998888999999999999996543

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.93  E-value=5.3e-24  Score=191.92  Aligned_cols=219  Identities=18%  Similarity=0.228  Sum_probs=152.6

Q ss_pred             eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCC
Q 022555           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTS  117 (295)
Q Consensus        50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~  117 (295)
                      +.+||||||.||||.      ||+|+|++|||||+|+++.+..+ ++++|+|++..   +.+.+++.   ++++++.+..
T Consensus         4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~   82 (292)
T PRK15480          4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKV   82 (292)
T ss_pred             eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEEE
Confidence            669999999999994      79999999999999999999988 59999877642   44555543   3455542222


Q ss_pred             CCCCCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEE-EC
Q 022555          118 ESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCV-VD  194 (295)
Q Consensus       118 ~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~-~d  194 (295)
                      +..+.| ..++..|...+.  .+.++++.+|.+|. ..++..+++.+.+. .++  ++...++     .+|..++++ .|
T Consensus        83 q~~~~Gta~Al~~a~~~i~--~~~~~lv~gD~i~~-~~~l~~ll~~~~~~~~~~--tv~~~~v-----~~p~~yGvv~~d  152 (292)
T PRK15480         83 QPSPDGLAQAFIIGEEFIG--GDDCALVLGDNIFY-GHDLPKLMEAAVNKESGA--TVFAYHV-----NDPERYGVVEFD  152 (292)
T ss_pred             CCCCCCHHHHHHHHHHHhC--CCCEEEEECCeeee-ccCHHHHHHHHHhCCCCe--EEEEEEc-----CCcccCcEEEEC
Confidence            222334 456778888884  24477888999775 45789999888653 233  3332343     245555553 57


Q ss_pred             CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecC
Q 022555          195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDH  271 (295)
Q Consensus       195 ~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~  271 (295)
                      ++|++..+.|||..         ......++|+|+|+++++.....+.++   +++++|.+.  .++..|..+..+..++
T Consensus       153 ~~g~v~~i~EKP~~---------p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~--~~l~~g~~~~~~~~~g  221 (292)
T PRK15480        153 QNGTAISLEEKPLQ---------PKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINR--IYMEQGRLSVAMMGRG  221 (292)
T ss_pred             CCCcEEEEEECCCC---------CCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHH--HHHhcCCeEEEEecCC
Confidence            78899989888531         124678999999999998876554443   355665432  3455676444445555


Q ss_pred             -CcCCCCCHHHHHHHHHHHH
Q 022555          272 -EAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       272 -~~idIdtpeDl~~ae~ll~  290 (295)
                       .|+|++||+||..|+.+++
T Consensus       222 ~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        222 YAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             cEEECCCCHHHHHHHHHHHH
Confidence             5999999999999999887

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=99.93  E-value=1.1e-24  Score=202.24  Aligned_cols=207  Identities=22%  Similarity=0.286  Sum_probs=148.1

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCe-EEeCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GAD-VIMTSESCR  121 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~-v~~~~~~~~  121 (295)
                      ||++.+||||||+|+||+   ||++++++|+|||+|+++++.+++.+++|+|+++++......... +.. +.... ...
T Consensus         3 mm~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~-gG~   81 (378)
T PRK09382          3 MSDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVT-GGA   81 (378)
T ss_pred             CCcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccCCeEEEeC-CCc
Confidence            678899999999999995   799999999999999999999887689999999865433221111 111 11111 112


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      +...++++|++.+.  .+++++++||+||++++.++++++.+.+. ++++.+  .+++       ++.+...     .  
T Consensus        82 ~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~-~a~i~~--~pv~-------Dtik~~~-----~--  142 (378)
T PRK09382         82 TRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKA-DCVLPA--LPVA-------DTLKRAN-----E--  142 (378)
T ss_pred             hHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcC-CeEEEE--EEec-------cCcEEee-----e--
Confidence            23467899999884  48999999999999999999999987654 444333  3432       1232110     0  


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPED  281 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeD  281 (295)
                            ..+|+..+..|+|       |.|+...+....+   .+.+.+|...  .+...|.+|.+++++..|+|||||+|
T Consensus       143 ------tldR~~l~~~QTP-------Q~f~~~~l~~a~~---~~~~~TDd~s--l~~~~G~~V~~v~g~~~n~KITtpeD  204 (378)
T PRK09382        143 ------TVDREGLKLIQTP-------QLSRTKTLKAAAD---GRGDFTDDSS--AAEAAGGKVALVEGSEDLHKLTYKED  204 (378)
T ss_pred             ------EcCcccEEEEECC-------CCCCHHHHHHHHh---CCCCcccHHH--HHHHcCCcEEEEECCCcccCCCCHHH
Confidence                  0156666667889       8998887764221   2344566542  23347999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 022555          282 VEKIESFMRE  291 (295)
Q Consensus       282 l~~ae~ll~~  291 (295)
                      |..|+.+++.
T Consensus       205 L~~A~~~l~~  214 (378)
T PRK09382        205 LKMADLLLSP  214 (378)
T ss_pred             HHHHHHHhcc
Confidence            9999999865

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=4.1e-24  Score=204.02  Aligned_cols=231  Identities=17%  Similarity=0.223  Sum_probs=158.2

Q ss_pred             CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcC--CeEEeCCC
Q 022555           46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFG--ADVIMTSE  118 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~--~~v~~~~~  118 (295)
                      .||++.+||||||.|+||+   ||+|++++|+|||+|+++++++++ +++|+|+++.  +.+.+++.+++  +.++.. .
T Consensus         2 ~~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~g-i~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~-~   79 (446)
T PRK14353          2 TDRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASLG-PSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQ-K   79 (446)
T ss_pred             ccccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhCC-CCcEEEEECCCHHHHHHHhhccCCCceEEEc-C
Confidence            4677899999999999995   899999999999999999999884 8999988873  55666555443  233332 2


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~  198 (295)
                      ...|...+++.++..+....+.+++++||+||++++.++.+++.+.+..+..+  ...+..     ++..+..+..++|+
T Consensus        80 ~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i--~~~~~~-----~~~~~g~~~~~~g~  152 (446)
T PRK14353         80 ERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADVVV--LGFRAA-----DPTGYGRLIVKGGR  152 (446)
T ss_pred             CCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEE--EEEEeC-----CCCcceEEEECCCe
Confidence            33455667888888774224679999999999999999999986554444433  223331     23334322225788


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec-CC
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD-HE  272 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~  272 (295)
                      +..+.+++.+.+     .+......++|+|+|+++.|.. +.....    .+...++.+  ..++..|.++.+++.+ ..
T Consensus       153 v~~~~ek~~~~~-----~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~--~~l~~~g~~v~~~~~~~~~  225 (446)
T PRK14353        153 LVAIVEEKDASD-----EERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIV--AIARAEGLRVAVVEAPEDE  225 (446)
T ss_pred             EEEEEECCCCCh-----HHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHH--HHHHHCCCeEEEEecChhh
Confidence            888877642100     0111256789999999877643 332211    122222322  2334578899999986 56


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 022555          273 AHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       273 ~idIdtpeDl~~ae~ll~~r  292 (295)
                      |+|||||+||..|+++++.+
T Consensus       226 ~~~I~t~~dl~~a~~~~~~~  245 (446)
T PRK14353        226 VRGINSRAELAEAEAVWQAR  245 (446)
T ss_pred             cccCCCHHHHHHHHHHHHHH
Confidence            89999999999999888654

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.93  E-value=5e-24  Score=184.26  Aligned_cols=211  Identities=21%  Similarity=0.253  Sum_probs=147.2

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH---cCCeE-EeCCCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADV-IMTSES  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~---~~~~v-~~~~~~  119 (295)
                      |||||||.|+||+      ||+|++++|+|||+|+++.+.+. ++++|+|+++  .+.+.+++..   .++.+ +..+..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (223)
T cd06915           1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE   79 (223)
T ss_pred             CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence            6899999999995      79999999999999999999987 4999999998  4556666543   24444 223333


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA  199 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v  199 (295)
                      ..|...++..+++.+.  .+.+++++||+|+  +.++.++++.+.+. +...++.+.+..  +  .+....+..+++|++
T Consensus        80 ~~G~~~~l~~a~~~~~--~~~~lv~~~D~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~--~--~~~~~~v~~d~~~~v  150 (223)
T cd06915          80 PLGTGGAIKNALPKLP--EDQFLVLNGDTYF--DVDLLALLAALRAS-GADATMALRRVP--D--ASRYGNVTVDGDGRV  150 (223)
T ss_pred             CCcchHHHHHHHhhcC--CCCEEEEECCccc--CCCHHHHHHHHHhC-CCcEEEEEEECC--C--CCcceeEEECCCCeE
Confidence            4455567888998883  4679999999976  35688898888653 222233333432  1  122334456778899


Q ss_pred             EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCH
Q 022555          200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP  279 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtp  279 (295)
                      ..+.+++.         +......++|+|+|++++|..+.... ... .++.+  ..++..| +|.+++.++.|+|||||
T Consensus       151 ~~~~ek~~---------~~~~~~~~~Giy~~~~~~l~~~~~~~-~~~-~~~~~--~~l~~~~-~v~~~~~~~~~~dI~t~  216 (223)
T cd06915         151 IAFVEKGP---------GAAPGLINGGVYLLRKEILAEIPADA-FSL-EADVL--PALVKRG-RLYGFEVDGYFIDIGIP  216 (223)
T ss_pred             EEEEeCCC---------CCCCCcEEEEEEEECHHHHhhCCccC-CCh-HHHHH--HHHHhcC-cEEEEecCCeEEecCCH
Confidence            88877642         11246789999999999997654321 111 12222  1234456 89999988899999999


Q ss_pred             HHHHHHH
Q 022555          280 EDVEKIE  286 (295)
Q Consensus       280 eDl~~ae  286 (295)
                      +||..|+
T Consensus       217 ~dl~~a~  223 (223)
T cd06915         217 EDYARAQ  223 (223)
T ss_pred             HHHHhhC
Confidence            9999873

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.93  E-value=1.4e-23  Score=184.28  Aligned_cols=217  Identities=19%  Similarity=0.232  Sum_probs=148.3

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCCC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE  118 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~~  118 (295)
                      .+||||||.|+||.      ||+|+|++|+|||+|+++++.+. ++++|+|+++.   +.+.+++.   ++++++.+..+
T Consensus         2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~   80 (240)
T cd02538           2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ   80 (240)
T ss_pred             eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence            49999999999994      79999999999999999999987 59999998863   34555543   24555533322


Q ss_pred             C-CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceE-EEECC
Q 022555          119 S-CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDN  195 (295)
Q Consensus       119 ~-~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~  195 (295)
                      . ..|...++..+...+.  .+.++++.||+|+.+ .++.++++.+.+ +.+..  +...++.     +|..+. +..|+
T Consensus        81 ~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~g~v~~d~  150 (240)
T cd02538          81 PKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYG-QGLSPILQRAAAQKEGAT--VFGYEVN-----DPERYGVVEFDE  150 (240)
T ss_pred             CCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEcc-HHHHHHHHHHHhcCCCcE--EEEEECC-----chhcCceEEecC
Confidence            2 2334456888888874  467899999998764 478899988764 33333  3333432     222333 34677


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEec--
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVD--  270 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~--  270 (295)
                      +|++..+.+||.         +.....+++|+|+|++++|+.+....++   +++.++.+.  .++..| ++.+...+  
T Consensus       151 ~g~v~~~~ekp~---------~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~--~l~~~g-~~~~~~~~~~  218 (240)
T cd02538         151 NGRVLSIEEKPK---------KPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNN--EYLEKG-KLSVELLGRG  218 (240)
T ss_pred             CCcEEEEEECCC---------CCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHH--HHHHhC-CeEEEEeCCC
Confidence            889998888742         1123578999999999988755433222   233334332  234455 34555544  


Q ss_pred             CCcCCCCCHHHHHHHHHHHH
Q 022555          271 HEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       271 ~~~idIdtpeDl~~ae~ll~  290 (295)
                      ++|+||+||+||..|+++++
T Consensus       219 g~w~digt~~~~~~a~~~~~  238 (240)
T cd02538         219 FAWLDTGTHESLLEASNFVQ  238 (240)
T ss_pred             cEEEeCCCHHHHHHHHHHHh
Confidence            79999999999999999875

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.9e-23  Score=200.22  Aligned_cols=231  Identities=18%  Similarity=0.210  Sum_probs=162.9

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-CCeEEeCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESC  120 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~-~~~v~~~~~~~  120 (295)
                      |.++.+||||||.|+||+   ||+|++++|+|||+|+++++.++ +++++++++++  +++.+++.+. .+.++..+ ..
T Consensus         1 m~~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~~-~~   78 (459)
T PRK14355          1 MNNLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGDGDVSFALQE-EQ   78 (459)
T ss_pred             CCcceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccCCceEEEecC-CC
Confidence            345789999999999996   69999999999999999999988 59999998874  5566655432 33343332 23


Q ss_pred             CCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA  199 (295)
Q Consensus       121 ~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v  199 (295)
                      .|...++..++..+....+.++++++|+||+++++++++++.+... ++.+++...+.     .+|..+ .+..|++|++
T Consensus        79 ~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-~~~~~v~~~~~-----~~~~~~g~v~~d~~g~v  152 (459)
T PRK14355         79 LGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-GAAVTVLTARL-----ENPFGYGRIVRDADGRV  152 (459)
T ss_pred             CCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-CCcEEEEEEEc-----CCCCcCCEEEEcCCCCE
Confidence            3445678888888753347899999999999999999999988754 44445443333     123333 3346778889


Q ss_pred             EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEecCC--
Q 022555          200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDHE--  272 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~~--  272 (295)
                      ..+.+++.. .    .+++.....++|+|+|++++|.. +..+.+    .+.+.+|.+  ..++..|.++..++.+++  
T Consensus       153 ~~~~ek~~~-~----~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i--~~l~~~g~~v~~~~~~~~~~  225 (459)
T PRK14355        153 LRIVEEKDA-T----PEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIV--AMAAAEGLRCLAFPVADPDE  225 (459)
T ss_pred             EEEEEcCCC-C----hhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHH--HHHHHCCCeEEEEEcCCHHH
Confidence            888776421 1    11222357899999999997644 332222    223344443  234567889999998765  


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 022555          273 AHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       273 ~idIdtpeDl~~ae~ll~~r  292 (295)
                      |+||++|+||..|+.++..+
T Consensus       226 ~~~i~~~~~~~~a~~~l~~~  245 (459)
T PRK14355        226 IMGVNDRAQLAEAARVLRRR  245 (459)
T ss_pred             hcCCCCHHHHHHHHHHHHHH
Confidence            99999999999998877653

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.4e-23  Score=194.46  Aligned_cols=221  Identities=21%  Similarity=0.264  Sum_probs=158.5

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH---cCCeEEeCCCC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADVIMTSES  119 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~---~~~~v~~~~~~  119 (295)
                      .|||||||.||||.      ||||+|++|||||+|+++.|++. ++++|+|+++  .+.+++++.+   .++.+.+..+.
T Consensus         3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~   81 (358)
T COG1208           3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK   81 (358)
T ss_pred             eEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcccccCCceEEEecC
Confidence            49999999999994      79999999999999999999987 5999999997  4777777764   35665443333


Q ss_pred             CC-CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-ECCC-
Q 022555          120 CR-NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNH-  196 (295)
Q Consensus       120 ~~-g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~-  196 (295)
                      .+ |...++.++...+.  .+.|+++++|. +.+. +++.+++.++++ +...++....+.     +|..++++ .+++ 
T Consensus        82 ~~lGTag~l~~a~~~l~--~~~f~v~~GDv-~~~~-dl~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~Gvv~~~~~~  151 (358)
T COG1208          82 EPLGTAGALKNALDLLG--GDDFLVLNGDV-LTDL-DLSELLEFHKKK-GALATIALTRVL-----DPSEFGVVETDDGD  151 (358)
T ss_pred             CcCccHHHHHHHHHhcC--CCcEEEEECCe-eecc-CHHHHHHHHHhc-cCccEEEEEecC-----CCCcCceEEecCCC
Confidence            33 43457889999885  37899999999 4444 499999999876 444444433332     22233333 3433 


Q ss_pred             CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCC
Q 022555          197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGV  276 (295)
Q Consensus       197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idI  276 (295)
                      +++..|.++|.+       ....+..+|+|+|+|++++|+.+....+.+++. |.+  ..++..|.++..+..+++|+||
T Consensus       152 ~~v~~f~ekp~~-------~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~-~~~--~~l~~~~~~v~~~~~~g~W~di  221 (358)
T COG1208         152 GRVVEFREKPGP-------EEPPSNLINAGIYIFDPEVFDYIEKGERFDFEE-ELL--PALAAKGEDVYGYVFEGYWLDI  221 (358)
T ss_pred             ceEEEEEecCCC-------CCCCCceEEeEEEEECHHHhhhcccCCcccchh-hHH--HHHHhCCCcEEEEEeCCeEEeC
Confidence            589999998631       012247899999999999998333322233221 122  1334566679999988899999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 022555          277 DAPEDVEKIESFMRER  292 (295)
Q Consensus       277 dtpeDl~~ae~ll~~r  292 (295)
                      ++|+||..|++++.++
T Consensus       222 g~p~d~~~a~~~~~~~  237 (358)
T COG1208         222 GTPEDLLEANELLLRG  237 (358)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998863

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=5.1e-24  Score=187.51  Aligned_cols=221  Identities=22%  Similarity=0.236  Sum_probs=158.2

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHH-HHHH----HHcCCeEE
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKI-AECC----QQFGADVI  114 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i-~~~~----~~~~~~v~  114 (295)
                      ..+.||||.||.|+|+-      +||++|++++|||.|.++++.++ ++++|++.++  ++.+ .++.    ..+|++++
T Consensus         8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~   86 (371)
T KOG1322|consen    8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEIL   86 (371)
T ss_pred             cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEE
Confidence            34669999999999994      79999999999999999999998 5999999997  3322 2333    34577776


Q ss_pred             eCCCCCCCcHHH-HHHHHHHccccCC-EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-
Q 022555          115 MTSESCRNGTER-CNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-  191 (295)
Q Consensus       115 ~~~~~~~g~~~~-i~~al~~~~~~~d-~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-  191 (295)
                      .-.+..+.++.+ +..|-+.+....| .|+++++|.  +-.-.+.++++.|+++ ++..++.++++.     +|..|++ 
T Consensus        87 ~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDv--i~~~p~~~~vqfH~~~-gae~TI~~t~vd-----epSkyGvv  158 (371)
T KOG1322|consen   87 ASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDV--ICRMPYKEMVQFHRAH-GAEITIVVTKVD-----EPSKYGVV  158 (371)
T ss_pred             EEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCe--eecCCHHHHHHHHHhc-CCceEEEEEecc-----CccccceE
Confidence            533333333332 2233333322223 799999998  3456789999999875 344566566663     2445544 


Q ss_pred             EECC-CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec
Q 022555          192 VVDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD  270 (295)
Q Consensus       192 ~~d~-~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~  270 (295)
                      +.|+ .|+|..|.|||..+         .....|+|+|+|++++|+.+. ..|++++.+ .+   +.+..+++++++..+
T Consensus       159 ~~d~~~grV~~F~EKPkd~---------vsnkinaGiYi~~~~vL~ri~-~~ptSiekE-if---P~~a~~~~l~a~~l~  224 (371)
T KOG1322|consen  159 VIDEDTGRVIRFVEKPKDL---------VSNKINAGIYILNPEVLDRIL-LRPTSIEKE-IF---PAMAEEHQLYAFDLP  224 (371)
T ss_pred             EEecCCCceeEehhCchhh---------hhccccceEEEECHHHHhHhh-hcccchhhh-hh---hhhhhcCceEEEecC
Confidence            3566 79999999996421         145678999999999999766 445554432 11   355677889999999


Q ss_pred             CCcCCCCCHHHHHHHHHHHHH
Q 022555          271 HEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       271 ~~~idIdtpeDl~~ae~ll~~  291 (295)
                      ++|.||++|.||..+-.++.+
T Consensus       225 gfWmDIGqpkdf~~g~~~Yl~  245 (371)
T KOG1322|consen  225 GFWMDIGQPKDFLTGFSFYLR  245 (371)
T ss_pred             chhhhcCCHHHHHHHHHHHHh
Confidence            999999999999999887765

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=99.92  E-value=4.9e-24  Score=184.33  Aligned_cols=207  Identities=22%  Similarity=0.338  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHH--Hc--CCeE-EeCCCCCC
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ--QF--GADV-IMTSESCR  121 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~--~~--~~~v-~~~~~~~~  121 (295)
                      +.+||||||+|+||+   +|++++++|+|||+|+++++.+++.+++|+|+++++.......  .+  ...+ +...  ..
T Consensus         1 ~~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (218)
T cd02516           1 VAAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEG--GA   78 (218)
T ss_pred             CEEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECC--ch
Confidence            358999999999996   6999999999999999999998766899999998654433221  11  1122 2221  12


Q ss_pred             CcHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       122 g~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      +...++..|+..+. .+.+.+++++||+||+++++++++++.+.+. +..+.+  .++.       +.++ ..|++|.+.
T Consensus        79 ~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------~~~~-~~~~~g~~~  147 (218)
T cd02516          79 TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY-GAAIPA--VPVT-------DTIK-RVDDDGVVV  147 (218)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC-CcEEEE--Eecc-------ccEE-EecCCCcee
Confidence            34567999999874 2468999999999999999999999988654 443333  2221       1222 256677775


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCC
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDA  278 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdt  278 (295)
                      .+.      +|+..+..++|       ++|+.+.|..+... .......+|..   .++ ..|.++..++.+..++||||
T Consensus       148 ~~~------~r~~~~~~~~P-------~~f~~~~~~~~~~~~~~~~~~~td~~---~~~~~~~~~v~~v~~~~~~~~i~t  211 (218)
T cd02516         148 ETL------DREKLWAAQTP-------QAFRLDLLLKAHRQASEEGEEFTDDA---SLVEAAGGKVALVEGSEDNIKITT  211 (218)
T ss_pred             ecC------ChHHhhhhcCC-------CcccHHHHHHHHHHHHhcCCCcCcHH---HHHHHcCCCeEEEecCcccccCCC
Confidence            321      45555566777       99999999875432 22334445432   233 36788999998888899999


Q ss_pred             HHHHHHH
Q 022555          279 PEDVEKI  285 (295)
Q Consensus       279 peDl~~a  285 (295)
                      |+||+.|
T Consensus       212 ~~dl~~~  218 (218)
T cd02516         212 PEDLALA  218 (218)
T ss_pred             HHHHhhC
Confidence            9999764

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.92  E-value=1.6e-23  Score=188.36  Aligned_cols=217  Identities=18%  Similarity=0.217  Sum_probs=149.7

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCCCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSES  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~~~  119 (295)
                      +||||||.|+||.      ||+|+|++|+|||+|+++.+..+ ++++|+|++..   +.+.+++.   ++++++.+..+.
T Consensus         2 aIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~   80 (286)
T TIGR01207         2 GIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQP   80 (286)
T ss_pred             EEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEcc
Confidence            8999999999994      79999999999999999999987 59999877753   34455443   245555333222


Q ss_pred             -CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCC
Q 022555          120 -CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHG  197 (295)
Q Consensus       120 -~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g  197 (295)
                       ..|...++..+...+.  .+.++++.+|++|. ..++..+++.+.+. +...++...++     .+|..+++ ..|++|
T Consensus        81 ~~~Gta~al~~a~~~l~--~~~~~li~gD~i~~-~~~l~~ll~~~~~~-~~~~ti~~~~v-----~~p~~yGvv~~d~~g  151 (286)
T TIGR01207        81 SPDGLAQAFIIGEDFIG--GDPSALVLGDNIFY-GHDLSDLLKRAAAR-ESGATVFAYQV-----SDPERYGVVEFDSNG  151 (286)
T ss_pred             CCCCHHHHHHHHHHHhC--CCCEEEEECCEecc-ccCHHHHHHHHHhc-CCCcEEEEEEc-----cCHHHCceEEECCCC
Confidence             3344467888888884  35677888999875 46788999887653 22223333343     24445554 367789


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEe-cCC-
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKV-DHE-  272 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~-~~~-  272 (295)
                      ++..+.|||.         .......++|+|+|++++++....+.++   +++.+|.+.  .++..|. +.+... ++. 
T Consensus       152 ~V~~i~EKp~---------~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~--~~l~~g~-l~v~~~~~g~~  219 (286)
T TIGR01207       152 RAISIEEKPA---------QPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNR--VYLEEGR-LSVELLGRGYA  219 (286)
T ss_pred             eEEEEEECCC---------CCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHH--HHHHcCC-cEEEEecCCCE
Confidence            9999988852         1124578999999999988765544432   355555432  3445664 333333 454 


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 022555          273 AHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       273 ~idIdtpeDl~~ae~ll~  290 (295)
                      |+||+||+||..|+.+++
T Consensus       220 W~DiGt~~~l~~A~~~~~  237 (286)
T TIGR01207       220 WLDTGTHDSLLEASNFIQ  237 (286)
T ss_pred             EEeCCCHHHHHHHHHHHH
Confidence            999999999999998876

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=2.3e-23  Score=197.83  Aligned_cols=221  Identities=25%  Similarity=0.317  Sum_probs=150.3

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc--CCeEEeCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF--GADVIMTSESC  120 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~--~~~v~~~~~~~  120 (295)
                      |++.+||||||.|+||+   ||+|+|++|+|||+|+++.+.+.  +++|+|+++  .+.+.+++.++  +++++..++..
T Consensus         1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~   78 (430)
T PRK14359          1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLEN   78 (430)
T ss_pred             CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCcc
Confidence            56789999999999995   79999999999999999999875  677888776  45666666554  45555443322


Q ss_pred             CCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeE
Q 022555          121 RNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA  199 (295)
Q Consensus       121 ~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v  199 (295)
                      ..+ ..++..    .....|.|++++||+||+++++++++++   ...+..++  +.++.     +|..++++..++|++
T Consensus        79 ~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---~~~~~~v~--~~~~~-----~~~~~g~v~~d~g~v  144 (430)
T PRK14359         79 YPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---NDADIVMS--VFHLA-----DPKGYGRVVIENGQV  144 (430)
T ss_pred             CCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---CCCCEEEE--EEEcC-----CCccCcEEEEcCCeE
Confidence            223 333433    2223578999999999999988887664   23343333  23432     233344333347888


Q ss_pred             EEeecCCCCCCCCCCCCCCC-CceEEEeEEEecHHHHhhccc-CCC----CCCcccchhhhhhhhhCCceEEEEEec-CC
Q 022555          200 IYFSRGLIPYNKSGKVNPQF-PYLLHLGIQSYDSNFLKIYPG-LHP----TPLQLEEDLEQLKVLENGYKMKVIKVD-HE  272 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~-p~~~~~Giyif~~~~l~~~~~-~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~  272 (295)
                      ..+.+++.. .     .++. .+..++|+|+|++++|..+.. ...    .++..+|.+  ..++..|.++..++.+ .+
T Consensus       145 ~~i~e~~~~-~-----~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i--~~l~~~g~~v~~~~~~~~~  216 (430)
T PRK14359        145 KKIVEQKDA-N-----EEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDII--ALAIEKGETIKAVFVDEEN  216 (430)
T ss_pred             EEEEECCCC-C-----cccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHH--HHHHHcCCeEEEEEcCCCE
Confidence            888766421 1     1222 357899999999999986532 221    123334433  2345678999999987 58


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 022555          273 AHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       273 ~idIdtpeDl~~ae~ll~~r  292 (295)
                      |+|||+|+||..|+.++.++
T Consensus       217 w~dI~t~~dl~~a~~~l~~~  236 (430)
T PRK14359        217 FMGVNSKFELAKAEEIMQER  236 (430)
T ss_pred             EeCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988765

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.92  E-value=2.2e-23  Score=181.39  Aligned_cols=216  Identities=22%  Similarity=0.317  Sum_probs=151.5

Q ss_pred             EEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555           52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER  126 (295)
Q Consensus        52 aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~~  126 (295)
                      |||||||.|+||+   ||+|++++|+|||+|+++++.+.+ +++|+|+++.  +.+.+++.++++.++.++. ..|...+
T Consensus         1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~~-i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~-~~g~~~a   78 (229)
T cd02540           1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARALG-PDRIVVVVGHGAEQVKKALANPNVEFVLQEE-QLGTGHA   78 (229)
T ss_pred             CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhCCCCcEEEECCC-CCCCHHH
Confidence            6899999999995   799999999999999999999885 8898888863  5666666666777665543 3455678


Q ss_pred             HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EEECCCCeEEEeecC
Q 022555          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRG  205 (295)
Q Consensus       127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~  205 (295)
                      +++|+..+..+.+.+++++||+||++++++.++++.+.+.. ..+++...++.     +|..+. +..+++|++..+.++
T Consensus        79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~-----~p~~~~~~~~~~~~~v~~~~ek  152 (229)
T cd02540          79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG-ADVTVLTAELE-----DPTGYGRIIRDGNGKVLRIVEE  152 (229)
T ss_pred             HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEEcC-----CCCCccEEEEcCCCCEEEEEEC
Confidence            99999888522578999999999999999999999887632 22233333332     333343 345667888877765


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec--CCcCCCCC
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD--HEAHGVDA  278 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~idIdt  278 (295)
                      +.. .    .++......++|+|+|+++.|.. +..+..    .+...++.+  ..++..|.+|.+++.+  ..|+.|++
T Consensus       153 ~~~-~----~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~--~~~~~~g~~v~~~~~~~~~~~~~~~~  225 (229)
T cd02540         153 KDA-T----EEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDII--ALAVADGLKVAAVLADDEEEVLGVND  225 (229)
T ss_pred             CCC-C----hHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHH--HHHHHCCCEEEEEEcCCcceEecCCC
Confidence            321 0    01111257899999999887654 333221    122233333  2345578899999886  58999999


Q ss_pred             HHHH
Q 022555          279 PEDV  282 (295)
Q Consensus       279 peDl  282 (295)
                      |+|+
T Consensus       226 ~~~~  229 (229)
T cd02540         226 RVQL  229 (229)
T ss_pred             hHhC
Confidence            9985

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.92  E-value=5.4e-23  Score=179.90  Aligned_cols=218  Identities=21%  Similarity=0.288  Sum_probs=150.9

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEe-CCC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIM-TSE  118 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~-~~~  118 (295)
                      .+||||||.|+||+      ||+|++++|+|||+|+++++.+. ++++|+|+++.  +.+.+++++   ++.++.. .+.
T Consensus         2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (236)
T cd04189           2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQE   80 (236)
T ss_pred             eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECC
Confidence            49999999999995      79999999999999999999987 59999999874  556565543   3455432 222


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-ECCCC
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHG  197 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~d~~g  197 (295)
                      ...|...++..|+..+.  .+.+++++||+.+ + ..+..+++.+.+.. ..+++.+.+..     +|..+.++ .| +|
T Consensus        81 ~~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~g~~~~d-~~  149 (236)
T cd04189          81 EPLGLAHAVLAARDFLG--DEPFVVYLGDNLI-Q-EGISPLVRDFLEED-ADASILLAEVE-----DPRRFGVAVVD-DG  149 (236)
T ss_pred             CCCChHHHHHHHHHhcC--CCCEEEEECCeec-C-cCHHHHHHHHHhcC-CceEEEEEECC-----CcccceEEEEc-CC
Confidence            23344567888888874  3568999999965 4 46778888776532 22333334432     23334333 44 45


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAH  274 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i  274 (295)
                      ++..+.+++..         ......++|+|+|+++++..+....++   ++..++.+  ..++..|.+|.+++.+++|+
T Consensus       150 ~v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~--~~~i~~g~~v~~~~~~~~~~  218 (236)
T cd04189         150 RIVRLVEKPKE---------PPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAI--QWLIDRGRRVGYSIVTGWWK  218 (236)
T ss_pred             eEEEEEECCCC---------CCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHH--HHHHHcCCcEEEEEcCceEE
Confidence            88877776421         113568999999999988765433222   22233333  23456788899999888899


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 022555          275 GVDAPEDVEKIESFMRE  291 (295)
Q Consensus       275 dIdtpeDl~~ae~ll~~  291 (295)
                      |||||+||..|+..+.+
T Consensus       219 ~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         219 DTGTPEDLLEANRLLLD  235 (236)
T ss_pred             eCCCHHHHHHHHHHHHh
Confidence            99999999999988754

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PRK10122 GalU regulator GalF; Provisional

Probab=99.91  E-value=1.6e-22  Score=182.95  Aligned_cols=222  Identities=12%  Similarity=0.108  Sum_probs=150.8

Q ss_pred             ceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH------------
Q 022555           49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------  108 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~------------  108 (295)
                      .+.|||||||.|+||.      ||+|+|++|+|+|+|+++++.++ ++++|+|+++.  +.+.++...            
T Consensus         3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~   81 (297)
T PRK10122          3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV   81 (297)
T ss_pred             ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcc
Confidence            4569999999999995      79999999999999999999998 59999999974  455544421            


Q ss_pred             -------------cCCeEEeCCC-CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-------HHHHHHHHHHHhCC
Q 022555          109 -------------FGADVIMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP  167 (295)
Q Consensus       109 -------------~~~~v~~~~~-~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-------~~i~~li~~~~~~~  167 (295)
                                   .++++.+..+ ...|...++..+...+.  .+.++++.+|. ++++       .++.++++.+.+..
T Consensus        82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~--~~~fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~  158 (297)
T PRK10122         82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG--DNPFVVVLPDV-VIDDASADPLRYNLAAMIARFNETG  158 (297)
T ss_pred             hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC--CCCEEEEECCe-eccCccccccchhHHHHHHHHHHhC
Confidence                         2344422222 22344467888988884  34578888998 6653       36899999887643


Q ss_pred             CcEEEEeeeeCCCCCCCCCCceEEE-EC----CCC---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555          168 DAVFSTAVTSLKPEDAFDPNRVKCV-VD----NHG---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP  239 (295)
Q Consensus       168 d~~v~v~~~~~~~~~~~~p~~~~v~-~d----~~g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~  239 (295)
                      ...+.+  ....    .++..++++ .+    ++|   +|..|.+||.. +     .+.....+++|+|+|++++|..+.
T Consensus       159 ~~~~~~--~~~~----~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~  226 (297)
T PRK10122        159 RSQVLA--KRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWPELE  226 (297)
T ss_pred             CcEEEE--EECC----CCCCCceEEEecCcccCCCCeeeEEEEEECCCC-c-----ccCCccEEEEEEEEECHHHHHHHH
Confidence            333222  2221    123444443 43    355   56778887521 1     111236799999999999988765


Q ss_pred             cCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555          240 GLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       240 ~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll  289 (295)
                      +..++   +++.+|.+.   .+..+.++.++..++.|+||++|+||..|..-+
T Consensus       227 ~~~~~~~~e~~ltd~i~---~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        227 RTEPGAWGRIQLTDAIA---ELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             hCCCCCCCeeeHHHHHH---HHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence            54332   234455442   223445799999989999999999999998776

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=194.80  Aligned_cols=229  Identities=18%  Similarity=0.228  Sum_probs=156.3

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |++.|||||||.|+||+   ||+|++++|+|||+|+++++.+. ++++++|+++.  +++.+++.. ++.++..+ ...+
T Consensus         1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-~~~~~~~~-~~~g   77 (458)
T PRK14354          1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-RSEFALQE-EQLG   77 (458)
T ss_pred             CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-CcEEEEcC-CCCC
Confidence            67789999999999995   89999999999999999999987 48998888763  445444432 34444432 3334


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EEECCCCeEEE
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIY  201 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~  201 (295)
                      ...+++.++..++...|.++++++|+||+++++++++++.+.+. ++..++......     +|..+. +..+++|++..
T Consensus        78 ~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-~~~~t~~~~~~~-----~~~~~g~v~~d~~~~V~~  151 (458)
T PRK14354         78 TGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-KAAATILTAIAE-----NPTGYGRIIRNENGEVEK  151 (458)
T ss_pred             HHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-CCceEEEEEEcC-----CCCCceEEEEcCCCCEEE
Confidence            45678888888753246899999999999999999999988653 222233222321     232232 33577888888


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC----CCCcccchhhhhhhhhCCceEEEEEec--CCcC
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVD--HEAH  274 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~i  274 (295)
                      +.+++..  +.   .+......++|+|+|+++.|.. +..+..    .+++.+|.+  ..++..|.++..++.+  ..++
T Consensus       152 ~~ek~~~--~~---~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~--~~l~~~g~~v~~~~~~g~~~~i  224 (458)
T PRK14354        152 IVEQKDA--TE---EEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVI--EILKNEGEKVGAYQTEDFEESL  224 (458)
T ss_pred             EEECCCC--Ch---HHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHH--HHHHHCCCeEEEEecCCcceEE
Confidence            8776421  00   0111357889999999986543 333221    122333332  1244578889999876  4689


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 022555          275 GVDAPEDVEKIESFMRER  292 (295)
Q Consensus       275 dIdtpeDl~~ae~ll~~r  292 (295)
                      ||++++||+.|+.+++.+
T Consensus       225 ~i~~~~Dl~~a~~ll~~~  242 (458)
T PRK14354        225 GVNDRVALAEAEKVMRRR  242 (458)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999887643

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.91  E-value=1.7e-22  Score=176.73  Aligned_cols=216  Identities=18%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----cCCeEEeCCC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTSE  118 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----~~~~v~~~~~  118 (295)
                      .+||||||.|+||+      ||+|+|++|+|||+|+++++.+. ++++|+|+++.  +.+.+++.+    .++.+++..+
T Consensus         2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~   80 (233)
T cd06425           2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE   80 (233)
T ss_pred             cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence            38999999999995      79999999999999999999987 59999999973  455555542    4566655322


Q ss_pred             -CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECC-
Q 022555          119 -SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDN-  195 (295)
Q Consensus       119 -~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~-  195 (295)
                       ...|...++..|...+....+.+++++||..+  ...+.++++.+++.. +..++.+.+..     ++..+++ ..++ 
T Consensus        81 ~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~g~v~~d~~  152 (233)
T cd06425          81 TEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAELLDFHKKHG-AEGTILVTKVE-----DPSKYGVVVHDEN  152 (233)
T ss_pred             CCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHHHHHHHHcC-CCEEEEEEEcC-----CccccCeEEEcCC
Confidence             23344567888888885323568999999843  345788998887542 22233334432     2222333 3566 


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCC
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHG  275 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~id  275 (295)
                      +|++..+.++|..         .....+++|+|+|++++|..+... +...+ .|.+   ..+....+|.+++.+++|.|
T Consensus       153 ~~~v~~~~ekp~~---------~~~~~~~~Giyi~~~~~l~~l~~~-~~~~~-~~~~---~~l~~~~~v~~~~~~g~w~d  218 (233)
T cd06425         153 TGRIERFVEKPKV---------FVGNKINAGIYILNPSVLDRIPLR-PTSIE-KEIF---PKMASEGQLYAYELPGFWMD  218 (233)
T ss_pred             CCEEEEEEECCCC---------CCCCEEEEEEEEECHHHHHhcccC-cccch-hhhH---HHHHhcCCEEEEeeCCEEEc
Confidence            6899988887521         113578999999999998765431 11111 1222   22223357999999899999


Q ss_pred             CCCHHHHHHHHHHH
Q 022555          276 VDAPEDVEKIESFM  289 (295)
Q Consensus       276 IdtpeDl~~ae~ll  289 (295)
                      |+||+||..|+.++
T Consensus       219 igt~~~~~~a~~~~  232 (233)
T cd06425         219 IGQPKDFLKGMSLY  232 (233)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999998765

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.91  E-value=1.4e-22  Score=187.82  Aligned_cols=219  Identities=20%  Similarity=0.257  Sum_probs=154.3

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHHH---cCCeEEe-CCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGADVIM-TSE  118 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~~---~~~~v~~-~~~  118 (295)
                      |||||||.|+||.      ||+|+|++|+|||+|+++++.+. ++++|+|+++.   +.+.+++..   +++++.+ .+.
T Consensus         2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (353)
T TIGR01208         2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQG   80 (353)
T ss_pred             EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECC
Confidence            8999999999995      79999999999999999999988 59999999875   455555542   3444422 222


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCC
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHG  197 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g  197 (295)
                      ...|...+++.++..+.  .+.++++.||+++  ..++.++++.+.+. ++.+++.+.++.     +|..+.+ ..++++
T Consensus        81 ~~~G~~~al~~a~~~l~--~~~~li~~gD~~~--~~~l~~l~~~~~~~-~~d~ti~~~~~~-----~~~~~g~~~~~~~~  150 (353)
T TIGR01208        81 EPLGLAHAVYTARDFLG--DDDFVVYLGDNLI--QDGISRFVKSFEEK-DYDALILLTKVR-----DPTAFGVAVLEDGK  150 (353)
T ss_pred             CCCCHHHHHHHHHHhcC--CCCEEEEECCeec--CccHHHHHHHHHhc-CCCcEEEEEECC-----ChhhCeEEEEcCCC
Confidence            33455567888888884  3568999999976  36789999988653 222333333432     2333333 345566


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAH  274 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i  274 (295)
                      ++..|.+++..         ......++|+|+|++.+++.+....++   ++..++.+  ..++..|.+|.+++.+++|.
T Consensus       151 ~v~~~~ekp~~---------~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l--~~l~~~g~~v~~~~~~g~w~  219 (353)
T TIGR01208       151 RILKLVEKPKE---------PPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAI--QWLIEKGYKVGGSKVTGWWK  219 (353)
T ss_pred             cEEEEEECCCC---------CCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHH--HHHHHcCCeEEEEEeCcEEE
Confidence            78888776421         113578999999999877665443321   23333333  23445788999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 022555          275 GVDAPEDVEKIESFMRER  292 (295)
Q Consensus       275 dIdtpeDl~~ae~ll~~r  292 (295)
                      |||||+||..|+..+..+
T Consensus       220 digt~~dl~~a~~~ll~~  237 (353)
T TIGR01208       220 DTGKPEDLLDANRLILDE  237 (353)
T ss_pred             eCCCHHHHHHHHHHHHhh
Confidence            999999999999988764

Alternate name: dTDP-D-glucose synthase

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=2e-22  Score=193.91  Aligned_cols=230  Identities=17%  Similarity=0.200  Sum_probs=159.9

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |++.+||||||+|+||+   ||+|++++|+|||+|+++++.+. ++++|+|++++  +.+.+++...++.++.. +...|
T Consensus         6 ~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~-~~~~G   83 (481)
T PRK14358          6 RPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQGSGVAFARQ-EQQLG   83 (481)
T ss_pred             CCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhccCCcEEecC-CCcCC
Confidence            56789999999999995   89999999999999999999987 59999999985  55666655456665543 23335


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCCeEEE
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHGYAIY  201 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g~v~~  201 (295)
                      ...+++.++..+....+.+++++||+||+++.+++++++.+.++ ++.+++...++.     ++..+++ ..|++|++..
T Consensus        84 t~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-~~~~ti~~~~~~-----~~~~yG~v~~d~~g~v~~  157 (481)
T PRK14358         84 TGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-GSAMTILTGELP-----DATGYGRIVRGADGAVER  157 (481)
T ss_pred             cHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-CCeEEEEEEEcC-----CCCCceEEEECCCCCEEE
Confidence            55678888887742234589999999999999999999988765 344444434442     2233444 4677889999


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHH---HhhcccC-CCCCCcccchhhhhhhhhCCceEEEEEecC--CcCC
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF---LKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVIKVDH--EAHG  275 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~---l~~~~~~-~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~id  275 (295)
                      |.|++.+ +.    .+.....+++|+|+|++++   +..+... ...+++++|.+.  .++..|.++..++.++  .++.
T Consensus       158 ~~Ek~~~-~~----~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~--~~~~~g~~i~~~~~~~~~~~i~  230 (481)
T PRK14358        158 IVEQKDA-TD----AEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLG--LYRAGGAQVRAFKLSDPDEVLG  230 (481)
T ss_pred             EEECCCC-Ch----hHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHH--HHHHCCCeEEEEecCCHHHhcC
Confidence            9887521 10    0111246899999999654   3333221 112344555432  3456788899988763  6788


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 022555          276 VDAPEDVEKIESFMRER  292 (295)
Q Consensus       276 IdtpeDl~~ae~ll~~r  292 (295)
                      ++++.++..++.++.++
T Consensus       231 ~~~~~~l~~~~~~l~~~  247 (481)
T PRK14358        231 ANDRAGLAQLEATLRRR  247 (481)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            88888887777666554

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=1.8e-22  Score=194.44  Aligned_cols=219  Identities=21%  Similarity=0.244  Sum_probs=153.0

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcC--CeEEeCCCCCC
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFG--ADVIMTSESCR  121 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~--~~v~~~~~~~~  121 (295)
                      .+.+||||||.|+||+   ||+|++++|+|||+|+++++.+. ++++++|+++.  +.+.+.+....  +.++ .++...
T Consensus         4 ~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~~~~~~-~~~~~~   81 (482)
T PRK14352          4 PTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAELAPEVDIA-VQDEQP   81 (482)
T ss_pred             CceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhccCCccEEE-eCCCCC
Confidence            4679999999999995   79999999999999999999987 48888888863  45555544332  3233 223333


Q ss_pred             CcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeE
Q 022555          122 NGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYA  199 (295)
Q Consensus       122 g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v  199 (295)
                      |...+++.++..+.. ..+.+++++||+||+++.+++++++.+.+.. ..+++...++     .+|..+ .+..+++|++
T Consensus        82 Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~-~~~~v~~~~~-----~~p~~yg~~~~~~~g~V  155 (482)
T PRK14352         82 GTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG-NAVTVLTTTL-----DDPTGYGRILRDQDGEV  155 (482)
T ss_pred             CcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC-CeEEEEEeec-----CCCCCCCEEEECCCCCE
Confidence            445678899988742 2467999999999999999999999887643 3344433333     233333 2345778899


Q ss_pred             EEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC----CCCcccchhhhhhhhhCCceEEEEEecCCcC
Q 022555          200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVIKVDHEAH  274 (295)
Q Consensus       200 ~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~i  274 (295)
                      ..|.+++.+ ..    .+.....+++|+|+|++++|..+ ..+.+    .+++.+|.+  ..++..|.+|.+++.+++|.
T Consensus       156 ~~~~EKp~~-~~----~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i--~~l~~~g~~V~~~~~~g~w~  228 (482)
T PRK14352        156 TAIVEQKDA-TP----SQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVL--AIAREAGHRVGAHHADDSAE  228 (482)
T ss_pred             EEEEECCCC-CH----HHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHH--HHHHHCCCeEEEEecCCcce
Confidence            888887532 11    11112468999999999998653 33322    223444443  23456788999999989999


Q ss_pred             CCCCHHHH
Q 022555          275 GVDAPEDV  282 (295)
Q Consensus       275 dIdtpeDl  282 (295)
                      |+++++++
T Consensus       229 ~~g~~~~~  236 (482)
T PRK14352        229 VAGVNDRV  236 (482)
T ss_pred             EEcCCCHH
Confidence            99999887

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.91  E-value=1.5e-22  Score=193.30  Aligned_cols=224  Identities=19%  Similarity=0.290  Sum_probs=157.7

Q ss_pred             EEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        51 ~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      .+||||||.|+||+   ||+|++++|+|||+|+++++.+++ +++++|+++.  +.+.+.+.++++.++..++. .|...
T Consensus         2 ~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~~-~G~~~   79 (451)
T TIGR01173         2 SVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARALG-PQKIHVVYGHGAEQVRKALANRDVNWVLQAEQ-LGTGH   79 (451)
T ss_pred             eEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhcCCCcEEEEcCCC-CchHH
Confidence            39999999999995   799999999999999999999884 8888888863  55666666666766554332 34456


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEeec
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFSR  204 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~~~  204 (295)
                      ++++++..+. +.+.+++++||+||+++++++++++.+.+. +.  ++...++.     +|..+ .+..+++|.+..|.+
T Consensus        80 ai~~a~~~l~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-~~--~~~~~~~~-----~~~~~g~v~~d~~g~v~~~~e  150 (451)
T TIGR01173        80 AVLQALPFLP-DDGDVLVLYGDVPLISAETLERLLEAHRQN-GI--TLLTAKLP-----DPTGYGRIIRENDGKVTAIVE  150 (451)
T ss_pred             HHHHHHHhcC-CCCcEEEEECCcCCcCHHHHHHHHHHHhhC-CE--EEEEEecC-----CCCCCCEEEEcCCCCEEEEEE
Confidence            7889998885 236799999999999999999999988654 32  22223332     22222 234677888888877


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecCC--cCCCC
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDHE--AHGVD  277 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~~--~idId  277 (295)
                      ++.. .    ..++..+..++|+|+|++++|.. +......    ++..++.+  ..++..|.++..++.+++  |+|++
T Consensus       151 k~~~-~----~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~--~~l~~~g~~v~~~~~~~~~~~~~i~  223 (451)
T TIGR01173       151 DKDA-N----AEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVI--ALAVADGETVRAVQVDDSDEVLGVN  223 (451)
T ss_pred             cCCC-C----hHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHH--HHHHHCCCeEEEEEcCChhheecCC
Confidence            6421 1    01222357889999999998654 3332221    22223322  234567889999987654  99999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022555          278 APEDVEKIESFMRER  292 (295)
Q Consensus       278 tpeDl~~ae~ll~~r  292 (295)
                      +|+|+..++.++..+
T Consensus       224 t~~dl~~~~~~l~~~  238 (451)
T TIGR01173       224 DRLQLAQLERILQRR  238 (451)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999998877653

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.91  E-value=6.5e-23  Score=180.52  Aligned_cols=222  Identities=22%  Similarity=0.282  Sum_probs=152.5

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeE-EEECC--chHHHHHHHH---cCCeE--Ee
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHL-VVATD--DEKIAECCQQ---FGADV--IM  115 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~I-vVv~~--~~~i~~~~~~---~~~~v--~~  115 (295)
                      .|||||||.|+||.      ||+|+++.|+ |||+|+++.+.+. +++++ +|++.  .+.+.++++.   +++++  +.
T Consensus         1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~   79 (248)
T PF00483_consen    1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV   79 (248)
T ss_dssp             EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred             CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence            38999999999995      7999999999 9999999999987 59995 44443  3556666653   34333  44


Q ss_pred             CCCCCCCcHHHHHHHHHHcccc--CCEEEEEeCCcccCCHHHHHHHHHHHHhCCC-cEEEEeeeeCCCCCCCCCCceE-E
Q 022555          116 TSESCRNGTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPD-AVFSTAVTSLKPEDAFDPNRVK-C  191 (295)
Q Consensus       116 ~~~~~~g~~~~i~~al~~~~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d-~~v~v~~~~~~~~~~~~p~~~~-v  191 (295)
                      .+. ..|...++..+...+..+  .+.|++++||..+ +. .+..+++.+.+... ..+++...+..     ++..++ +
T Consensus        80 ~~~-~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~g~v  151 (248)
T PF00483_consen   80 QPE-PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIF-DD-DLQDMLEFHRESNADGTVTLLVVPVE-----DPSRYGVV  151 (248)
T ss_dssp             ESS-SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEE-ST-THHHHHHHHHHHSSCESEEEEEEESS-----GGGGSEEE
T ss_pred             ccc-ccchhHHHHHHHHHhhhccccceEEEEeccccc-cc-hhhhHHHhhhcccccccccccccccc-----ccccceee
Confidence            432 225456788888887532  2359999999944 43 89999999976432 33344333332     233343 4


Q ss_pred             EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc----cCCCCCCcccchhhhhhhhhCCceEEEE
Q 022555          192 VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP----GLHPTPLQLEEDLEQLKVLENGYKMKVI  267 (295)
Q Consensus       192 ~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~----~~~~~~~~~~d~~~~~~~~~~G~~v~~v  267 (295)
                      ..|++|+|..|.|||..        .....++++|+|+|++++|..+.    .....+...+|.+  ..++..|..+..+
T Consensus       152 ~~d~~~~V~~~~EKP~~--------~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i--~~~~~~~~~~~~~  221 (248)
T PF00483_consen  152 EVDEDGRVIRIVEKPDN--------PNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAI--PKLLEQGKKVYAF  221 (248)
T ss_dssp             EEETTSEEEEEEESCSS--------HSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHH--HHHHHTTCEEEEE
T ss_pred             eeccceeEEEEeccCcc--------cccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHH--HHHHHcCCceEEE
Confidence            56778999999998531        11146899999999999988662    2222223334433  2345678888888


Q ss_pred             EecC--CcCCCCCHHHHHHHHHHHHH
Q 022555          268 KVDH--EAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       268 ~~~~--~~idIdtpeDl~~ae~ll~~  291 (295)
                      ..+.  +|+||++|+||..|+..+.+
T Consensus       222 ~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  222 IFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             EecCCeEEEECCCHHHHHHHHHHHhc
Confidence            8776  79999999999999988754

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=99.91  E-value=2.8e-23  Score=179.58  Aligned_cols=182  Identities=35%  Similarity=0.606  Sum_probs=133.7

Q ss_pred             EEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555           51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA  130 (295)
Q Consensus        51 ~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a  130 (295)
                      .|||+|+|+|+|+|+|++++++|+|||+|+++++++++.+++|+|.|+++++.++++++++.++.++++...++++...+
T Consensus         1 iaiIpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~   80 (217)
T PF02348_consen    1 IAIIPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEA   80 (217)
T ss_dssp             EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHH
T ss_pred             CEEEecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999988887888888888778


Q ss_pred             HHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555          131 LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (295)
Q Consensus       131 l~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~~i  207 (295)
                      +..... +.+.++.+.+|.||+++..++++++.+.+.. +..... ...+. ..+..+++.++...+.++...++.+..+
T Consensus        81 ~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (217)
T PF02348_consen   81 IKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNL-VDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVI  159 (217)
T ss_dssp             HHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEE-EEEECSHHHHTSTTSTEEEECTTSBEEEEESSES
T ss_pred             HHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccc-cccccchhhcccccceEEEeccccchhhcccCCC
Confidence            777642 2348999999999999999999999998753 322222 22221 1223455667767777777777877766


Q ss_pred             CCCCCCCCCCCCCceEEEeEEEecHH
Q 022555          208 PYNKSGKVNPQFPYLLHLGIQSYDSN  233 (295)
Q Consensus       208 ~~~r~~~~~~~~p~~~~~Giyif~~~  233 (295)
                      ++.++........+..+.|+|.|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (217)
T PF02348_consen  160 PYIRRNPEEFKYFYIRQVGIYAFRKE  185 (217)
T ss_dssp             SECHHHHCSSSSTEEEEEEEEEEEHH
T ss_pred             cccccccccccccccccccccccccc
Confidence            65443211100124556777777775

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.90  E-value=2.6e-22  Score=178.32  Aligned_cols=217  Identities=15%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-------------
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-------------  109 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~-------------  109 (295)
                      .+||||||.|+||.      ||+++|++|+|||+|+++++.++ ++++|+|+++.  +.+.++....             
T Consensus         2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (260)
T TIGR01099         2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE   80 (260)
T ss_pred             eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence            38999999999994      79999999999999999999987 59999999974  4444443210             


Q ss_pred             -----------CCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEeee
Q 022555          110 -----------GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVT  176 (295)
Q Consensus       110 -----------~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~-~~i~~li~~~~~~~d~~v~v~~~  176 (295)
                                 +..+.+ ......|...++..++..+.  .+.++++.+|+++... .+++.+++.+.+....++++  .
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~--~  156 (260)
T TIGR01099        81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAV--E  156 (260)
T ss_pred             HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEE--E
Confidence                       122322 22223344567888888873  4679999999998765 48999999887643333333  2


Q ss_pred             eCCCCCCCCCCceEE-EEC----CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcc
Q 022555          177 SLKPEDAFDPNRVKC-VVD----NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQL  248 (295)
Q Consensus       177 ~~~~~~~~~p~~~~v-~~d----~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~  248 (295)
                      .+..+   ++..+++ ..|    ++|+|..|.|+|.+  .     +.....+++|+|+|++++|..+.....+   +++.
T Consensus       157 ~~~~~---~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~--~-----~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l  226 (260)
T TIGR01099       157 EVPKE---EVSKYGVIDGEGVEEGLYEIKDMVEKPKP--E-----EAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQL  226 (260)
T ss_pred             ECChh---hcccCceEEeccccCCceeEEEEEECCCC--C-----CCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeH
Confidence            22211   2233433 344    23689899888532  1     1123578999999999988876443221   2333


Q ss_pred             cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555          249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI  285 (295)
Q Consensus       249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a  285 (295)
                      +|.+.  .++.. .+|.+++.+++|.||++|+||..|
T Consensus       227 ~d~i~--~l~~~-~~v~~~~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       227 TDALR--KLLEK-ETVYAYKFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             HHHHH--HHHhc-CCEEEEEcceEEEeCCCHHHHhhC
Confidence            43331  22334 479999988999999999999754

Built to distinquish between the highly similar genes galU and galF

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.90  E-value=3.2e-22  Score=173.47  Aligned_cols=206  Identities=19%  Similarity=0.231  Sum_probs=143.8

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH--cCCeEEeCCC--C
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--FGADVIMTSE--S  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~--~~~~v~~~~~--~  119 (295)
                      |||||||.|+||.      ||+++|++|+|||+|+++++.++ ++++|+|+++.  +.+.+++..  +++.+.+..+  .
T Consensus         2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~   80 (221)
T cd06422           2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE   80 (221)
T ss_pred             EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCc
Confidence            8999999999995      69999999999999999999988 59999999974  556665543  4666644332  2


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCce-EEEECCCC
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHG  197 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g  197 (295)
                      ..|...++..++..+.  .+.+++++||+++  ...+..+++.+.+ ..++.+++...+..     ++..+ .+..+++|
T Consensus        81 ~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~v~~d~~~  151 (221)
T cd06422          81 LLETGGGIKKALPLLG--DEPFLVVNGDILW--DGDLAPLLLLHAWRMDALLLLLPLVRNP-----GHNGVGDFSLDADG  151 (221)
T ss_pred             ccccHHHHHHHHHhcC--CCCEEEEeCCeee--CCCHHHHHHHHHhccCCCceEEEEEEcC-----CCCCcceEEECCCC
Confidence            3345567888998884  3679999999965  3467788888763 23444444333321     11222 34467788


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId  277 (295)
                      .+..+.+++.            ...+++|+|+|++++|..+.+.   ....++.+.  .++..| ++..++.+++|.||+
T Consensus       152 ~v~~~~~~~~------------~~~~~~Giyi~~~~~l~~l~~~---~~~~~d~~~--~l~~~~-~~~~~~~~g~w~di~  213 (221)
T cd06422         152 RLRRGGGGAV------------APFTFTGIQILSPELFAGIPPG---KFSLNPLWD--RAIAAG-RLFGLVYDGLWFDVG  213 (221)
T ss_pred             cEeecccCCC------------CceEEEEEEEEcHHHHhhCCcC---cccHHHHHH--HHHHcC-CeEEEecCCEEEcCC
Confidence            8876655431            2578999999999998865431   223333331  233444 577777778999999


Q ss_pred             CHHHHHHH
Q 022555          278 APEDVEKI  285 (295)
Q Consensus       278 tpeDl~~a  285 (295)
                      +|+||..|
T Consensus       214 t~~~~~~a  221 (221)
T cd06422         214 TPERLLAA  221 (221)
T ss_pred             CHHHHhhC
Confidence            99999864

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.90  E-value=1.3e-21  Score=174.62  Aligned_cols=222  Identities=16%  Similarity=0.168  Sum_probs=149.4

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----------c---
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----------F---  109 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----------~---  109 (295)
                      .+||||||.|+||.      ||+++|++|+|||+|+++++.+. ++++|+|+++.  +.+.++...          .   
T Consensus         2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   80 (267)
T cd02541           2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT   80 (267)
T ss_pred             eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence            48999999999995      79999999999999999999987 59999999984  344443321          1   


Q ss_pred             -----------CCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHH-HHHHHHHHHHhCCCcEEEEeee
Q 022555          110 -----------GADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFSTAVT  176 (295)
Q Consensus       110 -----------~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~-~i~~li~~~~~~~d~~v~v~~~  176 (295)
                                 +..+.+ .++...|...++..++..+.  .+.++++.+|+++...+ +++++++.+.+....++.+  .
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~--~  156 (267)
T cd02541          81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAV--E  156 (267)
T ss_pred             HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEE--E
Confidence                       333322 22223445567888888884  36799999999886654 7999999887543333333  2


Q ss_pred             eCCCCCCCCCCceEE-EECC----CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcc
Q 022555          177 SLKPEDAFDPNRVKC-VVDN----HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQL  248 (295)
Q Consensus       177 ~~~~~~~~~p~~~~v-~~d~----~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~  248 (295)
                      ++..+   ++..+.+ ..|+    ++++..+.|+|.+       .......+++|+|+|++++|..+.....   .+...
T Consensus       157 ~~~~~---~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~-------~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~  226 (267)
T cd02541         157 EVPPE---DVSKYGIVKGEKIDGDVFKVKGLVEKPKP-------EEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQL  226 (267)
T ss_pred             EcChh---cCccceEEEeecCCCCceEEeEEEECCCC-------CCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEH
Confidence            32211   1222333 3454    2478888887531       0112357889999999999876543211   12222


Q ss_pred             cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555          249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~  290 (295)
                      ++.+  ..++..| +|.+++.+++|.||+||+||..|+.-+.
T Consensus       227 ~d~i--~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         227 TDAI--AKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             HHHH--HHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence            3322  2334455 8999998889999999999999987653

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=99.89  E-value=5.6e-22  Score=165.41  Aligned_cols=190  Identities=23%  Similarity=0.334  Sum_probs=138.7

Q ss_pred             CCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCeEEeCCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~v~~~~~~~~g  122 (295)
                      ++++.+||||||+|+||+ +|+|++++|+|++.|+++++.+. .+++++||++++..+   ......++.++.+++..+|
T Consensus         3 ~~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~G   81 (199)
T COG2068           3 PSTVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQG   81 (199)
T ss_pred             CcceEEEEEcccccccCCCcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhh
Confidence            456899999999999997 89999999999999999999887 599999999975222   2233457888899888888


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      ..+|+..|+.....+.+.++++.+|||++++++++++++.+.++ . .+.   .+.          +   .+..|+    
T Consensus        82 ls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~-~~v---~p~----------~---~g~rG~----  139 (199)
T COG2068          82 LSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR-G-AAV---RPV----------Y---GGARGH----  139 (199)
T ss_pred             HhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc-C-cee---eee----------c---cCCcCC----
Confidence            88999999999864446999999999999999999999999875 2 211   111          1   111233    


Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEe-cCCcCCCCCHH
Q 022555          203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKV-DHEAHGVDAPE  280 (295)
Q Consensus       203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~-~~~~idIdtpe  280 (295)
                                       |       -+|++..|.....+.-.       .....++. .|.....++. ...-+|||||+
T Consensus       140 -----------------P-------v~~~~~~~~~l~~l~GD-------~G~r~ll~~~~~~~~~V~~~~g~llDVDTpe  188 (199)
T COG2068         140 -----------------P-------VLLSKDLFPALARLSGD-------VGARQLLEEGGLPLVEVEVDAGVLLDVDTPE  188 (199)
T ss_pred             -----------------c-------eeechhHHHHHhhcCCc-------hhHHHHHHhcCcceEeeccCCceEecCCCHH
Confidence                             2       34455555444333211       01122333 4556666665 46789999999


Q ss_pred             HHHHHHHHHH
Q 022555          281 DVEKIESFMR  290 (295)
Q Consensus       281 Dl~~ae~ll~  290 (295)
                      ||.+++.++.
T Consensus       189 d~~~a~~~~~  198 (199)
T COG2068         189 DLARAQDLLR  198 (199)
T ss_pred             HHHHHHHhhc
Confidence            9999998874

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.89  E-value=1.3e-21  Score=183.15  Aligned_cols=226  Identities=16%  Similarity=0.151  Sum_probs=151.6

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cC-----
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-----  110 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~-----  110 (295)
                      .++.|||||||.||||.      ||+|+|++|+ |||+|+++++.++ ++++|+|+++.  +.+.+++..   ++     
T Consensus         2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~   80 (380)
T PRK05293          2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN   80 (380)
T ss_pred             CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence            34679999999999995      7999999999 8999999999987 59999999984  556666532   11     


Q ss_pred             --CeEE--eCCCC----CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555          111 --ADVI--MTSES----CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE  181 (295)
Q Consensus       111 --~~v~--~~~~~----~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~  181 (295)
                        +.++  +..+.    ..|...+++.|+..+.. +.+.++++++|. + ...++.++++.+.+.. +.+++.+.++.. 
T Consensus        81 ~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~-l-~~~d~~~ll~~h~~~~-~~~tl~~~~~~~-  156 (380)
T PRK05293         81 GGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH-I-YKMDYDKMLDYHKEKE-ADVTIAVIEVPW-  156 (380)
T ss_pred             CCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE-E-EcCCHHHHHHHHHhcC-CCEEEEEEEcch-
Confidence              2222  11111    13444678888888742 136899999998 3 3567889998886532 223332223221 


Q ss_pred             CCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCCCCcc----cchhhhh
Q 022555          182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPTPLQL----EEDLEQL  255 (295)
Q Consensus       182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~~~~~----~d~~~~~  255 (295)
                        .+|..+++ ..|++|++..|.++|..         ......++|+|+|++++|..+. .......+.    +|.+  .
T Consensus       157 --~~~~~yG~v~~d~~g~V~~~~eKp~~---------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i--~  223 (380)
T PRK05293        157 --EEASRFGIMNTDENMRIVEFEEKPKN---------PKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVI--P  223 (380)
T ss_pred             --hhccccCEEEECCCCcEEEEEeCCCC---------CCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHH--H
Confidence              12334433 35778899888887521         1135789999999999886532 211111111    1222  1


Q ss_pred             hhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555          256 KVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       256 ~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      .++..|.++..++.+++|.||++|+||..|+..+..
T Consensus       224 ~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~  259 (380)
T PRK05293        224 LYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLR  259 (380)
T ss_pred             HHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcC
Confidence            234567889999988899999999999999965543

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.89  E-value=2e-21  Score=172.54  Aligned_cols=220  Identities=15%  Similarity=0.161  Sum_probs=147.9

Q ss_pred             EEEEcCC--CCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH----cCCeEEeCC
Q 022555           52 GIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTS  117 (295)
Q Consensus        52 aiIlAaG--~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~----~~~~v~~~~  117 (295)
                      +||||||  +|+||.      ||+|+|++|+|||+|+++.+.+..++++|+|+++.  +.+.+++..    .++.+.+..
T Consensus         1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~   80 (257)
T cd06428           1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ   80 (257)
T ss_pred             CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence            5899999  899995      79999999999999999999984359999999973  455555532    344553322


Q ss_pred             CC-CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EEC
Q 022555          118 ES-CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVD  194 (295)
Q Consensus       118 ~~-~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d  194 (295)
                      +. ..|...++..+...+.. ..+.|++++||.++  ..+++.+++.++++. +.+++...++..+   ++..+.+ ..|
T Consensus        81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~~-~~~tl~~~~~~~~---~~~~yg~v~~d  154 (257)
T cd06428          81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQELLEFHKKHG-ASGTILGTEASRE---QASNYGCIVED  154 (257)
T ss_pred             CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHHHHHHHHHcC-CCEEEEEEEcccc---ccccccEEEEe
Confidence            22 33444567777777642 24679999999964  347999999887642 3333333333211   2233333 356


Q ss_pred             -CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---C---------------Ccc-cchhhh
Q 022555          195 -NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---P---------------LQL-EEDLEQ  254 (295)
Q Consensus       195 -~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~---------------~~~-~d~~~~  254 (295)
                       ++|++..|.++|.         +.....+++|+|+|++++|..+....++   +               +.+ +|.+  
T Consensus       155 ~~~g~v~~~~Ekp~---------~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~--  223 (257)
T cd06428         155 PSTGEVLHYVEKPE---------TFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVL--  223 (257)
T ss_pred             CCCCeEEEEEeCCC---------CcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhh--
Confidence             5789998888752         1124579999999999998765443221   0               111 1222  


Q ss_pred             hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555          255 LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       255 ~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll  289 (295)
                      ..++..+ +|.+++.+++|.||++|+||..|++.+
T Consensus       224 ~~l~~~~-~v~~~~~~g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         224 TPLAGSG-KLYVYKTDDFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             hHHhccC-CEEEecCCCeeecCCCHHHHHhHhhcC
Confidence            1223344 799999889999999999999998753

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.89  E-value=2.4e-21  Score=185.08  Aligned_cols=224  Identities=16%  Similarity=0.253  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHc-CCeEEeCCCCCCCc
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCRNG  123 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~-~~~v~~~~~~~~g~  123 (295)
                      +.+||||||+|+||+   ||+|++++|+|||+|+++++.+.+ +++++|++..  +.+.+++.+. ++.++.. ....|.
T Consensus         2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~g-~~~iivvv~~~~~~i~~~~~~~~~i~~v~~-~~~~G~   79 (450)
T PRK14360          2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEELK-PDRRLVIVGHQAEEVEQSLAHLPGLEFVEQ-QPQLGT   79 (450)
T ss_pred             ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhCC-CCeEEEEECCCHHHHHHHhcccCCeEEEEe-CCcCCc
Confidence            568999999999996   899999999999999999999874 7888887763  4555555443 3555543 233344


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEe
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYF  202 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~  202 (295)
                      ..++..++..+....+.++++++|+||+++++++++++.+.+.. ..+++...++.     +|..+ .+..|++|++..+
T Consensus        80 ~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~-~~~~~~~~~~~-----~~~~~g~~~~d~~g~v~~~  153 (450)
T PRK14360         80 GHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN-ADVTLLTARLP-----NPKGYGRVFCDGNNLVEQI  153 (450)
T ss_pred             HHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEEecC-----CCCCccEEEECCCCCEEEE
Confidence            56788888877532457899999999999999999999887643 33343333332     23333 3346788999988


Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCC----CCcccchhhhhhhhhCCceEEEEEec--CCcCC
Q 022555          203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPT----PLQLEEDLEQLKVLENGYKMKVIKVD--HEAHG  275 (295)
Q Consensus       203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~--~~~id  275 (295)
                      .+++-+++     .+......++|+|+|+++.|..+. ...+.    +...+|.+   ..+.   ++..++..  ..+++
T Consensus       154 ~ek~~~~~-----~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i---~~~~---~~~~~~v~~~~~~~~  222 (450)
T PRK14360        154 VEDRDCTP-----AQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTV---SLLD---PVMAVEVEDYQEING  222 (450)
T ss_pred             EECCCCCh-----hHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHH---HHHh---hceEEecCCHHHhhc
Confidence            88753211     111235789999999998876543 33222    23333332   2221   12333333  46799


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 022555          276 VDAPEDVEKIESFMRER  292 (295)
Q Consensus       276 IdtpeDl~~ae~ll~~r  292 (295)
                      |++|+|++.+++++..+
T Consensus       223 i~~~~dl~~~~~~l~~~  239 (450)
T PRK14360        223 INDRKQLAQCEEILQNR  239 (450)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998653

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.89  E-value=3.9e-21  Score=170.43  Aligned_cols=212  Identities=15%  Similarity=0.161  Sum_probs=145.0

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-----CCeEEeC--
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADVIMT--  116 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-----~~~v~~~--  116 (295)
                      +||||||.|+||.      ||+|+|++|+|||.|+++.+.+. ++++|+|+++  .+.+.+++.+.     ++.+...  
T Consensus         2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR02623         2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN   80 (254)
T ss_pred             EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence            7999999999994      79999999999999999999987 5999999997  35555555431     2222111  


Q ss_pred             -----------------CCCCCCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555          117 -----------------SESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL  178 (295)
Q Consensus       117 -----------------~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~  178 (295)
                                       .+....+ ..+++.+...+.  .+.|+++++|..  ...++.++++.+.+. ++.+++...+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~i--~~~dl~~~~~~h~~~-~~d~tl~~~~-  154 (254)
T TIGR02623        81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDGV--ADIDIKALIAFHRKH-GKKATVTAVQ-  154 (254)
T ss_pred             ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCeE--ecCCHHHHHHHHHHc-CCCEEEEEec-
Confidence                             1112233 346788888874  467999999983  356899999988654 2333332221 


Q ss_pred             CCCCCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhh
Q 022555          179 KPEDAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKV  257 (295)
Q Consensus       179 ~~~~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~  257 (295)
                            ++..+++ ..| ++++..|.+++.+        .  ...+++|+|+|++++|....... .. ..+|.+  ..+
T Consensus       155 ------~~~~yG~v~~d-~~~V~~~~Ekp~~--------~--~~~i~~Giyi~~~~il~~l~~~~-~~-~~~d~i--~~l  213 (254)
T TIGR02623       155 ------PPGRFGALDLE-GEQVTSFQEKPLG--------D--GGWINGGFFVLNPSVLDLIDGDA-TV-WEQEPL--ETL  213 (254)
T ss_pred             ------CCCcccEEEEC-CCeEEEEEeCCCC--------C--CCeEEEEEEEEcHHHHhhccccC-ch-hhhhHH--HHH
Confidence                  1233433 345 4688888887521        0  25789999999999986443211 11 112332  123


Q ss_pred             hhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      +..| ++..++.+++|.||+||+||+.|+..+++.
T Consensus       214 ~~~~-~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~  247 (254)
T TIGR02623       214 AQRG-ELSAYEHSGFWQPMDTLRDKNYLEELWESG  247 (254)
T ss_pred             HhCC-CEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence            4455 689999889999999999999999998764

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.89  E-value=2.3e-21  Score=167.70  Aligned_cols=207  Identities=17%  Similarity=0.237  Sum_probs=138.8

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEeCCC-C
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSE-S  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~~~~-~  119 (295)
                      +||||||.|+||+      ||+|++++|+|||+|+++.+.+. ++++|+|+++.  +.+.++..+   .+.++.+..+ .
T Consensus         1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~   79 (220)
T cd06426           1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK   79 (220)
T ss_pred             CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence            5899999999994      79999999999999999999987 59999999984  445555432   3444433222 2


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE-EECCCCe
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHGY  198 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~d~~g~  198 (295)
                      ..|...++..+....   .+.+++++||.  +....++.+++.+.++. ..+++.+.+...    .+ .+.+ ..| +|+
T Consensus        80 ~~g~~~~l~~~~~~~---~~~~lv~~~D~--i~~~~~~~l~~~~~~~~-~~~~~~~~~~~~----~~-~~g~~~~d-~~~  147 (220)
T cd06426          80 PLGTAGALSLLPEKP---TDPFLVMNGDI--LTNLNYEHLLDFHKENN-ADATVCVREYEV----QV-PYGVVETE-GGR  147 (220)
T ss_pred             CCcchHHHHHHHhhC---CCCEEEEcCCE--eeccCHHHHHHHHHhcC-CCEEEEEEEcCC----CC-cceEEEEC-CCE
Confidence            223233444333332   46799999996  44568899999887642 233333333211    11 2333 345 488


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCC
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA  278 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdt  278 (295)
                      +..+.+++.           ....+++|+|+|+++++.....-  .+.+.++.+  ..++..|.++.+++.++.|.||+|
T Consensus       148 v~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~i~~~--~~~~l~~~~--~~~i~~~~~i~~~~~~~~w~~igt  212 (220)
T cd06426         148 ITSIEEKPT-----------HSFLVNAGIYVLEPEVLDLIPKN--EFFDMPDLI--EKLIKEGKKVGVFPIHEYWLDIGR  212 (220)
T ss_pred             EEEEEECCC-----------CCCeEEEEEEEEcHHHHhhcCCC--CCcCHHHHH--HHHHHCCCcEEEEEeCCeEEeCCC
Confidence            888877641           12467899999999998765321  122233332  234567888999999889999999


Q ss_pred             HHHHHHHH
Q 022555          279 PEDVEKIE  286 (295)
Q Consensus       279 peDl~~ae  286 (295)
                      |+||..|+
T Consensus       213 ~~dl~~a~  220 (220)
T cd06426         213 PEDYEKAN  220 (220)
T ss_pred             HHHHHhhC
Confidence            99999874

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.88  E-value=1.9e-21  Score=184.60  Aligned_cols=235  Identities=18%  Similarity=0.202  Sum_probs=155.8

Q ss_pred             CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c-------
Q 022555           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F-------  109 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~-------  109 (295)
                      |.++.|||||||.|+||.      ||+|+|++|+ |||+|+++++.++ ++++|+|+++.  +.+.+++.+ +       
T Consensus         1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~   79 (429)
T PRK02862          1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGFSG   79 (429)
T ss_pred             CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence            446889999999999994      7999999999 9999999999998 59999999983  566666642 1       


Q ss_pred             CCeEEeCC-CC------CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555          110 GADVIMTS-ES------CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE  181 (295)
Q Consensus       110 ~~~v~~~~-~~------~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~  181 (295)
                      +...+... +.      ..|...+++.++..+.. +.+.|++++||+ ++ ..+++.+++.+.+. ++.+++...++.. 
T Consensus        80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~-~a~~tl~~~~~~~-  155 (429)
T PRK02862         80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRET-GADITLAVLPVDE-  155 (429)
T ss_pred             CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHc-CCCEEEEEEecCh-
Confidence            11112111 11      13445678888887742 246899999999 44 46899999988754 3333333333321 


Q ss_pred             CCCCCCceEE-EECCCCeEEEeecCCCCCCC-------C-----CCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcc
Q 022555          182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNK-------S-----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQL  248 (295)
Q Consensus       182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r-------~-----~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~  248 (295)
                        .++..+++ ..|++|++..|.+++.+...       +     ....+....++++|+|+|++++|..+....+....+
T Consensus       156 --~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~  233 (429)
T PRK02862        156 --KDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDF  233 (429)
T ss_pred             --hhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhh
Confidence              12334444 36778999999888632000       0     000111235789999999999997543211111122


Q ss_pred             cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555          249 EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       249 ~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~  290 (295)
                      .+.+  ...+..+.++.+++.+++|.||+||++|..|+..+.
T Consensus       234 ~~di--l~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~  273 (429)
T PRK02862        234 GKEI--IPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALT  273 (429)
T ss_pred             HHHH--HHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence            2121  123346778999998899999999999999997775

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.88  E-value=7.4e-21  Score=172.43  Aligned_cols=220  Identities=13%  Similarity=0.153  Sum_probs=146.8

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---c----------
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---F----------  109 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~----------  109 (295)
                      .+||||||.|+||.      ||+++|++|+|+|+|+++++.++ ++++|+|+++.  +.+.+++..   +          
T Consensus        10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~   88 (302)
T PRK13389         10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR   88 (302)
T ss_pred             EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence            39999999999994      79999999999999999999988 59999999973  445554431   0          


Q ss_pred             ------------CCeEEeCCCCCCCc-HHHHHHHHHHccccCCEEEEEeCCccc------CCHHHHHHHHHHHHhCCCcE
Q 022555          110 ------------GADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       110 ------------~~~v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pl------i~~~~i~~li~~~~~~~d~~  170 (295)
                                  +..+.+..+....| ..++..+...+.  .+.++++.+|.++      +...++.++++.+.+....+
T Consensus        89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~t  166 (302)
T PRK13389         89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQ  166 (302)
T ss_pred             HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCE
Confidence                        11221111122233 356777777763  3679999999975      24578999999886543332


Q ss_pred             EEEeeeeCCCCCCCCCCceEEE-EC-------CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCC
Q 022555          171 FSTAVTSLKPEDAFDPNRVKCV-VD-------NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH  242 (295)
Q Consensus       171 v~v~~~~~~~~~~~~p~~~~v~-~d-------~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~  242 (295)
                      +  .+.++.     ++..++++ .+       +++++..|.|+|.+       .+.....+++|+|+|++++|..+....
T Consensus       167 l--~~~~~~-----~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~-------~~~~s~~~~~GiYi~~~~il~~l~~~~  232 (302)
T PRK13389        167 I--MVEPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEKPKA-------DVAPSNLAIVGRYVLSADIWPLLAKTP  232 (302)
T ss_pred             E--EEEEcc-----cCCcceEEEecCcccccCCcceEEEEEECCCC-------CCCCccEEEEEEEEECHHHHHHHHhCC
Confidence            2  223331     23445444 33       23578888888631       011125789999999999986554332


Q ss_pred             CC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555          243 PT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       243 ~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~  290 (295)
                      ++   +++.+|.+.  .++. +.+|..+..+++|+||++|+||..|...+.
T Consensus       233 ~~~~~e~~l~d~i~--~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~  280 (302)
T PRK13389        233 PGAGDEIQLTDAID--MLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG  280 (302)
T ss_pred             CCCCCeeeHHHHHH--HHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence            22   233444432  2333 357999988899999999999999976653

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.88  E-value=2.1e-21  Score=185.95  Aligned_cols=222  Identities=14%  Similarity=0.148  Sum_probs=154.1

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR  121 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~  121 (295)
                      ||++.+||||||.|+||.   ||+|++++|+|||+|+++.+.+. ++++++|+++.  +.+++.+...++.++..+ ...
T Consensus         3 ~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~-~~~   80 (456)
T PRK09451          3 NSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADEPLNWVLQA-EQL   80 (456)
T ss_pred             CCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccCCcEEEECC-CCC
Confidence            567889999999999995   79999999999999999999887 58999999874  455555544455665543 333


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      |...+++.++..+. +.+.+++++||+|++++.+++++++.+.+. +.  ++...++     .+|..+.++.+++|++..
T Consensus        81 Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-~~--~i~~~~~-----~~~~~yG~v~~~~g~V~~  151 (456)
T PRK09451         81 GTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG-GI--GLLTVKL-----DNPTGYGRITRENGKVVG  151 (456)
T ss_pred             CcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhcC-CE--EEEEEEc-----CCCCCceEEEecCCeEEE
Confidence            55567888888774 346899999999999999999999876543 32  2222333     233345555666889999


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC----CCCcccchhhhhhhhhCCceEEEEEe------c
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVIKV------D  270 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~------~  270 (295)
                      |.||+.. ..    .+.....+++|+|+|+++.|..+ ..+.+    .+++.+|.+  ..++..|.++..+..      .
T Consensus       152 ~~EKp~~-~~----~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i--~~~i~~g~~v~~~~~~~~~~~~  224 (456)
T PRK09451        152 IVEQKDA-TD----EQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDII--ALAHQEGREIVAVHPQRLSEVE  224 (456)
T ss_pred             EEECCCC-Ch----HHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHH--HHHHHCCCeEEEEecCCHHHhc
Confidence            9988521 00    01112468999999999888643 22222    223344443  234567889988852      2


Q ss_pred             C--CcCCCCCHHHHHHHH
Q 022555          271 H--EAHGVDAPEDVEKIE  286 (295)
Q Consensus       271 ~--~~idIdtpeDl~~ae  286 (295)
                      +  .|.|++++++|..++
T Consensus       225 G~~~~~di~~~~~y~~~~  242 (456)
T PRK09451        225 GVNNRLQLARLERVYQAE  242 (456)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            2  367888888888764

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.87  E-value=1.6e-20  Score=177.23  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=151.1

Q ss_pred             CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-cC-----C
Q 022555           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-FG-----A  111 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~-~~-----~  111 (295)
                      |.++.|||||||.|+||.      ||+|+|++|+ |||+|+++++.++ ++++|+|+++  .+.+.+++.. ++     .
T Consensus         3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~   81 (407)
T PRK00844          3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGLLG   81 (407)
T ss_pred             CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCccccCC
Confidence            455789999999999995      7999999998 9999999999997 5999999997  4566666542 11     1


Q ss_pred             eEEe-CCC-C------CCCcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCC
Q 022555          112 DVIM-TSE-S------CRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED  182 (295)
Q Consensus       112 ~v~~-~~~-~------~~g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~  182 (295)
                      .++. .+. .      ..|...+++.++..+..+ .+.|+++.||. + ...++.++++.+.++. +.+++....+..+ 
T Consensus        82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~-v-~~~dl~~l~~~h~~~~-~~~ti~~~~~~~~-  157 (407)
T PRK00844         82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH-V-YRMDPRQMVDFHIESG-AGVTVAAIRVPRE-  157 (407)
T ss_pred             CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE-E-EcCCHHHHHHHHHhcC-CcEEEEEEecchH-
Confidence            1221 111 1      123345788888887532 36799999998 3 3568999999887542 2223332332211 


Q ss_pred             CCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC---CCCcc-cchhhhhh
Q 022555          183 AFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP---TPLQL-EEDLEQLK  256 (295)
Q Consensus       183 ~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~---~~~~~-~d~~~~~~  256 (295)
                        ++..+++ ..|++|++..|.++|.. +.+ .........+++|+|+|++++|.. +.+...   ....+ +|.+  ..
T Consensus       158 --~~~~~Gvv~~d~~g~v~~~~eKp~~-~~~-~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii--~~  231 (407)
T PRK00844        158 --EASAFGVIEVDPDGRIRGFLEKPAD-PPG-LPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDII--PR  231 (407)
T ss_pred             --HcccCCEEEECCCCCEEEEEECCCC-ccc-ccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHH--HH
Confidence              2233433 46778999999888532 110 011112368899999999999754 332211   11112 2222  12


Q ss_pred             hhhCCceEEEEEe------------cCCcCCCCCHHHHHHHHHHHHH
Q 022555          257 VLENGYKMKVIKV------------DHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       257 ~~~~G~~v~~v~~------------~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      ++..| ++..++.            +++|.||++|+||..|+..+..
T Consensus       232 l~~~~-~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~  277 (407)
T PRK00844        232 LVERG-RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLS  277 (407)
T ss_pred             HhccC-eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhC
Confidence            33344 6888754            4789999999999999977764

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.87  E-value=2.5e-20  Score=165.10  Aligned_cols=214  Identities=15%  Similarity=0.164  Sum_probs=145.8

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc---C--CeEE----
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G--ADVI----  114 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~---~--~~v~----  114 (295)
                      |||||||.|+||.      ||+|+|++|+|||+|+++.+.+. ++++|+|+++  .+.++++..+.   +  +.+.    
T Consensus         1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   79 (253)
T cd02524           1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN   79 (253)
T ss_pred             CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence            6899999999994      79999999999999999999988 5999999997  46677666542   1  2221    


Q ss_pred             ----eCCCC------------CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555          115 ----MTSES------------CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL  178 (295)
Q Consensus       115 ----~~~~~------------~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~  178 (295)
                          .++..            ..+...+++.|+..+.. .+.|++++||.. + ...+..+++.+... ++.+++.... 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~-~~dl~~ll~~h~~~-~~~~tl~~~~-  154 (253)
T cd02524          80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-S-DVNINALIEFHRSH-GKLATVTAVH-  154 (253)
T ss_pred             ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-E-CCCHHHHHHHHHHc-CCCEEEEEec-
Confidence                11100            11233468888888742 268999999984 3 35678999877654 2323332221 


Q ss_pred             CCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhh
Q 022555          179 KPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKV  257 (295)
Q Consensus       179 ~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~  257 (295)
                            ++..+. +..|++|++..+.+++.+          ....+++|+|+|+++++..+... ...+ .++.+  ..+
T Consensus       155 ------~~~~~g~v~~d~~g~V~~~~ekp~~----------~~~~i~~Giyi~~~~l~~~l~~~-~~~~-~~d~l--~~l  214 (253)
T cd02524         155 ------PPGRFGELDLDDDGQVTSFTEKPQG----------DGGWINGGFFVLEPEVFDYIDGD-DTVF-EREPL--ERL  214 (253)
T ss_pred             ------CCCcccEEEECCCCCEEEEEECCCC----------CCceEEEEEEEECHHHHHhhccc-cchh-hHHHH--HHH
Confidence                  112232 346778999988887531          01468899999999988655432 1111 12222  233


Q ss_pred             hhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      +..| ++.+++.+++|.|||+++||+.|++++...
T Consensus       215 i~~~-~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~  248 (253)
T cd02524         215 AKDG-ELMAYKHTGFWQCMDTLRDKQTLEELWNSG  248 (253)
T ss_pred             HhcC-CEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence            4455 688888888999999999999999998654

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.87  E-value=8.6e-21  Score=165.53  Aligned_cols=209  Identities=19%  Similarity=0.189  Sum_probs=136.9

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH-----HHHHHH--cCCeEEeCCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQ--FGADVIMTSE  118 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i-----~~~~~~--~~~~v~~~~~  118 (295)
                      .||||||.|+||.      ||+|++++|+|||+|+++.+.+.+ +++++|+++.+..     ....+.  .++.++..+.
T Consensus         1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (231)
T cd04183           1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIF-DSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG   79 (231)
T ss_pred             CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccC-CceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence            4899999999994      799999999999999999999885 9999999874322     222221  2456555544


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~  198 (295)
                      ...|...++..|+..+. ..+.+++++||+ +++. .+..+++.+.+.. ...++.....     ..+.+..+..|++|+
T Consensus        80 ~~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~~-~~~~~~~~~~~~~-~~~~i~~~~~-----~~~~~~~v~~d~~~~  150 (231)
T cd04183          80 ETLGAACTVLLAADLID-NDDPLLIFNCDQ-IVES-DLLAFLAAFRERD-LDGGVLTFFS-----SHPRWSYVKLDENGR  150 (231)
T ss_pred             CCCcHHHHHHHHHhhcC-CCCCEEEEecce-eecc-CHHHHHHHhhccC-CceEEEEEeC-----CCCCeEEEEECCCCC
Confidence            45566678888888874 236799999999 4444 5666776665432 1112222221     122333445678888


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHH-HHhh-ccc---CCC---CCCcccchhhhhhhhhCCceEEEEEe-
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN-FLKI-YPG---LHP---TPLQLEEDLEQLKVLENGYKMKVIKV-  269 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~-~l~~-~~~---~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~-  269 (295)
                      +..+.++..           .....++|+|+|+++ .+.. +..   ...   .+...++.+  ..++..|.+|.++.. 
T Consensus       151 v~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i--~~~~~~g~~v~~~~~~  217 (231)
T cd04183         151 VIETAEKEP-----------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLY--NELILDGKKVGIYLID  217 (231)
T ss_pred             EEEeEEcCC-----------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHH--HHHHHcCCEEEEEEec
Confidence            887766521           124679999999987 4432 221   111   112223332  234567889999998 


Q ss_pred             cCCcCCCCCHHHHH
Q 022555          270 DHEAHGVDAPEDVE  283 (295)
Q Consensus       270 ~~~~idIdtpeDl~  283 (295)
                      ++.|.|||||+||+
T Consensus       218 ~~~w~di~t~~dl~  231 (231)
T cd04183         218 KDDYHSFGTPEDLE  231 (231)
T ss_pred             cccEEEcCChHhcC
Confidence            58999999999984

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.87  E-value=1.8e-20  Score=178.39  Aligned_cols=235  Identities=17%  Similarity=0.231  Sum_probs=155.0

Q ss_pred             CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--C----
Q 022555           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G----  110 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--~----  110 (295)
                      |.++.|||||||.|+||.      ||+|+|++|+ |||+|+++.+.++ ++++|+|+++.  +.+.++++. +  +    
T Consensus         1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~   79 (436)
T PLN02241          1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYNFGNGGN   79 (436)
T ss_pred             CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCCCCCCcc
Confidence            456889999999999995      7999999997 9999999999987 59999999974  566666543 1  1    


Q ss_pred             -----CeEEeCCCC-----CCCc-HHHHHHHHHHcccc----CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEee
Q 022555          111 -----ADVIMTSES-----CRNG-TERCNEALQKLEKK----YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV  175 (295)
Q Consensus       111 -----~~v~~~~~~-----~~g~-~~~i~~al~~~~~~----~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~  175 (295)
                           +.+....+.     ...| ..+++.++..+...    .+.|+++++|. +. ..++.++++.|+++ ++.+++..
T Consensus        80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v~-~~dl~~ll~~h~~~-~a~~ti~~  156 (436)
T PLN02241         80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-LY-RMDYMDFVQKHRES-GADITIAC  156 (436)
T ss_pred             cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-EE-ccCHHHHHHHHHHc-CCCEEEEE
Confidence                 112111111     1223 35566666554321    36899999999 43 46799999988765 34344444


Q ss_pred             eeCCCCCCCCCCceEE-EECCCCeEEEeecCCCCCCCCC-------------CCCCCCCceEEEeEEEecHHHHhhc-cc
Q 022555          176 TSLKPEDAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSG-------------KVNPQFPYLLHLGIQSYDSNFLKIY-PG  240 (295)
Q Consensus       176 ~~~~~~~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~-------------~~~~~~p~~~~~Giyif~~~~l~~~-~~  240 (295)
                      .++..+   ++..+.+ .+|+++++..|.|+|.. +...             ...+..+...++|+|+|++++|..+ ..
T Consensus       157 ~~v~~~---~~~~ygvv~~d~~~~v~~~~Ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~  232 (436)
T PLN02241        157 LPVDES---RASDFGLMKIDDTGRIIEFSEKPKG-DELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRW  232 (436)
T ss_pred             Eecchh---hcCcceEEEECCCCCEEEEEECCCC-cccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHh
Confidence            444321   2233433 45778999999988521 1100             0001113688999999999998653 32


Q ss_pred             CCCCCCcc-cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555          241 LHPTPLQL-EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       241 ~~~~~~~~-~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      ..+..... .|.+  ..++..|.+|++++.+++|.||++|+||..|+..+..
T Consensus       233 ~~~~~~~~~~dil--~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~  282 (436)
T PLN02241        233 RFPTANDFGSEII--PGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTK  282 (436)
T ss_pred             hcccccchhHHHH--HHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhc
Confidence            22221111 2222  1234467899999998999999999999999987653

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.86  E-value=1.6e-20  Score=160.78  Aligned_cols=117  Identities=17%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             CCCCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc
Q 022555           45 NFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG  123 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~  123 (295)
                      .-.|++.+||||||+|+||+ +|++++++|+|||+|+++++..  .+++|+|++++.+........++.++.++....|+
T Consensus         3 ~~~~~~~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G~   80 (200)
T PRK02726          3 TVKNNLVALILAGGKSSRMGQDKALLPWQGVPLLQRVARIAAA--CADEVYIITPWPERYQSLLPPGCHWLREPPPSQGP   80 (200)
T ss_pred             CcCCCceEEEEcCCCcccCCCCceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCCh
Confidence            34577899999999999997 8999999999999999999975  37899999985433222222356666655555678


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      ..+++.|+..+.  .+++++++||+||+++++++.+++.+..
T Consensus        81 ~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         81 LVAFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             HHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            889999999884  5789999999999999999999998754

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.86  E-value=8.3e-21  Score=177.05  Aligned_cols=224  Identities=13%  Similarity=0.117  Sum_probs=143.8

Q ss_pred             ceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--h-HHHHHHHH---cCCe---
Q 022555           49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--E-KIAECCQQ---FGAD---  112 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~-~i~~~~~~---~~~~---  112 (295)
                      .+.|||||||.|+||.      ||+|+|++|+ |||+|+++.|.++ ++++|+|+++.  + .+++++.+   ++.+   
T Consensus         2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~   80 (369)
T TIGR02092         2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR   80 (369)
T ss_pred             cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence            3569999999999995      7999999999 9999999999998 59999999985  4 77777742   2322   


Q ss_pred             ----E-EeCCCCC--CCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCC
Q 022555          113 ----V-IMTSESC--RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF  184 (295)
Q Consensus       113 ----v-~~~~~~~--~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~  184 (295)
                          + +..++..  .|+..++..++..+.. ..+.|+++++|.  +...++.++++.|.++ ++.+++...++..+   
T Consensus        81 ~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~--l~~~dl~~ll~~h~~~-~a~~tl~~~~v~~~---  154 (369)
T TIGR02092        81 DGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM--VCNIDLKAVLKYHEET-GKDITVVYKKVKPA---  154 (369)
T ss_pred             CcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE--EEecCHHHHHHHHHHc-CCCEEEEEEecCHH---
Confidence                1 2222221  1333346677777631 246899999998  4457899999988764 33344443443211   


Q ss_pred             CCCce--EEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCC-CCcccchhhhhhhhhC
Q 022555          185 DPNRV--KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPT-PLQLEEDLEQLKVLEN  260 (295)
Q Consensus       185 ~p~~~--~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~-~~~~~d~~~~~~~~~~  260 (295)
                      ++..+  .+..+++|.+..+.++. +        ++.+...++|+|+|+++.|..+. ...+. .....+.+. ..++ .
T Consensus       155 ~~~~~g~vv~~~~~g~v~~~~~~~-~--------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i-~~~~-~  223 (369)
T TIGR02092       155 DASEYDTILRFDESGKVKSIGQNL-N--------PEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELI-RENL-K  223 (369)
T ss_pred             HccccCcEEEEcCCCCEEeccccC-C--------CCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHH-HHHh-c
Confidence            12222  23356667776653322 1        11134578999999998764322 11111 111111110 1122 3


Q ss_pred             CceEEEEEecCCcCCCCCHHHHHHHHHHHH
Q 022555          261 GYKMKVIKVDHEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       261 G~~v~~v~~~~~~idIdtpeDl~~ae~ll~  290 (295)
                      +.++..+..+++|+||+||+||..|+..+.
T Consensus       224 ~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l  253 (369)
T TIGR02092       224 ELNINAYEYTGYLANINSVKSYYKANMDLL  253 (369)
T ss_pred             cCcEEEEecCCceeEcCCHHHHHHHHHHHh
Confidence            567888888889999999999999995443

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=99.86  E-value=2.6e-20  Score=158.34  Aligned_cols=114  Identities=25%  Similarity=0.371  Sum_probs=92.0

Q ss_pred             CCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCC-CCCc
Q 022555           47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSES-CRNG  123 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~-~~g~  123 (295)
                      ||++.+||||||.|+|| + +|++++++|+|||+|+++.+.  +.+++|+|+++.+. .. ..+.++.++.++.. ..|.
T Consensus         1 ~~~~~~vILA~G~s~Rm~~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~-~~~~~~~~v~~~~~~~~g~   76 (193)
T PRK00317          1 MPPITGVILAGGRSRRMGGVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR-YAAFGLPVIPDSLADFPGP   76 (193)
T ss_pred             CCCceEEEEcCCCcccCCCCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH-HHhcCCcEEeCCCCCCCCC
Confidence            67889999999999999 4 899999999999999999998  36899999987542 22 23456666554322 2466


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      ..+++.|+...  +.+.+++++||+||+++++++.+++.+.+.
T Consensus        77 ~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  117 (193)
T PRK00317         77 LAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGKD  117 (193)
T ss_pred             HHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence            77899999875  468999999999999999999999987543

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.86  E-value=8e-20  Score=173.37  Aligned_cols=232  Identities=14%  Similarity=0.109  Sum_probs=150.7

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcc-hHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cC------C
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG------A  111 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkp-Ll~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~------~  111 (295)
                      +++.|||||||.|+||.      ||+|+|++|+| ||+|+++.+.++ ++++|+|+++.  +.+.+++.+ ++      .
T Consensus        14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~   92 (425)
T PRK00725         14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFREELG   92 (425)
T ss_pred             cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccccCCC
Confidence            45789999999999995      79999999997 999999999987 59999999983  556555543 21      1


Q ss_pred             -eEE-eCC------CC-CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555          112 -DVI-MTS------ES-CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE  181 (295)
Q Consensus       112 -~v~-~~~------~~-~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~  181 (295)
                       .+. ..+      +. ..|...+++.++..+.. ..+.|++++||+ + ...++.++++.+.++. +.+++...++.. 
T Consensus        93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~-l-~~~dl~~ll~~h~~~~-~~~tl~~~~~~~-  168 (425)
T PRK00725         93 EFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH-I-YKMDYSRMLADHVESG-ADCTVACLEVPR-  168 (425)
T ss_pred             CeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe-E-eccCHHHHHHHHHHcC-CCEEEEEEecch-
Confidence             111 111      11 13444678888888752 246899999998 3 3568999999887642 223333333321 


Q ss_pred             CCCCCCceEE-EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCC---CCCcc-cchhhhh
Q 022555          182 DAFDPNRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP---TPLQL-EEDLEQL  255 (295)
Q Consensus       182 ~~~~p~~~~v-~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~---~~~~~-~d~~~~~  255 (295)
                        .++..+++ ..|++|++..|.|+|.. +.+ ...+.....+++|+|+|++++|.. +.+...   ...++ +|.+   
T Consensus       169 --~~~~~yG~v~~d~~~~V~~~~EKp~~-~~~-~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii---  241 (425)
T PRK00725        169 --EEASAFGVMAVDENDRITAFVEKPAN-PPA-MPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDII---  241 (425)
T ss_pred             --hhcccceEEEECCCCCEEEEEECCCC-ccc-cccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHH---
Confidence              12334444 46778899999887531 110 001112468899999999998754 322211   11122 2322   


Q ss_pred             hhhhCCceEEEEEec-----------CCcCCCCCHHHHHHHHHHHHH
Q 022555          256 KVLENGYKMKVIKVD-----------HEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       256 ~~~~~G~~v~~v~~~-----------~~~idIdtpeDl~~ae~ll~~  291 (295)
                      ..+....++..++..           ++|.||++|+||..|+..+..
T Consensus       242 ~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~  288 (425)
T PRK00725        242 PKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS  288 (425)
T ss_pred             HHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence            222233468887764           589999999999999877643

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.86  E-value=2.3e-20  Score=162.65  Aligned_cols=211  Identities=21%  Similarity=0.215  Sum_probs=136.3

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cCCeEEeCCCC-CC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGADVIMTSES-CR  121 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~~~v~~~~~~-~~  121 (295)
                      |||||||.|+||+      ||++++++|+|||+|+++++.+. ++++|+|+++.  +.+.+++.. .++.++.+++. ..
T Consensus         1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (229)
T cd02523           1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET   79 (229)
T ss_pred             CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence            6899999999996      79999999999999999999988 59999999984  455555544 35676666543 34


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      |...++..++..+   .+.+++++||+++ +.+.++.+++   .+.+..+.+  .+... +  ....+.+..++++.+..
T Consensus        80 g~~~s~~~~~~~~---~~~~lv~~~D~~~-~~~~~~~~~~---~~~~~~~~~--~~~~~-~--~~~~~~~~~~~~~~v~~  147 (229)
T cd02523          80 NNIYSLYLARDFL---DEDFLLLEGDVVF-DPSILERLLS---SPADNAILV--DKKTK-E--WEDEYVKDLDDAGVLLG  147 (229)
T ss_pred             CcHHHHHHHHHHc---CCCEEEEeCCEec-CHHHHHHHHc---CCCCCeEEE--ccCcc-c--ccccceeeecCccceEe
Confidence            5557788888887   3679999999975 6655554442   233433332  33211 1  11233333333366666


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC----CC---CCCcccchhhhhhhhh-CCceEEEEEecCCc
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL----HP---TPLQLEEDLEQLKVLE-NGYKMKVIKVDHEA  273 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~----~~---~~~~~~d~~~~~~~~~-~G~~v~~v~~~~~~  273 (295)
                      +.+++..        .......++|+|+|+++++..+...    .+   .....++.+  ..++. .+.++..+.. ++|
T Consensus       148 ~~~k~~~--------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i--~~l~~~~~~~v~~~~~-~~w  216 (229)
T cd02523         148 IISKAKN--------LEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDAL--QRLISEEGVKVKDISD-GFW  216 (229)
T ss_pred             ecccCCC--------cchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHhhcCeeEEEcCC-CCE
Confidence            6565321        1113468999999999997754321    11   112223322  12333 3555555555 799


Q ss_pred             CCCCCHHHHHHHH
Q 022555          274 HGVDAPEDVEKIE  286 (295)
Q Consensus       274 idIdtpeDl~~ae  286 (295)
                      .|||+|+||..|+
T Consensus       217 ~dI~~~ed~~~a~  229 (229)
T cd02523         217 YEIDDLEDLERAE  229 (229)
T ss_pred             EEeCCHHHHHhhC
Confidence            9999999999874

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.85  E-value=1e-19  Score=173.91  Aligned_cols=219  Identities=19%  Similarity=0.234  Sum_probs=146.3

Q ss_pred             EEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        51 ~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      .|||||||+|+||+   ||+|++++|+|||+|+++++.+.  .++|+|+++.  +.+.++.. .++.++..+ ...|...
T Consensus         2 ~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~~~i~~~~~-~~~~~~~~~-~~~g~~~   77 (448)
T PRK14357          2 RALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEAELVKKLLP-EWVKIFLQE-EQLGTAH   77 (448)
T ss_pred             eEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHhcc-cccEEEecC-CCCChHH
Confidence            49999999999996   79999999999999999999875  4889888874  33433332 245554443 3335556


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      +++.++..+. +.+.++++++|+|+++..+++++++.+.++ ++.+++...++     .+|..+.++..++|++ .+.++
T Consensus        78 ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-~~d~ti~~~~~-----~~~~~~g~v~~d~g~v-~~~e~  149 (448)
T PRK14357         78 AVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRK-GADVTILVADL-----EDPTGYGRIIRDGGKY-RIVED  149 (448)
T ss_pred             HHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCeEEEEEEEc-----CCCCCcEEEEEcCCeE-EEEEC
Confidence            7888988884 247899999999999999999999988653 33344444444     2344454443336777 55554


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecC--CcCCCCC
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDH--EAHGVDA  278 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~idIdt  278 (295)
                      +.. +  .  ..+..+..++|+|+|++++|.. +.++.+.    ++..+|.+.   .+   .++..+...+  .|+++++
T Consensus       150 ~~~-~--~--~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~---~~---~~v~~~~~~~~~~~~~i~~  218 (448)
T PRK14357        150 KDA-P--E--EEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVN---FA---EKVRVVKTEDLLEITGVNT  218 (448)
T ss_pred             CCC-C--h--HHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHH---hh---hheeEEecCCHHHEEccCC
Confidence            211 0  0  0111247899999999998755 3333211    122333321   11   3466766554  4889999


Q ss_pred             HHHHHHHHHHHHHh
Q 022555          279 PEDVEKIESFMRER  292 (295)
Q Consensus       279 peDl~~ae~ll~~r  292 (295)
                      |+||+.++.++.++
T Consensus       219 ~~~l~~~~~~~~~~  232 (448)
T PRK14357        219 RIQLAWLEKQLRMR  232 (448)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888654

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.85  E-value=1.9e-20  Score=159.21  Aligned_cols=214  Identities=20%  Similarity=0.238  Sum_probs=146.6

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEEC-C--chHHHHHHHHcC--CeEEeCCCCC
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQFG--ADVIMTSESC  120 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~-~--~~~i~~~~~~~~--~~v~~~~~~~  120 (295)
                      -..|||||||.||||+   ||+|++++|+|+|+|++++|++. ++++++||+ +  .+.++.+.++++  ..+++++...
T Consensus         3 ~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~   81 (239)
T COG1213           3 PMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYE   81 (239)
T ss_pred             ceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcc
Confidence            3569999999999997   79999999999999999999998 599999999 4  466777777776  4557776655


Q ss_pred             CCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEee-eeCCCCCCCCCCceEEEECCCCe
Q 022555          121 RNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV-TSLKPEDAFDPNRVKCVVDNHGY  198 (295)
Q Consensus       121 ~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~-~~~~~~~~~~p~~~~v~~d~~g~  198 (295)
                      .+. ..+++.|.+.+.   ..|+++++|. +.++..+++++++-.   ...++... ..+..++      ...+.+++|+
T Consensus        82 ktN~~~Sl~~akd~~~---~~fii~~sD~-vye~~~~e~l~~a~~---~~li~d~~~~~~~~~e------a~kv~~e~G~  148 (239)
T COG1213          82 KTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAPG---EGLIVDRRPRYVGVEE------ATKVKDEGGR  148 (239)
T ss_pred             cCCceeEEeeehhhhc---CcEEEEeCCE-eecHHHHHHHHhCcC---CcEEEeccccccccCc------eeEEEecCCE
Confidence            555 457888999884   3499999999 668889998887542   22222211 1111111      2224678999


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCC-CCcccchhhhhhhhhCCceEEEEEe---cCCc
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPT-PLQLEEDLEQLKVLENGYKMKVIKV---DHEA  273 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~-~~~~~d~~~~~~~~~~G~~v~~v~~---~~~~  273 (295)
                      +..+.++..           ......+|+..|+.+++....++ ... ..+..+.     ....+.+...+..   ...|
T Consensus       149 i~~igK~l~-----------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~-----~~~~~~~~~~~di~~~g~~w  212 (239)
T COG1213         149 IVEIGKDLT-----------EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREV-----EKEAGLPFTEVDIHVDGLFW  212 (239)
T ss_pred             EehhcCCcc-----------cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHH-----HHHhCCceEEeeccccCcee
Confidence            987666521           14567899999999987754322 111 1111111     1113344443332   2689


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 022555          274 HGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~~r  292 (295)
                      +|||||||+.+|.+.+-..
T Consensus       213 ~EVDtpeDl~~ar~~~~~~  231 (239)
T COG1213         213 MEVDTPEDLERARKYLVPN  231 (239)
T ss_pred             EecCCHHHHHHHHHHHHHH
Confidence            9999999999999887553

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=99.85  E-value=8.5e-20  Score=159.69  Aligned_cols=111  Identities=35%  Similarity=0.583  Sum_probs=88.9

Q ss_pred             EEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCc----hHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        52 aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~----~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      +||||||+|+||++|+|++++|+||++|+++++.+++.+++|+|+++.    +.+..++...++.++.++..  ++..+.
T Consensus         2 aiIlA~G~S~R~~~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~~   79 (233)
T cd02518           2 AIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGRY   79 (233)
T ss_pred             EEEeeCCCCCCCCCCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHHH
Confidence            799999999999999999999999999999999987558999999974    35666666667877766432  333333


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      ..++...  +.+++++++||+||+++++++++++.+..+
T Consensus        80 ~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~  116 (233)
T cd02518          80 YQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKS  116 (233)
T ss_pred             HHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence            4444433  468999999999999999999999988753

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=99.85  E-value=2.5e-20  Score=156.61  Aligned_cols=107  Identities=25%  Similarity=0.391  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHH
Q 022555           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (295)
Q Consensus        51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~  129 (295)
                      .+||||||+|+||+ +|++++++|+|||+|+++++.+.  +++|+|+++.+...  ....++.++.++....|+..++..
T Consensus         2 ~~iILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~   77 (181)
T cd02503           2 TGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILA   77 (181)
T ss_pred             cEEEECCCccccCCCCceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHH
Confidence            58999999999997 89999999999999999999865  78999999865433  334577776665445677889999


Q ss_pred             HHHHccccCCEEEEEeCCcccCCHHHHHHHHHHH
Q 022555          130 ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL  163 (295)
Q Consensus       130 al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~  163 (295)
                      |+..+.  .+.+++++||+||+++++++.+++.+
T Consensus        78 ~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          78 ALRAAP--ADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             HHHhcC--CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            999874  68999999999999999999999887

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.85  E-value=3.4e-20  Score=172.36  Aligned_cols=228  Identities=14%  Similarity=0.143  Sum_probs=147.0

Q ss_pred             EEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-cC--------CeE
Q 022555           52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG--------ADV  113 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~~--------~~v  113 (295)
                      |||||||.|+||.      ||+|+|++|+ |||+|+++.+.+. ++++|+|+++.  +.+.+++.+ ++        +.+
T Consensus         1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (361)
T TIGR02091         1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTL   79 (361)
T ss_pred             CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCEEE
Confidence            6899999999996      7999999999 8999999999988 59999999973  556665542 11        122


Q ss_pred             Ee------CCCCCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCCCCCCCC
Q 022555          114 IM------TSESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDAFD  185 (295)
Q Consensus       114 ~~------~~~~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~~~~~~~  185 (295)
                      +.      .++...|...+++.++..+.. ..+.|+++.||+ +. ...+.++++.+.+.. +..+.+  .++..+   +
T Consensus        80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~-l~-~~~l~~~l~~~~~~~~~~ti~~--~~~~~~---~  152 (361)
T TIGR02091        80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH-IY-KMDYEKMLDYHIESGADVTIAC--IPVPRK---E  152 (361)
T ss_pred             eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-cCCHHHHHHHHHHcCCCEEEEE--EecChH---h
Confidence            11      011123445678888887742 246799999999 33 457889998886542 233222  333211   2


Q ss_pred             CCce-EEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCCC---CCcc-cchhhhhhhhh
Q 022555          186 PNRV-KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPT---PLQL-EEDLEQLKVLE  259 (295)
Q Consensus       186 p~~~-~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~~---~~~~-~d~~~~~~~~~  259 (295)
                      +..+ .+..|++|++..|.+|+.. +.+. ...+.-+++++|+|+|++++|..+ ......   .... .+.+  ..++.
T Consensus       153 ~~~~g~v~~d~~~~v~~~~ekp~~-~~~~-~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l--~~l~~  228 (361)
T TIGR02091       153 ASRFGVMQVDEDGRIVDFEEKPAN-PPSI-PGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII--PRALE  228 (361)
T ss_pred             cccccEEEECCCCCEEEEEECCCC-cccc-cccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH--HHHhh
Confidence            2234 3346778899888887531 1111 001111378999999999997543 221111   1111 1222  12333


Q ss_pred             CCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          260 NGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       260 ~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      . .++..+..+.+|.||+|++||..|+..+.++
T Consensus       229 ~-~~v~~~~~~~~w~digt~~~~~~a~~~~l~~  260 (361)
T TIGR02091       229 E-GSVQAYLFSGYWRDVGTIDSFWEANMDLVSV  260 (361)
T ss_pred             c-CceEEEeeCCEEEECCCHHHHHHHHHHHhCC
Confidence            3 4799998888999999999999998777653

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=99.85  E-value=7e-20  Score=154.57  Aligned_cols=114  Identities=19%  Similarity=0.274  Sum_probs=91.5

Q ss_pred             EEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        52 aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      +||||||+|+||+ +|++++++|+|||+|+++++.+. .+++|+|+++++.   +..++..+++.++.++....|+..++
T Consensus         2 ~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si   80 (188)
T TIGR03310         2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSI   80 (188)
T ss_pred             eEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHH
Confidence            7999999999996 89999999999999999999887 4899999998654   33333345677766554445667788


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (295)
                      ..|++. ..+.+.+++++||+||++++.++++++.+..+.
T Consensus        81 ~~~l~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~  119 (188)
T TIGR03310        81 KLGLEL-PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKN  119 (188)
T ss_pred             HHHhcC-CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCC
Confidence            888872 224579999999999999999999999876543

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=99.85  E-value=2e-20  Score=153.97  Aligned_cols=114  Identities=32%  Similarity=0.494  Sum_probs=99.7

Q ss_pred             EEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555           52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA  130 (295)
Q Consensus        52 aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a  130 (295)
                      +||||||+||||+ +|+|++++|+|||+|+++.+.+.+ +++|+|+++.+++...+...+++++.++....|...+++.|
T Consensus         1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~~-~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a   79 (160)
T PF12804_consen    1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREAG-VDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAA   79 (160)
T ss_dssp             EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHHT-ESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHH
T ss_pred             CEEECCcCcccCCCCccceeECCccHHHHHHHHhhccC-CceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHH
Confidence            6999999999997 899999999999999999999885 89999999998777777777899888765566778899999


Q ss_pred             HHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555          131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (295)
Q Consensus       131 l~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (295)
                      +..+. ..+.|++++||+||+++++++++++.+.+++
T Consensus        80 ~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~  115 (160)
T PF12804_consen   80 LSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKSP  115 (160)
T ss_dssp             HHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred             HHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence            99874 4689999999999999999999999987643

...

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=99.85  E-value=9.7e-20  Score=154.44  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH--HHHHH----HHcCCeEEeCCCCCCCc
Q 022555           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECC----QQFGADVIMTSESCRNG  123 (295)
Q Consensus        51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~~~----~~~~~~v~~~~~~~~g~  123 (295)
                      .+||||||+|+||+ +|++++++|+|||+|+++.+.+. .+++|+|+++.+.  +....    ...++.++..+....|.
T Consensus         2 ~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~   80 (190)
T TIGR03202         2 VAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQ   80 (190)
T ss_pred             eEEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhH
Confidence            58999999999997 89999999999999999887765 5899999997532  11111    12345565555555566


Q ss_pred             HHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555          124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (295)
Q Consensus       124 ~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (295)
                      .+++..|++.+. .+.|++++++||+||+++++++++++.+.+.+
T Consensus        81 ~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~  125 (190)
T TIGR03202        81 AHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP  125 (190)
T ss_pred             HHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence            788999998763 24689999999999999999999999876543

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=1.2e-18  Score=151.09  Aligned_cols=224  Identities=14%  Similarity=0.144  Sum_probs=159.7

Q ss_pred             eEEEEEcCCCCCCC-C-----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--h----------HHHHHH-----
Q 022555           50 VVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--E----------KIAECC-----  106 (295)
Q Consensus        50 i~aiIlAaG~gsRl-~-----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~----------~i~~~~-----  106 (295)
                      ..|||||||.|||| |     ||-|+|+-+||+|+|+++.+.++ ++++|++||+.  .          +++..+     
T Consensus         5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K   83 (291)
T COG1210           5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK   83 (291)
T ss_pred             cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence            45999999999999 5     89999999999999999999998 59999999962  1          222221     


Q ss_pred             -------HHc--CCeEE-eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEee
Q 022555          107 -------QQF--GADVI-MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAV  175 (295)
Q Consensus       107 -------~~~--~~~v~-~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~~v~v~~  175 (295)
                             ++.  .+++. .+.....|-.+++..|-..++  ++.|.++.+|.-+.+ ...+.+|++.+.+...+++++. 
T Consensus        84 ~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~-  160 (291)
T COG1210          84 RELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE-  160 (291)
T ss_pred             HHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE-
Confidence                   111  34443 333233333456777878884  578999999986554 4688999999988666777763 


Q ss_pred             eeCCCCCCCCCCceEEEE----CCCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCC
Q 022555          176 TSLKPEDAFDPNRVKCVV----DNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPL  246 (295)
Q Consensus       176 ~~~~~~~~~~p~~~~v~~----d~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~  246 (295)
                       ++..++..   .|+++.    .+++  ++..+.|||.+.       ...+++...|-|+|++++|+.+.+..+   .++
T Consensus       161 -ev~~e~v~---kYGvi~~g~~~~~~~~~v~~~VEKP~~~-------~APSnlai~GRYil~p~IFd~L~~~~~G~ggEi  229 (291)
T COG1210         161 -EVPPEDVS---KYGVIDPGEPVEKGVYKVKGMVEKPKPE-------EAPSNLAIVGRYVLTPEIFDILEETKPGAGGEI  229 (291)
T ss_pred             -ECCHHHCc---ccceEecCccccCCeEEEEEEEECCCCC-------CCCcceeeeeeeecCHHHHHHHhhCCCCCCCEe
Confidence             45434433   455543    2233  677888987541       123478889999999999997766543   357


Q ss_pred             cccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555          247 QLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       247 ~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      +.||.+.  .++ ...+|.++..++..+|++++..|..|.--+..
T Consensus       230 QLTDai~--~L~-~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         230 QLTDAIK--KLL-KKEPVLAYVFEGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             eHHHHHH--HHH-hhCcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence            7888763  222 33789999999999999999999888755544

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.83  E-value=8.5e-19  Score=150.96  Aligned_cols=203  Identities=22%  Similarity=0.279  Sum_probs=136.6

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cCCeEEeC-CCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMT-SES  119 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~~~v~~~-~~~  119 (295)
                      |||||||.|+||+      ||++++++|+|||+|+++++.+.+ +++|+|+++.  +.+.+.+..   ++..+... +..
T Consensus         1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~   79 (217)
T cd04181           1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAG-IDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE   79 (217)
T ss_pred             CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCC-CCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence            6899999999995      799999999999999999999885 9999999984  455555543   34444222 222


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCe
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGY  198 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~  198 (295)
                      ..|...++..++..+  ..+.+++++||+. + ..++.++++.+.+. ++..++.+.+..     ++..+ .+..|++|+
T Consensus        80 ~~g~~~al~~~~~~~--~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~v~~d~~~~  149 (217)
T cd04181          80 PLGTAGAVRNAEDFL--GDDDFLVVNGDVL-T-DLDLSELLRFHREK-GADATIAVKEVE-----DPSRYGVVELDDDGR  149 (217)
T ss_pred             CCccHHHHHHhhhhc--CCCCEEEEECCee-c-CcCHHHHHHHHHhc-CCCEEEEEEEcC-----CCCcceEEEEcCCCc
Confidence            345557788888887  3578999999994 4 34688888877653 223333334432     22233 345677789


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC-CCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId  277 (295)
                      +..+.+++..         .....+++|+|+|++++++.+..... .+....+.+  ..++.. .+|.+++.+++|.||+
T Consensus       150 v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~~-~~v~~~~~~g~w~dig  217 (217)
T cd04181         150 VTRFVEKPTL---------PESNLANAGIYIFEPEILDYIPEILPRGEDELTDAI--PLLIEE-GKVYGYPVDGYWLDIG  217 (217)
T ss_pred             EEEEEECCCC---------CCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHH--HHHHhc-CCEEEEEcCCEEecCC
Confidence            9888887521         11367899999999998865443221 111122222  122333 5799999888999986

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=99.82  E-value=4.2e-19  Score=149.81  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCC-CCCCCcHHH
Q 022555           50 VVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTER  126 (295)
Q Consensus        50 i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~-~~~~g~~~~  126 (295)
                      +.+||||||+|+||+  +|+|++++|+|||+|+++++..  .+++|+|+++.+.........++.++... ....|...+
T Consensus         1 ~~~iILAgG~s~Rmg~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~s   78 (186)
T TIGR02665         1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAG   78 (186)
T ss_pred             CeEEEEcCCccccCCCCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHH
Confidence            368999999999996  8999999999999999999974  48999999985543222223456665543 234567788


Q ss_pred             HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      ++.|+..+  +.+.+++++||+||++++.++++++.+.+
T Consensus        79 i~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  115 (186)
T TIGR02665        79 ILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA  115 (186)
T ss_pred             HHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence            99999887  35789999999999999999999998764

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.82  E-value=4.4e-19  Score=158.91  Aligned_cols=224  Identities=19%  Similarity=0.209  Sum_probs=141.6

Q ss_pred             EEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH--cCCeEEeCC
Q 022555           51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ--FGADVIMTS  117 (295)
Q Consensus        51 ~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~--~~~~v~~~~  117 (295)
                      .+||||||.|+||.       ||+|+++.| +|||+|+++++...+++++|+|+++.+   .+.+.+++  .+..++..+
T Consensus         2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep   81 (274)
T cd02509           2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILEP   81 (274)
T ss_pred             EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEECC
Confidence            48999999999992       799999999 999999999999875589999999853   34444443  234555543


Q ss_pred             CCCCCcHHHHHHHHHHccc--cCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceEE-E
Q 022555          118 ESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKC-V  192 (295)
Q Consensus       118 ~~~~g~~~~i~~al~~~~~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~v-~  192 (295)
                      . ..+...++..|+..+..  +.+.++++++|+++.+...+.++++.+.+  ..+.++++.+.+..+     ...+++ .
T Consensus        82 ~-~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~-----~t~yGyI~  155 (274)
T cd02509          82 E-GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP-----ETGYGYIE  155 (274)
T ss_pred             C-CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC-----CCCeEEEE
Confidence            2 33445567777766641  34689999999998776777777754432  124555555444321     123433 3


Q ss_pred             ECCC--C---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCc----------------c-c
Q 022555          193 VDNH--G---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQ----------------L-E  249 (295)
Q Consensus       193 ~d~~--g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~----------------~-~  249 (295)
                      .+++  |   +|..|.|||-. ........+..+++|+|+|+|+.+.|.. +.+..|+-+.                . .
T Consensus       156 ~~~~~~~~~~~V~~f~EKP~~-~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
T cd02509         156 AGEKLGGGVYRVKRFVEKPDL-ETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLE  234 (274)
T ss_pred             eCCcCCCCceEEeEEEECcCh-HHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhH
Confidence            4544  2   78899998631 1110111122468899999999877653 2222221000                0 0


Q ss_pred             chhh-------hhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555          250 EDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPED  281 (295)
Q Consensus       250 d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeD  281 (295)
                      +.+.       +..+++.-.++.+++.+..|-||++.+.
T Consensus       235 ~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~  273 (274)
T cd02509         235 EAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA  273 (274)
T ss_pred             HHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence            1010       1234555567888888899999998754

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=99.82  E-value=1.1e-18  Score=141.85  Aligned_cols=106  Identities=32%  Similarity=0.473  Sum_probs=92.9

Q ss_pred             EEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           52 GIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        52 aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      +||+|||+|+||+  -|||++++|||||.|+++.+.+  .+++|+|+++  .+.++.++...+++++..+..  |-...+
T Consensus         3 ~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl   78 (177)
T COG2266           3 AIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDL   78 (177)
T ss_pred             eEEecCCcccccCCCcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHH
Confidence            8999999999998  4999999999999999999987  4899999986  578888998888998876532  445668


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ..+++.+.   .++|++++|.||+.+.+|+.+++.+.
T Consensus        79 ~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          79 RFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             HHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence            89999984   38999999999999999999999886

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.82  E-value=8.6e-19  Score=149.52  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             CceEEEEEcCCCCCCCC-CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeC-CCCCCCcH
Q 022555           48 SRVVGIIPARFASSRFE-GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT-SESCRNGT  124 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~-~~~~~g~~  124 (295)
                      +++.+||||||+|+||+ +|++++++| +|||+|+++++...  +++|+|+++++..     ..++.++.+ .....++.
T Consensus         7 ~~i~~vILAgG~s~RmG~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~~-----~~~~~~v~d~~~~~~gpl   79 (196)
T PRK00560          7 DNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKKF-----EFNAPFLLEKESDLFSPL   79 (196)
T ss_pred             cCceEEEECCcccccCCCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchhc-----ccCCcEEecCCCCCCCcH
Confidence            45889999999999997 899999999 99999999999864  7899999886321     234555554 22234555


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHH
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVV  160 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li  160 (295)
                      .++..++...  +.+++++++||+||++++++++++
T Consensus        80 ~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~  113 (196)
T PRK00560         80 FGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLC  113 (196)
T ss_pred             HHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHH
Confidence            6677777665  368999999999999999999884

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=99.81  E-value=1.6e-18  Score=146.11  Aligned_cols=119  Identities=19%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555           51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER  126 (295)
Q Consensus        51 ~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~~~  126 (295)
                      .+||||||+|+||+  +|++++++|+|||+|+++++.+.+ +++|+|++++  +.++.++++.+..+ .. ....|...+
T Consensus         2 ~aIILAgG~gsRmg~~~K~Ll~i~GkplI~~vi~~l~~~~-i~~I~Vv~~~~~~~~~~~l~~~~~~~-~~-~~g~G~~~~   78 (183)
T TIGR00454         2 DALIMAGGKGTRLGGVEKPLIEVCGRCLIDHVLSPLLKSK-VNNIIIATSPHTPKTEEYINSAYKDY-KN-ASGKGYIED   78 (183)
T ss_pred             eEEEECCccCccCCCCCceEeEECCEEHHHHHHHHHHhCC-CCEEEEEeCCCHHHHHHHHhhcCcEE-Ee-cCCCCHHHH
Confidence            48999999999996  699999999999999999998774 9999999873  45666665433333 32 233455677


Q ss_pred             HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 022555          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (295)
Q Consensus       127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v  173 (295)
                      +..|++.+. ..++++++.||+||+++++++.+++.+...+....++
T Consensus        79 l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~  124 (183)
T TIGR00454        79 LNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAV  124 (183)
T ss_pred             HHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEE
Confidence            888888653 2468999999999999999999999886543333333

At this time this gene appears to be present only in Archea

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=99.81  E-value=1.4e-18  Score=161.99  Aligned_cols=112  Identities=15%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             CCceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      ++++.+||||||+|+||| +|+|++++|+|||+|+++++..  .+++|+|+++++....+ ...++.++.++....|+..
T Consensus       172 ~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~Gpl~  248 (369)
T PRK14490        172 EVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDIGPLG  248 (369)
T ss_pred             cCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCCCcHH
Confidence            466789999999999997 8999999999999999999975  37889998876543333 3457777766544567788


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHH
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL  163 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~  163 (295)
                      ++..|++...  .+.++++.||+||++++.++.+++..
T Consensus       249 gi~~al~~~~--~~~~lv~~~DmP~i~~~~i~~L~~~~  284 (369)
T PRK14490        249 GLLSAQRHHP--DAAWLVVACDLPFLDEATLQQLVEGR  284 (369)
T ss_pred             HHHHHHHhCC--CCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence            8999988763  56899999999999999999998864

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=99.80  E-value=8.4e-19  Score=147.30  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch--HHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555           50 VVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGTER  126 (295)
Q Consensus        50 i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~--~i~~~~~~~~~~v~~~~~~~~g~~~~  126 (295)
                      +.+||||||+|+||+ +|++++++|+|||+|+++++.+. .+++|+|+++++  .+...+..+++.++.++....|...+
T Consensus         1 ~~~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~   79 (186)
T cd04182           1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAGLPVVVVINPDWEEGMSSS   79 (186)
T ss_pred             CeEEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcCCCeEEEeCCChhhCHHHH
Confidence            358999999999998 89999999999999999999987 489999999754  33333334456555554444566778


Q ss_pred             HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      +..|++.+....|++++++||+||++++.++++++.+.++
T Consensus        80 i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  119 (186)
T cd04182          80 LAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRED  119 (186)
T ss_pred             HHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence            9999998753368999999999999999999999988643

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=99.80  E-value=2.1e-18  Score=146.06  Aligned_cols=115  Identities=22%  Similarity=0.382  Sum_probs=93.0

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHH
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER  126 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~  126 (295)
                      ++++.+||||||+|+||.+|.+++++|+||++|++++++..  ++.++|+.+.+. .. ...++++++.......|++.+
T Consensus         2 ~~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~G   77 (192)
T COG0746           2 MTPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAG   77 (192)
T ss_pred             CCCceEEEecCCccccccccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHH
Confidence            35678999999999999889999999999999999999864  555555555432 22 334578877665444488899


Q ss_pred             HHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555          127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (295)
Q Consensus       127 i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (295)
                      ++.|+....  .++++++.||+||++++.++.+++.+.+.+
T Consensus        78 i~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          78 ILAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             HHHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            999999984  689999999999999999999999887654

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.78  E-value=1.1e-17  Score=160.32  Aligned_cols=228  Identities=15%  Similarity=0.161  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHHcCC---eEEe
Q 022555           50 VVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQFGA---DVIM  115 (295)
Q Consensus        50 i~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~~~~---~v~~  115 (295)
                      +.+||||||.|+||.       ||+|+++.| +|||+|+++++... .+++++|+++.+   .+.+.++.++.   .++.
T Consensus         1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~   79 (468)
T TIGR01479         1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL   79 (468)
T ss_pred             CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence            358999999999994       799999976 89999999999887 488999999853   33445555543   2444


Q ss_pred             CCCCCCCcHHHHHHHHHHcc---ccCCEEEEEeCCcccCCHHHHHHHHHHHH---hCCCcEEEEeeeeCCCCCCCCCCce
Q 022555          116 TSESCRNGTERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQ---AAPDAVFSTAVTSLKPEDAFDPNRV  189 (295)
Q Consensus       116 ~~~~~~g~~~~i~~al~~~~---~~~d~vlv~~~D~Pli~~~~i~~li~~~~---~~~d~~v~v~~~~~~~~~~~~p~~~  189 (295)
                      .+. ..+...++..|...+.   .+.+.++++++|+++.++..+.++++.+.   ++ +.++++.+.+..     ++..|
T Consensus        80 Ep~-~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~-~~lvtlgi~p~~-----p~t~Y  152 (468)
T TIGR01479        80 EPV-GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAE-GKLVTFGIVPTH-----PETGY  152 (468)
T ss_pred             ccc-ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhc-CCEEEEEecCCC-----CCCCc
Confidence            332 2233334443433331   12456999999999888788888887652   23 455555443321     11234


Q ss_pred             EEE-ECC------CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCC----------------
Q 022555          190 KCV-VDN------HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTP----------------  245 (295)
Q Consensus       190 ~v~-~d~------~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~----------------  245 (295)
                      +.+ .++      .++|..|.|||-. ........+..+++|+|+|+|+.+.|.. +.+..|+-                
T Consensus       153 GyI~~~~~~~~~~~~~V~~f~EKP~~-~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~  231 (468)
T TIGR01479       153 GYIRRGEPLAGEDVYQVQRFVEKPDL-ATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLD  231 (468)
T ss_pred             eEEEeCCccCCCCceEEeEEEECCCh-HHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcc
Confidence            333 442      2578899998632 1100001111368999999999766553 22222110                


Q ss_pred             -Ccccchh-h-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555          246 -LQLEEDL-E-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE  286 (295)
Q Consensus       246 -~~~~d~~-~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae  286 (295)
                       ..+.+.. .       +..+++...++.+++.+..|-|++++++|..+.
T Consensus       232 ~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       232 FIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             cceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence             0000000 0       113456677899999999999999999997753

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional

Probab=99.77  E-value=1.6e-17  Score=152.57  Aligned_cols=111  Identities=13%  Similarity=0.114  Sum_probs=89.7

Q ss_pred             ceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           49 RVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      ++.+||||||+|+||| +|.|++++|+||++|+++.+..  .+++|+|+++++..... ....+.++.+.....|+..++
T Consensus       160 ~i~~IILAGGkSsRMG~dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~~~~~-~~~~v~~I~D~~~~~GPlagI  236 (346)
T PRK14500        160 PLYGLVLTGGKSRRMGKDKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQWQGT-PLENLPTLPDRGESVGPISGI  236 (346)
T ss_pred             CceEEEEeccccccCCCCcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchHhhhc-cccCCeEEeCCCCCCChHHHH
Confidence            6789999999999997 8999999999999999999875  37899999876532211 112455555555566889999


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      +.|+....  .+.++++.||+||++++.+..+++.+.
T Consensus       237 ~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~  271 (346)
T PRK14500        237 LTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYR  271 (346)
T ss_pred             HHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence            99999864  356799999999999999999998764

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.76  E-value=2.6e-17  Score=149.90  Aligned_cols=227  Identities=18%  Similarity=0.171  Sum_probs=156.6

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCchH--HHHHHHH----------
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDDEK--IAECCQQ----------  108 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~~~~~----------  108 (295)
                      .++.|+|||||.|+||.      .||-+||+|| -||..+|.++..+ ++.+|.|.|+...  +.+.+..          
T Consensus         4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~   82 (393)
T COG0448           4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKN   82 (393)
T ss_pred             cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCCcccccccc
Confidence            35779999999999996      5999999998 5999999999998 5999999998533  2222211          


Q ss_pred             cCCeEEeC-----C-CCCCCcHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCC
Q 022555          109 FGADVIMT-----S-ESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE  181 (295)
Q Consensus       109 ~~~~v~~~-----~-~~~~g~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~  181 (295)
                      .++.++..     . .+.+|+..++++-+..+. .+.+.++++.||+-+  .-+++++++.|.+. ++.+++.+.++..+
T Consensus        83 ~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIY--kmDy~~ml~~H~~~-gadiTv~~~~Vp~~  159 (393)
T COG0448          83 GGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIY--KMDYSDMLDFHIES-GADVTVAVKEVPRE  159 (393)
T ss_pred             CcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEE--ecCHHHHHHHHHHc-CCCEEEEEEECChH
Confidence            12222221     1 134455566766555543 357899999999844  67899999999874 34556666777766


Q ss_pred             CCCCCCceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCC---CCCcccchhhhhhh
Q 022555          182 DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHP---TPLQLEEDLEQLKV  257 (295)
Q Consensus       182 ~~~~p~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~---~~~~~~d~~~~~~~  257 (295)
                      ++...+-  +..|++|+++.|.|||..  .     .+.-.....|+|+|+++.|..+.+ ...   +...+..++ ...+
T Consensus       160 eas~fGi--m~~D~~~~i~~F~eKp~~--~-----~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Dfgkdi-Ip~~  229 (393)
T COG0448         160 EASRFGV--MNVDENGRIIEFVEKPAD--G-----PPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDI-IPKL  229 (393)
T ss_pred             hhhhcCc--eEECCCCCEEeeeeccCc--C-----CcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHH-HHHH
Confidence            5544332  247999999999998631  0     111125789999999999987543 222   112222222 1123


Q ss_pred             hhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555          258 LENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       258 ~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll  289 (295)
                      +..|. +.+++.+++|-||+|.+.|..|+--|
T Consensus       230 ~~~~~-v~AY~f~gYw~dVgTi~syy~aNmdL  260 (393)
T COG0448         230 LERGK-VYAYEFSGYWRDVGTIDSYYEANMDL  260 (393)
T ss_pred             HhcCC-EEEEeccchhhhcccHHHHHHhhHHh
Confidence            45666 99999999999999999999988544

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.74  E-value=9.6e-17  Score=138.93  Aligned_cols=178  Identities=17%  Similarity=0.185  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc---C-----CeEE
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G-----ADVI  114 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~---~-----~~v~  114 (295)
                      .|||||||.|+||.      ||+|+|++|+|||+|+++.+.++ ++++|+|+++  .+.+.+++.+.   +     ..+.
T Consensus         2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~   80 (217)
T cd04197           2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI   80 (217)
T ss_pred             eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence            48999999999995      79999999999999999999997 5999999997  46677666542   1     2232


Q ss_pred             -eCCCCCCCcHHHHHH--HHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEeeeeCCCCCC--CC
Q 022555          115 -MTSESCRNGTERCNE--ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPEDA--FD  185 (295)
Q Consensus       115 -~~~~~~~g~~~~i~~--al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~----~d~~v~v~~~~~~~~~~--~~  185 (295)
                       ...+...+....+..  +...+   .+.|++++||.  +....+..+++.|++.    .++.+++...++...+.  ..
T Consensus        81 ~~~~~~~~~~~~al~~~~~~~~~---~~~flv~~gD~--i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~  155 (217)
T cd04197          81 IIMSEDCRSLGDALRDLDAKGLI---RGDFILVSGDV--VSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT  155 (217)
T ss_pred             EEeCCCcCccchHHHHHhhcccc---CCCEEEEeCCe--eeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence             222222222222221  12222   35699999998  3456799999988763    35555555445432110  00


Q ss_pred             CCceEEEECCC-CeEEEeecCCCCCCCCCCCCCC-----------CCceEEEeEEEecHHH
Q 022555          186 PNRVKCVVDNH-GYAIYFSRGLIPYNKSGKVNPQ-----------FPYLLHLGIQSYDSNF  234 (295)
Q Consensus       186 p~~~~v~~d~~-g~v~~~~~~~i~~~r~~~~~~~-----------~p~~~~~Giyif~~~~  234 (295)
                      .....+..|++ |+++.|.+++.....+......           ..+..++|+|+|++.+
T Consensus       156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~v  216 (217)
T cd04197         156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV  216 (217)
T ss_pred             CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCC
Confidence            01222345655 8999999986431211100000           1346678888888765

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=99.74  E-value=1.7e-16  Score=147.72  Aligned_cols=115  Identities=21%  Similarity=0.306  Sum_probs=87.4

Q ss_pred             CCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCeEEeCCCC-CCC
Q 022555           47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSES-CRN  122 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~v~~~~~~-~~g  122 (295)
                      |+++.+||||||+|+|| + +|+|++++|+|||+|+++++..  .+++|+|+++.+. ..+.... ++.++..... ..|
T Consensus         3 ~~~i~~VILAgG~s~Rmgg~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G   79 (366)
T PRK14489          3 ISQIAGVILAGGLSRRMNGRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQG   79 (366)
T ss_pred             CCCceEEEEcCCcccCCCCCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCC
Confidence            44678999999999999 4 8999999999999999999974  4889998665332 1222211 3444433222 245


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      ...+++.|++.+  +.+.+++++||+||+++++++++++.+..+
T Consensus        80 ~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~  121 (366)
T PRK14489         80 PLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAIE  121 (366)
T ss_pred             hHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhcc
Confidence            667899999987  357899999999999999999999987543

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=4.6e-17  Score=141.84  Aligned_cols=230  Identities=16%  Similarity=0.191  Sum_probs=154.3

Q ss_pred             CceEEEEEcCC--CCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHH----HHcCCeE
Q 022555           48 SRVVGIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC----QQFGADV  113 (295)
Q Consensus        48 ~~i~aiIlAaG--~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~----~~~~~~v  113 (295)
                      |++.|+||.||  +|+||.      ||||.|++|+|||+|-++++++.+++.+|+++-=  ++.+.++.    +++.+.+
T Consensus         1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv   80 (407)
T KOG1460|consen    1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV   80 (407)
T ss_pred             CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence            67889999999  899995      7999999999999999999999999999999874  33444433    4566655


Q ss_pred             EeCCCCCCCcH-HHHHHHHHHc-cccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE
Q 022555          114 IMTSESCRNGT-ERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC  191 (295)
Q Consensus       114 ~~~~~~~~g~~-~~i~~al~~~-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v  191 (295)
                      -+-.+..+-|+ .++++--+++ ...++.|++++||.  ...--+++|+++++.. ...++.+++++..+...   .++.
T Consensus        81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDV--CcsfPl~~ml~ahr~~-g~~~tll~tkvs~e~as---nfG~  154 (407)
T KOG1460|consen   81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADV--CCSFPLQDMLEAHRRY-GGIGTLLVTKVSREQAS---NFGC  154 (407)
T ss_pred             hhhccCCCCCcccceeehhhHHhcCCCceEEEEecce--ecCCcHHHHHHHHhhc-CCceEEEEEEecHhHhh---ccCe
Confidence            33222322232 3455555444 23578999999997  3344589999999764 45556666666654433   3333


Q ss_pred             E-EC-CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---------CCCc----c-cchh--h
Q 022555          192 V-VD-NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---------TPLQ----L-EEDL--E  253 (295)
Q Consensus       192 ~-~d-~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---------~~~~----~-~d~~--~  253 (295)
                      + .| ..|+++.+.+||..+         .++.+|.|+|+|++++|+...+...         +++.    . .|.+  +
T Consensus       155 lV~dP~t~evlHYveKPsTf---------vSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLe  225 (407)
T KOG1460|consen  155 LVEDPSTGEVLHYVEKPSTF---------VSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLE  225 (407)
T ss_pred             eeecCCcCceEEeecCcchh---------hhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEee
Confidence            3 34 358999888886422         2467899999999999875322110         0110    0 1111  1


Q ss_pred             h--hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          254 Q--LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       254 ~--~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      +  +.-++-.+.++.++..+.|--|.|+..-..|+.++-++
T Consensus       226 qDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~  266 (407)
T KOG1460|consen  226 QDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQ  266 (407)
T ss_pred             chhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHH
Confidence            1  12223345688888888999999999988888887764

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.71  E-value=1.6e-16  Score=135.85  Aligned_cols=172  Identities=14%  Similarity=0.135  Sum_probs=117.3

Q ss_pred             EEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH---cC-------Ce
Q 022555           52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-------AD  112 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~---~~-------~~  112 (295)
                      |||||||.|+||.      ||+|+|++|+ |||+|+++.+.++ ++++|+|+++.  +.+.++..+   ++       +.
T Consensus         1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (200)
T cd02508           1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF   79 (200)
T ss_pred             CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEE
Confidence            5899999999993      7999999998 9999999999987 59999999984  556655542   11       23


Q ss_pred             EEeC-----CCCCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC
Q 022555          113 VIMT-----SESCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP  186 (295)
Q Consensus       113 v~~~-----~~~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p  186 (295)
                      ++..     ++...|...++..|...+.. +.+.|++++||+  +...++.++++.+.++. +.+++..           
T Consensus        80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~~-~~~t~~~-----------  145 (200)
T cd02508          80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIESG-ADITVVY-----------  145 (200)
T ss_pred             EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHcC-CCEEEEE-----------
Confidence            3321     12233555678888888742 247899999999  45678999999887642 3222210           


Q ss_pred             CceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCC--CCCcccchhhhhhhhhCCce
Q 022555          187 NRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHP--TPLQLEEDLEQLKVLENGYK  263 (295)
Q Consensus       187 ~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~--~~~~~~d~~~~~~~~~~G~~  263 (295)
                            .                             .++|+|+|+++++..+.+ ...  .+...+|.+.  .++.. .+
T Consensus       146 ------~-----------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~--~l~~~-~~  187 (200)
T cd02508         146 ------K-----------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIP--AMLKK-LK  187 (200)
T ss_pred             ------h-----------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHH--HHhcc-Cc
Confidence                  0                             456779999998865432 211  1122234331  23334 58


Q ss_pred             EEEEEecCCcCCC
Q 022555          264 MKVIKVDHEAHGV  276 (295)
Q Consensus       264 v~~v~~~~~~idI  276 (295)
                      +.+++.+++|+||
T Consensus       188 v~~~~~~g~w~di  200 (200)
T cd02508         188 IYAYEFNGYWADI  200 (200)
T ss_pred             EEEEEeCCeEecC
Confidence            9999988899986

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=1.5e-15  Score=127.59  Aligned_cols=116  Identities=34%  Similarity=0.556  Sum_probs=99.0

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC----chHHHHHHHHcCCeEEeCCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~----~~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |++|.+||-|+=+|||+++|.|+|++|+|||+++++++++++.+++++|.|+    ++.++.++..+|+.++...  ...
T Consensus         1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrGs--~~d   78 (241)
T COG1861           1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRGS--EED   78 (241)
T ss_pred             CCcEEEEeeecccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecCC--HHH
Confidence            5789999999999999999999999999999999999999999999999997    3566778888898876532  123


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      -..+...+++..  +++.++-+.||+||++++.++..++.+.+.
T Consensus        79 VL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~  120 (241)
T COG1861          79 VLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAAVDRHLEK  120 (241)
T ss_pred             HHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence            345677888877  467999999999999999999999988764

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.62  E-value=2.5e-14  Score=136.45  Aligned_cols=232  Identities=15%  Similarity=0.172  Sum_probs=139.0

Q ss_pred             CCceEEEEEcCCCCCCC-C------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcC---Ce
Q 022555           47 RSRVVGIIPARFASSRF-E------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG---AD  112 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl-~------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~---~~  112 (295)
                      .|++.+||||||.|+|| |      ||+|+++.| +|||+++++++...+ +.+.+|+|+...   +.+.+...+   .+
T Consensus         3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~-~~~~iivt~~~~~~~v~~ql~~~~~~~~~   81 (478)
T PRK15460          3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVE-CESPVVICNEQHRFIVAEQLRQLNKLTEN   81 (478)
T ss_pred             CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCC-CCCcEEEeCHHHHHHHHHHHHhcCCcccc
Confidence            45678999999999999 4      799999955 799999999998764 566667787533   333333333   24


Q ss_pred             EEeCCCCCCCcHHHHHHHHHHcc-c--c-CCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCC
Q 022555          113 VIMTSESCRNGTERCNEALQKLE-K--K-YDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDP  186 (295)
Q Consensus       113 v~~~~~~~~g~~~~i~~al~~~~-~--~-~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p  186 (295)
                      ++..|. ..+....+..|...+. .  + .+.++++++|+..-+.+.+.+.++...+  ..+.++++-+.+..++.  .+
T Consensus        82 ii~EP~-~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeT--gy  158 (478)
T PRK15460         82 IILEPA-GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPET--GY  158 (478)
T ss_pred             EEecCC-CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCC--CC
Confidence            555443 2233334433333332 1  1 3578899999976666667666655431  22566666555543322  22


Q ss_pred             CceEEEECCC-------C--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC------------
Q 022555          187 NRVKCVVDNH-------G--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT------------  244 (295)
Q Consensus       187 ~~~~v~~d~~-------g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~------------  244 (295)
                      ++++  .++.       +  .|..|.|||-. .....+.++--+++|+|+|+|+.+.+.. +.+..|.            
T Consensus       159 GYI~--~g~~~~~~~~~~~~~V~~F~EKPd~-~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~  235 (478)
T PRK15460        159 GYIR--RGEVSAGEQDTVAFEVAQFVEKPNL-ETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAV  235 (478)
T ss_pred             CeEE--eCCccccccccCceEeeEEEeCCCH-HHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhc
Confidence            3332  2221       2  57899999621 1111222333578999999999988653 4333221            


Q ss_pred             --C---Ccc-cchhh-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555          245 --P---LQL-EEDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI  285 (295)
Q Consensus       245 --~---~~~-~d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a  285 (295)
                        +   ... .+.+.       +..+++.=.++.+++.+..|-|+++...+...
T Consensus       236 ~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~  289 (478)
T PRK15460        236 DPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI  289 (478)
T ss_pred             cCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence              0   000 00010       12344433458888998999999999988764

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=2.5e-14  Score=126.91  Aligned_cols=229  Identities=15%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCCC-C------Ccccccc-CCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHH---HHcCCe----EE
Q 022555           50 VVGIIPARFASSRF-E------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC---QQFGAD----VI  114 (295)
Q Consensus        50 i~aiIlAaG~gsRl-~------~K~l~~i-~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~---~~~~~~----v~  114 (295)
                      +..+|||||+|||| |      |||++.+ ++++|++.|+++++.....++++|+|+.+......   ++.+..    ++
T Consensus         2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il   81 (333)
T COG0836           2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII   81 (333)
T ss_pred             ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence            46899999999999 6      8999999 45999999999999855688999999965443322   221222    44


Q ss_pred             eCCCCCCCcHHHHHHHHHHc-cc-cCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceE
Q 022555          115 MTSESCRNGTERCNEALQKL-EK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVK  190 (295)
Q Consensus       115 ~~~~~~~g~~~~i~~al~~~-~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~  190 (295)
                      ..|. -.+....+..|...+ .. ....++++++|+-.-+.+.+.+.++...+  ....++++-+.|..++.  .+++++
T Consensus        82 lEP~-gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeT--GYGYIe  158 (333)
T COG0836          82 LEPE-GRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPET--GYGYIE  158 (333)
T ss_pred             eccC-CCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCcc--Ccceee
Confidence            4432 223333444333332 22 23479999999977777677777655532  12356666555543321  222332


Q ss_pred             EEECC-----CC-eEEEeecCCCCCCCCC--CCCCCCCceEEEeEEEecHHHHh-hcccCCCCCC---------------
Q 022555          191 CVVDN-----HG-YAIYFSRGLIPYNKSG--KVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPTPL---------------  246 (295)
Q Consensus       191 v~~d~-----~g-~v~~~~~~~i~~~r~~--~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~~~---------------  246 (295)
                        ..+     ++ .|.+|.|||   ++++  ..-..--+++|.|+++|+...+. ++.+..|+-+               
T Consensus       159 --~G~~~~~~~~~~V~~FvEKP---d~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~  233 (333)
T COG0836         159 --TGESIAENGVYKVDRFVEKP---DLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENS  233 (333)
T ss_pred             --cCcccccCCceEeeeeeeCC---CHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccch
Confidence              211     22 467899986   3221  11122248999999999987654 3444333210               


Q ss_pred             -cc-cchhh-------hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555          247 -QL-EEDLE-------QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE  286 (295)
Q Consensus       247 -~~-~d~~~-------~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae  286 (295)
                       +. .+.+.       +..+++.-.++.+++.+..|=|+++..-+....
T Consensus       234 ~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~  282 (333)
T COG0836         234 VRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL  282 (333)
T ss_pred             hcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence             00 00010       224555556889999999999999998876543

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.52  E-value=5e-13  Score=115.45  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHHHc------CCeEEe
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQF------GADVIM  115 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~~~------~~~v~~  115 (295)
                      .|||||||.|+||.      ||+|+|++|+|||+|+++.+.+. ++++|+|+++.   +.++++.+++      +..++.
T Consensus         2 ~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~   80 (214)
T cd04198           2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT   80 (214)
T ss_pred             EEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence            58999999999994      79999999999999999999987 59999999984   3455555543      122322


Q ss_pred             -CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeee
Q 022555          116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS  177 (295)
Q Consensus       116 -~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~  177 (295)
                       .+....|...+++.+...+   .+.|++++||.  +....+..+++.+++. ++.+++...+
T Consensus        81 ~~~~~~~gt~~al~~~~~~i---~~d~lv~~~D~--i~~~~l~~~l~~h~~~-~~~~t~~~~~  137 (214)
T cd04198          81 IVLDEDMGTADSLRHIRKKI---KKDFLVLSCDL--ITDLPLIELVDLHRSH-DASLTVLLYP  137 (214)
T ss_pred             ecCCCCcChHHHHHHHHhhc---CCCEEEEeCcc--ccccCHHHHHHHHhcc-CCcEEEEEec
Confidence             2233334456777787776   24599999994  6778899999988765 3444544443

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.48  E-value=7.8e-13  Score=114.45  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=77.1

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--------CCeE
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--------GADV  113 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--------~~~v  113 (295)
                      .|||||||.|+||.      ||+|+|++|+|||+|+++.+.+. ++++|+|+++.  +.+.+...+ +        ++.+
T Consensus         2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (216)
T cd02507           2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV   80 (216)
T ss_pred             eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence            48999999999994      79999999999999999999987 59999999974  333343332 1        1223


Q ss_pred             EeCCC-CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555          114 IMTSE-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA  162 (295)
Q Consensus       114 ~~~~~-~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~  162 (295)
                      +...+ ...|...+++.+...+.   +.|+++.||.  +....+..++++
T Consensus        81 ~~~~~~~~~Gta~~l~~~~~~i~---~dflv~~gD~--i~~~~l~~~l~~  125 (216)
T cd02507          81 ITSDLCESAGDALRLRDIRGLIR---SDFLLLSCDL--VSNIPLSELLEE  125 (216)
T ss_pred             EEccCCCCCccHHHHHHHhhcCC---CCEEEEeCCE--eecCCHHHHHHH
Confidence            33322 23344556777777762   4599999997  456678888864

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]

Probab=99.45  E-value=2.7e-12  Score=105.71  Aligned_cols=156  Identities=20%  Similarity=0.227  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCC-C
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESC-R  121 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~-~  121 (295)
                      .|||||||.||||.      ||+|+.+.|+|||++.++.|++. ++++|+||++  .+..+-+-.++++++++++... .
T Consensus         2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~y   80 (231)
T COG4750           2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREY   80 (231)
T ss_pred             ceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhh
Confidence            49999999999994      79999999999999999999998 5999999999  4555555567899999987643 2


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      +...+++.|...+.    ..-++++|..|. ...+    .....+ ..-+++-....+       +-+..+.+.+|.|..
T Consensus        81 Nn~ySlyla~d~l~----ntYiidsDnyl~-kNif----~~~~~~-S~Yfav~~~~~t-------nEw~l~~~~~~ki~~  143 (231)
T COG4750          81 NNIYSLYLARDFLN----NTYIIDSDNYLT-KNIF----LTKESH-SKYFAVYRSGKT-------NEWLLIYNSDGKITR  143 (231)
T ss_pred             hhHHHHHHHHHHhc----ccEEeccchHhh-hhhh----hcCccc-ceEEEEEecCCC-------ceeEEEEcCCCcEEE
Confidence            44568899998884    246779998543 2221    111111 112233211111       224345677888875


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  236 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~  236 (295)
                      +.-..    +        ....-.|+-.|+..+-.
T Consensus       144 v~Igg----~--------~~~imsG~sff~~~~~~  166 (231)
T COG4750         144 VDIGG----L--------NGYIMSGISFFDAQFSN  166 (231)
T ss_pred             EEecC----c--------ccceEeeeeeecchhHH
Confidence            43221    1        24567788888876543

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=99.41  E-value=5.3e-12  Score=105.92  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             CccccccCC--cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHc-cccCCEE
Q 022555           65 GKPLVNILG--KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIV  141 (295)
Q Consensus        65 ~K~l~~i~g--kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~-~~~~d~v  141 (295)
                      +|.+++++|  +|||+|+++.+..  .+++|+|+++.++  .+ ...++.++.+.....|++.++..|+... ....+++
T Consensus         4 dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~--~~-~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~   78 (178)
T PRK00576          4 DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ--PL-PELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA   78 (178)
T ss_pred             CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc--cc-ccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence            799999999  9999999998763  4899999997542  11 2345666544333446677777777654 2246899


Q ss_pred             EEEeCCcccCCHHHHHHHHHHHHh
Q 022555          142 VNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       142 lv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      +++.||+|++++++++++++.+.+
T Consensus        79 lv~~~DmP~i~~~~i~~L~~~~~~  102 (178)
T PRK00576         79 FVCAVDMPYLTVELIDDLARPAAQ  102 (178)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhhc
Confidence            999999999999999999987654

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=99.30  E-value=1.5e-10  Score=98.40  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=72.6

Q ss_pred             cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCH
Q 022555           74 KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP  153 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~  153 (295)
                      +|||+|+++.+.+.+ +++++|+++++++..++..+++.++.++.  .|..+++.+|++.+..+.+.++++.||+|++++
T Consensus        30 ~~ll~~~l~~l~~~~-~~~vvvv~~~~~~~~~~~~~~v~~i~~~~--~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~  106 (195)
T TIGR03552        30 LAMLRDVITALRGAG-AGAVLVVSPDPALLEAARNLGAPVLRDPG--PGLNNALNAALAEAREPGGAVLILMADLPLLTP  106 (195)
T ss_pred             HHHHHHHHHHHHhcC-CCCEEEECCCHHHHHHHHhcCCEEEecCC--CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH
Confidence            799999999999874 68899999887777776667888766543  366678999998875345689999999999999


Q ss_pred             HHHHHHHHHHHh
Q 022555          154 EIIDGVVKALQA  165 (295)
Q Consensus       154 ~~i~~li~~~~~  165 (295)
                      ++++++++.+.+
T Consensus       107 ~~i~~l~~~~~~  118 (195)
T TIGR03552       107 RELKRLLAAATE  118 (195)
T ss_pred             HHHHHHHHhccc
Confidence            999999998753

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=9e-11  Score=106.16  Aligned_cols=117  Identities=16%  Similarity=0.199  Sum_probs=83.2

Q ss_pred             CCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHH-HcCC---
Q 022555           45 NFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQ-QFGA---  111 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~-~~~~---  111 (295)
                      ..|+...+||+|||.|+||+      ||+|+|++++|||.|.++.|.++ ++.+|+|++..++   ++..+. .+..   
T Consensus         5 s~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~   83 (433)
T KOG1462|consen    5 SPMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKR   83 (433)
T ss_pred             cchHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCccccc
Confidence            45667889999999999998      89999999999999999999998 5999999998643   333332 1211   


Q ss_pred             --eEEeC--CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          112 --DVIMT--SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       112 --~v~~~--~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                        .+.+.  ..+.-|...++..--..+.  .+.|+++.||  |++.-.+..+++.|+..
T Consensus        84 ~~~v~ip~~~~~d~gtadsLr~Iy~kik--S~DflvlsCD--~Vtdv~l~~lvd~FR~~  138 (433)
T KOG1462|consen   84 PDYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVLSCD--FVTDVPLQPLVDKFRAT  138 (433)
T ss_pred             ccEEEeecccccccCCHHHHhhhhhhhc--cCCEEEEecc--cccCCCcHHHHHHHhcc
Confidence              11111  0112233344444444442  3469999999  58888899999999864

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.7e-06  Score=83.22  Aligned_cols=243  Identities=18%  Similarity=0.222  Sum_probs=152.4

Q ss_pred             eeCCCCCCC--CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH
Q 022555           39 YLGRSKNFR--SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ  108 (295)
Q Consensus        39 ~~~~~~~~~--~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~  108 (295)
                      +..+.+..+  .++.||++|=-.-+||.      |+.|+|+.+.|||+|+++.|.++ ++.+|+|.+.  ..++.+++++
T Consensus        12 ~~~~~~~~~~~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~   90 (673)
T KOG1461|consen   12 GETGKEENFREHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEK   90 (673)
T ss_pred             ccCcccccccccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhh
Confidence            344444443  56889999999999994      79999999999999999999988 5999999996  5677777754


Q ss_pred             c------CCeEEeCCCCCCCcHHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHH----hCCCcEEEEee
Q 022555          109 F------GADVIMTSESCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQ----AAPDAVFSTAV  175 (295)
Q Consensus       109 ~------~~~v~~~~~~~~g~~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~----~~~d~~v~v~~  175 (295)
                      .      ...+ ...  ..+...++..+++.+.+   ..+.|+++.+|.  ++...+.++++.|+    ++.+++++...
T Consensus        91 sew~~~~~~~v-~ti--~s~~~~S~GDamR~id~k~litgDFiLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~  165 (673)
T KOG1461|consen   91 SEWYLPMSFIV-VTI--CSGESRSVGDAMRDIDEKQLITGDFILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVF  165 (673)
T ss_pred             ccccccccceE-EEE--cCCCcCcHHHHHHHHHhcceeecceEEEeCCe--eecCchHHHHHHHHHHhhhCccceEEEEE
Confidence            1      1111 111  11233456677777642   246799999997  56678999999994    45678887765


Q ss_pred             eeCCCCCCCCCCceEEEEC-CCCeEEEeecCC-----CCCCCCCCCCCCC----CceEEEeEEEecHHHHhhcccCCCCC
Q 022555          176 TSLKPEDAFDPNRVKCVVD-NHGYAIYFSRGL-----IPYNKSGKVNPQF----PYLLHLGIQSYDSNFLKIYPGLHPTP  245 (295)
Q Consensus       176 ~~~~~~~~~~p~~~~v~~d-~~g~v~~~~~~~-----i~~~r~~~~~~~~----p~~~~~Giyif~~~~l~~~~~~~~~~  245 (295)
                      .+..  ...++..+-+.+| .+.+++++.+-.     +..+++.....+.    .......|-+.++.++..|.+-.  +
T Consensus       166 k~~s--t~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNF--D  241 (673)
T KOG1461|consen  166 KESS--TRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNF--D  241 (673)
T ss_pred             eccc--cccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcc--c
Confidence            4431  0112233433344 356777776511     1111111101000    01223577888888877654321  2


Q ss_pred             Ccccchhhhhhhh-h--CCceEEEEEecC--CcCCCCCHHHHHHHHHHHHHh
Q 022555          246 LQLEEDLEQLKVL-E--NGYKMKVIKVDH--EAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       246 ~~~~d~~~~~~~~-~--~G~~v~~v~~~~--~~idIdtpeDl~~ae~ll~~r  292 (295)
                      ++..+++- ..++ .  .|++|++.+.+.  +...|....-|....+-+-+|
T Consensus       242 yq~r~DfV-~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~R  292 (673)
T KOG1461|consen  242 YQTRDDFV-RGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQR  292 (673)
T ss_pred             ceehhhhh-hhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHh
Confidence            23222210 1122 2  599999999873  889999999998888776665

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=98.71  E-value=1e-06  Score=78.58  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhC-------CCCCeEEEECC--chHHHHHHHHcC---C
Q 022555           50 VVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLA-------TTLDHLVVATD--DEKIAECCQQFG---A  111 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~-------~~i~~IvVv~~--~~~i~~~~~~~~---~  111 (295)
                      +.+||||||.||||+   ||++++++   |+|++++.+++++..       ..+..+++.+.  ++.+.++++++.   .
T Consensus         1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~   80 (266)
T cd04180           1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS   80 (266)
T ss_pred             CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence            368999999999997   89999999   999999999999762       23555555554  466777776643   1


Q ss_pred             eE--EeCC-------------------CCCCCcHHHHHHHHHH------cc-ccCCEEEEEeCCcccCCH
Q 022555          112 DV--IMTS-------------------ESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEP  153 (295)
Q Consensus       112 ~v--~~~~-------------------~~~~g~~~~i~~al~~------~~-~~~d~vlv~~~D~Pli~~  153 (295)
                      .+  +.++                   ...+.|...++.+|..      +. ....++.+...|.++...
T Consensus        81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v  150 (266)
T cd04180          81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKV  150 (266)
T ss_pred             ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccc
Confidence            11  1110                   1122333445555542      21 245789999999988755

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc

Probab=98.50  E-value=5.5e-06  Score=75.87  Aligned_cols=111  Identities=20%  Similarity=0.223  Sum_probs=72.9

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCC-----------CCCeEEEECC---chHHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQ  107 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~-----------~i~~IvVv~~---~~~i~~~~~  107 (295)
                      .++.+||||||.||||+   ||++++++   |+|++++.++.++...           .+ .+++.|+   ++.+.++++
T Consensus        14 ~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~   92 (323)
T cd04193          14 GKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFK   92 (323)
T ss_pred             CCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHH
Confidence            35789999999999997   89999997   7999999999998632           13 4556665   466777775


Q ss_pred             H---cCC---eE--EeCC-------------------CCCCCcHHHHHHHHHHc------c-ccCCEEEEEeCCcccC--
Q 022555          108 Q---FGA---DV--IMTS-------------------ESCRNGTERCNEALQKL------E-KKYDIVVNIQGDEPLI--  151 (295)
Q Consensus       108 ~---~~~---~v--~~~~-------------------~~~~g~~~~i~~al~~~------~-~~~d~vlv~~~D~Pli--  151 (295)
                      +   +|.   .+  +.+.                   ...+.|...++.+|..-      . ..-+++.+...|+++.  
T Consensus        93 ~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~  172 (323)
T cd04193          93 ENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKV  172 (323)
T ss_pred             hCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccccc
Confidence            4   233   22  1110                   01233445566665432      1 2357899999999864  


Q ss_pred             -CHHHHHHH
Q 022555          152 -EPEIIDGV  159 (295)
Q Consensus       152 -~~~~i~~l  159 (295)
                       ++..|..+
T Consensus       173 ~Dp~~lG~~  181 (323)
T cd04193         173 ADPVFIGFC  181 (323)
T ss_pred             cCHHHhHHH
Confidence             44444433

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional

Probab=98.49  E-value=8.3e-06  Score=78.16  Aligned_cols=181  Identities=17%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC------------CCCeEEEECC---chHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT------------TLDHLVVATD---DEKIAECC  106 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~------------~i~~IvVv~~---~~~i~~~~  106 (295)
                      .++.+||||||.||||+   ||+++++   .|+|++++.++++....            ..-.++|.|+   ++.+.+++
T Consensus       105 gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f  184 (482)
T PTZ00339        105 GEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFL  184 (482)
T ss_pred             CCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHH
Confidence            46889999999999997   8999999   58999999999998641            1124566654   45666666


Q ss_pred             HHc---CC---eE--EeC--------C------------CCCCCcHHHHHHHHHHc------c-ccCCEEEEEeCCcccC
Q 022555          107 QQF---GA---DV--IMT--------S------------ESCRNGTERCNEALQKL------E-KKYDIVVNIQGDEPLI  151 (295)
Q Consensus       107 ~~~---~~---~v--~~~--------~------------~~~~g~~~~i~~al~~~------~-~~~d~vlv~~~D~Pli  151 (295)
                      +++   |.   .+  +.+        .            ...+.|...++.+|..-      . ..-.++.+...|+++.
T Consensus       185 ~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~  264 (482)
T PTZ00339        185 EENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILA  264 (482)
T ss_pred             HhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccc
Confidence            532   21   11  111        0            01223445577766432      1 2346899999999855


Q ss_pred             ---CHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCC--eEEEeecCCCCCCCCC--CCCCCCC-ceE
Q 022555          152 ---EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG--YAIYFSRGLIPYNKSG--KVNPQFP-YLL  223 (295)
Q Consensus       152 ---~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g--~v~~~~~~~i~~~r~~--~~~~~~p-~~~  223 (295)
                         +|..|..+++   .+...+...++ +....     ..++++...+|  .++.+++-.. ..++.  ....... ...
T Consensus       265 k~~DP~flG~~~~---~~~~~~~~kvv-k~~~~-----EkvG~~~~~~g~~~vvEYsEi~~-~~~~~~~~~~g~l~f~~g  334 (482)
T PTZ00339        265 KVLDPEFIGLASS---FPAHDVLNKCV-KREDD-----ESVGVFCLKDYEWQVVEYTEINE-RILNNDELLTGELAFNYG  334 (482)
T ss_pred             cccCHHHhHHHHH---CCchhheeeee-cCCCC-----CceeEEEEeCCcccEEEEeccCh-hhhhcccccCCeeccccc
Confidence               5655555443   12201222222 32211     13444432233  3444443210 01111  0011222 356


Q ss_pred             EEeEEEecHHHHhhc
Q 022555          224 HLGIQSYDSNFLKIY  238 (295)
Q Consensus       224 ~~Giyif~~~~l~~~  238 (295)
                      |++..+|+.++|...
T Consensus       335 nI~~h~fsl~fl~~~  349 (482)
T PTZ00339        335 NICSHIFSLDFLKKV  349 (482)
T ss_pred             ceEEEEEEHHHHHHH
Confidence            788899999999753

>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]

Probab=98.32  E-value=1.9e-05  Score=65.55  Aligned_cols=101  Identities=23%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             EEEEc---CCCCCCCC-------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCC
Q 022555           52 GIIPA---RFASSRFE-------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR  121 (295)
Q Consensus        52 aiIlA---aG~gsRl~-------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~  121 (295)
                      +||+-   ++.-||+.       +|.++    .-||.+++..+...  +.+|.|++.++++.....+.  +++..    .
T Consensus         3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~~~~~a~~~--~vl~d----~   70 (210)
T COG1920           3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEEVLVPATKL--EVLAD----P   70 (210)
T ss_pred             eEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChHhhhhcccc--eeeec----c
Confidence            45553   46668885       36555    46999999999853  68999999988776554332  44443    1


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      .-.+++.+++..++.. +.++++.+|.|++++++|.++++..+.
T Consensus        71 dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d  113 (210)
T COG1920          71 DLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD  113 (210)
T ss_pred             chHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC
Confidence            2234677888887633 679999999999999999999987653

>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis

Probab=98.20  E-value=4.4e-06  Score=71.93  Aligned_cols=102  Identities=27%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             EEEEEcCC---CCCCCCC-------ccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHH-HcCCeEEeCCCC
Q 022555           51 VGIIPARF---ASSRFEG-------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ-QFGADVIMTSES  119 (295)
Q Consensus        51 ~aiIlAaG---~gsRl~~-------K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~-~~~~~v~~~~~~  119 (295)
                      .+|||-..   .-||+.+       ..|.    .-|+.+++..+..   ++ |+|++.++.+...+. .+++.++..+  
T Consensus         2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La----~aMl~Dvl~al~~---v~-v~vVs~d~~v~~~a~~~~g~~vl~d~--   71 (217)
T PF01983_consen    2 RAVIPVKPLARAKSRLSPVLSPEEREALA----LAMLRDVLAALRA---VD-VVVVSRDPEVAALARARLGAEVLPDP--   71 (217)
T ss_dssp             EEEEE---TT-TTGGGTTTS-HHHHHHHH----HHHHHHHHHHHHH----S-EEEEES--S-TTTTT---SSEEEE----
T ss_pred             eEEEEcCCCCccccccCccCCHHHHHHHH----HHHHHHHHHHHHh---cC-eEEeccchhhhhhhhhccCCeEecCC--
Confidence            37777743   3477741       2222    4689999999975   66 888888777766554 6788887653  


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ..|-...+..|+...  ..+.++++++|.|++++++++.+++...
T Consensus        72 ~~gLN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~  114 (217)
T PF01983_consen   72 GRGLNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAG  114 (217)
T ss_dssp             -S-HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred             CCCHHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccC
Confidence            223334566664333  4578999999999999999999997654

One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose

Probab=97.93  E-value=0.00062  Score=61.59  Aligned_cols=227  Identities=15%  Similarity=0.140  Sum_probs=119.6

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhCC---CC-CeEEEECC---chHHHHHHHHcCC---eE
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TL-DHLVVATD---DEKIAECCQQFGA---DV  113 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~~---~i-~~IvVv~~---~~~i~~~~~~~~~---~v  113 (295)
                      .++.+|+||||.|||||   ||-++++ .|+++++..+++++...   +. =..+|.|+   +++..+++++++.   .+
T Consensus         2 ~kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v   81 (300)
T cd00897           2 NKLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDI   81 (300)
T ss_pred             CcEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCe
Confidence            46889999999999998   8999998 67899999999886421   12 25667665   4667777765531   11


Q ss_pred             --EeC-------------------C---CCCCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHH-HHH
Q 022555          114 --IMT-------------------S---ESCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDG-VVK  161 (295)
Q Consensus       114 --~~~-------------------~---~~~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~-li~  161 (295)
                        +.+                   +   ...+.|...++.+|..-       ...-+++.+.+.|+ +..  .++- ++.
T Consensus        82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN-L~a--~~Dp~~lg  158 (300)
T cd00897          82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGA--TVDLRILN  158 (300)
T ss_pred             EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc-ccc--cCCHHHHH
Confidence              110                   0   01222333466665432       12357899999998 542  2332 223


Q ss_pred             HHHhCCCcEEEEeeeeCCCCCCCCCC-ceEEEECCCCeEE--EeecCCCCCCCCCCCCCC-CCceEEEeEEEecHHHHhh
Q 022555          162 ALQAAPDAVFSTAVTSLKPEDAFDPN-RVKCVVDNHGYAI--YFSRGLIPYNKSGKVNPQ-FPYLLHLGIQSYDSNFLKI  237 (295)
Q Consensus       162 ~~~~~~d~~v~v~~~~~~~~~~~~p~-~~~v~~d~~g~v~--~~~~~~i~~~r~~~~~~~-~p~~~~~Giyif~~~~l~~  237 (295)
                      .+.++ ++.++.-+++-+     .|+ .++++...+|+..  ++.+  +|......+... .=..+|++...|+-++|.+
T Consensus       159 ~~~~~-~~~~~~evv~Kt-----~~dek~G~l~~~~g~~~vvEyse--~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~  230 (300)
T cd00897         159 HMVDN-KAEYIMEVTDKT-----RADVKGGTLIQYEGKLRLLEIAQ--VPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKR  230 (300)
T ss_pred             HHHhc-CCceEEEEeecC-----CCCCcccEEEEECCEEEEEEecc--CCHHHHHhhcCcccceEEEEeEEEEEHHHHHH
Confidence            33322 333444333221     111 3444444466643  3333  221100011111 1246788989999988875


Q ss_pred             ccc-----CC---------CC--CCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHHHHHHHHH
Q 022555          238 YPG-----LH---------PT--PLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIES  287 (295)
Q Consensus       238 ~~~-----~~---------~~--~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeDl~~ae~  287 (295)
                      ..+     +.         ++  .++++..+.  .++..-.+..+++.. ++..-|.+..||.....
T Consensus       231 ~~~~~~~~lp~h~~~K~v~p~~~~~qlE~~i~--da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~s  295 (300)
T cd00897         231 VVEENALDLEIIVNPKTVDGGLNVIQLETAVG--AAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRS  295 (300)
T ss_pred             HHHhccCCCCeeecccccCCCCCEEEeHhHhh--hHHHhCCCcEEEEEChhhcCCCCChHHHHhhhh
Confidence            321     11         00  011111111  122221233444443 56889999999976543

UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=97.75  E-value=0.0014  Score=62.62  Aligned_cols=232  Identities=12%  Similarity=0.080  Sum_probs=120.3

Q ss_pred             CCceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhCC---CCC-eEEEECC---chHHHHHHHHcC---Ce
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFG---AD  112 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~~---~i~-~IvVv~~---~~~i~~~~~~~~---~~  112 (295)
                      ..++.+|+||||.|||||   ||-++++ .|+++++..++++....   +++ ..++.++   +++..+++++++   ..
T Consensus        77 L~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~  156 (469)
T PLN02474         77 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIE  156 (469)
T ss_pred             HhcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccc
Confidence            467899999999999998   8999998 67999998888875321   222 4566665   466677776653   22


Q ss_pred             E--EeCC---------------C-------CCCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHH-HH
Q 022555          113 V--IMTS---------------E-------SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDG-VV  160 (295)
Q Consensus       113 v--~~~~---------------~-------~~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~-li  160 (295)
                      +  +.+.               .       +.+.|...++.+|...       ...-+++++.+.|+ +.  ..++- ++
T Consensus       157 i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lg--a~vDp~~l  233 (469)
T PLN02474        157 IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LG--AIVDLKIL  233 (469)
T ss_pred             eEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cc--cccCHHHH
Confidence            2  1110               0       2333444566655432       12357899999998 43  22222 22


Q ss_pred             HHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCC-CCCCCCCCCCCceEEEeEEEecHHHHhhcc
Q 022555          161 KALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY-NKSGKVNPQFPYLLHLGIQSYDSNFLKIYP  239 (295)
Q Consensus       161 ~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~-~r~~~~~~~~p~~~~~Giyif~~~~l~~~~  239 (295)
                      ..+.++ ++.+++-+++-+..+    ...+++...+|+..-..-..+|. ..+.......=.++|++...|+-++|.+..
T Consensus       234 g~~~~~-~~e~~~ev~~Kt~~d----~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~  308 (469)
T PLN02474        234 NHLIQN-KNEYCMEVTPKTLAD----VKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV  308 (469)
T ss_pred             HHHHhc-CCceEEEEeecCCCC----CCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence            233322 333343333221111    12344444566643222221221 111111111124778999999999987642


Q ss_pred             c---CC------CCCC-----cccc-hhhhhhhhhCCceEEEEEec-CCcCCCCCHHHHHHHHHH
Q 022555          240 G---LH------PTPL-----QLEE-DLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIESF  288 (295)
Q Consensus       240 ~---~~------~~~~-----~~~d-~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeDl~~ae~l  288 (295)
                      +   +.      +...     ++-| .+.  .++..=.+..+++.. .++.-|.+.+|+..+.+-
T Consensus       309 ~~~~l~~~~I~n~k~~~g~kv~q~Et~ig--~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsd  371 (469)
T PLN02474        309 EADALKMEIIPNPKEVDGVKVLQLETAAG--AAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSD  371 (469)
T ss_pred             hcCCCCceeecCCCCCCCeeEEEeHHHHH--HHHHhCCCceEEEEchhhccCCCCCCCHHHHHHH
Confidence            1   10      1110     0101 010  112211123334433 568889999999888753

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase

Probab=97.64  E-value=0.00096  Score=64.12  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=67.5

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC-------------CCC-eEEEECC---chHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLD-HLVVATD---DEKIAE  104 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~-------------~i~-~IvVv~~---~~~i~~  104 (295)
                      .++.+|+||||.|||||   ||-+.+|   .++++++..++++....             .+. .++|.|+   ++...+
T Consensus       115 gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~  194 (493)
T PLN02435        115 GKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRK  194 (493)
T ss_pred             CCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHH
Confidence            57889999999999998   7988876   58999999999874311             111 4577776   466667


Q ss_pred             HHHHc---C-----CeEEeCC-------------------CCCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCccc
Q 022555          105 CCQQF---G-----ADVIMTS-------------------ESCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPL  150 (295)
Q Consensus       105 ~~~~~---~-----~~v~~~~-------------------~~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pl  150 (295)
                      +++++   |     +.++.+.                   ...+.|...++.+|..-+       ..-.++.+...|+++
T Consensus       195 ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L  274 (493)
T PLN02435        195 FFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL  274 (493)
T ss_pred             HHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence            77643   2     1112110                   123345556777765421       235789999999976


Q ss_pred             C
Q 022555          151 I  151 (295)
Q Consensus       151 i  151 (295)
                      .
T Consensus       275 ~  275 (493)
T PLN02435        275 V  275 (493)
T ss_pred             c
Confidence            4

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose

Probab=97.40  E-value=0.00095  Score=60.72  Aligned_cols=103  Identities=15%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             EEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhCC-------C-CCeEEEECC---chHHHHHHHHcC---
Q 022555           51 VGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------T-LDHLVVATD---DEKIAECCQQFG---  110 (295)
Q Consensus        51 ~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~~-------~-i~~IvVv~~---~~~i~~~~~~~~---  110 (295)
                      .+|+||||.|+|||   ||-++++   .|+++++..+++++...       . .-.++|.|+   +++..+++++++   
T Consensus         2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG   81 (315)
T cd06424           2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG   81 (315)
T ss_pred             EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence            57999999999998   8999998   68999999999886531       1 125677776   466667776432   


Q ss_pred             C---eE--E-------eC------------C---CCCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCcccCCH
Q 022555          111 A---DV--I-------MT------------S---ESCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPLIEP  153 (295)
Q Consensus       111 ~---~v--~-------~~------------~---~~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pli~~  153 (295)
                      .   .+  +       +.            +   ...++|...++.+|..-+       ..-+++.+...|.++...
T Consensus        82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~  158 (315)
T cd06424          82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFK  158 (315)
T ss_pred             CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhc
Confidence            1   11  1       00            0   012345556777765431       235789999999988753

UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f

>PLN02830 UDP-sugar pyrophosphorylase

Probab=97.19  E-value=0.0084  Score=59.37  Aligned_cols=117  Identities=15%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhC-------C---CC-CeEEEECC---chHHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLA-------T---TL-DHLVVATD---DEKIAECCQ  107 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~-------~---~i-~~IvVv~~---~~~i~~~~~  107 (295)
                      .++.+|+||||.|+|||   ||-++|+   .|+++++..+++++..       .   .+ -.++|.|+   +++..++++
T Consensus       127 ~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~  206 (615)
T PLN02830        127 GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE  206 (615)
T ss_pred             CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence            57889999999999998   8999986   5899999999988653       0   11 24677776   466667776


Q ss_pred             HcCC------eE--Ee--------CC----------C----CCCCcHHHHHHHHHHcc-------ccCCEEEEEeCCccc
Q 022555          108 QFGA------DV--IM--------TS----------E----SCRNGTERCNEALQKLE-------KKYDIVVNIQGDEPL  150 (295)
Q Consensus       108 ~~~~------~v--~~--------~~----------~----~~~g~~~~i~~al~~~~-------~~~d~vlv~~~D~Pl  150 (295)
                      +++.      .+  +.        .+          .    ..++|...++.+|..-+       ..-.++.+...|+|+
T Consensus       207 ~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L  286 (615)
T PLN02830        207 RNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGL  286 (615)
T ss_pred             HCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchh
Confidence            5321      11  11        01          0    12334445666664321       235789999999988


Q ss_pred             CCHHHHHHHHHHHHh
Q 022555          151 IEPEIIDGVVKALQA  165 (295)
Q Consensus       151 i~~~~i~~li~~~~~  165 (295)
                      +...+ -.++-.+..
T Consensus       287 ~~~Ad-p~flG~~~~  300 (615)
T PLN02830        287 VFKAI-PAALGVSAT  300 (615)
T ss_pred             hhccc-HHHhHHHHh
Confidence            76554 344444433

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2

Probab=97.11  E-value=0.015  Score=55.32  Aligned_cols=185  Identities=15%  Similarity=0.078  Sum_probs=96.4

Q ss_pred             CCceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhh----CCCCCeEEEECC---chHHHHHHHHcC---Ce
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKL----ATTLDHLVVATD---DEKIAECCQQFG---AD  112 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~----~~~i~~IvVv~~---~~~i~~~~~~~~---~~  112 (295)
                      ..++.+|+||||.|||||   ||-+.++ .|+++++..++++..    .+.--.++|.++   +++..+++++|.   .+
T Consensus        54 ~~kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~  133 (420)
T PF01704_consen   54 LGKVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVD  133 (420)
T ss_dssp             TTCEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCC
T ss_pred             hCCEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcc
Confidence            457889999999999997   8999999 678899988887764    211124666664   466777776541   12


Q ss_pred             E--E--------eCC-------CC---------CCCcHHHHHHHHHHc-------cccCCEEEEEeCCcccCCHHHHHHH
Q 022555          113 V--I--------MTS-------ES---------CRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEIIDGV  159 (295)
Q Consensus       113 v--~--------~~~-------~~---------~~g~~~~i~~al~~~-------~~~~d~vlv~~~D~Pli~~~~i~~l  159 (295)
                      +  +        ..+       +.         .+.|...++.+|..-       ...-+++.+.+.|+ +...-+. .+
T Consensus       134 v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp-~~  211 (420)
T PF01704_consen  134 VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP-VF  211 (420)
T ss_dssp             EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H-HH
T ss_pred             eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH-HH
Confidence            1  1        000       00         022444566665432       12357999999999 6533222 23


Q ss_pred             HHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCCC-CCCCCCCCCCceEEEeEEEecHHHHhhc
Q 022555          160 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-KSGKVNPQFPYLLHLGIQSYDSNFLKIY  238 (295)
Q Consensus       160 i~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~~-r~~~~~~~~p~~~~~Giyif~~~~l~~~  238 (295)
                      +..+.++ ++.++.-+++-+..  .  ..++++...+|+..-.....+|.. .+.......-..+|+|--.|+-.+|...
T Consensus       212 lG~~~~~-~~~~~~evv~Kt~~--d--ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~  286 (420)
T PF01704_consen  212 LGYMIEK-NADFGMEVVPKTSP--D--EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL  286 (420)
T ss_dssp             HHHHHHT-T-SEEEEEEE-CST--T--TSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred             HHHHHhc-cchhheeeeecCCC--C--CceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence            3333332 22233333332210  1  124444444676543322223211 0001111223567887668898888753

7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=96.50  E-value=0.063  Score=45.90  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=60.7

Q ss_pred             chHHHHHHHHhhCCCCC---eEEEECC--chHHHHHHHHcCC----eEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555           75 PMIQRTWERSKLATTLD---HLVVATD--DEKIAECCQQFGA----DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i~---~IvVv~~--~~~i~~~~~~~~~----~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~  145 (295)
                      .+++.+++.+.+...-+   +|+|+.+  .+...++++++..    .++..+....+....+..|++..  ..|++++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~a--~~d~i~~lD   92 (234)
T cd06421          15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNALAHT--TGDFVAILD   92 (234)
T ss_pred             HHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHHHhC--CCCEEEEEc
Confidence            36788888887654333   6777765  3455555554433    44444322222233467788776  478999999


Q ss_pred             CCcccCCHHHHHHHHHHHHhCCCc
Q 022555          146 GDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      +|. .++++.++.+++.+.++++.
T Consensus        93 ~D~-~~~~~~l~~l~~~~~~~~~~  115 (234)
T cd06421          93 ADH-VPTPDFLRRTLGYFLDDPKV  115 (234)
T ss_pred             ccc-CcCccHHHHHHHHHhcCCCe
Confidence            998 67899999999998764443

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=96.31  E-value=0.11  Score=40.25  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=56.1

Q ss_pred             cchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcC-----CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555           74 KPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (295)
Q Consensus        74 kpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~-----~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~  145 (295)
                      .+++.++++++.+.. ...+++|+.+  .++..+...+..     ...+.. ....+....+..++...  ..|.+++++
T Consensus         9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~--~~d~v~~~d   85 (156)
T cd00761           9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVIN-EENQGLAAARNAGLKAA--RGEYILFLD   85 (156)
T ss_pred             HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEe-cCCCChHHHHHHHHHHh--cCCEEEEEC
Confidence            689999999998764 2457887776  233333333221     222222 22223344566777776  478999999


Q ss_pred             CCcccCCHHHHHHHHHHHHhCCCc
Q 022555          146 GDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      +|..+ .+..+..++..+..+++.
T Consensus        86 ~D~~~-~~~~~~~~~~~~~~~~~~  108 (156)
T cd00761          86 ADDLL-LPDWLERLVAELLADPEA  108 (156)
T ss_pred             CCCcc-CccHHHHHHHHHhcCCCc
Confidence            99965 667777775555444343

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=96.29  E-value=0.1  Score=45.16  Aligned_cols=90  Identities=24%  Similarity=0.335  Sum_probs=63.7

Q ss_pred             CCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcc
Q 022555           72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP  149 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~P  149 (295)
                      ++...|..+++.+...  .++|+|+-+  .+...+++++++++++..  ...|-......|+...  ..|+++++++|. 
T Consensus        10 Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~~~~~v~~~--~~~g~~~~~n~~~~~a--~~d~vl~lDaD~-   82 (229)
T cd02511          10 NEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKEYGAKVYQR--WWDGFGAQRNFALELA--TNDWVLSLDADE-   82 (229)
T ss_pred             CcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHHcCCEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEeCCc-
Confidence            4456778888888643  478888775  345567777788887655  2223333455677766  368999999999 


Q ss_pred             cCCHHHHHHHHHHHHhCCC
Q 022555          150 LIEPEIIDGVVKALQAAPD  168 (295)
Q Consensus       150 li~~~~i~~li~~~~~~~d  168 (295)
                      .++++.++.+.+.+.+.+.
T Consensus        83 ~~~~~~~~~l~~~~~~~~~  101 (229)
T cd02511          83 RLTPELADEILALLATDDY  101 (229)
T ss_pred             CcCHHHHHHHHHHHhCCCC
Confidence            6789999999988876544

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=96.21  E-value=0.14  Score=42.36  Aligned_cols=97  Identities=21%  Similarity=0.286  Sum_probs=63.0

Q ss_pred             CCcchHHHHHHHHhhCCC---CCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCc-HHHHHHHHHHcc---ccCCEEE
Q 022555           72 LGKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLE---KKYDIVV  142 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~-~~~i~~al~~~~---~~~d~vl  142 (295)
                      +....|..+++++.+...   ..+|+|+.+  .+...+++++++..++........+ ..++..++....   ...|.++
T Consensus         7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~   86 (183)
T cd06438           7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVV   86 (183)
T ss_pred             chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence            445678888888875432   135777764  3555666766766665433222233 334556666542   2478999


Q ss_pred             EEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      ++++|. .++++.+..+++.+.++.+.
T Consensus        87 ~~DaD~-~~~p~~l~~l~~~~~~~~~~  112 (183)
T cd06438          87 VFDADN-LVDPNALEELNARFAAGARV  112 (183)
T ss_pred             EEcCCC-CCChhHHHHHHHHHhhCCCe
Confidence            999999 66899999999998765554

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.13  E-value=0.039  Score=43.91  Aligned_cols=93  Identities=17%  Similarity=0.295  Sum_probs=60.6

Q ss_pred             CCcchHHHHHHHHhhC-CCCCeEEEECCc--hHHHHHHHHc-----CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           72 LGKPMIQRTWERSKLA-TTLDHLVVATDD--EKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~-~~i~~IvVv~~~--~~i~~~~~~~-----~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      +....|..+++.+.+. ....+|+|+-+.  ++..++++++     ++.++..++.. |....+..|++...  .+++++
T Consensus         8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~a~--~~~i~~   84 (169)
T PF00535_consen    8 NEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKHAK--GEYILF   84 (169)
T ss_dssp             S-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH----SSEEEE
T ss_pred             CCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-cccccccccccccc--eeEEEE
Confidence            3446788888888765 234577777652  3555555543     45556554432 33455677888874  579999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHhCCC
Q 022555          144 IQGDEPLIEPEIIDGVVKALQAAPD  168 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d  168 (295)
                      ++.|. .+++..++.+++.+.+.+.
T Consensus        85 ld~D~-~~~~~~l~~l~~~~~~~~~  108 (169)
T PF00535_consen   85 LDDDD-IISPDWLEELVEALEKNPP  108 (169)
T ss_dssp             EETTE-EE-TTHHHHHHHHHHHCTT
T ss_pred             eCCCc-eEcHHHHHHHHHHHHhCCC
Confidence            99999 5667799999999988433

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=96.09  E-value=0.14  Score=47.10  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHH----HHHHcCCeEE-eCCCC
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAE----CCQQFGADVI-MTSES  119 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~----~~~~~~~~v~-~~~~~  119 (295)
                      ++++.+|||+--...++          ..+++.+.+.+.+.+.--+|+|+-+  .+...+    +.++.+..+. .....
T Consensus         5 ~~~vSVVIP~yNE~~~i----------~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~   74 (325)
T PRK10714          5 IKKVSVVIPVYNEQESL----------PELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNR   74 (325)
T ss_pred             CCeEEEEEcccCchhhH----------HHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCC
Confidence            45578888876555544          2455555555544432236777664  222222    2333344432 11112


Q ss_pred             CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          120 CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       120 ~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      -.|-..++..|+...  ..|.++++++|.- .+++.+.++++.+.++.|.+
T Consensus        75 n~G~~~A~~~G~~~A--~gd~vv~~DaD~q-~~p~~i~~l~~~~~~~~DvV  122 (325)
T PRK10714         75 NYGQHSAIMAGFSHV--TGDLIITLDADLQ-NPPEEIPRLVAKADEGYDVV  122 (325)
T ss_pred             CCCHHHHHHHHHHhC--CCCEEEEECCCCC-CCHHHHHHHHHHHHhhCCEE
Confidence            224345677888876  4789999999994 68999999999987655543

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=95.99  E-value=0.18  Score=43.69  Aligned_cols=101  Identities=23%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHHHc---CCeEEeCCC
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQF---GADVIMTSE  118 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~~~---~~~v~~~~~  118 (295)
                      ++++.+||++-+..              ..|..+++.+.+...-   -+|+|+.+  .+...+.++++   ++.++..+.
T Consensus        28 ~~~isVvip~~n~~--------------~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~   93 (251)
T cd06439          28 LPTVTIIIPAYNEE--------------AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPE   93 (251)
T ss_pred             CCEEEEEEecCCcH--------------HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCC
Confidence            45677777765443              3445666665443222   26777765  33444445443   244554432


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                       ..|...++..+++...  .|+++++++|. ..+++.+.++++.+.+
T Consensus        94 -~~g~~~a~n~gi~~a~--~d~i~~lD~D~-~~~~~~l~~l~~~~~~  136 (251)
T cd06439          94 -RRGKAAALNRALALAT--GEIVVFTDANA-LLDPDALRLLVRHFAD  136 (251)
T ss_pred             -CCChHHHHHHHHHHcC--CCEEEEEcccc-CcCHHHHHHHHHHhcC
Confidence             2344455677887763  69999999999 4579999999998864

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=95.97  E-value=0.13  Score=53.04  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             hHHHHHHHHhhCCCC-C--eEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCccc
Q 022555           76 MIQRTWERSKLATTL-D--HLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL  150 (295)
Q Consensus        76 Ll~~~l~~l~~~~~i-~--~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pl  150 (295)
                      ++..++..+.+...- +  +|+|+-|  .++..+++++.++.++.+++...+-...+-+|++..  +.|.++++++|. .
T Consensus       275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL~~a--~GEyIavlDAD~-i  351 (852)
T PRK11498        275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNALKYA--KGEFVAIFDCDH-V  351 (852)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHHHhC--CCCEEEEECCCC-C
Confidence            567777776644322 2  5777765  577888888888887766543322234577888877  479999999999 5


Q ss_pred             CCHHHHHHHHHHHHhCCCc
Q 022555          151 IEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       151 i~~~~i~~li~~~~~~~d~  169 (295)
                      .+++.+++++..+.++++.
T Consensus       352 p~pdfL~~~V~~f~~dP~V  370 (852)
T PRK11498        352 PTRSFLQMTMGWFLKDKKL  370 (852)
T ss_pred             CChHHHHHHHHHHHhCCCe
Confidence            7889999999887666554

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=95.83  E-value=0.17  Score=51.53  Aligned_cols=91  Identities=16%  Similarity=0.297  Sum_probs=63.6

Q ss_pred             hHHHHHHHHhhCCCC-C--eEEEECCc--------------------hHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHH
Q 022555           76 MIQRTWERSKLATTL-D--HLVVATDD--------------------EKIAECCQQFGADVIMTSESCRNGTERCNEALQ  132 (295)
Q Consensus        76 Ll~~~l~~l~~~~~i-~--~IvVv~~~--------------------~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~  132 (295)
                      +++.+++.+.+...- +  +|+|+-+.                    +++++++++.++.++.+++...+-...+.+|++
T Consensus       146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~  225 (713)
T TIGR03030       146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHAKAGNINNALK  225 (713)
T ss_pred             HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCCChHHHHHHHH
Confidence            567788887654332 2  67776542                    245566777788877665443233445778888


Q ss_pred             HccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       133 ~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      ..  +.|.++++++|+ ..+++.+++++..+.++++.
T Consensus       226 ~a--~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~v  259 (713)
T TIGR03030       226 HT--DGELILIFDADH-VPTRDFLQRTVGWFVEDPKL  259 (713)
T ss_pred             hc--CCCEEEEECCCC-CcChhHHHHHHHHHHhCCCE
Confidence            77  468999999999 56899999999988766554

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=95.80  E-value=0.2  Score=41.73  Aligned_cols=92  Identities=18%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             hHHHHHHHHhhCCC-CCeEEEECC---chHHHH----HHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCC
Q 022555           76 MIQRTWERSKLATT-LDHLVVATD---DEKIAE----CCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGD  147 (295)
Q Consensus        76 Ll~~~l~~l~~~~~-i~~IvVv~~---~~~i~~----~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D  147 (295)
                      .|..+++.+.+... -.+|+|+.+   ++...+    +.+++++.++..+.. .|...+...|+...  ..+.++++++|
T Consensus        14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a--~gd~i~~lD~D   90 (201)
T cd04195          14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-RGLGKALNEGLKHC--TYDWVARMDTD   90 (201)
T ss_pred             HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-ccHHHHHHHHHHhc--CCCEEEEeCCc
Confidence            78899998876432 246666644   233333    333445555544332 34445567777766  47899999999


Q ss_pred             cccCCHHHHHHHHHHHHhCCCcEE
Q 022555          148 EPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       148 ~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      . ...+..++.+++.+.++++..+
T Consensus        91 d-~~~~~~l~~~~~~~~~~~~~~~  113 (201)
T cd04195          91 D-ISLPDRFEKQLDFIEKNPEIDI  113 (201)
T ss_pred             c-ccCcHHHHHHHHHHHhCCCeEE
Confidence            9 6789999999999876655443

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=95.74  E-value=0.011  Score=56.02  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhh
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL   86 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~   86 (295)
                      ..++.+|+||||.|+|||   ||.+.++. |+++++.+++.++.
T Consensus       103 ~~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~  146 (472)
T COG4284         103 LGKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKY  146 (472)
T ss_pred             cCceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHH
Confidence            457889999999999997   89999997 99999999988763

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=95.69  E-value=0.12  Score=40.58  Aligned_cols=89  Identities=25%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             HHHHHhhCCCCCeEEEECCch---HHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHH
Q 022555           80 TWERSKLATTLDHLVVATDDE---KIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII  156 (295)
Q Consensus        80 ~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i  156 (295)
                      |++++.+....+.++..++..   .........++.+..+.  ..+-..++.+|++......+.++++.+|.|.++++.|
T Consensus         1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~--g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l   78 (122)
T PF09837_consen    1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQ--GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDL   78 (122)
T ss_dssp             -------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHH
T ss_pred             CccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecC--CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Confidence            456666665454444444422   11111223456665432  1122357888888774456799999999999999999


Q ss_pred             HHHHHHHHhCCCcEE
Q 022555          157 DGVVKALQAAPDAVF  171 (295)
Q Consensus       157 ~~li~~~~~~~d~~v  171 (295)
                      ++..+.+... +.++
T Consensus        79 ~~A~~~L~~~-d~Vl   92 (122)
T PF09837_consen   79 EQAFEALQRH-DVVL   92 (122)
T ss_dssp             HHHHHHTTT--SEEE
T ss_pred             HHHHHHhccC-CEEE
Confidence            9999988754 5544

; PDB: 3CGX_A.

>PRK11204 N-glycosyltransferase; Provisional

Probab=95.24  E-value=0.77  Score=43.42  Aligned_cols=91  Identities=18%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             chHHHHHHHHhhCCCC-CeEEEECC--chHHHH----HHHHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555           75 PMIQRTWERSKLATTL-DHLVVATD--DEKIAE----CCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG  146 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i-~~IvVv~~--~~~i~~----~~~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~  146 (295)
                      ..+..+++.+.+...- .+|+|+.+  .++..+    +.+++. +.++..++ ..|-..++..|++..  ..|.++++++
T Consensus        67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~-n~Gka~aln~g~~~a--~~d~i~~lDa  143 (420)
T PRK11204         67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAE-NQGKANALNTGAAAA--RSEYLVCIDG  143 (420)
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCC-CCCHHHHHHHHHHHc--CCCEEEEECC
Confidence            4567888877654322 36777765  233333    333333 44444332 234445677777776  4799999999


Q ss_pred             CcccCCHHHHHHHHHHHHhCCCc
Q 022555          147 DEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       147 D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      |. .++++.++++++.+.++++.
T Consensus       144 D~-~~~~d~L~~l~~~~~~~~~v  165 (420)
T PRK11204        144 DA-LLDPDAAAYMVEHFLHNPRV  165 (420)
T ss_pred             CC-CCChhHHHHHHHHHHhCCCe
Confidence            99 67899999999999765543

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=95.17  E-value=0.45  Score=43.37  Aligned_cols=109  Identities=20%  Similarity=0.238  Sum_probs=66.7

Q ss_pred             CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhC---CCCCeEEEECC--chHHHHHHHHcCCeEEeCC---
Q 022555           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLA---TTLDHLVVATD--DEKIAECCQQFGADVIMTS---  117 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~---~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~---  117 (295)
                      ..+++.+||+|-....              .|..+++.+.+.   +...+|+|+-+  .+...+++++++..++...   
T Consensus        29 ~~~~vSVVIPayNee~--------------~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~   94 (306)
T PRK13915         29 AGRTVSVVLPALNEEE--------------TVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEIL   94 (306)
T ss_pred             CCCCEEEEEecCCcHH--------------HHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh
Confidence            3467889999864433              334555555432   23457887764  3455566666655432211   


Q ss_pred             ---CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          118 ---ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       118 ---~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                         ....|-..++..++...  ..|.++++++|.-..+++.+.++++.+..+++..
T Consensus        95 ~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~  148 (306)
T PRK13915         95 PELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVH  148 (306)
T ss_pred             hccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCce
Confidence               11123334566777765  4689999999984468999999999886444443

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=95.02  E-value=0.48  Score=37.60  Aligned_cols=94  Identities=15%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             CCcchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcC--CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555           72 LGKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFG--ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG  146 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~--~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~  146 (295)
                      +...++..+++.+.+.. ...+|+|+.+  .+...+.+++..  +.++..+ ...|...+...+++..  +.++++++++
T Consensus         7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~~--~~~~i~~~D~   83 (166)
T cd04186           7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG-ENLGFGAGNNQGIREA--KGDYVLLLNP   83 (166)
T ss_pred             CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecC-CCcChHHHhhHHHhhC--CCCEEEEECC
Confidence            44578899999987653 2346777665  233344444433  4444332 2234445567778777  5789999999


Q ss_pred             CcccCCHHHHHHHHHHHHhCCCc
Q 022555          147 DEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       147 D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      |. .+++..+..+++.+.++++.
T Consensus        84 D~-~~~~~~l~~~~~~~~~~~~~  105 (166)
T cd04186          84 DT-VVEPGALLELLDAAEQDPDV  105 (166)
T ss_pred             Cc-EECccHHHHHHHHHHhCCCc
Confidence            99 56788999999887765544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=94.88  E-value=0.96  Score=39.27  Aligned_cols=110  Identities=11%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHH----HHcC-CeEE-
Q 022555           43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC----QQFG-ADVI-  114 (295)
Q Consensus        43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~----~~~~-~~v~-  114 (295)
                      ++..++++.+|||+-.....++          .+++...+.+...+ --+|+|+-+  .+...+++    ++++ ..+. 
T Consensus         4 ~~~~~~~vsVvIp~yne~~~l~----------~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~   72 (243)
T PLN02726          4 PGEGAMKYSIIVPTYNERLNIA----------LIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILL   72 (243)
T ss_pred             CCCCCceEEEEEccCCchhhHH----------HHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEE
Confidence            4555678889999765544431          22222222222221 226777654  23223333    3333 2222 


Q ss_pred             eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       115 ~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      .....-.|...++..|+...  ..++++++++|.. .+++.+..+++.+.++
T Consensus        73 ~~~~~n~G~~~a~n~g~~~a--~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~  121 (243)
T PLN02726         73 RPRPGKLGLGTAYIHGLKHA--SGDFVVIMDADLS-HHPKYLPSFIKKQRET  121 (243)
T ss_pred             EecCCCCCHHHHHHHHHHHc--CCCEEEEEcCCCC-CCHHHHHHHHHHHHhc
Confidence            22112223344566777776  4689999999995 6899999999987653

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=94.87  E-value=0.63  Score=43.68  Aligned_cols=106  Identities=14%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC--CCeEEEECC--chHHHHHH----HHc----CCeEE
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT--LDHLVVATD--DEKIAECC----QQF----GADVI  114 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~--i~~IvVv~~--~~~i~~~~----~~~----~~~v~  114 (295)
                      .+++.+||+|.+.              ...|..+++.+.+...  .-+|+||-+  .+...+++    +++    .+.++
T Consensus        39 ~p~VSVIIpa~Ne--------------~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi  104 (384)
T TIGR03469        39 WPAVVAVVPARNE--------------ADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV  104 (384)
T ss_pred             CCCEEEEEecCCc--------------HhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence            4567777777644              3456777887765422  236777765  23333333    233    23433


Q ss_pred             eCCC---CCCCcHHHHHHHHHHccc---cCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 022555          115 MTSE---SCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  167 (295)
Q Consensus       115 ~~~~---~~~g~~~~i~~al~~~~~---~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~  167 (295)
                      ..++   ...|-..++..|++....   +.|.++++++|. ..+++.++++++.+.+++
T Consensus       105 ~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~  162 (384)
T TIGR03469       105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEG  162 (384)
T ss_pred             cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC
Confidence            3211   111223346667766531   168999999999 578999999999887643

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=94.64  E-value=0.66  Score=36.63  Aligned_cols=95  Identities=21%  Similarity=0.299  Sum_probs=57.0

Q ss_pred             CCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHcC----C-eEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----A-DVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~~----~-~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      +....|..+++.+.+... -.+|+|+-+  .+...+.+.++.    . .++.......|-..+...+++..  ..+.+++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~   84 (180)
T cd06423           7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVV   84 (180)
T ss_pred             ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEE
Confidence            334678888888876431 346777654  222333333321    1 12222222233344566778776  4789999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          144 IQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      +++|. .+.+..+..++..+.++++.
T Consensus        85 ~D~D~-~~~~~~l~~~~~~~~~~~~~  109 (180)
T cd06423          85 LDADT-ILEPDALKRLVVPFFADPKV  109 (180)
T ss_pred             ECCCC-CcChHHHHHHHHHhccCCCe
Confidence            99999 66899999997766655443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=94.58  E-value=0.73  Score=39.47  Aligned_cols=88  Identities=19%  Similarity=0.318  Sum_probs=57.3

Q ss_pred             hHHHHHHHHhhCCC-CCeEEEECC---ch----HHHHHHHHcCCe--EEeCCCCCCCc-HHHHHHHHHHccccCCEEEEE
Q 022555           76 MIQRTWERSKLATT-LDHLVVATD---DE----KIAECCQQFGAD--VIMTSESCRNG-TERCNEALQKLEKKYDIVVNI  144 (295)
Q Consensus        76 Ll~~~l~~l~~~~~-i~~IvVv~~---~~----~i~~~~~~~~~~--v~~~~~~~~g~-~~~i~~al~~~~~~~d~vlv~  144 (295)
                      +|..+++.+.+... -.+|+|+-+   ++    .+++++++++.+  ++... ...|. ..++..|++....+.|.++++
T Consensus        13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~~G~~~~a~n~g~~~a~~~~d~i~~l   91 (236)
T cd06435          13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PLPGAKAGALNYALERTAPDAEIIAVI   91 (236)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CCCCCchHHHHHHHHhcCCCCCEEEEE
Confidence            78899999876532 236777664   22    223555554433  33332 22343 455677777764336899999


Q ss_pred             eCCcccCCHHHHHHHHHHHHh
Q 022555          145 QGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       145 ~~D~Pli~~~~i~~li~~~~~  165 (295)
                      ++|. .++++.|.+++..+.+
T Consensus        92 D~D~-~~~~~~l~~l~~~~~~  111 (236)
T cd06435          92 DADY-QVEPDWLKRLVPIFDD  111 (236)
T ss_pred             cCCC-CcCHHHHHHHHHHhcC
Confidence            9998 7899999999988753

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=94.45  E-value=0.59  Score=39.92  Aligned_cols=84  Identities=19%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             chHHHHHHHHhhCCCCCeEEEECC--chHHHHHH---HHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCc
Q 022555           75 PMIQRTWERSKLATTLDHLVVATD--DEKIAECC---QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE  148 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~---~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~  148 (295)
                      +.|..+++.+.+.. ..+|+|+.+  .+.....+   .... +.++. . ...|-..++..|+...  ..|.++++++|.
T Consensus        14 ~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~-~-~~~g~~~a~n~g~~~a--~~d~v~~lD~D~   88 (235)
T cd06434          14 DVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT-V-PHPGKRRALAEGIRHV--TTDIVVLLDSDT   88 (235)
T ss_pred             HHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe-c-CCCChHHHHHHHHHHh--CCCEEEEECCCc
Confidence            67888898887654 447777765  23333332   2222 22332 2 2234344566777776  479999999999


Q ss_pred             ccCCHHHHHHHHHHHH
Q 022555          149 PLIEPEIIDGVVKALQ  164 (295)
Q Consensus       149 Pli~~~~i~~li~~~~  164 (295)
                       .+++..++++++.+.
T Consensus        89 -~~~~~~l~~l~~~~~  103 (235)
T cd06434          89 -VWPPNALPEMLKPFE  103 (235)
T ss_pred             -eeChhHHHHHHHhcc
Confidence             678889999999887

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=94.39  E-value=1.3  Score=36.75  Aligned_cols=92  Identities=23%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             chHHHHHHHHhhCCCC-CeEEEECC---chHHHHHHHH-----cCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555           75 PMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQ-----FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i-~~IvVv~~---~~~i~~~~~~-----~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~  145 (295)
                      ..+..+++.+.+...- .+|+|+-+   ++....+.+.     ..+.++..+ ...|...++..|++..  ..|++++++
T Consensus        15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a--~~d~i~~ld   91 (202)
T cd04184          15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-ENGGISAATNSALELA--TGEFVALLD   91 (202)
T ss_pred             HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-cCCCHHHHHHHHHHhh--cCCEEEEEC
Confidence            6678888888654322 26666654   2233333322     123343332 2223344566777776  468999999


Q ss_pred             CCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          146 GDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      +|. .+++..++.+++.+.++++..
T Consensus        92 ~D~-~~~~~~l~~~~~~~~~~~~~~  115 (202)
T cd04184          92 HDD-ELAPHALYEVVKALNEHPDAD  115 (202)
T ss_pred             CCC-cCChHHHHHHHHHHHhCCCCC
Confidence            999 668999999999885444443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=94.37  E-value=0.91  Score=38.36  Aligned_cols=90  Identities=20%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHH----HHHHcC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555           72 LGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAE----CCQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVV  142 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~----~~~~~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vl  142 (295)
                      +....|..+++.+.+..  .-.+|+||-+  .+...+    +.++.. +.++... ...|-..++..|++...  .|.++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~-~n~G~~~a~n~g~~~a~--gd~i~   83 (224)
T cd06442           7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRP-GKRGLGSAYIEGFKAAR--GDVIV   83 (224)
T ss_pred             chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecC-CCCChHHHHHHHHHHcC--CCEEE
Confidence            44456788888887542  1346777664  232233    333333 3333332 22333455677888773  68999


Q ss_pred             EEeCCcccCCHHHHHHHHHHHHh
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      ++++|. ..+++.+..+++.+..
T Consensus        84 ~lD~D~-~~~~~~l~~l~~~~~~  105 (224)
T cd06442          84 VMDADL-SHPPEYIPELLEAQLE  105 (224)
T ss_pred             EEECCC-CCCHHHHHHHHHHHhc
Confidence            999998 4689999999998643

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=94.37  E-value=1.1  Score=41.79  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcC---CeEEeC
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG---ADVIMT  116 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~---~~v~~~  116 (295)
                      .+.++.|||+.+..              +.|..+++.+.+... --+|+|+.+  ++.    ++++.++++   +.++..
T Consensus        40 ~p~VSViiP~~nee--------------~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~  105 (373)
T TIGR03472        40 WPPVSVLKPLHGDE--------------PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVID  105 (373)
T ss_pred             CCCeEEEEECCCCC--------------hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEEC
Confidence            34578888877554              445677777754432 247777654  222    223333332   333443


Q ss_pred             CCCCCC---cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          117 SESCRN---GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       117 ~~~~~g---~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      ++. .|   ....+.++++..  ..|.++++++|. .++++.+++++..+.+
T Consensus       106 ~~~-~G~~~K~~~l~~~~~~a--~ge~i~~~DaD~-~~~p~~L~~lv~~~~~  153 (373)
T TIGR03472       106 ARR-HGPNRKVSNLINMLPHA--RHDILVIADSDI-SVGPDYLRQVVAPLAD  153 (373)
T ss_pred             CCC-CCCChHHHHHHHHHHhc--cCCEEEEECCCC-CcChhHHHHHHHHhcC
Confidence            322 22   223445555555  479999999998 6699999999988853

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=94.32  E-value=1.2  Score=39.77  Aligned_cols=72  Identities=15%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             HHHHHHHHcCCe-EEeCCCC--CCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHH---HHHhCCCcEEEEe
Q 022555          101 KIAECCQQFGAD-VIMTSES--CRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFSTA  174 (295)
Q Consensus       101 ~i~~~~~~~~~~-v~~~~~~--~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~---~~~~~~d~~v~v~  174 (295)
                      .+..++++.+.. ++..+..  .-+.+...-.|+...  ..|.++++++|+ +++++.++++++   .+.++++..+...
T Consensus        51 ~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p  127 (281)
T PF10111_consen   51 ELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP  127 (281)
T ss_pred             HHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence            445666666665 3333211  112233334555555  478999999999 789999999999   5555555555554


Q ss_pred             e
Q 022555          175 V  175 (295)
Q Consensus       175 ~  175 (295)
                      +
T Consensus       128 ~  128 (281)
T PF10111_consen  128 C  128 (281)
T ss_pred             e
Confidence            3

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=94.14  E-value=1.5  Score=35.86  Aligned_cols=46  Identities=17%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             CCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       121 ~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      .|...++..++....  .|+++++++|.. .+++.++.+++.+..+.+.
T Consensus        66 ~G~~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~~~  111 (181)
T cd04187          66 FGQQAALLAGLDHAR--GDAVITMDADLQ-DPPELIPEMLAKWEEGYDV  111 (181)
T ss_pred             CCcHHHHHHHHHhcC--CCEEEEEeCCCC-CCHHHHHHHHHHHhCCCcE
Confidence            344556777888773  689999999996 5889999999986554443

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=94.10  E-value=1.2  Score=36.29  Aligned_cols=88  Identities=22%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             cchHHHHHHHHhhCC---CCCeEEEECC--chHHHHHHHH----cC-CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           74 KPMIQRTWERSKLAT---TLDHLVVATD--DEKIAECCQQ----FG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        74 kpLl~~~l~~l~~~~---~i~~IvVv~~--~~~i~~~~~~----~~-~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      ...|..+++.+.+..   ...+|+|+-+  .+...+.++.    .. ..++..+ .-.|...+...+++...  .|++++
T Consensus         9 ~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-~n~G~~~a~n~g~~~a~--gd~i~~   85 (185)
T cd04179           9 EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAAR--GDIVVT   85 (185)
T ss_pred             HhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-CCCCccHHHHHHHHHhc--CCEEEE
Confidence            346677788777652   2567777765  2333333332    22 2233333 23344556677777763  589999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHh
Q 022555          144 IQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      +++|. .+++..++++++.+.+
T Consensus        86 lD~D~-~~~~~~l~~l~~~~~~  106 (185)
T cd04179          86 MDADL-QHPPEDIPKLLEKLLE  106 (185)
T ss_pred             EeCCC-CCCHHHHHHHHHHHhc
Confidence            99998 4589999999998554

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=93.78  E-value=0.95  Score=37.12  Aligned_cols=94  Identities=13%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             CCcchHHHHHHHHhhCCCC-CeEEEECC--chHHHHHHHHcCC--eEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555           72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG  146 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i-~~IvVv~~--~~~i~~~~~~~~~--~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~  146 (295)
                      ++...|..+++.+.+...- -+|+|+-+  .+...+.++++..  ..+... ...|...++..|++..  ..++++++++
T Consensus         8 n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~a--~~~~v~~ld~   84 (202)
T cd06433           8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISE-PDKGIYDAMNKGIALA--TGDIIGFLNS   84 (202)
T ss_pred             chHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEec-CCcCHHHHHHHHHHHc--CCCEEEEeCC
Confidence            4456888899888654321 25666643  2334444444322  223332 2224345567788776  4689999999


Q ss_pred             CcccCCHHHHHHHHHHHHhCCCc
Q 022555          147 DEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       147 D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      |. .+.++.+..+++.+...++.
T Consensus        85 D~-~~~~~~~~~~~~~~~~~~~~  106 (202)
T cd06433          85 DD-TLLPGALLAVVAAFAEHPEV  106 (202)
T ss_pred             Cc-ccCchHHHHHHHHHHhCCCc
Confidence            99 56677888888656544343

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.67  E-value=1.4  Score=37.11  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=54.4

Q ss_pred             CCcchHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHH---H-cC--CeEEeCCCCCCCc-HHHHHHHHHHccccCC
Q 022555           72 LGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQ---Q-FG--ADVIMTSESCRNG-TERCNEALQKLEKKYD  139 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~---~-~~--~~v~~~~~~~~g~-~~~i~~al~~~~~~~d  139 (295)
                      +....|..+++.+.....-   -+|+|+-+  .+...++++   . .+  +.++..+.....+ ..++..++...  ..|
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~--~~d   84 (229)
T cd04192           7 NEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA--KGD   84 (229)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHh--cCC
Confidence            3445788888888654322   36766664  222223222   2 12  3333322111122 33456677665  478


Q ss_pred             EEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          140 IVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       140 ~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      +++++++|. .+.+..++++++.+.++
T Consensus        85 ~i~~~D~D~-~~~~~~l~~l~~~~~~~  110 (229)
T cd04192          85 WIVTTDADC-VVPSNWLLTFVAFIQKE  110 (229)
T ss_pred             EEEEECCCc-ccCHHHHHHHHHHhhcC
Confidence            999999999 67899999999977654

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=93.64  E-value=1.4  Score=42.27  Aligned_cols=105  Identities=15%  Similarity=0.235  Sum_probs=65.4

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC-C--eEEEECC--chHHHHH----HHHc-CCeEEeC
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-D--HLVVATD--DEKIAEC----CQQF-GADVIMT  116 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i-~--~IvVv~~--~~~i~~~----~~~~-~~~v~~~  116 (295)
                      .+++.+|||+-.              ....|..+++.+.+...- +  +|+|+-+  .++..+.    .+++ ++.+...
T Consensus        48 ~P~vsVIIP~yN--------------e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~  113 (439)
T TIGR03111        48 LPDITIIIPVYN--------------SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM  113 (439)
T ss_pred             CCCEEEEEEeCC--------------ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe
Confidence            456777777643              345678888887654321 2  4666654  2333332    2232 3344333


Q ss_pred             CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      +.. .|...++-.|++..  ..|.++++++|. ..+++.++++++.+.++++.
T Consensus       114 ~~~-~Gka~AlN~gl~~s--~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~v  162 (439)
T TIGR03111       114 NSD-QGKAKALNAAIYNS--IGKYIIHIDSDG-KLHKDAIKNMVTRFENNPDI  162 (439)
T ss_pred             CCC-CCHHHHHHHHHHHc--cCCEEEEECCCC-CcChHHHHHHHHHHHhCCCe
Confidence            222 34445677788876  468999999999 56899999999999766554

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=93.59  E-value=2  Score=37.03  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             chHHHHHHHHhhCCCC---CeEEEECC--chHHHHHHHHcC----CeEEeCCCCC-CCcHHHHHHHHHHccccCCEEEEE
Q 022555           75 PMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG----ADVIMTSESC-RNGTERCNEALQKLEKKYDIVVNI  144 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i---~~IvVv~~--~~~i~~~~~~~~----~~v~~~~~~~-~g~~~~i~~al~~~~~~~d~vlv~  144 (295)
                      -.|..+++.+.+...-   -+|+||.+  .+...++++++.    .+++..+... .|...++..|++..  ..|.++++
T Consensus        14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i~~~   91 (241)
T cd06427          14 EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYVVIY   91 (241)
T ss_pred             HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEEEEE
Confidence            4567777777653211   14666543  334444444432    3443322222 23345677788876  46899999


Q ss_pred             eCCcccCCHHHHHHHHHHHHhC
Q 022555          145 QGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       145 ~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      ++|. .+++..+.++++.+.++
T Consensus        92 DaD~-~~~~~~l~~~~~~~~~~  112 (241)
T cd06427          92 DAED-APDPDQLKKAVAAFARL  112 (241)
T ss_pred             cCCC-CCChHHHHHHHHHHHhc
Confidence            9999 68899999999988754

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.57  E-value=1.9  Score=35.93  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCcchHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      +....|..+++.+.+... --+|+|+-+  .+.    ++++..+++..+ +...+.-.|....+..++...  ..+++++
T Consensus         8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g~~v~~   85 (214)
T cd04196           8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DGDYVFF   85 (214)
T ss_pred             CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CCCEEEE
Confidence            444577888888875431 126666654  222    233333333223 222222223344566677665  4789999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          144 IQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      +++|. .+.+..+..+++.+.+.+..
T Consensus        86 ld~Dd-~~~~~~l~~~~~~~~~~~~~  110 (214)
T cd04196          86 CDQDD-IWLPDKLERLLKAFLKDDKP  110 (214)
T ss_pred             ECCCc-ccChhHHHHHHHHHhcCCCc
Confidence            99998 56789999999985544333

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=93.53  E-value=1.2  Score=39.99  Aligned_cols=92  Identities=11%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             chHHHHHHHHhhCCC---CCeEEEECC--chHHHHHH-----HHc--CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555           75 PMIQRTWERSKLATT---LDHLVVATD--DEKIAECC-----QQF--GADVIMTSESCRNGTERCNEALQKLEKKYDIVV  142 (295)
Q Consensus        75 pLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~-----~~~--~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vl  142 (295)
                      ..|..+++.+.+...   ..+|+||-+  .+......     ...  .++++..+.. .|-..+.-.|++..  ..|+++
T Consensus        12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n-~G~~~a~N~g~~~A--~gd~i~   88 (299)
T cd02510          12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKR-EGLIRARIAGARAA--TGDVLV   88 (299)
T ss_pred             HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCC-CCHHHHHHHHHHHc--cCCEEE
Confidence            588888888864322   137888765  22222221     122  3555544322 23334556677766  468999


Q ss_pred             EEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      ++++|.- +++..++.+++.+.+++..+
T Consensus        89 fLD~D~~-~~~~wL~~ll~~l~~~~~~~  115 (299)
T cd02510          89 FLDSHCE-VNVGWLEPLLARIAENRKTV  115 (299)
T ss_pred             EEeCCcc-cCccHHHHHHHHHHhCCCeE
Confidence            9999994 58999999999988765543

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=93.50  E-value=1.2  Score=37.52  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             CCcchHHHHHHHHhhCC-----CCCeEEEECC--chHH----HHHHHHcCC--eEEeCCCCCCCcHHHHHHHHHHccccC
Q 022555           72 LGKPMIQRTWERSKLAT-----TLDHLVVATD--DEKI----AECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKY  138 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~-----~i~~IvVv~~--~~~i----~~~~~~~~~--~v~~~~~~~~g~~~~i~~al~~~~~~~  138 (295)
                      +....|..+++.+.+..     ...+|+|+-+  .+..    +++..+++.  .++.... -.|-..++..|++..  ..
T Consensus         7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~-n~G~~~a~~~g~~~a--~g   83 (211)
T cd04188           7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK-NRGKGGAVRAGMLAA--RG   83 (211)
T ss_pred             ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc-CCCcHHHHHHHHHHh--cC
Confidence            44455666676665431     1336777654  2222    233333443  3333322 234445677788877  36


Q ss_pred             CEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          139 DIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       139 d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      |+++++++|. ..+++.+.++++.+.++
T Consensus        84 d~i~~ld~D~-~~~~~~l~~l~~~~~~~  110 (211)
T cd04188          84 DYILFADADL-ATPFEELEKLEEALKTS  110 (211)
T ss_pred             CEEEEEeCCC-CCCHHHHHHHHHHHhcc
Confidence            8999999999 57899999999986543

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=93.39  E-value=1.4  Score=37.63  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=54.9

Q ss_pred             cchHHHHHHHHhhCCC---CCeEEEECC--chHHHHHHHHcC-----CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           74 KPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~---i~~IvVv~~--~~~i~~~~~~~~-----~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      .+.+..+++.+.+...   .-+|+|+-+  .++..+.++.+.     +.++..+  ..+...+...|++..  ..|.+++
T Consensus        12 ~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~a~N~g~~~a--~~d~v~~   87 (249)
T cd02525          12 EKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIGIRNS--RGDIIIR   87 (249)
T ss_pred             hhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCCchHHHHHHHHHh--CCCEEEE
Confidence            4567888888865432   236777654  233333333221     3333332  223334566777776  4789999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHhC
Q 022555          144 IQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      +++|. .+++..++++++.+.+.
T Consensus        88 lD~D~-~~~~~~l~~~~~~~~~~  109 (249)
T cd02525          88 VDAHA-VYPKDYILELVEALKRT  109 (249)
T ss_pred             ECCCc-cCCHHHHHHHHHHHhcC
Confidence            99999 67999999999877653

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=93.34  E-value=3  Score=34.67  Aligned_cols=85  Identities=13%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             hHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHcC-C--eEEeCCCCCCCc---HHHHHHHHHHccccCCEEE
Q 022555           76 MIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFG-A--DVIMTSESCRNG---TERCNEALQKLEKKYDIVV  142 (295)
Q Consensus        76 Ll~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~~-~--~v~~~~~~~~g~---~~~i~~al~~~~~~~d~vl  142 (295)
                      -|..+++.+.+... --+|+||.+  .+.    ++++..++. .  .++..+.. .|.   ...+..|++..  ..|.++
T Consensus        15 ~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~g~~~a--~~d~i~   91 (196)
T cd02520          15 NLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVNNLIKGYEEA--RYDILV   91 (196)
T ss_pred             cHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHHHHHHHHHhC--CCCEEE
Confidence            45666766654321 136777664  222    223333332 2  33333222 122   12345677665  478999


Q ss_pred             EEeCCcccCCHHHHHHHHHHHH
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ++++|. .+++..+..+++.+.
T Consensus        92 ~~D~D~-~~~~~~l~~l~~~~~  112 (196)
T cd02520          92 ISDSDI-SVPPDYLRRMVAPLM  112 (196)
T ss_pred             EECCCc-eEChhHHHHHHHHhh
Confidence            999998 568999999998864

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=93.32  E-value=2.1  Score=36.19  Aligned_cols=99  Identities=18%  Similarity=0.193  Sum_probs=58.1

Q ss_pred             cCCcchHHHHHHHHhhCCCC--CeEEEECC--chH----HHHHHHHc---CCeEEeCCC---CCCCcHHHHHHHHHHccc
Q 022555           71 ILGKPMIQRTWERSKLATTL--DHLVVATD--DEK----IAECCQQF---GADVIMTSE---SCRNGTERCNEALQKLEK  136 (295)
Q Consensus        71 i~gkpLl~~~l~~l~~~~~i--~~IvVv~~--~~~----i~~~~~~~---~~~v~~~~~---~~~g~~~~i~~al~~~~~  136 (295)
                      .++...|..+++.+.+...-  -+|+|+-+  .+.    +.++..++   ++.++..+.   ...|...+.-.|++..  
T Consensus         6 yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a--   83 (219)
T cd06913           6 HNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS--   83 (219)
T ss_pred             cCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--
Confidence            35567888899888654222  27777764  222    22333222   334333221   1123333445666665  


Q ss_pred             cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (295)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~  172 (295)
                      ..|+++++++|. +..+..+.+++..+.++++.+++
T Consensus        84 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~  118 (219)
T cd06913          84 SGRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIG  118 (219)
T ss_pred             CCCEEEEECCCc-cCChhHHHHHHHHHHhCCCcEEE
Confidence            468999999998 56788898888887765554443

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]

Probab=93.22  E-value=0.064  Score=50.90  Aligned_cols=77  Identities=22%  Similarity=0.099  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCCCChhhhHHHHhhccchhcccCeeeeeCCCCCCCCceEEEEEcCCCCCCCC---CccccccC---CcchH
Q 022555            4 KSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFE---GKPLVNIL---GKPMI   77 (295)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl   77 (295)
                      +++|..+|-.-+ ++|++.+-.-     -.+.++.+.++.--...+..++++|||.|+|++   ||.+.+++   |+.++
T Consensus        58 ~~~~~~~p~p~~-~~~~~~~~~~-----~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf  131 (477)
T KOG2388|consen   58 KPVGEIRPVPES-KSWPLKERGL-----DDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLF  131 (477)
T ss_pred             CcccccCCCCcc-ccceecccCc-----hhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchh
Confidence            566777766666 7777654322     122333333333334456889999999999997   89999986   56699


Q ss_pred             HHHHHHHhh
Q 022555           78 QRTWERSKL   86 (295)
Q Consensus        78 ~~~l~~l~~   86 (295)
                      ++..+.+..
T Consensus       132 ~~qae~il~  140 (477)
T KOG2388|consen  132 QIQAERILK  140 (477)
T ss_pred             hhhHHHHHH
Confidence            988887653

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=92.89  E-value=2.1  Score=41.01  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=57.1

Q ss_pred             chHHHHHHHHhhCCC-CCeEEEECC--chH----HHHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeC
Q 022555           75 PMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG  146 (295)
Q Consensus        75 pLl~~~l~~l~~~~~-i~~IvVv~~--~~~----i~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~  146 (295)
                      .-+..+++.+.+... -.+|+|+.+  ++.    +.++.+++ ++.++.... ..|-..++..|+...  ..|.++++++
T Consensus        88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~-n~Gka~AlN~gl~~a--~~d~iv~lDA  164 (444)
T PRK14583         88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH-NQGKAIALRMGAAAA--RSEYLVCIDG  164 (444)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC-CCCHHHHHHHHHHhC--CCCEEEEECC
Confidence            456788888765422 236777764  222    22333333 345544322 223344566777765  4799999999


Q ss_pred             CcccCCHHHHHHHHHHHHhCCCc
Q 022555          147 DEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       147 D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      |. ..+++.+.++++.+.++++.
T Consensus       165 D~-~~~~d~L~~lv~~~~~~~~~  186 (444)
T PRK14583        165 DA-LLDKNAVPYLVAPLIANPRT  186 (444)
T ss_pred             CC-CcCHHHHHHHHHHHHhCCCe
Confidence            99 67999999999988765543

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=92.59  E-value=2.6  Score=35.00  Aligned_cols=92  Identities=16%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             cCCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHcC----CeEEeCCCCCCCcHHHHHHHHHHc-cccCCEEE
Q 022555           71 ILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----ADVIMTSESCRNGTERCNEALQKL-EKKYDIVV  142 (295)
Q Consensus        71 i~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~~----~~v~~~~~~~~g~~~~i~~al~~~-~~~~d~vl  142 (295)
                      .++...|..+++.+.+... -.+|+|+-+  .+...++++++.    +.++..++. .|...++..++... ....|.++
T Consensus         6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n-~g~~~~~n~~~~~a~~~~~d~v~   84 (202)
T cd04185           6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPEN-LGGAGGFYEGVRRAYELGYDWIW   84 (202)
T ss_pred             eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECccc-cchhhHHHHHHHHHhccCCCEEE
Confidence            3555678889998876432 236777654  344455555433    234444332 23333444444433 12468999


Q ss_pred             EEeCCcccCCHHHHHHHHHHHH
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ++++|. .+++..++.+++.+.
T Consensus        85 ~ld~D~-~~~~~~l~~l~~~~~  105 (202)
T cd04185          85 LMDDDA-IPDPDALEKLLAYAD  105 (202)
T ss_pred             EeCCCC-CcChHHHHHHHHHHh
Confidence            999999 678899999999887

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=92.12  E-value=4.6  Score=35.68  Aligned_cols=101  Identities=15%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             ccccCCcc--hHHHHHHHHhh----CC--CCCeEEEECC--chHHH--------HHHHHc--CC--eEEeCCCCCCCcHH
Q 022555           68 LVNILGKP--MIQRTWERSKL----AT--TLDHLVVATD--DEKIA--------ECCQQF--GA--DVIMTSESCRNGTE  125 (295)
Q Consensus        68 l~~i~gkp--Ll~~~l~~l~~----~~--~i~~IvVv~~--~~~i~--------~~~~~~--~~--~v~~~~~~~~g~~~  125 (295)
                      ++|+.|.+  ++.-+++++.+    ..  .--+|+|+-+  ++++.        ++++++  +.  .++.+++.......
T Consensus         4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag   83 (254)
T cd04191           4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG   83 (254)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence            45666665  36666666543    11  1236766654  22221        233333  23  33444333212223


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      .+..++.......|.++++++|. .+.++.+.+++..+.++++.
T Consensus        84 ~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~v  126 (254)
T cd04191          84 NIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPRA  126 (254)
T ss_pred             HHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCCE
Confidence            45566654322468999999999 78899999999998765543

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=92.08  E-value=3  Score=42.37  Aligned_cols=92  Identities=16%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhCCCCC--eEEEECC--chHH--------HHHHHHcC--CeEEeC--CCCCCCcHHHHHHHHHHccccCCE
Q 022555           77 IQRTWERSKLATTLD--HLVVATD--DEKI--------AECCQQFG--ADVIMT--SESCRNGTERCNEALQKLEKKYDI  140 (295)
Q Consensus        77 l~~~l~~l~~~~~i~--~IvVv~~--~~~i--------~~~~~~~~--~~v~~~--~~~~~g~~~~i~~al~~~~~~~d~  140 (295)
                      ++.+++.+...+.-+  +|+|+.+  ++++        .+++++++  .++.++  ......-...+..+++....+.|+
T Consensus       144 L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~ey  223 (691)
T PRK05454        144 LRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDY  223 (691)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCE
Confidence            555666655443322  6777776  2332        23444542  344433  222111123456666665445699


Q ss_pred             EEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          141 VVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       141 vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      ++++++|. .++++.+.+++..+..+++.
T Consensus       224 ivvLDADs-~m~~d~L~~lv~~m~~dP~v  251 (691)
T PRK05454        224 MVVLDADS-LMSGDTLVRLVRLMEANPRA  251 (691)
T ss_pred             EEEEcCCC-CCCHHHHHHHHHHHhhCcCE
Confidence            99999999 78999999999988765553

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=92.05  E-value=2.7  Score=35.83  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             ccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHH--HcCCeEEeCCCCCCCcHHHHHHHHHHccc-cCCEEEE
Q 022555           70 NILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVN  143 (295)
Q Consensus        70 ~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~--~~~~~v~~~~~~~~g~~~~i~~al~~~~~-~~d~vlv  143 (295)
                      .+++. ..|..+++.+.+.  ..+|+|+-+.  +......+  +.++.++..+. -.|-..+...|++.... +.|++++
T Consensus         5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~-n~G~~~a~N~g~~~a~~~~~d~v~~   81 (237)
T cd02526           5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGE-NLGIAKALNIGIKAALENGADYVLL   81 (237)
T ss_pred             EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECCC-ceehHHhhhHHHHHHHhCCCCEEEE
Confidence            35667 8899999998764  5577776542  22222222  23444444332 23434455666766531 4589999


Q ss_pred             EeCCcccCCHHHHHHHH
Q 022555          144 IQGDEPLIEPEIIDGVV  160 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li  160 (295)
                      +++|. .++++.+..++
T Consensus        82 lD~D~-~~~~~~l~~l~   97 (237)
T cd02526          82 FDQDS-VPPPDMVEKLL   97 (237)
T ss_pred             ECCCC-CcCHhHHHHHH
Confidence            99999 56899999995

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=91.88  E-value=2.5  Score=38.23  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=61.1

Q ss_pred             ccCCcchHHHHHHHHhhCCCCCeEEEEC-C--chHHHHHHHHc---CCeEEeCCCCCCCcHHHHHHHHHHcccc-CCEEE
Q 022555           70 NILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKK-YDIVV  142 (295)
Q Consensus        70 ~i~gkpLl~~~l~~l~~~~~i~~IvVv~-~--~~~i~~~~~~~---~~~v~~~~~~~~g~~~~i~~al~~~~~~-~d~vl  142 (295)
                      .++....+...++.+.+....+..+|++ +  .+...+..+..   ++.++...+. .|...+...+++....+ .++++
T Consensus        11 ~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~N-lG~agg~n~g~~~a~~~~~~~~l   89 (305)
T COG1216          11 TYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGEN-LGFAGGFNRGIKYALAKGDDYVL   89 (305)
T ss_pred             ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCC-ccchhhhhHHHHHHhcCCCcEEE
Confidence            4555667788888777665555555444 3  23334444443   4555555433 24444444455444212 23799


Q ss_pred             EEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 022555          143 NIQGDEPLIEPEIIDGVVKALQAAPDAVFST  173 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~~~~~d~~v~v  173 (295)
                      +++-|. .+++..|+++++.+.+.+...+..
T Consensus        90 ~LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~  119 (305)
T COG1216          90 LLNPDT-VVEPDLLEELLKAAEEDPAAGVVG  119 (305)
T ss_pred             EEcCCe-eeChhHHHHHHHHHHhCCCCeEee
Confidence            999996 578999999999998765544433

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.66  E-value=2.6  Score=39.77  Aligned_cols=103  Identities=21%  Similarity=0.320  Sum_probs=67.2

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHHcC------CeEEeCCC
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFG------ADVIMTSE  118 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~~~------~~v~~~~~  118 (295)
                      .++..+|++-+....             .++.+++++.+...-+ +|+|+.+  .++..+.+++.+      +.+...+.
T Consensus        54 p~vsviiP~ynE~~~-------------~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~  120 (439)
T COG1215          54 PKVSVIIPAYNEEPE-------------VLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEK  120 (439)
T ss_pred             CceEEEEecCCCchh-------------hHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccc
Confidence            456666666544322             7899999998765332 7888876  455555554332      22221111


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  166 (295)
                      ...+-...+..|+....  .|.++++++|. ..+++.+.+++..+...
T Consensus       121 ~~~gK~~al~~~l~~~~--~d~V~~~DaD~-~~~~d~l~~~~~~f~~~  165 (439)
T COG1215         121 KNGGKAGALNNGLKRAK--GDVVVILDADT-VPEPDALRELVSPFEDP  165 (439)
T ss_pred             cCccchHHHHHHHhhcC--CCEEEEEcCCC-CCChhHHHHHHhhhcCC
Confidence            22222456778888773  79999999999 57899999999998764

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=91.53  E-value=3.9  Score=37.66  Aligned_cols=51  Identities=4%  Similarity=0.055  Sum_probs=35.2

Q ss_pred             CeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       111 ~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      +.++..+.. .|-..++..|+...  ..|.++++++|. ..+++.+..+++.+.+
T Consensus       139 i~vi~~~~N-~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~l~~~l~~  189 (333)
T PTZ00260        139 IRLLSLLRN-KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDKLEDIMLK  189 (333)
T ss_pred             EEEEEcCCC-CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence            444433322 24345577788776  468999999998 4678899999988753

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=91.46  E-value=3.7  Score=36.34  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=57.7

Q ss_pred             chHHHHHHHHhhCCCCCeEEEECCc----hHHHHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHcc-ccCCEEEEEeCCc
Q 022555           75 PMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDE  148 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i~~IvVv~~~----~~i~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~-~~~d~vlv~~~D~  148 (295)
                      ..|..+++.+.+.  ..+|+||=+.    +.++...++. .+.++..++ -.|...+...|++... .+.|++++++.|.
T Consensus         8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~-N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~   84 (281)
T TIGR01556         8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGD-NQGIAGAQNQGLDASFRRGVQGVLLLDQDS   84 (281)
T ss_pred             HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCC-CcchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5778888888753  5677777653    2444444432 355554432 2344556666666542 2469999999999


Q ss_pred             ccCCHHHHHHHHHHHHhC
Q 022555          149 PLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       149 Pli~~~~i~~li~~~~~~  166 (295)
                       .++++.+..+++.+.+.
T Consensus        85 -~~~~~~l~~l~~~~~~~  101 (281)
T TIGR01556        85 -RPGNAFLAAQWKLLSAE  101 (281)
T ss_pred             -CCCHHHHHHHHHHHHhc
Confidence             56789999999988754

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>PRK10073 putative glycosyl transferase; Provisional

Probab=90.48  E-value=5.4  Score=36.60  Aligned_cols=88  Identities=9%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             cchHHHHHHHHhhCCCC-CeEEEECC--chHH----HHHHHHc-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555           74 KPMIQRTWERSKLATTL-DHLVVATD--DEKI----AECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i-~~IvVv~~--~~~i----~~~~~~~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~  145 (295)
                      ...|..+++.+.+.... -+|+||-+  .+..    .+++++. .+.++..  .-.|...+.-.|++..  ..+++++++
T Consensus        18 ~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~--~n~G~~~arN~gl~~a--~g~yi~flD   93 (328)
T PRK10073         18 GKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ--ANAGVSVARNTGLAVA--TGKYVAFPD   93 (328)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC--CCCChHHHHHHHHHhC--CCCEEEEEC
Confidence            45678888888754322 26777654  2222    2333333 2444332  2223334456778776  468999999


Q ss_pred             CCcccCCHHHHHHHHHHHHhC
Q 022555          146 GDEPLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~  166 (295)
                      +|. ++.++.++.+++.+.++
T Consensus        94 ~DD-~~~p~~l~~l~~~~~~~  113 (328)
T PRK10073         94 ADD-VVYPTMYETLMTMALED  113 (328)
T ss_pred             CCC-ccChhHHHHHHHHHHhC
Confidence            999 57899999999887653

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=89.99  E-value=5.1  Score=33.26  Aligned_cols=93  Identities=16%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             cCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHH-H---cCCeEEeCCC-CC-CCcHHHHHHHHHHccc------
Q 022555           71 ILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ-Q---FGADVIMTSE-SC-RNGTERCNEALQKLEK------  136 (295)
Q Consensus        71 i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~-~---~~~~v~~~~~-~~-~g~~~~i~~al~~~~~------  136 (295)
                      .+....|..+++.+.+...-.+|+|+-+  .+...++++ .   .++.++..+. .. .|-..++..|++.+..      
T Consensus         6 ~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g   85 (191)
T cd06436           6 LNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG   85 (191)
T ss_pred             cccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence            3556788999998876432336777664  333344443 2   1344443321 11 2333456666665421      


Q ss_pred             ---cCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          137 ---KYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       137 ---~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                         +.+.++++++|. .+++..+..+...+.
T Consensus        86 ~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~  115 (191)
T cd06436          86 ADPERVIIAVIDADG-RLDPNALEAVAPYFS  115 (191)
T ss_pred             cCCCccEEEEECCCC-CcCHhHHHHHHHhhc
Confidence               136899999999 578899999776664

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=89.69  E-value=7.2  Score=32.64  Aligned_cols=88  Identities=13%  Similarity=0.190  Sum_probs=54.5

Q ss_pred             CcchHHHHHHHHhhCC-CCCeEEEECC--chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcc
Q 022555           73 GKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP  149 (295)
Q Consensus        73 gkpLl~~~l~~l~~~~-~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~P  149 (295)
                      ..+.|..+++.+.+.. ...+|+|+-+  .+...+.+++.++.++..+   .|.......|+...  ..+.++++++|. 
T Consensus        10 ~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~---~g~~~a~n~g~~~a--~~~~i~~~D~D~-   83 (221)
T cd02522          10 EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSP---KGRARQMNAGAAAA--RGDWLLFLHADT-   83 (221)
T ss_pred             cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCC---cCHHHHHHHHHHhc--cCCEEEEEcCCC-
Confidence            3456788888877543 2346777754  2444455555444433322   23333445567666  368999999998 


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 022555          150 LIEPEIIDGVVKALQAA  166 (295)
Q Consensus       150 li~~~~i~~li~~~~~~  166 (295)
                      .+++..+++++..+.+.
T Consensus        84 ~~~~~~l~~l~~~~~~~  100 (221)
T cd02522          84 RLPPDWDAAIIETLRAD  100 (221)
T ss_pred             CCChhHHHHHHHHhhcC
Confidence            66899999987766543

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=89.68  E-value=7.8  Score=31.29  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             CCcchHHHHHHHHhhCCC-CCeEEEECC--chHHHHHHHHc----CCeE--EeCCCCCCCcHHHHHHHHHHccccCCEEE
Q 022555           72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQF----GADV--IMTSESCRNGTERCNEALQKLEKKYDIVV  142 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~-i~~IvVv~~--~~~i~~~~~~~----~~~v--~~~~~~~~g~~~~i~~al~~~~~~~d~vl  142 (295)
                      +....|..+++.+.+... -.+|+|+-+  .+...++++++    +.++  +..+....+.......|++..  ..+.++
T Consensus         7 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g~~i~   84 (182)
T cd06420           7 NRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KGDYLI   84 (182)
T ss_pred             CChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cCCEEE
Confidence            334578889998875432 336777665  23333333322    2232  222211111223345666665  468999


Q ss_pred             EEeCCcccCCHHHHHHHHHHH
Q 022555          143 NIQGDEPLIEPEIIDGVVKAL  163 (295)
Q Consensus       143 v~~~D~Pli~~~~i~~li~~~  163 (295)
                      ++++|. .+++..+.++++.+
T Consensus        85 ~lD~D~-~~~~~~l~~~~~~~  104 (182)
T cd06420          85 FIDGDC-IPHPDFIADHIELA  104 (182)
T ss_pred             EEcCCc-ccCHHHHHHHHHHh
Confidence            999999 66888899998876

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=89.60  E-value=6.1  Score=33.68  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             cchHHHHHHHHhhCCCC-C--eEEEECC-chH----HHHHHHH---cCCeE--EeCCCCCCCc-HHHHHHHHHHccccCC
Q 022555           74 KPMIQRTWERSKLATTL-D--HLVVATD-DEK----IAECCQQ---FGADV--IMTSESCRNG-TERCNEALQKLEKKYD  139 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i-~--~IvVv~~-~~~----i~~~~~~---~~~~v--~~~~~~~~g~-~~~i~~al~~~~~~~d  139 (295)
                      ...|..+|+.+.+.... +  +|+|+-+ .+.    +++..++   .+.++  +... ...|. ..++..|+...  ..+
T Consensus        13 ~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~-~~~G~k~~a~n~g~~~a--~~~   89 (232)
T cd06437          13 KYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRA-DRTGYKAGALAEGMKVA--KGE   89 (232)
T ss_pred             HHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECC-CCCCCchHHHHHHHHhC--CCC
Confidence            35677888887653322 1  4555443 222    2222222   13343  2222 22343 34566778776  478


Q ss_pred             EEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          140 IVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       140 ~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      +++++++|. .++++.++.+...+.
T Consensus        90 ~i~~~DaD~-~~~~~~l~~~~~~~~  113 (232)
T cd06437          90 YVAIFDADF-VPPPDFLQKTPPYFA  113 (232)
T ss_pred             EEEEEcCCC-CCChHHHHHhhhhhc
Confidence            999999999 568999999666553

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>PRK10018 putative glycosyl transferase; Provisional

Probab=87.01  E-value=13  Score=33.31  Aligned_cols=90  Identities=11%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CCcchHHHHHHHHhhCCCC-CeEEEECC-c---hHHHHHHHHc---CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           72 LGKPMIQRTWERSKLATTL-DHLVVATD-D---EKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i-~~IvVv~~-~---~~i~~~~~~~---~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      +....|..+++.+.+...- -+|+|+-+ +   +.+.++++++   .+.++..+ .-.|...+.-.|+...  ..+++++
T Consensus        15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~-~n~G~~~a~N~gi~~a--~g~~I~~   91 (279)
T PRK10018         15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND-INSGACAVRNQAIMLA--QGEYITG   91 (279)
T ss_pred             CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC-CCCCHHHHHHHHHHHc--CCCEEEE
Confidence            3345567888877653322 26666654 1   3344555432   23334332 2223344556677776  4789999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHh
Q 022555          144 IQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      +++|. ...++.+..+++.+.+
T Consensus        92 lDaDD-~~~p~~l~~~~~~~~~  112 (279)
T PRK10018         92 IDDDD-EWTPNRLSVFLAHKQQ  112 (279)
T ss_pred             ECCCC-CCCccHHHHHHHHHHh
Confidence            99999 5578889999987765

>PRK10063 putative glycosyl transferase; Provisional

Probab=86.98  E-value=10  Score=33.14  Aligned_cols=87  Identities=8%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             CCcchHHHHHHHHhhC---CCC-CeEEEECC--chHHHHHHHHc----CCeEEeCCCCCCCcHHHHHHHHHHccccCCEE
Q 022555           72 LGKPMIQRTWERSKLA---TTL-DHLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTERCNEALQKLEKKYDIV  141 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~---~~i-~~IvVv~~--~~~i~~~~~~~----~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~v  141 (295)
                      +....|..+++.+.+.   ... -+|+|+-+  .+...++++++    .+.++.. + ..|...++..|+...  ..+++
T Consensus        11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~-~-~~G~~~A~N~Gi~~a--~g~~v   86 (248)
T PRK10063         11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE-P-DNGIYDAMNKGIAMA--QGRFA   86 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC-C-CCCHHHHHHHHHHHc--CCCEE
Confidence            3344567777776421   112 25666643  34444555543    2444432 2 234445677788876  46899


Q ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Q 022555          142 VNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       142 lv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      +++++|.-+ .+..++ ++..+.
T Consensus        87 ~~ld~DD~~-~~~~~~-~~~~~~  107 (248)
T PRK10063         87 LFLNSGDIF-HQDAAN-FVRQLK  107 (248)
T ss_pred             EEEeCCccc-CcCHHH-HHHHHH
Confidence            999987744 454443 344443

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=84.64  E-value=7.2  Score=28.44  Aligned_cols=79  Identities=19%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             cchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-CCeEEeCCCCCCCc-H-HHHHHHHHHccccCCEEEEEeCCc
Q 022555           74 KPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCRNG-T-ERCNEALQKLEKKYDIVVNIQGDE  148 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-~~~v~~~~~~~~g~-~-~~i~~al~~~~~~~d~vlv~~~D~  148 (295)
                      .++|...+...... ++++++|..+  .+...++++++ ++.++..+...... . ....+++..-..+.++++.+++|-
T Consensus         4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DE   82 (97)
T PF13704_consen    4 ADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADE   82 (97)
T ss_pred             HHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeE
Confidence            45777777777776 5999999886  34455666554 45554433222221 1 123333332222579999999998


Q ss_pred             ccCCH
Q 022555          149 PLIEP  153 (295)
Q Consensus       149 Pli~~  153 (295)
                      -+..+
T Consensus        83 fl~~~   87 (97)
T PF13704_consen   83 FLVPP   87 (97)
T ss_pred             EEecC
Confidence            54433

>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.29  E-value=15  Score=30.79  Aligned_cols=91  Identities=14%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHhhCCCCCeEEEECC----chHHHHHHHHcCCeEEeCCCCCCCcHHHHHHHH-HHccccCCEEEEEeCCc
Q 022555           74 KPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEAL-QKLEKKYDIVVNIQGDE  148 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i~~IvVv~~----~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~al-~~~~~~~d~vlv~~~D~  148 (295)
                      +-|++|+++...+.+...+.+.-.+    .....++..-.|...++++... ...+++..+. ..+. ....|+++.-|+
T Consensus        37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~Lg~~lvyqpqGd-d~gdRlars~~~a~~-~~~~VliIg~Dc  114 (211)
T COG3222          37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWLGSFLVYQPQGD-DLGDRLARSHVDAFD-GSYPVLIIGMDC  114 (211)
T ss_pred             HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHhhhheeecccCC-CHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence            4589999998877653333333332    2233344444566667765432 2234554333 2232 236799999999


Q ss_pred             ccCCHHHHHHHHHHHHhC
Q 022555          149 PLIEPEIIDGVVKALQAA  166 (295)
Q Consensus       149 Pli~~~~i~~li~~~~~~  166 (295)
                      |-++.+.+.....++-+.
T Consensus       115 P~lt~elLa~a~taL~~~  132 (211)
T COG3222         115 PGLTAELLADAFTALLQI  132 (211)
T ss_pred             CccCHHHHHHHHHHHhcC
Confidence            999999999988887654

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=82.56  E-value=2.5  Score=35.79  Aligned_cols=87  Identities=21%  Similarity=0.342  Sum_probs=48.5

Q ss_pred             cchHHHHHHHHhhCCC-CCeEEEECC--c----hHHHHHHHHcC---CeEEeCCCCCCC--cH-HHHHHHHHHccccCCE
Q 022555           74 KPMIQRTWERSKLATT-LDHLVVATD--D----EKIAECCQQFG---ADVIMTSESCRN--GT-ERCNEALQKLEKKYDI  140 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~-i~~IvVv~~--~----~~i~~~~~~~~---~~v~~~~~~~~g--~~-~~i~~al~~~~~~~d~  140 (295)
                      .+.|..+++.+.+... --+|+|+.+  +    +.+.+++..++   +.++..+.. .+  +. ..+..+++..  ..|.
T Consensus        13 ~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~-~g~~~k~~a~n~~~~~~--~~d~   89 (228)
T PF13641_consen   13 DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN-PGPGGKARALNEALAAA--RGDY   89 (228)
T ss_dssp             HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-----HHHHHHHHHHHHHHHH-----SE
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC-CCcchHHHHHHHHHHhc--CCCE
Confidence            3577788888875322 125566553  2    23444554443   344443221 12  11 2356777766  4789


Q ss_pred             EEEEeCCcccCCHHHHHHHHHHHH
Q 022555          141 VVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       141 vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ++++++|. .+++..++.+++.+.
T Consensus        90 i~~lD~D~-~~~p~~l~~~~~~~~  112 (228)
T PF13641_consen   90 ILFLDDDT-VLDPDWLERLLAAFA  112 (228)
T ss_dssp             EEEE-SSE-EE-CHHHHHHHHHHH
T ss_pred             EEEECCCc-EECHHHHHHHHHHHH
Confidence            99999999 569999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
1vic_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		1e-47
3oam_A	252	Crystal Structure Of Cytidylyltransferase From Vibr		2e-46
1vh3_A	262	Crystal Structure Of Cmp-kdo Synthetase Length = 26		1e-45
3duv_A	262	Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cyt		1e-45
3k8d_A	264	Crystal Structure Of E. Coli Lipopolysaccharide Spe		4e-44
1h6j_A	245	The Three-Dimensional Structure Of Capsule-Specific		6e-42
1vh1_A	256	Crystal Structure Of Cmp-Kdo Synthetase Length = 25		3e-41
3jtj_A	253	3-Deoxy-Manno-Octulosonate Cytidylyltransferase Fro		7e-38
4fcu_A	253	1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Oct		3e-37
3pol_A	276	2.3 Angstrom Crystal Structure Of 3-deoxy-manno-oct		3e-37
2y6p_A	234	Evidence For A Two-Metal-Ion-Mechanism In The Kdo-C		3e-34
3tqd_A	256	Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytid		3e-34
1qwj_A	229	The Crystal Structure Of Murine Cmp-5-N-Acetylneura		2e-04

>pdb|1VIC|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 151/247 (61%), Gaps = 11/247 (4%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKPMIQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L      + 
Sbjct: 65  VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++   +N Q          YL 
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
           H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
           EK+ + +
Sbjct: 245 EKVRAIL 251

>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio Cholerae Length = 252

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/247 (42%), Positives = 148/247 (59%), Gaps = 9/247 (3%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPAR+ S+R  GKPL +I GKPMIQ  +E++  A   D +++ATDDE++ +  Q FG  
Sbjct: 6   VIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGA-DRVIIATDDERVEQAVQAFGGV 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V MTS + ++GTER  E + K+    D IVVN+QGDEPLI P II  V   L A    + 
Sbjct: 65  VCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYN-----KSGKVNPQFPYLLHLG 226
           + AV      + F+PN VK + D  GYA+YFSR  IP++     K+ K   Q P L H+G
Sbjct: 125 TLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQ-PLLRHIG 183
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEKI 285
           I +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED+E +
Sbjct: 184 IYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVV 243
Query: 286 ESFMRER 292
              + ER
Sbjct: 244 RRIVAER 250

>pdb|1VH3|A Chain A, Crystal Structure Of Cmp-kdo Synthetase Length = 262

Iteration: 1
 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 147/247 (59%), Gaps = 11/247 (4%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKP IQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L        
Sbjct: 65  VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLL 223
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++          KV     YL 
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFXNLQDVQKVQLSDAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
           H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
           EK+ + +
Sbjct: 245 EKVRAIL 251

>pdb|3DUV|A Chain A, Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Haemophilus Influenzae Complexed With The Substrate 3-Deoxy-Manno-Octulosonate In The- Configuration Length = 262

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 147/247 (59%), Gaps = 11/247 (4%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARFASSR  GKPL +I GKP IQ  +E++ L +    +++ATD+E +A+  + FGA+
Sbjct: 6   IIPARFASSRLPGKPLADIKGKPXIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L        
Sbjct: 65  VCXTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNXA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS--------GKVNPQFPYLL 223
           S AV     E+ F+PN VK + D  GY +YFSR +IPY++          KV     YL 
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFXNLQDVQKVQLSDAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDV 282
           H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD  ED+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDL 244
Query: 283 EKIESFM 289
           EK+ + +
Sbjct: 245 EKVRAIL 251

>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo Length = 264

Iteration: 1
 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 145/246 (58%), Gaps = 7/246 (2%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  G
Sbjct: 20  VVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 78
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V MT    ++GTER  E ++K     D ++VN+QGDEP+I   II  V   L      
Sbjct: 79  GEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVG 138
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHL 225
           + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HL
Sbjct: 139 MATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHL 198
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEK 284
           GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E+
Sbjct: 199 GIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLER 258
Query: 285 IESFMR 290
           + + MR
Sbjct: 259 VRAEMR 264

>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From Escherichia Coli Length = 245

Iteration: 1
 Score =  167 bits (423), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 142/242 (58%), Gaps = 5/242 (2%)
Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKVEA--DIYINLQGDEPMIRPRDVETLLQGMRDDP 118
Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
               +T   ++   +A +P+ VK VV+    A+YFSR  IPY ++ +   +  YL H+GI
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE---KARYLKHVGI 175
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
            +Y  + L+ Y  L  +  +  E LEQL+++  G  ++  +V     GVD P  +EK+ +
Sbjct: 176 YAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRA 235
Query: 288 FM 289
            M
Sbjct: 236 LM 237

>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 256

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 140/246 (56%), Gaps = 7/246 (2%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           V IIPAR+AS+R  GKPLV+I GKP I    ER++  +  + ++VATD E +A   +  G
Sbjct: 4   VVIIPARYASTRLPGKPLVDINGKPXIVHVLERAR-ESGAERIIVATDHEDVARAVEAAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V  T    ++GTER  E ++K     D ++VN+QGDEP I   II  V   L      
Sbjct: 63  GEVCXTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPXIPATIIRQVADNLAQRQVG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHL 225
             + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L HL
Sbjct: 123 XATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHL 182
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPEDVEK 284
           GI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V +  +    GVD PED+E+
Sbjct: 183 GIYGYRAGFIRRYVNWQPSPLEHIEXLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLER 242
Query: 285 IESFMR 290
           + +  R
Sbjct: 243 VRAEXR 248

>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From Yersinia Pestis Length = 253

Iteration: 1
 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 51  VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
           + IIPAR+AS+R  GKPL +I GKP +    ER+ LA+  D ++VATD   + +  +  G
Sbjct: 7   IAIIPARYASTRLPGKPLADIAGKPXVVHVXERA-LASGADRVIVATDHPDVVKAVEAAG 65
Query: 111 ADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
            +V +T    ++GTER  E ++       DI+VN+QGDEPL+ P II  V   L A    
Sbjct: 66  GEVCLTRADHQSGTERLAEVIEHYGFADDDIIVNVQGDEPLVPPVIIRQVADNLAACSAG 125
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLHL 225
             + AV     E+AF+PN VK V D  GYA+YFSR  IP+ +      K      +L H+
Sbjct: 126 XATLAVPIASSEEAFNPNAVKVVXDAQGYALYFSRATIPWERERFAQSKETIGDCFLRHI 185
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 264
           GI +Y + F++ Y    P+ L+  E LEQL+VL  G K+
Sbjct: 186 GIYAYRAGFIRRYVNWAPSQLEQIELLEQLRVLWYGEKI 224

>pdb|4FCU|A Chain A, 1.9 Angstrom Crystal Structure Of 3-Deoxy-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Acinetobacter Baumannii Without His- Tag Bound To The Active Site Length = 253

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 14/249 (5%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 5   VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 64
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  + K     DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 65  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 124
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL-----LHL 225
           ST    +   D F  +  VK V+     A+YFSR  IPY++ G    + P L      HL
Sbjct: 125 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE-PTLHTQAFRHL 183
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEK 284
           G+ +Y  + L+ Y       L+  E LEQL+VLENG+++ +   +     GVD   D+++
Sbjct: 184 GLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDR 243
Query: 285 -----IESF 288
                +ESF
Sbjct: 244 LNNMPVESF 252

>pdb|3POL|A Chain A, 2.3 Angstrom Crystal Structure Of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsb) From Acinetobacter Baumannii Length = 276

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 142/251 (56%), Gaps = 18/251 (7%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 28  VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 87
Query: 113 VIMTSESCRNGTERCNEALQ-KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  + K     DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 88  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 147
Query: 172 STAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL-----LHL 225
           ST    +   D F  +  VK V+     A+YFSR  IPY++ G    + P L      HL
Sbjct: 148 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDE-PTLHTQAFRHL 206
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH---GVDAPEDV 282
           G+ +Y  + L+ Y       L+  E LEQL+VLENG+++ +     EA+   GVD   D+
Sbjct: 207 GLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVA--EANLPPGVDTQADL 264
Query: 283 EK-----IESF 288
           ++     +ESF
Sbjct: 265 DRLNNMPVESF 275

>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The Kdo-Cytidylyltransferase Kdsb Length = 234

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 13/239 (5%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPAR  S+R + KPL N+LGKP+I+  W    L  T + +++ATD E++ E  +    +
Sbjct: 6   IIPARLGSTRLKEKPLKNLLGKPLIR--WVVEGLVKTGERVILATDSERVKEVVEDL-CE 62
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172
           V +T     +G++R    ++ L+   D+++N QGDEP +  E I  + + L+     V  
Sbjct: 63  VFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGERVV-- 118
Query: 173 TAVTSLKPEDAFD-PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYD 231
               + K ++A++ P  VK V+D  GYA+YFSR  IPY +    N  F  L H+GI  + 
Sbjct: 119 --TLARKDKEAYERPEDVKVVLDREGYALYFSRSPIPYFRK---NDTFYPLKHVGIYGFR 173
Query: 232 SNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 290
              L  +  + P+ L+  E LEQL++LENG K+KV+  ++  HGVD  ED++ +E  ++
Sbjct: 174 KETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK 232

>pdb|3TQD|A Chain A, Structure Of The 3-Deoxy-D-Manno-Octulosonate Cytidylyltransferase (Kdsb) From Coxiella Burnetii Length = 256

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 138/245 (56%), Gaps = 9/245 (3%)
Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           IIPARF S+R  GK LV+I GKP IQ  +E S + +  + +V+ATDD++I +  + FGA 
Sbjct: 13  IIPARFDSTRLPGKALVDIAGKPXIQHVYE-SAIKSGAEEVVIATDDKRIRQVAEDFGAV 71
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V  TS   ++GTER  EA   L  + D I+V +QGDEPLI P+ I  + + L    +   
Sbjct: 72  VCXTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKV 131
Query: 172 STAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNK---SGKVNPQF--PYLLHL 225
           ++  T +   D  F+P+  K V++   YA+YFS   IP+ +   S K N Q    +  H+
Sbjct: 132 ASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHV 191
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA-HGVDAPEDVEK 284
           GI +Y   FL+ Y      P +  E LEQL++L +G ++  +    +   GVD  ED+E+
Sbjct: 192 GIYAYRVGFLEEYLSWDACPAEKXEALEQLRILWHGGRIHXVVAKSKCPPGVDTEEDLER 251
Query: 285 IESFM 289
           + ++ 
Sbjct: 252 VRAYF 256

>pdb|1QWJ|A Chain A, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic Acid Synthetase Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 50  VVGIIPARFASSRFEGKPLVNI---LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC 106
           +  ++ AR  S   +G PL NI    G P+I      +  A     + V+TD ++I    
Sbjct: 4   LAALVLARGGS---KGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVA 60
Query: 107 QQFGADV-IMTSESCRNGTERCNEALQKL--EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
           +QFGA V   +SE+ ++ +   +  ++ L    + DIV NIQ   P + P  +  V + +
Sbjct: 61  KQFGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMI 120
Query: 164 -QAAPDAVFST 173
            +   D+VFS 
Sbjct: 121 REEGYDSVFSV 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	1e-130
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	1e-122
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	1e-120
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	1e-119
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	1e-116
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	1e-116
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	1e-114
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	3e-21
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	2e-19
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	2e-13
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	2e-11
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	5e-10
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	2e-08
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	8e-08
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	1e-07
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	1e-07
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	8e-07
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	2e-06
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	3e-06
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	3e-06
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	4e-06
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	2e-05
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	2e-05
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	2e-04
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	3e-04
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	8e-04

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245

 Score =  368 bits (947), Expect = e-130
 Identities = 88/248 (35%), Positives = 143/248 (57%), Gaps = 5/248 (2%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+E   DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKVE--ADIYINLQGDEPMIRPRDVETLLQGMRDDP 118

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
               +T   ++   +A +P+ VK VV+    A+YFSR  IPY ++ +   +  YL H+GI
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE---KARYLKHVGI 175

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
            +Y  + L+ Y  L  +  +  E LEQL+++  G  ++  +V     GVD P  +EK+ +
Sbjct: 176 YAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRA 235

Query: 288 FMRERNLS 295
            M +    
Sbjct: 236 LMAQELAE 243

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Length = 253

 Score =  347 bits (894), Expect = e-122
 Identities = 89/247 (36%), Positives = 136/247 (55%), Gaps = 7/247 (2%)

Query: 53  IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
           +IPARF+SSR  GKPL+ I  +PMI R  +++K     D L VATDDE+IAE C+  G D
Sbjct: 5   VIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAEGVD 64

Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
           V++TS    +GT+R +E  +       DI+VN+QGDEPL+  +++  V K L   P+   
Sbjct: 65  VVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSM 124

Query: 172 STAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG----KVNPQFPYLLHLG 226
           ST    +   ++    + VK V+     A+YFSR  IPY++ G    +         HLG
Sbjct: 125 STLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLG 184

Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPEDVEKI 285
           + +Y  + L+ Y       L+  E LEQL+VLENG+++ +   +     GVD   D++++
Sbjct: 185 LYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRL 244

Query: 286 ESFMRER 292
            +   E 
Sbjct: 245 NNMPVES 251

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} Length = 256

 Score =  343 bits (882), Expect = e-120
 Identities = 85/248 (34%), Positives = 138/248 (55%), Gaps = 9/248 (3%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               IIPARF S+R  GK LV+I GKPMIQ  +E +   +  + +V+ATDD++I +  + 
Sbjct: 9   EFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAI-KSGAEEVVIATDDKRIRQVAED 67

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FGA V MTS   ++GTER  EA   L  +  +I+V +QGDEPLI P+ I  + + L    
Sbjct: 68  FGAVVCMTSSDHQSGTERIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHD 127

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG-----KVNPQFPY 221
           +   ++  T +   ++ F+P+  K V++   YA+YFS   IP+ +        +     +
Sbjct: 128 NVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFSHAPIPWGRDTFSDKENLQLNGSH 187

Query: 222 LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA-HGVDAPE 280
             H+GI +Y   FL+ Y      P +  E LEQL++L +G ++ ++    +   GVD  E
Sbjct: 188 YRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEE 247

Query: 281 DVEKIESF 288
           D+E++ ++
Sbjct: 248 DLERVRAY 255

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252

 Score =  341 bits (878), Expect = e-119
 Identities = 101/251 (40%), Positives = 145/251 (57%), Gaps = 9/251 (3%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               +IPAR+ S+R  GKPL +I GKPMIQ  +E++      D +++ATDDE++ +  Q 
Sbjct: 2   SFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAM-QAGADRVIIATDDERVEQAVQA 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FG  V MTS + ++GTER  E + K+      IVVN+QGDEPLI P II  V   L AA 
Sbjct: 61  FGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNL-AAC 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF----PYL 222
            A  +T    ++   + F+PN VK + D  GYA+YFSR  IP+++            P L
Sbjct: 120 SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADKAIVQPLL 179

Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVDAPED 281
            H+GI +Y + F+  Y    P+ L+  E LEQL+VL +G K+ V + ++    GVD PED
Sbjct: 180 RHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPED 239

Query: 282 VEKIESFMRER 292
           +E +   + ER
Sbjct: 240 LEVVRRIVAER 250

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262

 Score =  334 bits (859), Expect = e-116
 Identities = 105/256 (41%), Positives = 150/256 (58%), Gaps = 13/256 (5%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
               IIPARFASSR  GKPL +I GKPMIQ  +E++   +    +++ATD+E +A+  + 
Sbjct: 2   SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKAL-QSGASRVIIATDNENVADVAKS 60

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
           FGA+V MTS +  +GTER  E ++KL     +I+VNIQGDEPLI P I+  V   L A  
Sbjct: 61  FGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNL-AKF 119

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--------KVNPQ 218
           +   ++    +   E+ F+PN VK + D  GY +YFSR +IPY++          KV   
Sbjct: 120 NVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLS 179

Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV-IKVDHEAHGVD 277
             YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V +  +  A GVD
Sbjct: 180 DAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVD 239

Query: 278 APEDVEKIESFMRERN 293
             ED+EK+ + +    
Sbjct: 240 TAEDLEKVRAILAANG 255

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264

 Score =  333 bits (856), Expect = e-116
 Identities = 101/249 (40%), Positives = 142/249 (57%), Gaps = 9/249 (3%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
             V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   + 
Sbjct: 18  SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEA 76

Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            G +V MT    ++GTER  E ++K       ++VN+QGDEP+I   II  V   L A  
Sbjct: 77  AGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNL-AQR 135

Query: 168 DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYL 222
               +T    +   E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L
Sbjct: 136 QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFL 195

Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPED 281
            HLGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V         GVD PED
Sbjct: 196 RHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPED 255

Query: 282 VEKIESFMR 290
           +E++ + MR
Sbjct: 256 LERVRAEMR 264

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Length = 234

 Score =  327 bits (842), Expect = e-114
 Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 11/243 (4%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           R   IIPAR  S+R + KPL N+LGKP+I+   E        + +++ATD E++ E  + 
Sbjct: 2   RRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVED 59

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
              +V +T     +G++R    ++ L+   D+++N QGDEP +  E I  + + L+    
Sbjct: 60  LC-EVFLTPSDLPSGSDRVLYVVRDLD--VDLIINYQGDEPFVYEEDIKLIFRELEKGER 116

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ 228
               T     K E    P  VK V+D  GYA+YFSR  IPY +    N  F  L H+GI 
Sbjct: 117 V--VTLARKDK-EAYERPEDVKVVLDREGYALYFSRSPIPYFRK---NDTFYPLKHVGIY 170

Query: 229 SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 288
            +    L  +  + P+ L+  E LEQL++LENG K+KV+  ++  HGVD  ED++ +E  
Sbjct: 171 GFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEK 230

Query: 289 MRE 291
           ++ 
Sbjct: 231 LKN 233

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Length = 228

 Score = 88.8 bits (221), Expect = 3e-21
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + +I AR  S     K L  + G  ++  T   +  +   D ++V+TD   IAE  + 
Sbjct: 4   QNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKN 63

Query: 109 FGADVIM----------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
           FG +V++          +S S          AL+ +      V  +Q   PL     I  
Sbjct: 64  FGVEVVLRPAELASDTASSISG------VIHALETIGSNSGTVTLLQPTSPLRTGAHIRE 117

Query: 159 VVKALQAAP-DAVFSTAVTSLKP 180
                      +V S       P
Sbjct: 118 AFSLFDEKIKGSVVSACPMEHHP 140

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Length = 229

 Score = 83.8 bits (208), Expect = 2e-19
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
            +  ++ AR  S     K +  + G P+I      +  A     + V+TD ++I    +Q
Sbjct: 3   HLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQ 62

Query: 109 FGADVIM----------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
           FGA V            TS           E L     + DIV NIQ   P + P  +  
Sbjct: 63  FGAQVHRRSSETSKDSSTSLDA------IVEFLNYHN-EVDIVGNIQATSPCLHPTDLQK 115

Query: 159 VVKALQAA-PDAVFS 172
           V + ++    D+VFS
Sbjct: 116 VAEMIREEGYDSVFS 130

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 36/250 (14%), Positives = 71/250 (28%), Gaps = 37/250 (14%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
           R   I+ A              K LV   G+PM++   E    A      V        A
Sbjct: 2   RPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPA 61

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
                     ++ +           +AL+ +E     V+   GD P +  E +  V+   
Sbjct: 62  PALTLPDRGGLLENLE---------QALEHVE---GRVLVATGDIPHLTEEAVRFVLDKA 109

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH--GYAIYFSRG-----LIPYNKSGKVN 216
             A          +++            + +    G  +           +P  +     
Sbjct: 110 PEAALVYPIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRVVAL 169

Query: 217 PQFPYLL--HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH 274
            + P  L   +G        L        +  ++E   +++     G + + +   +   
Sbjct: 170 RKRPLALARLVGWD-----VLLKLLLGRLSLAEVEARAQRIL----GVEARALVTPYPEV 220

Query: 275 G--VDAPEDV 282
           G  VD  ED+
Sbjct: 221 GVDVDREEDL 230

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 47  RSRVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
           RSRV G++ A   S R    K L+ +    ++  T   +      D L+V      +++ 
Sbjct: 3   RSRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMA-RRCPFDQLIVTLGGAADEVL 61

Query: 104 ECCQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156
           E  +  G D+++        S S ++        L  ++   + +V + GD+P I    +
Sbjct: 62  EKVELDGLDIVLVDDAGLGCSSSLKSA-------LTWVDPTAEGIVLMLGDQPGITASAV 114

Query: 157 DGVVKALQAAPDAV 170
             ++   + A  AV
Sbjct: 115 ASLIAGGRGATIAV 128

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 18/134 (13%)

Query: 47  RSRVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
            +++ G++ A   S+R    K L+      ++  T + +      D L++        + 
Sbjct: 3   ATQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVA-RQAGFDQLILTLGGAASAVR 61

Query: 104 ECCQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEII 156
                 G DV++        + S R         L ++  +   +V + GD+P + P  +
Sbjct: 62  AAMALDGTDVVVVEDVERGCAASLRVA-------LARVHPRATGIVLMLGDQPQVAPATL 114

Query: 157 DGVVKALQAAPDAV 170
             ++    A    V
Sbjct: 115 RRIIDVGPATEIMV 128

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 48  SRVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI 102
             VV I+PA     R A      K    + G+ +I+R  +    +  +D +VVA   ++ 
Sbjct: 6   GEVVAIVPAAGSGERLAVGV--PKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRT 63

Query: 103 AECCQQFGADVIMT------SESCRNGTERCNEALQKLEKKYDI-VVNIQ-GDEPLIEPE 154
            E  Q  G   ++       +++           L  L    +   V +      L  P 
Sbjct: 64  DEARQILGHRAMIVAGGSNRTDTVNLA-------LTVLSGTAEPEFVLVHDAARALTPPA 116

Query: 155 IIDGVVKALQAAPDAV 170
           ++  VV+AL+    AV
Sbjct: 117 LVARVVEALRDGYAAV 132

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
             V ++PA     R  + R   K  V + G P+++      + +  +D +V+A       
Sbjct: 2   ATVAVVPAAGSGERLRAGR--PKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTD 59

Query: 104 ECCQQFGADVIMT-------SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEI 155
           E    FG +  +        +ES     E   +A        + V+ +      L  P +
Sbjct: 60  ESKLVFGGEDSVIVSGGVDRTESVALALEAAGDA--------EFVL-VHDAARALTPPAL 110

Query: 156 IDGVVKALQAAPDAV 170
           I  VV AL+    AV
Sbjct: 111 IARVVAALKEGHSAV 125

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDE 100
            V  I+ A     R   S    K  + +LG+P+   ++        +  +VV       +
Sbjct: 4   SVSVILLAGGQGKRMKMSM--PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRD 61

Query: 101 KIAECCQQFGADVIMTS------ESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEP 153
              E  +    D+          +S  +G       LQ+++   ++V  I     PL+  
Sbjct: 62  IFEEYEESIDVDLSFAIPGKERQDSVYSG-------LQEIDVNSELVC-IHDSARPLVNT 113

Query: 154 EIIDGVVKALQAAPDAVFSTAVT 176
           E ++ V+K   A   AV      
Sbjct: 114 EDVEKVLKDGSAVGAAVLGVPAK 136

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
             V I+ A     R      K  + I G+ + +        +  +D +V+ T  E     
Sbjct: 13  MNVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVV 72

Query: 106 CQQFGADVIMT--------SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEII 156
            ++   + ++         S+S R+        L+ LEK     V +     P +  + +
Sbjct: 73  EKRVFHEKVLGIVEGGDTRSQSVRSA-------LEFLEKFSPSYVLVHDSARPFLRKKHV 125

Query: 157 DGVVKALQAAPDAVFSTAVT-SLK 179
             V++  +    A  +   + +L 
Sbjct: 126 SEVLRRARETGAATLALKNSDALV 149

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 49  RVVGIIPARFASSRFEG-KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAEC 105
            +  II A     RF G K L  I   P+I RT    ++   L+ +++     +E +   
Sbjct: 2   NIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRT---IRIYGDLEKIIIVGKYVNEMLPLL 58

Query: 106 CQQFGADVIM-------TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                  VI         S S + G       L+  +    ++V   GD P +  E ++ 
Sbjct: 59  M---DQIVIYNPFWNEGISTSLKLG-------LRFFKDYDAVLV-ALGDMPFVTKEDVNK 107

Query: 159 VVKALQAAPDAVFST 173
           ++   +    AV  T
Sbjct: 108 IINTFKPNCKAVIPT 122

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/136 (11%), Positives = 43/136 (31%), Gaps = 25/136 (18%)

Query: 49  RVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEK 101
            V  ++PA     R  +     K  ++I  + +++ +         +  +V+A    D +
Sbjct: 7   DVCAVVPAAGFGRRMQTEC--PKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSR 64

Query: 102 IAECCQQFGADVIMTS------ESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPE 154
            A+        + +        +S   G       L+        V+ +     P +  +
Sbjct: 65  FAQLPLANHPQITVVDGGDERADSVLAG-------LKAA-GDAQWVL-VHDAARPCLHQD 115

Query: 155 IIDGVVKALQAAPDAV 170
            +  ++   + +    
Sbjct: 116 DLARLLALSETSRTGG 131

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 66  KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIAECCQQFGAD--VIMTSESCR 121
           KPL+ + G+ +I         +  ++++ +AT  +  K  E       D   I+  ++  
Sbjct: 19  KPLIKLCGRCLIDYVVSPLLKS-KVNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDTSG 77

Query: 122 NGTERCNEALQKLEKKYD---IVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTS 177
            G     E L +    +    +VV+   D   ++ +II+ +V              A+  
Sbjct: 78  KGYI---EDLNECIGYFSEPFLVVS--SDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132

Query: 178 LKPEDAF 184
           + P++ +
Sbjct: 133 MIPKEKY 139

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 35/145 (24%)

Query: 48  SRVVGIIPA-----RFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDE 100
            + + +IPA     RF + +   K  V I  K +++      +    +D  VV    +D 
Sbjct: 5   RKNIALIPAAGIGVRFGADK--PKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT 62

Query: 101 KIAECCQQFGADVIMT------SESCRNGTERCNEALQKLEKKYDIVVNIQGDE------ 148
              +    F    +        +E+ RNG       + KL +           +      
Sbjct: 63  FADKVQTAFPQVRVWKNGGQTRAETVRNG-------VAKLLET----GLAAETDNILVHD 111

Query: 149 ---PLIEPEIIDGVVKALQAAPDAV 170
                +  E +  +++    A +  
Sbjct: 112 AARCCLPSEALARLIEQAGNAAEGG 136

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 29/150 (19%)

Query: 48  SRVVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDE 100
           S +   I A    +R       K  + + GKP+I  T E+  L T  D +++++      
Sbjct: 2   SLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMN 61

Query: 101 KIAECCQQFGADVIMT--------SESCRNGTERCNEALQKLEKKY-----DIVVNIQ-G 146
              +  +++ +D  +         +E+  NG       ++ +EK Y     DI+V     
Sbjct: 62  HAEDNIKKYISDDRIVVIEGGEDRNETIMNG-------IRFVEKTYGLTDDDIIV-THDA 113

Query: 147 DEPLIEPEIIDGVVKALQAAPDAVFSTAVT 176
             P +   II+  + A              
Sbjct: 114 VRPFLTHRIIEENIDAALETGAVDTVIEAL 143

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 30/158 (18%), Positives = 49/158 (31%), Gaps = 34/158 (21%)

Query: 49  RVVGIIPARFASSRFEGKP--LVNILGKPMIQRTWERSKLATTLDH----LVVATDDEKI 102
            V  +IPA     R    P   + + G+ +++ T     LA   D     + +    E  
Sbjct: 25  EVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWT-----LAAFRDAAEVLVALPPGAEPP 79

Query: 103 AECCQQF---GADVIMT-SESCRNGTERCNEALQKLEKKYDIVVNIQ-GDEPLIEPEIID 157
                 F   GA    T   S           L+         V +     P +   ++ 
Sbjct: 80  KGLGAVFLEGGA----TRQASVARL-------LEAASLPL---VLVHDVARPFVSRGLVA 125

Query: 158 GVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVD 194
            V++A Q +  AV    V  +L    A +      VV 
Sbjct: 126 RVLEAAQRSGAAVPVLPVPDTLM---APEGEAYGRVVP 160

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 48  SRVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAE 104
           S +  I+ A   S+RF     K  + +   P+     +          +VV + +     
Sbjct: 2   SEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYM- 60

Query: 105 CCQQFGADVIMT------SESCRNGTERCNEALQKLEKKY----DIVVNIQGDEPLIEPE 154
             ++F  +          +ES +         L+ ++ ++    D+         L+   
Sbjct: 61  --KKFTKNYEFIEGGDTRAESLKKA-------LELIDSEFVMVSDVA------RVLVSKN 105

Query: 155 IIDGVVKALQAAPDAVFSTAVT-SLK 179
           + D +++ L  A     +  V  +  
Sbjct: 106 LFDRLIENLDKADCITPALKVADTTL 131

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 21/248 (8%), Positives = 55/248 (22%), Gaps = 26/248 (10%)

Query: 53  IIPARFASSRFEG------KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC- 105
           +IP    SSRF        K ++   G+ + + +             +    +       
Sbjct: 3   VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62

Query: 106 -------CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158
                         +       R   E     L++L K+      +     +    I   
Sbjct: 63  VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQG-----VDYQGSITVFNIDTF 117

Query: 159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ 218
               +           +   +       N      ++ G                     
Sbjct: 118 RPNFVFPDISQHSDGYLEVFQG---GGDNWSFAKPEHAGSTKVIQTAEKNPISDLCSTGL 174

Query: 219 FPYL-LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA-HGV 276
           + +      +++Y     +         L +     +L  ++ G  +    +        
Sbjct: 175 YHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNEL--IQKGLNIHYHLIARHEVIFC 232

Query: 277 DAPEDVEK 284
             P++   
Sbjct: 233 GVPDEYTD 240

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 17/143 (11%)

Query: 50  VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVAT---DDEKI 102
           +   I A    +R       K  + +  +P++  T E+  L  +++ +VV          
Sbjct: 3   IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62

Query: 103 AECCQQFGADVIMTSESCRNGTERCN---EALQKLEKKY-----DIVVNIQ-GDEPLIEP 153
            +   ++           + G +R       ++ ++        DIVV       P I  
Sbjct: 63  EDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVV-THDSVRPFITL 121

Query: 154 EIIDGVVKALQAAPDAVFSTAVT 176
            +I   ++  Q            
Sbjct: 122 RMIQDNIQLAQNHDAVDTVVEAV 144

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Length = 201

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 37  RAYLGRSKNFRSRVVGIIPARFASSRF-EGKPLVNILGKPMIQRTWERSKLATTLDHLVV 95
           R +  R  +        + A   S RF E K L  I GK +I+R +E     +    + +
Sbjct: 2   RTFTWRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYET--AKSVFKEVYI 59

Query: 96  ATDDEKIAECCQQFGADVI 114
              D    E      A V+
Sbjct: 60  VAKDR---EKFSFLNAPVV 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	100.0
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	100.0
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	100.0
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	100.0
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	100.0
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	100.0
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	100.0
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	99.97
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	99.97
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	99.97
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	99.96
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.95
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.95
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.95
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.94
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.94
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	99.94
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.94
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.94
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.94
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.94
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.94
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.94
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	99.93
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.93
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	99.93
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.93
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	99.92
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.92
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	99.92
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	99.92
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	99.92
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.92
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.91
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.91
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.91
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	99.91
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.9
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.9
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	99.89
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.89
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.89
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.89
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.88
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	99.88
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	99.88
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	99.88
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	99.87
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	99.86
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	99.85
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	99.38
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.33
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	99.29
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	99.23
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	98.94
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	98.81
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	98.81
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	97.89
3r3i_A	528	UTP--glucose-1-phosphate uridylyltransferase; ross	97.83
3ogz_A	630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	96.76
3gue_A	484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	96.34
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	96.09
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	95.76
3bcv_A	240	Putative glycosyltransferase protein; protein stru	95.72
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	95.7
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	95.64
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	94.75
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	94.28
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	93.58
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	93.2
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	92.9
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	89.08
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	88.65

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=100.00  E-value=1.2e-42  Score=306.88  Aligned_cols=242  Identities=35%  Similarity=0.586  Sum_probs=201.5

Q ss_pred             CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      .+|++.+||||||.||||++|+|++++|||||+|+++++.+++ +++|+|+++++++.++++++++++++..+...+|+.
T Consensus         6 ~~M~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~~~-i~~VvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~   84 (256)
T 3tqd_A            6 GKMEFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIKSG-AEEVVIATDDKRIRQVAEDFGAVVCMTSSDHQSGTE   84 (256)
T ss_dssp             ---CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHH
T ss_pred             cCCCceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCCcHH
Confidence            3478999999999999999999999999999999999999885 999999999999999888899998776556677888


Q ss_pred             HHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEee
Q 022555          126 RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFS  203 (295)
Q Consensus       126 ~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~  203 (295)
                      ++..+++.+. .+.|.+++++||+||+++++++++++.+.+++++.+++.+.+++ .++..+|+.+||+.|++|++++|+
T Consensus        85 ~i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~l~fs  164 (256)
T 3tqd_A           85 RIAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYALYFS  164 (256)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBEEEEE
T ss_pred             HHHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEEeEEe
Confidence            8888988873 13689999999999999999999999998654444555556664 345678999999999999999999


Q ss_pred             cCCCCCCCCCCC-----CCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecC-CcCCCC
Q 022555          204 RGLIPYNKSGKV-----NPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVD  277 (295)
Q Consensus       204 ~~~i~~~r~~~~-----~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~-~~idId  277 (295)
                      ++++|++|+...     ....+++.++|+|+|++++|..+..+.++.+|..|.+++++++++|.+|++++.++ .|+|||
T Consensus       165 r~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~id  244 (256)
T 3tqd_A          165 HAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVD  244 (256)
T ss_dssp             SSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCS
T ss_pred             cCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcC
Confidence            999988875321     11236789999999999999999888888899888888999999999999999985 589999


Q ss_pred             CHHHHHHHHHH
Q 022555          278 APEDVEKIESF  288 (295)
Q Consensus       278 tpeDl~~ae~l  288 (295)
                      ||+||++|+++
T Consensus       245 tpeDl~~a~~~  255 (256)
T 3tqd_A          245 TEEDLERVRAY  255 (256)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHHh
Confidence            99999999875

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=100.00  E-value=4.9e-42  Score=302.56  Aligned_cols=242  Identities=37%  Similarity=0.586  Sum_probs=205.0

Q ss_pred             eEEEEEcCCCCCCCCCccccccCCcchHHHHH-HHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTW-ERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (295)
Q Consensus        50 i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l-~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~  128 (295)
                      +.+||||||+|+||++|+|++++|||||+|++ +++++++ +++|+|+++++++.+++++++++++...+...+|+.++.
T Consensus         2 ~~aiIlA~G~stR~~~K~L~~i~GkPli~~~i~~~~~~~~-~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~   80 (253)
T 4fcu_A            2 KHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEG-FDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLS   80 (253)
T ss_dssp             EEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHHTCTT-CCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHH
T ss_pred             eEEEEEeCCCCCCCCCCceeeECCeEhHHHHHHHHHHhcC-CCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHH
Confidence            57999999999999999999999999999999 9998874 999999999999998888889988765555667778899


Q ss_pred             HHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeecCC
Q 022555          129 EALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGL  206 (295)
Q Consensus       129 ~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~~~  206 (295)
                      .|+..+.. +.|.+++++||+||+++++|+++++.+.++++..+++++++++. ++..+|+.+|++.|++|++++|++++
T Consensus        81 ~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~fsr~~  160 (253)
T 4fcu_A           81 EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT  160 (253)
T ss_dssp             HHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEEEESSC
T ss_pred             HHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEEecCCC
Confidence            99988752 35899999999999999999999999987544333444445432 34578888999999999999999999


Q ss_pred             CCCCCCCCCC-C---CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCC-cCCCCCHHH
Q 022555          207 IPYNKSGKVN-P---QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHE-AHGVDAPED  281 (295)
Q Consensus       207 i~~~r~~~~~-~---~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~-~idIdtpeD  281 (295)
                      +|++|+.... +   ..++..|+|+|+|++++|..+....++++|.+|.+++++++++|.+|+++..+.. |+|||||+|
T Consensus       161 ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeD  240 (253)
T 4fcu_A          161 IPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD  240 (253)
T ss_dssp             CSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHH
T ss_pred             CCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHH
Confidence            9988864211 1   1256789999999999999988777888998898888888889999999999877 999999999


Q ss_pred             HHHHHHHHHHh
Q 022555          282 VEKIESFMRER  292 (295)
Q Consensus       282 l~~ae~ll~~r  292 (295)
                      |+.|++++++|
T Consensus       241 L~~a~~~l~~r  251 (253)
T 4fcu_A          241 LDRLNNMPVES  251 (253)
T ss_dssp             HHHHHTSCGGG
T ss_pred             HHHHHHHHHhh
Confidence            99999998876

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=100.00  E-value=1.6e-41  Score=300.98  Aligned_cols=245  Identities=40%  Similarity=0.661  Sum_probs=201.7

Q ss_pred             CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC
Q 022555           43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      +++..|++.+||||||.|||||+|+|++++|||||+|+++++.+++ +++|+|+++++++.++++++++++++..+...+
T Consensus        12 ~~~~~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~~~~i~~~~~~~g~~v~~~~~~~~~   90 (264)
T 3k8d_A           12 PRGSHMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQS   90 (264)
T ss_dssp             ------CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCS
T ss_pred             cCCCCCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHcCCEEEEecCCCCC
Confidence            4567789999999999999998899999999999999999999885 999999999999988888889988776556678


Q ss_pred             cHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEE
Q 022555          123 GTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       123 ~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~  200 (295)
                      |+.++..++..+. .+.|.+++++||+||+++++++++++.+.+. ++.+++.+.+++. +++.+|+.+|++.|++|+++
T Consensus        91 Gt~~i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~-~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g~~l  169 (264)
T 3k8d_A           91 GTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR-QVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYAL  169 (264)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS-SCSEEEEEEECCSHHHHTCTTSCEEEECTTSBEE
T ss_pred             CHHHHHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc-CCCEEEEEEEcCCHHHccCCCceEEEECCCCeEE
Confidence            8888888887763 2468999999999999999999999999753 4444555566642 45568899999889999999


Q ss_pred             EeecCCCCCCCCCC---CCC-CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEe-cCCcCC
Q 022555          201 YFSRGLIPYNKSGK---VNP-QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKV-DHEAHG  275 (295)
Q Consensus       201 ~~~~~~i~~~r~~~---~~~-~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~-~~~~id  275 (295)
                      +|+++++|++|+..   ..| ..+++.++|+|+|++++|..+..+.++.+|..|.+++++++++|.+|+++.. +..|+|
T Consensus       170 ~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~  249 (264)
T 3k8d_A          170 YFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTG  249 (264)
T ss_dssp             EEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCC
T ss_pred             EEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCC
Confidence            99999988776421   001 1247899999999999999887777788888888888888899999999864 568999


Q ss_pred             CCCHHHHHHHHHHH
Q 022555          276 VDAPEDVEKIESFM  289 (295)
Q Consensus       276 IdtpeDl~~ae~ll  289 (295)
                      ||||+||++|++++
T Consensus       250 IdtpeDl~~a~~~l  263 (264)
T 3k8d_A          250 VDTPEDLERVRAEM  263 (264)
T ss_dssp             CCSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999886

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=100.00  E-value=4.5e-41  Score=296.46  Aligned_cols=244  Identities=41%  Similarity=0.676  Sum_probs=203.4

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||+|||||+|+|++++|||||+|+++++.+++ +++|+|+++++.+.+++.++++++++..+....|+.++
T Consensus         1 M~~~aiIlA~G~stRlp~K~L~~i~GkPli~~~l~~l~~~~-~~~ivVv~~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~~   79 (252)
T 3oam_A            1 MSFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAG-ADRVIIATDDERVEQAVQAFGGVVCMTSPNHQSGTERL   79 (252)
T ss_dssp             CCEEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCTTCCSHHHHH
T ss_pred             CceEEEEecCcCCCCCCCcceeeECCEEHHHHHHHHHHhCC-CCeEEEECCHHHHHHHHHHcCCEEEEcCCCCCCcHHHH
Confidence            68999999999999998899999999999999999999885 99999999999999988888999877655666788888


Q ss_pred             HHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecC
Q 022555          128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       128 ~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ..++..+. .+.|.|++++||+||+++++++++++.+.++ ++.+++.+.++. ++++.+|+..+++.|++|++++|+++
T Consensus        80 ~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~~fsr~  158 (252)
T 3oam_A           80 AEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAAC-SAPMATLAVEIEDEAEVFNPNAVKVITDKSGYALYFSRA  158 (252)
T ss_dssp             HHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHS-SCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEEEEESS
T ss_pred             HHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhc-CCCEEEEeeecCCHHHhhCCCceEEEECCCCeEEEEeCC
Confidence            88888773 1368999999999999999999999999764 333444445554 23456777788889999999999999


Q ss_pred             CCCCCCCCCC--CC--CCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHH
Q 022555          206 LIPYNKSGKV--NP--QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPE  280 (295)
Q Consensus       206 ~i~~~r~~~~--~~--~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpe  280 (295)
                      ++|+.|+...  +.  ..+++.|+|+|+|++++|..+....++.++..|.+++++.+++|.+|.++..+ .+|+|||||+
T Consensus       159 ~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~  238 (252)
T 3oam_A          159 TIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPE  238 (252)
T ss_dssp             CSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHH
T ss_pred             CCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHH
Confidence            9887664211  11  23578999999999999999887777888888888888878899999998664 6889999999


Q ss_pred             HHHHHHHHHHHhc
Q 022555          281 DVEKIESFMRERN  293 (295)
Q Consensus       281 Dl~~ae~ll~~r~  293 (295)
                      ||+.|++++++|.
T Consensus       239 dl~~a~~~~~~r~  251 (252)
T 3oam_A          239 DLEVVRRIVAERA  251 (252)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999999873

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=100.00  E-value=6.4e-35  Score=255.23  Aligned_cols=238  Identities=36%  Similarity=0.640  Sum_probs=183.1

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||.|+|||+|+|++++|+|||+|+++++.+++.+++|+|+++++++.++++++++.++.+++...+++.++
T Consensus         1 m~~~aiIlA~G~~~R~~~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~   80 (245)
T 1h7e_A            1 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRL   80 (245)
T ss_dssp             CCEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHH
T ss_pred             CCeEEEEEcCCcCCCCCCCcccccCCchHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHcCCeEEeCCCccCCcHHHH
Confidence            67889999999999999999999999999999999999886459999999988888888888898877654555677777


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ..++..+  +.+.+++++||+||+++++++++++.+.++  .+.++.+  .++.+.+..+|..++++.+++|++..|.++
T Consensus        81 ~~~~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  156 (245)
T 1h7e_A           81 VEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC--HAISAAEAAEPSTVKVVVNTRQDALYFSRS  156 (245)
T ss_dssp             HHHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE--EEECHHHHTCTTSCEEEECTTCBEEEEESS
T ss_pred             HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe--ecCCHHHhcCCCCcEEEECCCCcEEEeecC
Confidence            7888877  358999999999999999999999988764  2333332  333111223566777666788999888876


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI  285 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a  285 (295)
                      +.+..|+.   ...+.+.+.|+|+|+++.|..+......+++.+|.+..+.++..|.++.+++++..|+|||||+||+.|
T Consensus       157 ~~~~~r~~---~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a  233 (245)
T 1h7e_A          157 PIPYPRNA---EKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKV  233 (245)
T ss_dssp             CSSCCTTG---GGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHH
T ss_pred             CCCCCccc---ccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHH
Confidence            54322210   013467899999999998876544444445555554333334578999999998999999999999999


Q ss_pred             HHHHHHh
Q 022555          286 ESFMRER  292 (295)
Q Consensus       286 e~ll~~r  292 (295)
                      +++++++
T Consensus       234 ~~~l~~~  240 (245)
T 1h7e_A          234 RALMAQE  240 (245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=100.00  E-value=7.2e-35  Score=257.90  Aligned_cols=242  Identities=43%  Similarity=0.698  Sum_probs=181.8

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||.|+||++|+|++++|+|||+|+++++.+++ +++|+|+++++++.++++++++.++.+++...+++.++
T Consensus         1 m~~~aiIlA~G~g~R~~~K~l~~~~gkpli~~~l~~l~~~~-~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~   79 (262)
T 1vic_A            1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERL   79 (262)
T ss_dssp             -CCEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHH
T ss_pred             CCcEEEEEcCCCCCCCCCCccccCCCeEHHHHHHHHHHhCC-CceEEEECCcHHHHHHHHhcCCEEEECCccccCChHHH
Confidence            56789999999999999999999999999999999999885 69999999988888888888888877654556677666


Q ss_pred             HHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCC-CCCCCCCceEEEECCCCeEEEeec
Q 022555          128 NEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       128 ~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~-~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      ..++..+.. +.+.+++++||+||+++++++++++.+.++ .+.++  .+.++.. ++..+|.+++++.+++|++..|.+
T Consensus        80 ~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~v~~f~~  157 (262)
T 1vic_A           80 AEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMAS--LAVKIHDAEELFNPNAVKVLTDKDGYVLYFSR  157 (262)
T ss_dssp             HHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEE--EEEECCCHHHHTCTTSCEEEECTTSBEEEEES
T ss_pred             HHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEE--EEEecCCHHHhcCCCceEEEECCCCCEeeeec
Confidence            666666532 357899999999999999999999988653 34333  2344421 122345667766688899999988


Q ss_pred             CCCCCCCCCCC-------CCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcC
Q 022555          205 GLIPYNKSGKV-------NPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAH  274 (295)
Q Consensus       205 ~~i~~~r~~~~-------~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~i  274 (295)
                      +++|++|+. +       ..++|  +..++|+|+|+++++..+....++.++..+.++++.++..|.+|.+++++ ..|+
T Consensus       158 ~~~~~~r~~-~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~~~~~~~~~  236 (262)
T 1vic_A          158 SVIPYDRDQ-FMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAV  236 (262)
T ss_dssp             SCSSCCHHH-HTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCC
T ss_pred             CCCCcCCcc-ccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEEEeCCCCCC
Confidence            765544432 1       11455  67899999999998876543333322222222233345579999999998 7999


Q ss_pred             CCCCHHHHHHHHHHHHHhc
Q 022555          275 GVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       275 dIdtpeDl~~ae~ll~~r~  293 (295)
                      |||||+||..|+.++++++
T Consensus       237 dI~tpeDl~~a~~~l~~~~  255 (262)
T 1vic_A          237 GVDTAEDLEKVRAILAANG  255 (262)
T ss_dssp             CCCSHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998875

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=100.00  E-value=6.6e-34  Score=246.97  Aligned_cols=232  Identities=36%  Similarity=0.587  Sum_probs=176.9

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHH
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC  127 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i  127 (295)
                      |++.+||||||.|+||+||+|++++|+|||+|+++++.++  +++|+|+++++++.++++++ +.++..++...+++.+.
T Consensus         1 m~~~aiIlA~G~g~R~~~K~l~~i~g~pli~~~l~~~~~~--~~~i~v~~~~~~i~~~~~~~-~~~~~~~~~~~~g~~~~   77 (234)
T 2y6p_A            1 MRRAVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKT--GERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRV   77 (234)
T ss_dssp             -CEEEEEECCSCCTTTTTGGGCEETTEEHHHHHHHHHHTT--TSCEEEEESCHHHHHHHTTT-SEEEECCTTCCSHHHHH
T ss_pred             CceEEEEEcCCCCCCCCCCcceeECCEEHHHHHHHHHHHh--CCEEEEECChHHHHHHHHhc-eEEEECCcccccchHHH
Confidence            5788999999999999999999999999999999999876  89999999988888777666 77776655556777776


Q ss_pred             HHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555          128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (295)
Q Consensus       128 ~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i  207 (295)
                      ..+++.+  +.|.+++++||+||+++++++++++.+.++.+ .+++...  ...+..+|.+++++.+++|++..|.+++.
T Consensus        78 ~~~~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~g~v~~~~e~~~  152 (234)
T 2y6p_A           78 LYVVRDL--DVDLIINYQGDEPFVYEEDIKLIFRELEKGER-VVTLARK--DKEAYERPEDVKVVLDREGYALYFSRSPI  152 (234)
T ss_dssp             HHHHTTC--CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCS-EEEEEEE--CSGGGGCTTSCEEEECTTSBEEEEESSCC
T ss_pred             HHHHHhC--CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCC-eEEEecC--CHHHhcCCCceEEEEcCCCCEeeeecCCC
Confidence            6777666  35799999999999999999999999876543 3343322  11233456777766688899998888764


Q ss_pred             CCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHH
Q 022555          208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES  287 (295)
Q Consensus       208 ~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~  287 (295)
                      ++.|+.   ++.+.+.++|+|+|+++.|..+....+..++.+|.+.....+..|.++.+++.+++|+|||||+||..|+.
T Consensus       153 ~~~~~~---~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~  229 (234)
T 2y6p_A          153 PYFRKN---DTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEE  229 (234)
T ss_dssp             SCCSSC---CSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHH
T ss_pred             Cccccc---ccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHH
Confidence            322322   13356789999999999987655443333344444333334556899999999999999999999999998


Q ss_pred             HHH
Q 022555          288 FMR  290 (295)
Q Consensus       288 ll~  290 (295)
                      +++
T Consensus       230 ~~~  232 (234)
T 2y6p_A          230 KLK  232 (234)
T ss_dssp             HCC
T ss_pred             HHh
Confidence            864

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=99.97  E-value=9e-30  Score=220.88  Aligned_cols=213  Identities=19%  Similarity=0.199  Sum_probs=157.1

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCC----CCCCc
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRNG  123 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~----~~~g~  123 (295)
                      |++.+||||||+|+||++|+|++++|+|||+|+++++++++.+++|+|+++++++.+++++++++++.+++    ...++
T Consensus         2 ~~~~aiIlA~G~s~R~~~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~   81 (229)
T 1qwj_A            2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSSTS   81 (229)
T ss_dssp             CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCCH
T ss_pred             CcEEEEEEcCCCCCCCCCcccceECCEEHHHHHHHHHHhCCCcCEEEEECChHHHHHHHHHcCCEEEeChhhhcCCCCcH
Confidence            67899999999999999999999999999999999999886579999999988888888888998877652    34456


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      +.++..|+..+. +.|.+++++||+||+++++++++++.+.++ .+.++++.  +.     .+|..+++ .+  +. ..|
T Consensus        82 ~~~v~~al~~~~-~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~--~~-----~~p~~~~v-~~--~~-~~~  149 (229)
T 1qwj_A           82 LDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV--RR-----HQFRWSEI-QK--GV-REV  149 (229)
T ss_dssp             HHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE--EE-----CCCEECCC-CS--ST-TCC
T ss_pred             HHHHHHHHHhcC-CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEe--ec-----cChhHhhc-cc--cc-ccc
Confidence            678888988773 468999999999999999999999988754 34444432  22     23444433 22  32 113


Q ss_pred             ecCCCCCC--CCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCC
Q 022555          203 SRGLIPYN--KSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVD  277 (295)
Q Consensus       203 ~~~~i~~~--r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idId  277 (295)
                      .+..+++.  |+  ++++.|  +..|+|+|+|+++.|.                   ..+..|.++.++..+ .+|+|||
T Consensus       150 ~~~~~~~~~~~~--~~~~~~~~~~~n~giY~~~~~~l~-------------------~~~~~g~~~~~~~~~~~~~~dId  208 (229)
T 1qwj_A          150 TEPLNLNPAKRP--RRQDWDGELYENGSFYFAKRHLIE-------------------MGYLQGGKMAYYEMRAEHSVDID  208 (229)
T ss_dssp             CCBSSSBTTBCC--CTTTSCCEEEEEEEEEEEEHHHHH-------------------TTCSSCSSEEEEECCGGGCCCHH
T ss_pred             cccccccccccc--CCCCCCceEEEeeEEEEEEHHHhc-------------------cccccCCeEEEEECCcccccCCC
Confidence            33223322  11  234443  4669999999998761                   112245666553544 6899999


Q ss_pred             CHHHHHHHHHHHHHhc
Q 022555          278 APEDVEKIESFMRERN  293 (295)
Q Consensus       278 tpeDl~~ae~ll~~r~  293 (295)
                      ||+||..|+.++++.+
T Consensus       209 t~~Dl~~a~~~~~~~~  224 (229)
T 1qwj_A          209 VDIDWPIAEQRVLRFG  224 (229)
T ss_dssp             HHCSHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999998765

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=99.97  E-value=1.8e-29  Score=219.36  Aligned_cols=213  Identities=23%  Similarity=0.303  Sum_probs=159.0

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHH---HHHHHcCCeEEeCCCCCCC
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~---~~~~~~~~~v~~~~~~~~g  122 (295)
                      ++.+||||||+|+||+   ||+|++++|+|||+|+++++.+++.+++|+|+++++++.   +.+.. ++.++..   ...
T Consensus         7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~v~~v~g---g~~   82 (231)
T 3q80_A            7 EVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-RAMIVAG---GSN   82 (231)
T ss_dssp             CEEEEEECCCCCTTTCSSSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-GCEEEEC---CSS
T ss_pred             ceEEEEECCCCCccCCCCCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-CeEEEcC---CCc
Confidence            4789999999999997   799999999999999999999887799999999876543   33322 4554432   123


Q ss_pred             cHHHHHHHHHHcccc--CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          123 GTERCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       123 ~~~~i~~al~~~~~~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      ...++++|+..+...  .+++++++||+||+++++|+++++.+.++.++++.+  .++.       ++++. .+++|.+.
T Consensus        83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~--~p~~-------dt~~~-~~~~g~v~  152 (231)
T 3q80_A           83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPV--LPLS-------DTIKA-VDANGVVL  152 (231)
T ss_dssp             HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEE--ECCS-------SCEEE-ECTTSBEE
T ss_pred             hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEE--Eecc-------CCEEE-EcCCCcEE
Confidence            357889999888532  589999999999999999999999988634554433  3442       34654 56778765


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC--CCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP--TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~--~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId  277 (295)
                      ..     + +|+..+..|+|       |+|+.+.|... .....  ..+..+|....  +...|.+|.+++++..+++||
T Consensus       153 ~~-----~-~r~~l~~~qTP-------q~F~~~~L~~a~~~~~~~n~~~~~TD~~~~--~~~~g~~v~~v~g~~~n~kIt  217 (231)
T 3q80_A          153 GT-----P-ERAGLRAVQTP-------QGFTTDLLLRSYQRGSLDLPAAEYTDDASL--VEHIGGQVQVVDGDPLAFKIT  217 (231)
T ss_dssp             EC-----C-CGGGEEEECSC-------EEEEHHHHHHHHHHHTC-----CCSSSHHH--HHHTTCCCEEEECCGGGCCCC
T ss_pred             Ee-----c-chhheEEEcCC-------cEEEHHHHHHHHHHHHhhcCCCCCCcHHHH--HHHcCCcEEEEECCccccCcC
Confidence            32     2 67777788899       99999988764 33322  13455665421  223799999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 022555          278 APEDVEKIESFMR  290 (295)
Q Consensus       278 tpeDl~~ae~ll~  290 (295)
                      ||+||..|+.+++
T Consensus       218 ~p~Dl~~ae~~l~  230 (231)
T 3q80_A          218 TKLDLLLAQAIVR  230 (231)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999999985

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=99.97  E-value=9.6e-30  Score=220.21  Aligned_cols=214  Identities=18%  Similarity=0.218  Sum_probs=155.1

Q ss_pred             CceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCC----CCCCc
Q 022555           48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSE----SCRNG  123 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~----~~~g~  123 (295)
                      |++.+||||||.|+||++|+|++++|+|||+|+++++.+++.+++|+|+++++++.++++++++.++.++.    ...+.
T Consensus         3 m~~~aiIlA~G~g~R~~~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~   82 (228)
T 1ezi_A            3 KQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASS   82 (228)
T ss_dssp             CEEEEEEECCSSCSSSTTTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHTTCEEEECCC------CHH
T ss_pred             CceEEEEecCCCCCCCCCcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCEEEeCchHHcCCCCCh
Confidence            67889999999999999999999999999999999999886689999999988888888888888766543    22233


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      ..++..|+..+..+.|.+++++||+||+++++++++++.+.++ .+.++.+  .+..    ..|....+ ++++|++..|
T Consensus        83 ~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~--~~~~----~~p~~~~~-~~~~g~~~~~  155 (228)
T 1ezi_A           83 ISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA--CPME----HHPLKTLL-QINNGEYAPM  155 (228)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE--EECS----SCTTSCEE-ECC--CEEES
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE--EecC----CCcceeeE-EcCCCcEeec
Confidence            4678889988742357899999999999999999999877643 2444333  3432    12333433 4778888877


Q ss_pred             ec-CCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCC
Q 022555          203 SR-GLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDA  278 (295)
Q Consensus       203 ~~-~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdt  278 (295)
                      .+ +.. +.    +.++.+  +..+.|+|+|+.+.|....                .+  .|.++..+..+ ..|+||||
T Consensus       156 ~~~~~~-~~----~~~~~~~~~~~~~giy~~~~~~l~~~~----------------~~--~g~~v~~~~~~~~~~~dIdt  212 (228)
T 1ezi_A          156 RHLSDL-EQ----PRQQLPQAFRPNGAIYINDTASLIANN----------------CF--FIAPTKLYIMSHQDSIDIDT  212 (228)
T ss_dssp             SCHHHH-TC----CGGGSCCEEEEEEEEEEEEHHHHHHHT----------------SS--CCSSCEEEECCTGGGCCCCS
T ss_pred             cccccc-cC----CcccCchhheeeeEEEEEeHHHHhhCC----------------cc--cCCceEEEEeCcccccCCCC
Confidence            44 211 11    122222  3567899999998765321                11  25666666655 58999999


Q ss_pred             HHHHHHHHHHHHH
Q 022555          279 PEDVEKIESFMRE  291 (295)
Q Consensus       279 peDl~~ae~ll~~  291 (295)
                      |+||+.|+.++++
T Consensus       213 peDl~~a~~~l~~  225 (228)
T 1ezi_A          213 ELDLQQAENILNH  225 (228)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=99.96  E-value=2.6e-29  Score=220.42  Aligned_cols=219  Identities=20%  Similarity=0.254  Sum_probs=151.0

Q ss_pred             CCceEEEEEcCCCCCCCC----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCC--eE-EeC
Q 022555           47 RSRVVGIIPARFASSRFE----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGA--DV-IMT  116 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~--~v-~~~  116 (295)
                      ||++.+||||||+|+||+    ||+|++++|+|||+|+++++.+++.+++|+|+++++.   +.+.++.++.  .+ +..
T Consensus         1 M~~~~aIIlAaG~g~Rm~~~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (246)
T 3f1c_A            1 MSLIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVVIE   80 (246)
T ss_dssp             -CCEEEEEECC-----C-CSSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEEEE
T ss_pred             CCccEEEEECCccccccCCCCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            567899999999999996    5999999999999999999998866999999998653   3344544431  12 222


Q ss_pred             CCCCCCcHHHHHHHHHHccc-----cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEE
Q 022555          117 SESCRNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC  191 (295)
Q Consensus       117 ~~~~~g~~~~i~~al~~~~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v  191 (295)
                      .  ..+...+++.|+..+..     +.+.+++++||+||+++++++++++.+.+. ++.+++  .++.       ++++ 
T Consensus        81 ~--~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~-~a~i~~--~~~~-------d~i~-  147 (246)
T 3f1c_A           81 G--GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALET-GAVDTV--IEAL-------DTIV-  147 (246)
T ss_dssp             C--CSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHT-SEEEEE--EECS-------SCEE-
T ss_pred             C--CCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhc-CCEEEE--Eecc-------ceEE-
Confidence            1  22445678889988753     258999999999999999999999999875 344333  3332       2443 


Q ss_pred             EECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCC-CCCcccchhhhhhhhhCCceEEEEEe
Q 022555          192 VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP-TPLQLEEDLEQLKVLENGYKMKVIKV  269 (295)
Q Consensus       192 ~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~  269 (295)
                      ..++++.+..+      .+|+..+..|+|       |+|+.+.|... ..+.. .++..+|...  .+...|.+|.++++
T Consensus       148 ~~~~~~~v~~~------~~r~~l~~~qtp-------q~f~~~~L~~a~~~~~~~~~~~~TD~~~--~~~~~g~~v~~v~~  212 (246)
T 3f1c_A          148 ESSNHEVITDI------PVRDHMYQGQTP-------QSFNMKKVFNHYQNLTPEKKQILTDACK--ICLLAGDDVKLVKG  212 (246)
T ss_dssp             ECSSSSBCCBC------CCGGGEEEEEEE-------EEEEHHHHHHHHHTSCHHHHHHCCCHHH--HHHHTTCCCEEEEC
T ss_pred             EecCCCeEEEe------cChHHhhhhcCC-------ceeEHHHHHHHHHHHHHcCCCccCcHHH--HHHHcCCCEEEEeC
Confidence            23445554321      245544455566       89999887753 33311 1233455432  12347999999999


Q ss_pred             cCCcCCCCCHHHHHHHHHHHHHhc
Q 022555          270 DHEAHGVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       270 ~~~~idIdtpeDl~~ae~ll~~r~  293 (295)
                      +..|+|||||+||..|+.++++|.
T Consensus       213 ~~~~~~Itt~~Dl~~ae~~l~~~~  236 (246)
T 3f1c_A          213 EIFNIKITTPYDLKVANAIIQERI  236 (246)
T ss_dssp             CTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred             CCCccCcCCHHHHHHHHHHHhccc
Confidence            999999999999999999999873

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.95  E-value=1e-27  Score=213.94  Aligned_cols=227  Identities=11%  Similarity=0.097  Sum_probs=162.4

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-----------
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-----------  108 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~-----------  108 (295)
                      |.+.+||||||.|+||+      ||+|++++|+|||+|+++++.+++ +++|+|+++  .+.+.+++..           
T Consensus         1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~   79 (281)
T 3juk_A            1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAG-CEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT   79 (281)
T ss_dssp             CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHT-CCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred             CceEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCC-CCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence            45679999999999996      599999999999999999999885 999999996  3556555432           


Q ss_pred             -------------cCCeEEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHH----HHHHHHHHHHhCCCcE
Q 022555          109 -------------FGADVIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPE----IIDGVVKALQAAPDAV  170 (295)
Q Consensus       109 -------------~~~~v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~----~i~~li~~~~~~~d~~  170 (295)
                                   +++.+.+ .+....|...+++.|+..+.  .+.+++++||+ +++.+    .++++++.+.+....+
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~--~~~~lv~~~D~-~~~~~~~~~~l~~l~~~~~~~~~~~  156 (281)
T 3juk_A           80 NKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG--NEPFAVILADD-LCISHDHPSVLKQMTSLYQKYQCSI  156 (281)
T ss_dssp             CHHHHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTE-EEECTTSCCHHHHHHHHHHHHCSCE
T ss_pred             cchhhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcC--CCCEEEEeCCe-eccCccchHHHHHHHHHHHHcCCCE
Confidence                         2355532 22233455577888988884  46799999999 77777    7999999887643344


Q ss_pred             EEEeeeeCCCCCCCCCCceEE-EECC--CC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC--
Q 022555          171 FSTAVTSLKPEDAFDPNRVKC-VVDN--HG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP--  243 (295)
Q Consensus       171 v~v~~~~~~~~~~~~p~~~~v-~~d~--~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~--  243 (295)
                      +++  .++..   .+|..+++ ..++  +|  ++..|.|++.+       .....+.+++|+|+|++++|..+....+  
T Consensus       157 v~~--~~~~~---~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~-------~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~  224 (281)
T 3juk_A          157 VAI--EEVAL---EEVSKYGVIRGEWLEEGVYEIKDMVEKPNQ-------EDAPSNLAVIGRYILTPDIFEILSETKPGK  224 (281)
T ss_dssp             EEE--EECCT---TTGGGSEEEEEEEEETTEEEEEEEEESCCT-------TTCSCSEEEEEEEEECTTHHHHHHTCCCCG
T ss_pred             EEE--EEech---hhcccCCEEEeccCCCCceEEeEEEECcCC-------CCCCcceeEEEEEEECHHHHHHHHhcCCCC
Confidence            443  33321   12334433 3454  67  89999888532       1112468899999999999876655432  


Q ss_pred             -CCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhc
Q 022555          244 -TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       244 -~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~  293 (295)
                       .+++++|.+.  .++..| ++.+++.+++|+|||||+||..|+..+...+
T Consensus       225 ~~e~~l~d~i~--~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~~  272 (281)
T 3juk_A          225 NNEIQITDALR--TQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKKR  272 (281)
T ss_dssp             GGSCCHHHHHH--HHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHHH
T ss_pred             CCceeHHHHHH--HHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhch
Confidence             2344444432  233455 8999998899999999999999999887764

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.95  E-value=8.2e-27  Score=207.02  Aligned_cols=221  Identities=18%  Similarity=0.184  Sum_probs=158.7

Q ss_pred             eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeC-
Q 022555           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMT-  116 (295)
Q Consensus        50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~-  116 (295)
                      +.+||||||.|+||+      ||+|++++|+|||+|+++++.+++ +++|+|+++.   +++.+++.   .+++.+.+. 
T Consensus        25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g-~~~iivv~~~~~~~~~~~~~~~~~~~~~~i~~~~  103 (269)
T 4ecm_A           25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCD-ITDIMIITGKEHMGDVVSFLGSGQEFGVSFTYRV  103 (269)
T ss_dssp             EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEE
T ss_pred             cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCC-CCEEEEECChhhHHHHHHHHhhccccCceEEEee
Confidence            679999999999996      599999999999999999999985 9999999983   45555554   245666432 


Q ss_pred             CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCC
Q 022555          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH  196 (295)
Q Consensus       117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~  196 (295)
                      +....|...++..++..+.  .+.+++++||+|+.  .+++++++.+.+.. +.+++.+.++.     +|..++++..++
T Consensus       104 ~~~~~G~~~al~~a~~~~~--~~~~lv~~~D~~~~--~~l~~l~~~~~~~~-~~~~~~~~~~~-----~~~~~g~v~~d~  173 (269)
T 4ecm_A          104 QDKAGGIAQALGLCEDFVG--NDRMVVILGDNIFS--DDIRPYVEEFTNQK-EGAKVLLQSVD-----DPERFGVANIQN  173 (269)
T ss_dssp             CSSCCCHHHHHHTTHHHHT--TSEEEEEETTEEES--SCSHHHHHHHHTSS-SSEEEEEEECS-----CGGGSEEEEEET
T ss_pred             CCccCcHHHHHHHHHHhcC--CCcEEEEeCCccCc--cCHHHHHHHHHhcC-CCeEEEEEECC-----CCCCceEEEEcC
Confidence            2233344567888888774  57899999999874  67999999887542 22233334442     333444443336


Q ss_pred             CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcccchhhhhhhhhCCceEEEEEecCCc
Q 022555          197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVIKVDHEA  273 (295)
Q Consensus       197 g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~  273 (295)
                      |++..|.+++.         ....+.+++|+|+|++++|..+....+   .+++.++.+.  .++..| ++.+++.+++|
T Consensus       174 g~v~~~~ekp~---------~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~--~l~~~g-~v~~~~~~~~~  241 (269)
T 4ecm_A          174 RKIIEIEEKPK---------EPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINN--WYLKRG-VLTYNEMSGWW  241 (269)
T ss_dssp             TEEEEEEESCS---------SCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHH--HHHHTT-CEEEEECCSCE
T ss_pred             CEEEEEEECCC---------CCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHH--HHHHcC-CEEEEEeCCEE
Confidence            89999888742         112468899999999999876654432   2344444432  233456 78888888899


Q ss_pred             CCCCCHHHHHHHHHHHHHhc
Q 022555          274 HGVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~~r~  293 (295)
                      +|||||+||..|+.++.+.+
T Consensus       242 ~dIgt~~dl~~a~~~l~~~~  261 (269)
T 4ecm_A          242 TDAGTHVSLQRANALARDIN  261 (269)
T ss_dssp             EECSSHHHHHHHHHHTTTCC
T ss_pred             EeCCCHHHHHHHHHHHHhcc
Confidence            99999999999999987653

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.95  E-value=1.5e-26  Score=219.56  Aligned_cols=226  Identities=15%  Similarity=0.186  Sum_probs=162.0

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |++.+||||||.|+||+   ||+|++++|+|||+|+++++.+.+ +++|+|+++.  +++.++++..++.++..+ ...|
T Consensus         7 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~i~~~~~~~~~~~v~~~-~~~g   84 (459)
T 4fce_A            7 SSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKLG-AQHVHLVYGHGGELLKKTLADPSLNWVLQA-EQLG   84 (459)
T ss_dssp             CCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHHT-CSCEEEEESSCHHHHHHHC-----CEEECS-SCCC
T ss_pred             CcceEEEECCCCCccCCCCCCcccCeeCCeeHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCcEEEeCC-CCCC
Confidence            57899999999999997   599999999999999999999885 9999999974  566666655666666543 3445


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEE
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIY  201 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~  201 (295)
                      ...+++.|++.+. +.+.+++++||+||+++++++++++.+.+ .+..+.  ..+..     +|..+ .+..+ +|++..
T Consensus        85 ~~~~i~~~~~~~~-~~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~--~~~~~-----~~~~~g~v~~~-~g~v~~  154 (459)
T 4fce_A           85 TGHAMQQAAPHFA-DDEDILMLYGDVPLISVDTLQRLLAAKPE-GGIGLL--TVKLD-----NPSGYGRIVRE-NGDVVG  154 (459)
T ss_dssp             HHHHHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEEEE--EEECS-----CCTTSCEEEEE-TTEEEE
T ss_pred             cHHHHHHHHHhcC-CCCcEEEEeCCcccCCHHHHHHHHHHHhh-CCEEEE--EEecC-----CCCcccEEEeC-CCcEEE
Confidence            5678999998885 35899999999999999999999998765 343332  23332     22223 23344 789998


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCC----CCCCcccchhhhhhhhhCCceEEEEEecC--CcC
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLH----PTPLQLEEDLEQLKVLENGYKMKVIKVDH--EAH  274 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~----~~~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~i  274 (295)
                      +.+++.. .    ..+......++|+|+|+++.|..+. .+.    ..++..+|.+.  .+...|.++..++.++  .++
T Consensus       155 ~~ek~~~-~----~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~~~~~~~~~~~  227 (459)
T 4fce_A          155 IVEHKDA-S----DAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIA--LAHADGKKIATVHPTRLSEVE  227 (459)
T ss_dssp             EECGGGC-C----TTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHH--HHHHTTCCEEEECCSSGGGGC
T ss_pred             EEECCCC-C----hHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHH--HHHHCCCeEEEEEcCCHHHhh
Confidence            8776421 0    1122346889999999999875432 221    22334444432  3345788999999874  568


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 022555          275 GVDAPEDVEKIESFMRER  292 (295)
Q Consensus       275 dIdtpeDl~~ae~ll~~r  292 (295)
                      |||||+||+.|+++++.+
T Consensus       228 ~I~tp~Dl~~ae~~l~~~  245 (459)
T 4fce_A          228 GVNNRLQLSALERVFQTE  245 (459)
T ss_dssp             CCSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998875

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.94  E-value=9.7e-26  Score=202.65  Aligned_cols=221  Identities=18%  Similarity=0.225  Sum_probs=156.1

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCeEEe
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM  115 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~v~~  115 (295)
                      |++.+||||||.|+||+      ||+|++++|+|||+|+++++..++ +++|+|++.   .+.+.+++.+   +++++.+
T Consensus         1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~   79 (293)
T 1fxo_A            1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAG-IREILIISTPQDTPRFQQLLGDGSNWGLDLQY   79 (293)
T ss_dssp             -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred             CCceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCC-CCEEEEEeccccHHHHHHHHhcccccCceEEE
Confidence            56789999999999997      899999999999999999999885 999987763   2456666653   5766532


Q ss_pred             -CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEE-E
Q 022555          116 -TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKC-V  192 (295)
Q Consensus       116 -~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v-~  192 (295)
                       .++...|...++..|+..+.  .+.++++.||+||.+ ..+.++++.+.+. .++.+  .+.++     .+|..+++ .
T Consensus        80 ~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v-----~dp~~~g~v~  149 (293)
T 1fxo_A           80 AVQPSPDGLAQAFLIGESFIG--NDLSALVLGDNLYYG-HDFHELLGSASQRQTGASV--FAYHV-----LDPERYGVVE  149 (293)
T ss_dssp             EECSSCCCGGGHHHHTHHHHT--TSEEEEEETTEEEEC-TTHHHHHHHHHTCCSSEEE--EEEEC-----SCGGGSEEEE
T ss_pred             eeCCCCCCHHHHHHHHHHHhC--CCCEEEEECChhccC-ccHHHHHHHHHhcCCCcEE--EEEEC-----CCcccCcEEE
Confidence             22233344567888888874  467888889999987 5899999988643 33333  23344     23444543 4


Q ss_pred             ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEe
Q 022555          193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKV  269 (295)
Q Consensus       193 ~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~  269 (295)
                      .|++|++..|.++|. .+        ..++.++|+|+|+++++..+..+.++   +++.+|.+.  .++..| ++.++..
T Consensus       150 ~d~~g~v~~~~ekp~-~~--------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v~~~  217 (293)
T 1fxo_A          150 FDQGGKAISLEEKPL-EP--------KSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNR--AYLERG-QLSVEIM  217 (293)
T ss_dssp             ECTTSCEEEEEESCS-SC--------SSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHH--HHHHTT-CEEEEEC
T ss_pred             ECCCCcEEEEEECCC-CC--------CCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHH--HHHhcC-CeEEEEe
Confidence            678899999988752 11        13588999999999998766544332   344444332  234455 4555555


Q ss_pred             c-C-CcCCCCCHHHHHHHHHHHHH
Q 022555          270 D-H-EAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       270 ~-~-~~idIdtpeDl~~ae~ll~~  291 (295)
                      . + .|+|||||+||..|+.+++.
T Consensus       218 ~~g~~w~Digt~edl~~a~~~~~~  241 (293)
T 1fxo_A          218 GRGYAWLDTGTHDSLLEAGQFIAT  241 (293)
T ss_dssp             CTTSEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEcCCCHHHHHHHHHHHHH
Confidence            4 5 49999999999999988864

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=99.94  E-value=2.2e-25  Score=191.69  Aligned_cols=216  Identities=21%  Similarity=0.283  Sum_probs=146.9

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc---CCeEEeCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF---GADVIMTSESCR  121 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~---~~~v~~~~~~~~  121 (295)
                      |++.+||||||+|+||+   +|+|++++|+|||+|+++++.+++.+++|+|+++++....+.+..   ++.++..   ..
T Consensus         1 m~~~~vIlA~G~g~R~~~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~v~~~~~---~~   77 (223)
T 2xwl_A            1 MATVAVVPAAGSGERLRAGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFGGEDSVIVSG---GV   77 (223)
T ss_dssp             -CEEEEEECCCCCGGGTSSSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTCBTTEEEEEC---CS
T ss_pred             CceEEEEECCccCcccCCCCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhccCCeEEEcC---CC
Confidence            56889999999999998   899999999999999999999875589999999875433233222   3333322   23


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      +...++..|+..+. +.+.+++++||+||+++++++++++.+.+..+..+.+  .++.     +  .++. .+++|++..
T Consensus        78 ~~~~~i~~al~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~i~~--~~~~-----d--~~~~-~~~~g~~~~  146 (223)
T 2xwl_A           78 DRTESVALALEAAG-DAEFVLVHDAARALTPPALIARVVAALKEGHSAVVPG--LAPA-----D--TIKA-VDANGAVLG  146 (223)
T ss_dssp             SHHHHHHHHHTTCT-TCSEEEECCTTCTTCCHHHHHHHHHHHHHTCSEEEEE--ECCS-----S--CEEE-ECTTSBEEE
T ss_pred             CHHHHHHHHHHhcC-CCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEE--Eecc-----c--ceEE-EcCCCcEEe
Confidence            45678889998873 3578999999999999999999999882223443332  3331     2  2333 366788765


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHH
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPED  281 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeD  281 (295)
                      +.+++      ..+...+|       |+|++..+........ +...++...  .+...|.++..++.+..|+|||||+|
T Consensus       147 ~~e~~------~l~~~~~p-------~~f~~~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~v~~~~~~~~~~dIdtpeD  210 (223)
T 2xwl_A          147 TPERA------GLRAVQTP-------QGFHADVLRRAYARAT-AGGVTDDAS--LVEQLGTPVQIVDGDPLAFKITTPLD  210 (223)
T ss_dssp             CCCGG------GEEEECSC-------EEEEHHHHHHHHTTCC-SCCCCCHHH--HHHTTTCCCEEEECCGGGCCCCSHHH
T ss_pred             ecChH------HheeeeCC-------cccCHHHHHHHHHHhh-CCCCccHHH--HHHHcCCCEEEEECCcccccccCHHH
Confidence            43321      00011223       8899887765332111 111222221  11235778888888788999999999


Q ss_pred             HHHHHHHHHHhc
Q 022555          282 VEKIESFMRERN  293 (295)
Q Consensus       282 l~~ae~ll~~r~  293 (295)
                      |..|+.+++++.
T Consensus       211 l~~a~~~l~~~~  222 (223)
T 2xwl_A          211 LVLAEAVLAHHH  222 (223)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhhcc
Confidence            999999998763

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=99.94  E-value=2.6e-26  Score=198.31  Aligned_cols=218  Identities=18%  Similarity=0.200  Sum_probs=142.1

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH--HHH-HHHHcCCeEEeCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAE-CCQQFGADVIMTSESCR  121 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~--i~~-~~~~~~~~v~~~~~~~~  121 (295)
                      |++.+||||||.|+||+   +|+|++++|+|||+|+++++.+++++++|+|+++++.  +.+ +...++..+.+... ..
T Consensus         3 ~~~~aiIlAaG~g~R~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~v~~~~~-~~   81 (228)
T 2yc3_A            3 KSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIP-GK   81 (228)
T ss_dssp             TCEEEEEECCCCC-------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTSSSEEEEECC-CS
T ss_pred             cceEEEEECCccccccCCCCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhCCCcEEEECC-CC
Confidence            46889999999999998   8999999999999999999998766899999998643  322 22234444422211 24


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      +...+++.|+..+..+.+.++++++|+||+++++++.+++.+.+. ++.+.  +.+..       +.++. .+++|.+..
T Consensus        82 ~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~-~~~i~--~~~~~-------~~~~~-~~~~~~v~~  150 (228)
T 2yc3_A           82 ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAV-GAAVL--GVPAK-------ATIKE-VNSDSLVVK  150 (228)
T ss_dssp             SHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHH-SEEEE--EEECC-------SCCCC-BCTTSCBCC
T ss_pred             CHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhc-CceEE--EEecc-------ceEEE-EcCCCceEE
Confidence            566788999988753457899999999999999999999988754 33322  22321       12322 344554431


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHH
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE  280 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpe  280 (295)
                         .  + +|+       +.......|+|+.+.|.. +.......++.++....  +...|.++..++.+..|+|||||+
T Consensus       151 ---~--~-~~~-------~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~--l~~~g~~v~~~~~~~~~~dIdtpe  215 (228)
T 2yc3_A          151 ---T--L-DRK-------TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSI--VEYLKHPVYVSQGSYTNIKVTTPD  215 (228)
T ss_dssp             ---C--C-SCC-------CCEEEEEEEEECHHHHHHHHHHHHHHTCCCCSTTHH--HHHSSSCCEEEECCTTCCCCCSHH
T ss_pred             ---e--c-Ccc-------ceEEEeCCcEEEHHHHHHHHHHHHhcCCCcccHHHH--HHHcCCceEEEeCCccccCcCCHH
Confidence               1  1 221       122223479999876654 32211112333443221  234688888777777899999999


Q ss_pred             HHHHHHHHHHHh
Q 022555          281 DVEKIESFMRER  292 (295)
Q Consensus       281 Dl~~ae~ll~~r  292 (295)
                      ||+.|++++++|
T Consensus       216 Dl~~a~~~l~~~  227 (228)
T 2yc3_A          216 DLLLAERILSED  227 (228)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHhhc
Confidence            999999998764

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.94  E-value=1.7e-25  Score=201.95  Aligned_cols=239  Identities=10%  Similarity=0.076  Sum_probs=162.5

Q ss_pred             CCCceEEEEEcCCCCCCCC-Ccccccc--CCcchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH---cCCe--EE
Q 022555           46 FRSRVVGIIPARFASSRFE-GKPLVNI--LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ---FGAD--VI  114 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~-~K~l~~i--~gkpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~---~~~~--v~  114 (295)
                      .||++.+||||||.|+||+ +|+|+++  +|+|||+|+++++.++ ++++|+|+++..   .+.+++..   .+..  ++
T Consensus         2 ~~m~~~~vIlAaG~g~R~~~~K~l~~ig~~g~pli~~~l~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~i~~~   80 (303)
T 3pnn_A            2 NAMKPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIRA-GFGRLVFVIRHSFEKEFREKILTKYEGRIPVELV   80 (303)
T ss_dssp             -CCCCEEEEECTTCBCTTSSBCCCCCCSTTSCCHHHHHHHHHHHH-TCCEEEEEECGGGHHHHHHHTHHHHTTTSCEEEE
T ss_pred             CCCceEEEEECCCCcccCCCCceEeEcCCCCeeHHHHHHHHHHHC-CCCeEEEEcCchHHHHHHHHHHHHhccCCcEEEE
Confidence            4678899999999999995 7999999  6999999999999887 599999999843   44444432   1333  33


Q ss_pred             eCCC--------------CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEeeeeC
Q 022555          115 MTSE--------------SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA--PDAVFSTAVTSL  178 (295)
Q Consensus       115 ~~~~--------------~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~d~~v~v~~~~~  178 (295)
                      ..+.              ...|...+++.|+..+   .+.+++++||. +++.+.++.+++.+.+.  .++.+++...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i---~~~~lV~~gD~-l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~  156 (303)
T 3pnn_A           81 FQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI---REPFAVINADD-FYGRNGFEVLARKLMTLEGKQGEYCMVGYRV  156 (303)
T ss_dssp             ECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC---CSCEEEEESSC-BCCHHHHHHHHHHHHTTTTCSSEEEEEEEEG
T ss_pred             ecccccccccccccccccccCCcHHHHHHHHHhc---CCCEEEEECCe-ecCHHHHHHHHHHHHHhccccCceEEEEEEC
Confidence            3321              1234445677777776   35789999999 77888899999988751  234445544444


Q ss_pred             CCCCCCCCCc---eEEEECCCCeEEEeecCCCCCCCCC----CCCC------CCCceEEEeEEEecHHHHhhccc-----
Q 022555          179 KPEDAFDPNR---VKCVVDNHGYAIYFSRGLIPYNKSG----KVNP------QFPYLLHLGIQSYDSNFLKIYPG-----  240 (295)
Q Consensus       179 ~~~~~~~p~~---~~v~~d~~g~v~~~~~~~i~~~r~~----~~~~------~~p~~~~~Giyif~~~~l~~~~~-----  240 (295)
                      .. ...+.+.   ..+..|++|++..|.|++.....+.    ...+      .....+++|+|+|++++|..+..     
T Consensus       157 ~~-~~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~~  235 (303)
T 3pnn_A          157 GN-TLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINF  235 (303)
T ss_dssp             GG-SCBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHHH
T ss_pred             CC-ccCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHHH
Confidence            21 0011111   1334677899999998863200000    0000      13468899999999999875532     


Q ss_pred             ------CCCCCCcccchhhhhhhhhCCc-eEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          241 ------LHPTPLQLEEDLEQLKVLENGY-KMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       241 ------~~~~~~~~~d~~~~~~~~~~G~-~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                            ....+++.+|.+.  .++..|. +|.+++.+++|+|||||+||..|++.+++.
T Consensus       236 l~~~~~~~~~e~~l~d~i~--~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~  292 (303)
T 3pnn_A          236 LNAHGQEPKSEFFIPFVVN--DLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLREL  292 (303)
T ss_dssp             HHHHTTCSSCCCCHHHHHH--HHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHH
T ss_pred             HHhcCCCcCCcEEhHHHHH--HHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHH
Confidence                  1123445555542  3455786 899999999999999999999999998765

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.94  E-value=3.6e-26  Score=205.61  Aligned_cols=231  Identities=10%  Similarity=0.111  Sum_probs=145.9

Q ss_pred             CCCCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH------
Q 022555           43 SKNFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ------  108 (295)
Q Consensus        43 ~~~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~------  108 (295)
                      ++...+.+.+||||||.|+||+      ||+|++++|+|||+|+++++.++ ++++|+|+++  .+.+.+++..      
T Consensus         8 ~~~~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~l~~   86 (297)
T 2ux8_A            8 SMTIKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEA-GIEQMIFVTGRGKSALEDHFDIAYELEA   86 (297)
T ss_dssp             --CCCCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHTSCCHHHHH
T ss_pred             cccccCccEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhhhhhhh
Confidence            4455566789999999999995      89999999999999999999988 4999999998  4666665432      


Q ss_pred             -----------------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC--HHHHHHHHHHHHhCCC
Q 022555          109 -----------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE--PEIIDGVVKALQAAPD  168 (295)
Q Consensus       109 -----------------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~--~~~i~~li~~~~~~~d  168 (295)
                                       .+..+ +..+....|...++..|+..+.  .+.+++++||+|+ +  +.+++++++.+.+...
T Consensus        87 ~l~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~l~~l~~~~~~~~~  163 (297)
T 2ux8_A           87 TMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVG--DEPFAVLLPDDFM-FGQPGCLKQMVDAYNKVGG  163 (297)
T ss_dssp             HHHTTTCCGGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHC--SSCEEEECTTEEE-ESSSCHHHHHHHHHHHHCS
T ss_pred             hhhhccchhhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcC--CCcEEEEeCCeec-CCChHHHHHHHHHHHhcCC
Confidence                             23344 2223333455567888888774  4789999999995 5  5789999998875433


Q ss_pred             cEEEEeeeeCCCCCCCCCCceEEE-ECC--CC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC
Q 022555          169 AVFSTAVTSLKPEDAFDPNRVKCV-VDN--HG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP  243 (295)
Q Consensus       169 ~~v~v~~~~~~~~~~~~p~~~~v~-~d~--~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~  243 (295)
                      ..+++  .++..   .++..++++ .++  +|  ++..|.+++.+       .....+.+++|+|+|++++|..+....+
T Consensus       164 ~~i~~--~~~~~---~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~-------~~~~~~~~~~Giyi~~~~~l~~l~~~~~  231 (297)
T 2ux8_A          164 NLICA--EEVPD---DQTHRYGIITPGTQDGVLTEVKGLVEKPAP-------GTAPSNLSVIGRYILQPEVMRILENQGK  231 (297)
T ss_dssp             EEEEE--C--------------CCCCCCBCSSEEEC---------------------CCCEEEEEEECTHHHHHHHHTC-
T ss_pred             CEEEE--EecCc---ccCCCCCeEEecccCCCceeEEEEEECCCC-------CCCCccEEEEEEEEECHHHHHHHHhhCC
Confidence            33333  22211   123334433 232  45  77777776521       0112357899999999998876554432


Q ss_pred             C---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          244 T---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       244 ~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      +   +++.++.+.  .++..| ++.+++.++.|+|||||+||..|+..+..+
T Consensus       232 ~~~~~~~l~d~i~--~l~~~~-~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~  280 (297)
T 2ux8_A          232 GAGGEIQLTDAMQ--RMIGDQ-PFHGVTFQGTRYDCGDKAGFIQANLAVALS  280 (297)
T ss_dssp             -------CCTTGG--GGTTTS-CEEEEECSSEEEETTSHHHHHHHHHHHHHH
T ss_pred             CCCCeeEHHHHHH--HHHhcC-CEEEEEecceEEeCCCHHHHHHHHHHHHhc
Confidence            2   334444443  233445 899999888999999999999999655443

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.94  E-value=3e-25  Score=200.03  Aligned_cols=218  Identities=13%  Similarity=0.128  Sum_probs=153.9

Q ss_pred             eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-------------
Q 022555           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------  108 (295)
Q Consensus        50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-------------  108 (295)
                      +.+||||||.|+||+      ||+|++++|+|||+|+++++.++ ++++|+|++++  +.+.+++..             
T Consensus         9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~   87 (302)
T 2e3d_A            9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVK   87 (302)
T ss_dssp             CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----
T ss_pred             cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccc
Confidence            469999999999996      89999999999999999999988 49999999985  566655532             


Q ss_pred             ------------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC----HH---HHHHHHHHHHhCCC
Q 022555          109 ------------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE----PE---IIDGVVKALQAAPD  168 (295)
Q Consensus       109 ------------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~----~~---~i~~li~~~~~~~d  168 (295)
                                  .++++ +..+....|...++..|+..+.  .+.+++++||+|+ +    +.   +++++++.+.+...
T Consensus        88 ~~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~--~~~~lv~~~D~~~-~~~~~~~~~~~l~~l~~~~~~~~~  164 (302)
T 2e3d_A           88 RQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVIL-DEYESDLSQDNLAEMIRRFDETGH  164 (302)
T ss_dssp             CHHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHC--SSCEEEECTTEEE-CTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcC--CCcEEEEcCCccc-cCccccchHHHHHHHHHHHHhcCC
Confidence                        24554 2233333455567888888874  4679999999997 5    45   89999998875433


Q ss_pred             cEEEEeeeeCCCCCCCCCCceEEEE-C----CCC---eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc
Q 022555          169 AVFSTAVTSLKPEDAFDPNRVKCVV-D----NHG---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG  240 (295)
Q Consensus       169 ~~v~v~~~~~~~~~~~~p~~~~v~~-d----~~g---~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~  240 (295)
                      .+++  +.++.     ++..++++. +    ++|   ++..|.+++.+       .....+.+++|+|+|++++|..+..
T Consensus       165 ~~i~--~~~~~-----~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~-------~~~~~~~~~~Giyi~~~~~l~~l~~  230 (302)
T 2e3d_A          165 SQIM--VEPVA-----DVTAYGVVDCKGVELAPGESVPMVGVVEKPKA-------DVAPSNLAIVGRYVLSADIWPLLAK  230 (302)
T ss_dssp             EEEE--EEECS-----CGGGSEEEECTTCCCCTTCEEEECEEEESCCT-------TTCSCSEEEEEEEEECTTHHHHHTC
T ss_pred             cEEE--EEEcc-----CCCCccEEEecccccCCCCceeEEEEEECCCC-------CccccceEEEEEEEECHHHHHHHHh
Confidence            3333  23331     223444443 2    466   78888887532       0112368899999999998876655


Q ss_pred             CCCC---CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHH
Q 022555          241 LHPT---PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF  288 (295)
Q Consensus       241 ~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~l  288 (295)
                      ..++   +++.++.+.  .++..| ++.+++.+++|+|||||+||..|+..
T Consensus       231 ~~~~~~~~~~l~d~i~--~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~  278 (302)
T 2e3d_A          231 TPPGAGDEIQLTDAID--MLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVE  278 (302)
T ss_dssp             CCC----CCCHHHHHH--HHHHHS-CEEEEECCSCEEECSSHHHHHHHHHH
T ss_pred             hCCCCCCceehHHHHH--HHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHH
Confidence            4332   333344432  234456 89999988899999999999999843

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.94  E-value=6.5e-25  Score=208.91  Aligned_cols=227  Identities=16%  Similarity=0.162  Sum_probs=161.0

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~  124 (295)
                      ..+||||||.|+||+   ||+|++++|+|||+|+++++.++ ++++|+|+++.  +++.+++.+ ++.++..+ ...|..
T Consensus        12 ~~~vIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iivv~~~~~~~i~~~~~~-~i~~v~~~-~~~G~~   88 (468)
T 1hm9_A           12 NFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAG-QTEFVTQS-EQLGTG   88 (468)
T ss_dssp             EEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTT-CCSEEEEEECTTHHHHHHSSSS-SSEEEECS-SCCCHH
T ss_pred             CcEEEEcCCCCccCCCCCCcEeeEECCccHHHHHHHHHHhc-CCCCEEEEECCCHHHHHHHhCC-CcEEEeCC-ccCChH
Confidence            569999999999996   69999999999999999999988 49999999975  344333322 56665533 344556


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEEee
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIYFS  203 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~~~  203 (295)
                      .+++.|++.+....+.+++++||+||+++++++++++.+.+.. +.+++...+..     +|..+ .+..|++|++..|.
T Consensus        89 ~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~-~~~~i~~~~~~-----~~~~~g~v~~d~~g~v~~~~  162 (468)
T 1hm9_A           89 HAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHK-NVATILTAETD-----NPFGYGRIVRNDNAEVLRIV  162 (468)
T ss_dssp             HHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEECS-----CCTTSCEEEECTTCCEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC-CcEEEEEeccC-----CCCceeEEEECCCCCEEEEE
Confidence            7788888887522579999999999999999999999887642 22333334432     23333 34467789999988


Q ss_pred             cCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecCCc--CCC
Q 022555          204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDHEA--HGV  276 (295)
Q Consensus       204 ~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~~~--idI  276 (295)
                      +++..  +.   .+...+..++|+|+|+++.|.. +......    ++..+|.+.  .++..|.++..++.+++|  +||
T Consensus       163 ek~~~--~~---~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~l~~~g~~v~~~~~~g~~~~i~i  235 (468)
T 1hm9_A          163 EQKDA--TD---FEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIG--IFRETGEKVGAYTLKDFDESLGV  235 (468)
T ss_dssp             CTTTC--CT---TGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHH--HHHHHTCCEEEEECSSGGGGCCC
T ss_pred             ECCCC--Ch---HHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHH--HHHHCCCEEEEEEcCChHHhhCC
Confidence            87421  00   1112468899999999996643 3333322    233344332  344568899999887666  567


Q ss_pred             CCHHHHHHHHHHHHHh
Q 022555          277 DAPEDVEKIESFMRER  292 (295)
Q Consensus       277 dtpeDl~~ae~ll~~r  292 (295)
                      |||+||..|+.++..+
T Consensus       236 ~t~~dl~~a~~~~~~~  251 (468)
T 1hm9_A          236 NDRVALATAESVMRRR  251 (468)
T ss_dssp             CSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            7999999999888654

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.94  E-value=1.3e-25  Score=204.54  Aligned_cols=226  Identities=12%  Similarity=0.127  Sum_probs=155.7

Q ss_pred             eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-------------
Q 022555           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------  108 (295)
Q Consensus        50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-------------  108 (295)
                      +.+||||||.|+||+      ||+|++++|+|||+|+++++.++ ++++|+|+++.  +.+.+++..             
T Consensus        13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~   91 (323)
T 2pa4_A           13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAEL-GATRLAIITAPNKAGVLAHFERSSELEETLMERGK   91 (323)
T ss_dssp             CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTC
T ss_pred             eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhC-CCCEEEEEecCcHHHHHHHHhccchhhhhhhccch
Confidence            459999999999994      89999999999999999999987 49999999985  555544321             


Q ss_pred             -----------cCCeE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCC-HHHHHHHHHHHHhCCCcEEEEee
Q 022555          109 -----------FGADV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAV  175 (295)
Q Consensus       109 -----------~~~~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~-~~~i~~li~~~~~~~d~~v~v~~  175 (295)
                                 .++.+ +..+....|...++..|+..+..+.+.+++++||+|+ + +.+++.+++.+.+.....+++  
T Consensus        92 ~~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~~~i~~--  168 (323)
T 2pa4_A           92 TDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGGSVLCA--  168 (323)
T ss_dssp             HHHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCSEEEEE--
T ss_pred             hhhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCCcEEEE--
Confidence                       23444 2223333455567777777774333559999999999 6 689999999887653333333  


Q ss_pred             eeCCCCCCCCCCceEEE-EC----CCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---C
Q 022555          176 TSLKPEDAFDPNRVKCV-VD----NHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---P  245 (295)
Q Consensus       176 ~~~~~~~~~~p~~~~v~-~d----~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~  245 (295)
                      .++..+   ++..++++ .+    ++|  ++..|.+++.+       .....+..++|+|+|++++|..+....++   +
T Consensus       169 ~~~~~~---~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~-------~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge  238 (323)
T 2pa4_A          169 VEVSEA---DVSKYGIFEIEADTKDSDVKKVKGMVEKPAI-------EDAPSRLAATGRYLLDRKIFDALRRITPGAGGE  238 (323)
T ss_dssp             EECCGG---GGGGSEEEEEEECCSSTTEEEEEEEEESCCT-------TTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGC
T ss_pred             EEeccc---ccCCccEEEeCCcccCCCceeEEEEEECCCC-------ccccccEEEEEEEEECHHHHHHHHhhCCCCCCe
Confidence            333211   12233332 34    454  88888887532       01123678999999999988766554332   2


Q ss_pred             CcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555          246 LQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       246 ~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      ++.++.+.  .++..|.++.+++.++.|+|||||+||..|+..+..
T Consensus       239 ~~l~d~i~--~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~  282 (323)
T 2pa4_A          239 LQLTDAID--LLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGL  282 (323)
T ss_dssp             CCHHHHHH--HHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHH
T ss_pred             EeHHHHHH--HHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhh
Confidence            33344332  234567889999988899999999999999965543

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.94  E-value=6.2e-25  Score=197.54  Aligned_cols=222  Identities=18%  Similarity=0.205  Sum_probs=154.3

Q ss_pred             CCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCe
Q 022555           45 NFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGAD  112 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~  112 (295)
                      |.+|+  +||||||.|+||+      ||+|++++|+|||+|+++.+..++ +++|+|+++   .+.+.+++.+   ++++
T Consensus         1 ~~~m~--aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~Iivv~~~~~~~~i~~~l~~g~~~g~~   77 (295)
T 1lvw_A            1 GAHMK--GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAG-IRDILIISTPRDLPLYRDLLGDGSQFGVR   77 (295)
T ss_dssp             CCSCE--EEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTSE
T ss_pred             CCceE--EEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCC-CCeEEEEeccchHHHHHHHhhhccccCce
Confidence            34554  9999999999997      799999999999999999999885 999998874   2456666643   5666


Q ss_pred             EEe-CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceE
Q 022555          113 VIM-TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVK  190 (295)
Q Consensus       113 v~~-~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~  190 (295)
                      +.+ .++...|...++..|+..+.  .+.++++.||+||.+ ..+.++++.+.+. .++.+  ...++     .+|..+.
T Consensus        78 i~~~~~~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v-----~dp~~~g  147 (295)
T 1lvw_A           78 FSYRVQEEPRGIADAFIVGKDFIG--DSKVALVLGDNVFYG-HRFSEILRRAASLEDGAVI--FGYYV-----RDPRPFG  147 (295)
T ss_dssp             EEEEECSSCCCGGGHHHHTHHHHT--TSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSEEE--EEEEC-----SCCTTSE
T ss_pred             EEEeeCCCCCChHHHHHHHHHHhC--CCcEEEEECCccccC-cCHHHHHHHHHHcCCCcEE--EEEEC-----CCcccCC
Confidence            522 22233355567888888874  345666669999987 6899999988643 23333  23344     2344443


Q ss_pred             -EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEE
Q 022555          191 -CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKV  266 (295)
Q Consensus       191 -v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~  266 (295)
                       +..|++|++..|.++|. .+        ...+.++|+|+|+++++..+..+.++   +++.+|.+.  .++..| ++.+
T Consensus       148 ~v~~d~~g~v~~~~ekp~-~~--------~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v  215 (295)
T 1lvw_A          148 VVEFDSEGRVISIEEKPS-RP--------KSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNE--EYLRMG-KLRV  215 (295)
T ss_dssp             EEEECTTSBEEEEEESCS-SC--------SCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHH--HHHHTT-CEEE
T ss_pred             EEEECCCCcEEEEEECCC-CC--------CCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHH--HHHHcC-CcEE
Confidence             44588899999988752 11        13578899999999998766544332   344444331  234455 3455


Q ss_pred             EEec-C-CcCCCCCHHHHHHHHHHHHH
Q 022555          267 IKVD-H-EAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       267 v~~~-~-~~idIdtpeDl~~ae~ll~~  291 (295)
                      +... + .|+|||||+||..|+.+++.
T Consensus       216 ~~~~~g~~w~Digt~edl~~a~~~~~~  242 (295)
T 1lvw_A          216 ELMGRGMAWLDTGTHDGLLEASSFIET  242 (295)
T ss_dssp             EEECTTCEECCCSSHHHHHHHHHHHHH
T ss_pred             EEeCCCCeEEeCCCHHHHHHHHHHHHH
Confidence            5554 5 59999999999999988864

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=99.93  E-value=3e-24  Score=185.62  Aligned_cols=213  Identities=14%  Similarity=0.158  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCC-eEEeCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DVIMTSESC  120 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~-~v~~~~~~~  120 (295)
                      .|++.+||||||+|+||+   ||+|++++|+|||+|+++++.+++.+++|+|+++.  +.+.+ +.+++. .+.+.+ ..
T Consensus         4 ~~~~~aiIlA~G~g~R~~~~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~i~~~~-~~   81 (231)
T 1vgw_A            4 KRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFPQVRVWKN-GG   81 (231)
T ss_dssp             CCCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCTTSEEECC-CC
T ss_pred             CCceEEEEEcccccccCCCCCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCCCceEEEc-CC
Confidence            366889999999999997   79999999999999999999987669999999963  45555 444432 222222 22


Q ss_pred             CCcHHHHHHHHHHccc-----cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555          121 RNGTERCNEALQKLEK-----KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN  195 (295)
Q Consensus       121 ~g~~~~i~~al~~~~~-----~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~  195 (295)
                      .+...++..|+..+..     +.+.+++++||+||+++++++++++.+.++.+..+.+  .+..       +.++. . +
T Consensus        82 ~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~--~~~~-------~~~~~-~-~  150 (231)
T 1vgw_A           82 QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA--VPVA-------DTLKR-A-E  150 (231)
T ss_dssp             SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE--EECC-------SCEEE-E-S
T ss_pred             CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeEEEE--eecc-------cceEE-e-C
Confidence            3556678888887742     3589999999999999999999999887643233322  2321       12332 2 4


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCc
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEA  273 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~  273 (295)
                      +|++.   +.+   +|+       ........|+|+++.|..... .....  .++..   .++ ..|.++..++.+..|
T Consensus       151 ~g~i~---~~~---~~~-------~~~~~~~p~~f~~~~l~~~~~~~~~~g--~~~~~---~~~~~~~~~v~~v~~~~~~  212 (231)
T 1vgw_A          151 SGQIS---ATV---DRS-------GLWQAQTPQLFQAGLLHRALAAENLGG--ITDEA---SAVEKLGVRPLLIQGDARN  212 (231)
T ss_dssp             SSBEE---EEE---CCT-------TEEEEEEEEEEEHHHHHHHHHC----C--CCSHH---HHHHTTTCCCEEEECCTTC
T ss_pred             CCceE---ecC---ChH-------HheeeeCCcEecHHHHHHHHHHHhhcC--CCcHH---HHHHHcCCCEEEEECCccc
Confidence            56543   221   121       122223479999987765332 11111  22221   122 247788888877899


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 022555          274 HGVDAPEDVEKIESFMR  290 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~  290 (295)
                      +|||||+||+.|+++++
T Consensus       213 ~dIdtpeDl~~a~~~l~  229 (231)
T 1vgw_A          213 LKLTQPQDAYIVRLLLD  229 (231)
T ss_dssp             CCCCSHHHHHHHHHHCC
T ss_pred             cCcCCHHHHHHHHHHHh
Confidence            99999999999998764

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.93  E-value=1.2e-24  Score=206.30  Aligned_cols=227  Identities=13%  Similarity=0.212  Sum_probs=161.0

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR  121 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~  121 (295)
                      +|++.+||||||.|+||+   ||+|++++|+|||+|+++++.+++ +++|+|++++  +++.+++.++++.++..+ ...
T Consensus         3 ~~~~~aiIlA~G~g~Rl~~~~pK~l~~i~gkpli~~~l~~l~~~~-~~~iivv~~~~~~~i~~~~~~~~~~~v~~~-~~~   80 (456)
T 2v0h_A            3 KKALSAVILAAGKGTRMYSDLPKVLHTIAGKPMVKHVIDTAHQLG-SENIHLIYGHGGDLMRTHLANEQVNWVLQT-EQL   80 (456)
T ss_dssp             -CCEEEEEECCCCCGGGCSSSCGGGSEETTEEHHHHHHHHHHHTT-CSCEEEEECTTHHHHHHHTTTCCCEEEECS-CCC
T ss_pred             CCcceEEEECCCCCcccCCCCCccccEECCccHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhhcCCcEEEeCC-CCC
Confidence            367889999999999996   799999999999999999999885 9999999985  455555555567765543 334


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAI  200 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~  200 (295)
                      |...+++.+++.+. +.+.+++++||+||+++++++++++.+.+ .+..  +...+..     +|..+ .+..+ +|++.
T Consensus        81 g~~~~~~~~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~-~~~~--~~~~~~~-----~~~~~g~v~~~-~g~v~  150 (456)
T 2v0h_A           81 GTAHAVQQAAPFFK-DNENIVVLYGDAPLITKETLEKLIEAKPE-NGIA--LLTVNLD-----NPTGYGRIIRE-NGNVV  150 (456)
T ss_dssp             CHHHHHHHHGGGCC-TTSEEEEEETTCTTCCHHHHHHHHHHCCT-TSEE--EEEEECS-----SCTTSCEEEEE-TTEEE
T ss_pred             CcHHHHHHHHHhcC-CCCeEEEEcCCcceeCHHHHHHHHHHHhc-CCEE--EEEeecC-----CCCccceEEEc-CCcEE
Confidence            55678888888874 25799999999999999999999998765 3333  3223332     23222 33345 78888


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCC----CCcccchhhhhhhhhCCceEEEEEecC--Cc
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDH--EA  273 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~--~~  273 (295)
                      .|.+++..  +   ..++..+..++|+|+|+++.|.. +......    ++..++.+.  .+...|.++..++.++  .+
T Consensus       151 ~~~ek~~~--~---~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~~~~~~~~~~  223 (456)
T 2v0h_A          151 AIVEQKDA--N---AEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIA--LANQDNCQVVAVQATDVMEV  223 (456)
T ss_dssp             EEECTTTC--C---HHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHH--HHHHTTCCEEEEECSCTGGG
T ss_pred             EEEECCCC--C---hhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHH--HHHHcCCEEEEEEeCCcceE
Confidence            88775321  0   01122468899999999987654 3332221    233344332  2345688899998853  47


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 022555          274 HGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       274 idIdtpeDl~~ae~ll~~r  292 (295)
                      ++||||+||+.|+.++..+
T Consensus       224 ~~I~tpeDl~~a~~~l~~~  242 (456)
T 2v0h_A          224 EGANNRLQLAALERYFQNK  242 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHH
Confidence            8999999999999988765

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=99.93  E-value=9.9e-26  Score=195.91  Aligned_cols=217  Identities=11%  Similarity=0.173  Sum_probs=144.0

Q ss_pred             CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCC-eE-EeCCC
Q 022555           46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGA-DV-IMTSE  118 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~-~v-~~~~~  118 (295)
                      .||++.+||||||+|+||+   +|+|++++|+|||+|+++++.+++.+++|+|++++  +.+.+ +..++. .+ +..+ 
T Consensus         4 ~~~~~~~iIlA~G~g~R~~~~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~~~v~~~~~-   81 (236)
T 1i52_A            4 THLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANHPQITVVDG-   81 (236)
T ss_dssp             -CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGCTTEEEEEC-
T ss_pred             CCCceeEEEECCcCccccCCCCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCCCCEEEECC-
Confidence            4678999999999999998   89999999999999999999987668999999973  34444 333332 22 2222 


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCC-C
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-G  197 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~-g  197 (295)
                       ..+...++..|+..+. +.+.+++++||+||++++.++++++.+.+..+..+.+  .+..       +.++. .+++ |
T Consensus        82 -~~g~~~~i~~al~~~~-~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~--~~~~-------~~~~~-~~~~~~  149 (236)
T 1i52_A           82 -GDERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILA--APVR-------DTMKR-AEPGKN  149 (236)
T ss_dssp             -CSSHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEE--EECC-------SCEEE-ECTTSS
T ss_pred             -CCCHHHHHHHHHHhcC-CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeEEEE--Eecc-------ccEEE-EcCCCC
Confidence             1356678899998874 3589999999999999999999999876543122222  2221       12333 3444 4


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCC
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHG  275 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~id  275 (295)
                      .+..    +.  ++...       +..-+.++|+...+.... .........++..   .++ ..|.++..++.+..|+|
T Consensus       150 ~i~~----~~--~~~~i-------~~~~~p~~f~~~~l~~~~~~~~~~g~~~td~~---~~~~~~~~~v~~v~~~~~~~d  213 (236)
T 1i52_A          150 AIAH----TV--DRNGL-------WHALTPQFFPRELLHDCLTRALNEGATITDEA---SALEYCGFHPQLVEGRADNIK  213 (236)
T ss_dssp             SEEE----EE--CCTTC-------EEEEEEEEEEHHHHHHHHHHHHHTTCCCCSHH---HHHHHTTCCCEEEECCTTCCC
T ss_pred             ceee----cc--ChHhh-------eeeeCCceecHHHHHHHHHHHHhcCCCcccHH---HHHHHcCCCEEEEecCccccc
Confidence            5431    11  22111       111245889887665422 1111111223221   222 25778888888788999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 022555          276 VDAPEDVEKIESFMRER  292 (295)
Q Consensus       276 IdtpeDl~~ae~ll~~r  292 (295)
                      ||||+||+.|++++++|
T Consensus       214 IdtpeDl~~a~~~~~~~  230 (236)
T 1i52_A          214 VTRPEDLALAEFYLTRT  230 (236)
T ss_dssp             CCSHHHHHHHHHHHCC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999998766

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.93  E-value=8e-25  Score=196.91  Aligned_cols=218  Identities=18%  Similarity=0.186  Sum_probs=152.1

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHH---cCCeEEe-CC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQ---FGADVIM-TS  117 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~---~~~~v~~-~~  117 (295)
                      .+||||||.|+||+      ||+|++++|+|||+|+++++..++ +++|+|+++   .+.+.+++.+   +++++.+ .+
T Consensus         5 ~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~g-i~~I~vv~~~~~~~~i~~~l~~g~~~g~~i~~~~~   83 (296)
T 1mc3_A            5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAG-IREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQ   83 (296)
T ss_dssp             EEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTT-CCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEEC
T ss_pred             EEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCC-CCcEEEEechhHHHHHHHHHhcccccCceEEEecc
Confidence            49999999999996      899999999999999999999874 999998874   2456666643   5666522 22


Q ss_pred             CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceE-EEECC
Q 022555          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVK-CVVDN  195 (295)
Q Consensus       118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~-v~~d~  195 (295)
                      +...|...++..|+..+.  .+.++++.||+||.+ ..+.++++.+.+. .++.+  ...++.     +|..++ +..|+
T Consensus        84 ~~~~G~~~al~~a~~~i~--~~~~~lv~gD~~~~~-~~l~~~l~~~~~~~~~~~v--~~~~v~-----dp~~yg~v~~d~  153 (296)
T 1mc3_A           84 PSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFG-QGFSPKLRHVAARTEGATV--FGYQVM-----DPERFGVVEFDD  153 (296)
T ss_dssp             SSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEEC-SSCHHHHHHHTTCCSSEEE--EEEECS-----CCSSSBBCEEET
T ss_pred             CCCCCHHHHHHHHHHHhC--CCCEEEEECCccccc-cCHHHHHHHHHHcCCCCEE--EEEECC-----CcccCCEEEECC
Confidence            233345567888888874  345666669999987 5789999888542 33333  233432     344443 34578


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEec-C
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVD-H  271 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~-~  271 (295)
                      +|++..|.++|.. +        ...+.++|+|+|+++++..+..+.++   +++.++.+.  .++..| ++.++..+ +
T Consensus       154 ~g~v~~~~ekp~~-~--------~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~--~~l~~g-~~~v~~~~~g  221 (296)
T 1mc3_A          154 NFRAISLEEKPKQ-P--------KSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQ--MYLEAG-NLTVELLGRG  221 (296)
T ss_dssp             TEEEEECCBSCSS-C--------SCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHH--HHHHTT-CEEEEECCTT
T ss_pred             CCcEEEEEECCCC-C--------CCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHH--HHHhcC-CeEEEEeCCC
Confidence            8999988887521 1        13588999999999998876554432   344444321  234455 45666554 5


Q ss_pred             -CcCCCCCHHHHHHHHHHHHH
Q 022555          272 -EAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       272 -~~idIdtpeDl~~ae~ll~~  291 (295)
                       .|+|||||+||..|+.+++.
T Consensus       222 ~~w~Digt~edl~~a~~~~~~  242 (296)
T 1mc3_A          222 FAWLDTGTHDSLIEASTFVQT  242 (296)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEeCCCHHHHHHHHHHHHH
Confidence             49999999999999988764

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=99.92  E-value=1.6e-24  Score=187.76  Aligned_cols=213  Identities=16%  Similarity=0.222  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCCCCC----ccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeE----EeCCC
Q 022555           50 VVGIIPARFASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADV----IMTSE  118 (295)
Q Consensus        50 i~aiIlAaG~gsRl~~----K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v----~~~~~  118 (295)
                      +.+||||||+|+||++    |+|++++|+|||+|+++++.+++.+++|+|+++++.   +.++++++++.+    ...+ 
T Consensus         3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (236)
T 2vsh_A            3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITK-   81 (236)
T ss_dssp             EEEEEEEC-----------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEEEE-
T ss_pred             eEEEEeCCccccccCCCCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEEEC-
Confidence            5799999999999964    999999999999999999998766999999998654   666666666211    1111 


Q ss_pred             CCCCcHHHHHHHHHHcc---c--cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555          119 SCRNGTERCNEALQKLE---K--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV  193 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~---~--~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~  193 (295)
                      ...+...++..|+..+.   .  +.+.+++++||+||+++++++++++.+.+. ++.+.+  .++.     +  .++.  
T Consensus        82 ~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~~~~--~~~~-----~--~~~~--  149 (236)
T 2vsh_A           82 GGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNH-DAVDTV--VEAV-----D--TIVE--  149 (236)
T ss_dssp             CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHS-SEEEEE--EECC-----S--CEEE--
T ss_pred             CCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhc-CcEEEE--Eecc-----c--cEEE--
Confidence            11345567888888774   1  347899999999999999999999998765 322222  3331     1  2332  


Q ss_pred             CCCC-eEEEeecCCCCCCCCCCCCCCCCceEE-EeEEEecHHHHhh-cccCCCCCCc-ccchhhhhhhhhCCceEEEEEe
Q 022555          194 DNHG-YAIYFSRGLIPYNKSGKVNPQFPYLLH-LGIQSYDSNFLKI-YPGLHPTPLQ-LEEDLEQLKVLENGYKMKVIKV  269 (295)
Q Consensus       194 d~~g-~v~~~~~~~i~~~r~~~~~~~~p~~~~-~Giyif~~~~l~~-~~~~~~~~~~-~~d~~~~~~~~~~G~~v~~v~~  269 (295)
                      +++| ++..+.++              +.... ...|+|+++.+.. +......... .++...  .+...|.++..++.
T Consensus       150 ~~~g~~~~~~~~~--------------~~~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~--~l~~~~~~v~~~~~  213 (236)
T 2vsh_A          150 STNGQFITDIPNR--------------AHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACK--IFVIKGKDVALAKG  213 (236)
T ss_dssp             CSSSSBCCBCCCG--------------GGEEEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHH--HHHHTTCCEEEEEC
T ss_pred             eCCCCeeeeecCh--------------HHheeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHH--HHHHcCCCEEEEEC
Confidence            3566 65433221              11222 2368999987764 3222111111 222211  12236788999988


Q ss_pred             cCCcCCCCCHHHHHHHHHHHHH
Q 022555          270 DHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       270 ~~~~idIdtpeDl~~ae~ll~~  291 (295)
                      +..|+|||||+||..|+.++++
T Consensus       214 ~~~~~dIdtpeDl~~a~~~~~~  235 (236)
T 2vsh_A          214 EYSNLKITTVTDLKIAKSMIEK  235 (236)
T ss_dssp             CTTCCCCCSHHHHHHHHHHTC-
T ss_pred             CccccCcCCHHHHHHHHHHhhc
Confidence            7899999999999999988753

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.92  E-value=3.7e-24  Score=193.62  Aligned_cols=234  Identities=10%  Similarity=0.148  Sum_probs=136.0

Q ss_pred             CceEEEEEcCCCCCCCC-------Ccccccc-CCcchHHHHHHHHhhCCCCCeEEEECCch---HHHHHHHH-cCC-eE-
Q 022555           48 SRVVGIIPARFASSRFE-------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ-FGA-DV-  113 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-------~K~l~~i-~gkpLl~~~l~~l~~~~~i~~IvVv~~~~---~i~~~~~~-~~~-~v-  113 (295)
                      |++.+||||||.|+||.       ||+|+++ +|+|||+|+++++.++  +++|+|+++.+   .+.+.+.. +++ .+ 
T Consensus         3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~--~~~i~vv~~~~~~~~i~~~~~~~~~~~~~~   80 (308)
T 2qh5_A            3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL--VDETLIVCNEKHYFLALEEIKNEIKNKSVG   80 (308)
T ss_dssp             CCEEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT--CSEEEEEEEGGGHHHHHHHTTTTCSSCEEE
T ss_pred             CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc--CCCEEEEEChhHHHHHHHHHHHhhCCCccE
Confidence            45779999999999992       8999999 5999999999999876  89999999853   55566655 555 43 


Q ss_pred             EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH---HHhCCCcEEEEeeeeCCCCCCCCCCceE
Q 022555          114 IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPEDAFDPNRVK  190 (295)
Q Consensus       114 ~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~---~~~~~d~~v~v~~~~~~~~~~~~p~~~~  190 (295)
                      +..++...|...++..++..+. ..+.+++++||+|+++.+.++++++.   +.+. +..+++.+.+..     ++..++
T Consensus        81 ~i~~~~~~gt~~al~~a~~~l~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~-----~~~~~g  153 (308)
T 2qh5_A           81 FLLESLSKNTANAIALSALMSD-KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQK-GFLVTFGVSIDK-----PNTEFG  153 (308)
T ss_dssp             EEEESSCCCHHHHHHHHHHTSC-TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHT-TCEEEEEEECSS-----CCTTSE
T ss_pred             EEeCCCCCChHHHHHHHHHHhC-CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhc-CCEEEEEEecCC-----CCCCce
Confidence            2222233354566788887773 23569999999998888889999987   4443 344444444432     122344


Q ss_pred             EE-ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh-hcccCCCC--------------C----Cccc-
Q 022555          191 CV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPT--------------P----LQLE-  249 (295)
Q Consensus       191 v~-~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~--------------~----~~~~-  249 (295)
                      ++ .+++|++..|.+++.+ .+......+..+.+++|+|+|++++|. .+.+..++              +    +++. 
T Consensus       154 ~i~~d~~~~V~~~~Ekp~~-~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~  232 (308)
T 2qh5_A          154 YIESPNGLDVKRFIEKPSL-DKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIAR  232 (308)
T ss_dssp             EEECSSSSBCSEEEESCCH-HHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEE
T ss_pred             EEEECCCCEEEEEEECCCh-HHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhh
Confidence            33 4657899999887532 100000001136899999999998752 23222111              0    2221 


Q ss_pred             ---chhhh-------hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHH
Q 022555          250 ---EDLEQ-------LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       250 ---d~~~~-------~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~  291 (295)
                         +.+..       ..+++.|.+|.+++.+.+|.|||||+||..++..-..
T Consensus       233 ~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~~~  284 (308)
T 2qh5_A          233 LSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANEPK  284 (308)
T ss_dssp             ECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC----------------
T ss_pred             hhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcCcC
Confidence               11110       0245678899999998999999999999998876543

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=99.92  E-value=1.3e-23  Score=181.98  Aligned_cols=211  Identities=18%  Similarity=0.192  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHH--cCCeEEeCCCCCCCcH
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ--FGADVIMTSESCRNGT  124 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~--~~~~v~~~~~~~~g~~  124 (295)
                      +.+||||||+|+||+   +|+|++++|+|||+|+++++++++.+++|+|+++++....+.+.  ++..+... ....+..
T Consensus        14 ~~aiILAaG~s~Rm~~~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~-~gg~~~~   92 (234)
T 1vpa_A           14 NVAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIV-EGGDTRS   92 (234)
T ss_dssp             EEEEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEE-ECCSSHH
T ss_pred             CeEEEEcCcchhhcCCCCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhccCCceEEe-CCCCcHH
Confidence            569999999999997   89999999999999999999988668999999986543221211  12222111 0101134


Q ss_pred             HHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555          125 ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS  203 (295)
Q Consensus       125 ~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~  203 (295)
                      .++..|+..+.. +.+.+++++||+||+++++++++++.+.++ ++.+++  .++.       +.++. .+++| + .+.
T Consensus        93 ~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~-~~~i~~--~~~~-------~~~~~-~~~~g-v-~~~  159 (234)
T 1vpa_A           93 QSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARET-GAATLA--LKNS-------DALVR-VENDR-I-EYI  159 (234)
T ss_dssp             HHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH-SEEEEE--EECC-------SEEEE-EETTE-E-EEE
T ss_pred             HHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc-CCEEEE--EecC-------CcEEE-ECCCC-c-ccC
Confidence            568888888743 357899999999999999999999988654 333322  2321       12333 35566 4 332


Q ss_pred             cCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHHH
Q 022555          204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDV  282 (295)
Q Consensus       204 ~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeDl  282 (295)
                      +      |+.       .+..-..++|+...+..+....   ...++..   .++ ..|.++..++.+..|+|||||+||
T Consensus       160 ~------r~~-------~~~~~~p~~f~~~~l~~~~~~~---~~~~~~~---~~~~~~g~~v~~v~~~~~~~dIdtpeDl  220 (234)
T 1vpa_A          160 P------RKG-------VYRILTPQAFSYEILKKAHENG---GEWADDT---EPVQKLGVKIALVEGDPLCFKVTFKEDL  220 (234)
T ss_dssp             C------CTT-------EEEEEEEEEEEHHHHHHHHTTC---CCCSSSH---HHHHTTTCCCEEEECCGGGCCCCSTTHH
T ss_pred             C------hhH-------eeeecCCccccHHHHHHHHHhc---CCCCcHH---HHHHHcCCcEEEEECCchhcCCCCHHHH
Confidence            2      211       1111133789988776543321   1112211   122 257788888876789999999999


Q ss_pred             HHHHHHHHHhc
Q 022555          283 EKIESFMRERN  293 (295)
Q Consensus       283 ~~ae~ll~~r~  293 (295)
                      +.|++++++++
T Consensus       221 ~~a~~~l~~~~  231 (234)
T 1vpa_A          221 ELARIIAREWE  231 (234)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHhccc
Confidence            99999998875

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=99.92  E-value=1.4e-23  Score=177.03  Aligned_cols=189  Identities=18%  Similarity=0.244  Sum_probs=136.5

Q ss_pred             CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~  124 (295)
                      |++.+||||||+|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++  +.+.+++..+++.++.++....|..
T Consensus         4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pli~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (199)
T 2waw_A            4 SRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCP-FDQLIVTLGGAADEVLEKVELDGLDIVLVDDAGLGCS   82 (199)
T ss_dssp             CCEEEEEEESSCCTTTTSCGGGCEETTEEHHHHHHHHHHTSS-CSEEEEEECTTHHHHHHHSCCTTSEEEECCCCCTTCC
T ss_pred             CceEEEEECCCCCCCCCCCEEeCEeCccCHHHHHHHHHHhCC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence            56889999999999995 899999999999999999999885 8999999974  4555555556788776544444556


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      .++..|+..+..+.+.+++++||+||+++++++++++. ..+.  .+.+..                 .  +|..     
T Consensus        83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~--~~~~~~-----------------~--~g~~-----  135 (199)
T 2waw_A           83 SSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG-GRGA--TIAVCE-----------------Y--ANGI-----  135 (199)
T ss_dssp             CHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH-HTTC--SEEEEE-----------------E--TTEE-----
T ss_pred             HHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh-cCCC--CEEEEe-----------------c--CCcc-----
Confidence            78999998874235899999999999999999999987 4322  222211                 0  1110     


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec-CCcCCCCCHHHH
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD-HEAHGVDAPEDV  282 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~-~~~idIdtpeDl  282 (295)
                                   ..|       ++|+++.+....... .+..      ...++. .|.++..++.+ ..++|||||+||
T Consensus       136 -------------~~P-------~~~~~~~l~~~~~~~-~~~~------~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl  188 (199)
T 2waw_A          136 -------------GHP-------FWVSRGVFGDLAELH-GDKG------VWRLIESGRHGVRRIRVDADVPLDVDTWDDY  188 (199)
T ss_dssp             -------------EEE-------EEEEGGGHHHHHTCS-STTC------HHHHHHSSSSCEEEEECSSCCCCCCSSHHHH
T ss_pred             -------------cCC-------EEEcHHHHHHHHhcC-CCHH------HHHHHHhCcccEEEEEcCcccccCCCCHHHH
Confidence                         013       578887776544321 1111      112233 46678888875 589999999999


Q ss_pred             HHHHHHHHH
Q 022555          283 EKIESFMRE  291 (295)
Q Consensus       283 ~~ae~ll~~  291 (295)
                      ..++++++.
T Consensus       189 ~~~~~~~~~  197 (199)
T 2waw_A          189 ERLLASVVR  197 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998863

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=99.92  E-value=1.8e-24  Score=188.39  Aligned_cols=208  Identities=15%  Similarity=0.204  Sum_probs=134.4

Q ss_pred             CceEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           48 SRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      |++.+||||||+|+||+  +|+|++++|+|||+|++++  . ..+++|+|++++ .+.+ ++..++.++..   ..+...
T Consensus        24 M~~~aiILAgG~s~Rm~~~~K~l~~i~gkpli~~~l~~--~-~~~~~ivvv~~~-~~~~-~~~~~v~~~~~---~~~~~~   95 (236)
T 2px7_A           24 MEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAA--F-RDAAEVLVALPP-GAEP-PKGLGAVFLEG---GATRQA   95 (236)
T ss_dssp             CCCEEEEECCC-------CCGGGCBCSSSBHHHHHHHH--T-TTCSEEEEEECT-TCCC-CTTCSCEEEEC---CSSHHH
T ss_pred             CceEEEEEcCCCCccCCCCCCeEEEECCEEHHHHHHHh--c-CCCCeEEEEeCH-HHHH-hhcCCcEEEeC---CCchHH
Confidence            67889999999999997  8999999999999999999  3 368999999986 3333 33334554422   224567


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ++..|+..+.  .+.+++++||+||+++++++.+++.+.+. ++.+++  .+..       +..++ .+ +|++..+.+ 
T Consensus        96 ~i~~al~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~~~-~~~i~~--~~~~-------~~~~~-~~-~G~v~~~~~-  160 (236)
T 2px7_A           96 SVARLLEAAS--LPLVLVHDVARPFVSRGLVARVLEAAQRS-GAAVPV--LPVP-------DTLMA-PE-GEAYGRVVP-  160 (236)
T ss_dssp             HHHHHHHHCC--SSEEEECCTTCCCCCHHHHHHHHHHHHHH-SEEEEE--EECC-------SEEEE-EC-SSSCEEEEC-
T ss_pred             HHHHHHHHcC--CCeEEEecCccccCCHHHHHHHHHHHHhc-CCeEEE--EecC-------CcEEE-ec-CCeEEecCC-
Confidence            8899998874  57899999999999999999999988654 443332  2321       12333 34 676543322 


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHHHH
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPEDVE  283 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeDl~  283 (295)
                           |+..+..+.|       ++|+++.|..... .....+..++..   .++ ..|.++..++.+..|+|||||+||+
T Consensus       161 -----~~~~~~~~~~-------~~f~~~~l~~~~~~~~~~g~~~~d~~---~ll~~~~~~v~~v~~~~~~~dIdtpeDl~  225 (236)
T 2px7_A          161 -----REAFRLVQTP-------QGFFTALLREAHAYARRKGLEASDDA---QLVQALGYPVALVEGEATAFKITHPQDLV  225 (236)
T ss_dssp             -----GGGCEEECSC-------EEEEHHHHHHHHHHHHHHTCCCSSHH---HHHHHTTCCCEEEECCTTCCCCCSHHHHH
T ss_pred             -----hHhhccccCC-------eEEcHHHHHHHHHHHHhcCCCchhHH---HHHHHcCCcEEEEECCccccCCCCHHHHH
Confidence                 2111112234       7888887654221 110112222221   222 2577888888878999999999999


Q ss_pred             HHHHHHHHhc
Q 022555          284 KIESFMRERN  293 (295)
Q Consensus       284 ~ae~ll~~r~  293 (295)
                      .|++++++|+
T Consensus       226 ~a~~~l~~~~  235 (236)
T 2px7_A          226 LAEALARVWS  235 (236)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHhcc
Confidence            9999998764

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.92  E-value=7.4e-24  Score=186.25  Aligned_cols=217  Identities=14%  Similarity=0.156  Sum_probs=145.9

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHc-----CCeE-
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-----GADV-  113 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~-----~~~v-  113 (295)
                      |++.+||||||.|+||+      ||+|++++|+|||+|+++++.+++ +++|+|+++  .+.+.+++.++     ++.+ 
T Consensus         1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~   79 (259)
T 1tzf_A            1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHG-IKDFIICCGYKGYVIKEYFANYFLHMSDVTFH   79 (259)
T ss_dssp             CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred             CCcEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCC-CCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence            45679999999999996      799999999999999999999885 999999996  35666666432     3332 


Q ss_pred             -------EeCC------------CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEe
Q 022555          114 -------IMTS------------ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  174 (295)
Q Consensus       114 -------~~~~------------~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~  174 (295)
                             +.++            ....|...++..|+..+. ..+.+++++||+ +. +.+++++++.+.++. +.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~-~~~t~~  155 (259)
T 1tzf_A           80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDG-VA-DLDIKATIDFHKAHG-KKATLT  155 (259)
T ss_dssp             GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTE-EE-CCCHHHHHHHHHHHC-CSEEEE
T ss_pred             ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-CCCcEEEEECCE-ec-ccCHHHHHHHHHHhC-CeEEEE
Confidence                   2111            112233456777777763 246799999999 43 467999999886532 233332


Q ss_pred             eeeCCCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhh
Q 022555          175 VTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE  253 (295)
Q Consensus       175 ~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~  253 (295)
                      ..+       +|..++ +..+ +|++..|.+++.+          ..+.+++|+|+|++++|..+... ...++ ++.+.
T Consensus       156 ~~~-------~~~~~g~v~~~-~g~v~~~~ekp~~----------~~~~~~~Giy~~~~~~l~~l~~~-~~~~~-~~~i~  215 (259)
T 1tzf_A          156 ATF-------PPGRFGALDIQ-AGQVRSFQEKPKG----------DGAMINGGFFVLNPSVIDLIDND-ATTWE-QEPLM  215 (259)
T ss_dssp             EEC-------CCCCSEEEEEE-TTEEEEEEESCSC----------CSCCEECCCEEECGGGGGGCCST-TCCTT-THHHH
T ss_pred             Eec-------CCCCccEEEEc-CCEEEEEEecCCC----------CCceEEEEEEEeCHHHHHhhccc-ccccH-HHHHH
Confidence            221       223344 3456 8899999887521          13578999999999988644221 11122 23332


Q ss_pred             hhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          254 QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       254 ~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                        .++..| ++.+++.+++|.|||||+||..++.++.+.
T Consensus       216 --~~~~~~-~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~  251 (259)
T 1tzf_A          216 --TLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKG  251 (259)
T ss_dssp             --HHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTT
T ss_pred             --HHHHcC-CEEEEEeCcEEEeCCCHHHHHHHHHHHhcC
Confidence              234455 688888888999999999999999988753

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.91  E-value=1.3e-24  Score=191.45  Aligned_cols=211  Identities=17%  Similarity=0.167  Sum_probs=145.7

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCC
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES  119 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~  119 (295)
                      |++.+||||||.|+||+      ||+|++++|+|||+|+++++.+++ +++|+|+++  .+.+..+.+.+++.++.+++.
T Consensus        24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g-~~~i~vv~~~~~~~i~~~~~~~~~~iv~~~~~  102 (254)
T 1jyk_A           24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKG-INDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY  102 (254)
T ss_dssp             CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTT-CCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred             cCceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCC-CCeEEEEeCCcHHHHHHHHHhCCcEEEECCCc
Confidence            46789999999999997      899999999999999999999884 999999997  456666666678888776543


Q ss_pred             CC-CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC-CceEEEECCCC
Q 022555          120 CR-NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG  197 (295)
Q Consensus       120 ~~-g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p-~~~~v~~d~~g  197 (295)
                      .. |...++..|+..+.   + +++++||+|+.. +.++.++    +. +..+++.   ..     +| ..++++.|++|
T Consensus       103 ~~~g~~~al~~a~~~~~---~-~lv~~~D~~~~~-~~~~~~~----~~-~~~~t~~---~~-----~~~~~~~v~~d~~g  164 (254)
T 1jyk_A          103 ADYNNFYSLYLVKEELA---N-SYVIDADNYLFK-NMFRNDL----TR-STYFSVY---RE-----DCTNEWFLVYGDDY  164 (254)
T ss_dssp             TTSCTHHHHHTTGGGCT---T-EEEEETTEEESS-CCCCSCC----CS-EEEEECE---ES-----SCSSCCEEEECTTC
T ss_pred             cCCCcHHHHHHHHHHCC---C-EEEEeCCcccCH-HHHHHHH----hC-CceEEEE---cc-----cCCCCeEEEECCCC
Confidence            33 44466777776652   3 789999999987 5544433    22 2333332   11     22 23556678889


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc----cCCC----CCCcccchhhhhhhhhCCceEEEEEe
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP----GLHP----TPLQLEEDLEQLKVLENGYKMKVIKV  269 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~----~~~~----~~~~~~d~~~~~~~~~~G~~v~~v~~  269 (295)
                      ++..|.+++            ...++++|+|+|+++.+..+.    ...+    .+...++.   ...+..|.++.+++.
T Consensus       165 ~v~~~~e~~------------~~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~---~~~l~~~~~v~~~~~  229 (254)
T 1jyk_A          165 KVQDIIVDS------------KAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNM---VKDNIKELDVYVEEL  229 (254)
T ss_dssp             BEEEEECCC------------SSEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHH---HHTTGGGCCEEEEEC
T ss_pred             eEEEEEECC------------CCCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHH---HHHHHhhCCeEEEEe
Confidence            999887752            135789999999987543211    1101    11111221   122345778999888


Q ss_pred             c-CCcCCCCCHHHHHHHHHHHHHh
Q 022555          270 D-HEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       270 ~-~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      + ..|++||||+||..|+.++++.
T Consensus       230 ~~~~~~~Idt~edl~~a~~~l~~~  253 (254)
T 1jyk_A          230 EGNSIYEIDSVQDYRKLEEILKNE  253 (254)
T ss_dssp             CTTSEEECCSHHHHHHHHHHHC--
T ss_pred             cCCeEEEcCCHHHHHHHHHHhhhc
Confidence            7 7999999999999999998764

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.91  E-value=1.1e-23  Score=198.17  Aligned_cols=240  Identities=14%  Similarity=0.137  Sum_probs=156.5

Q ss_pred             eeCCCCCCCC-ceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH
Q 022555           39 YLGRSKNFRS-RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ  108 (295)
Q Consensus        39 ~~~~~~~~~~-~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~  108 (295)
                      |+..+...|| ++.+||||||.|+||+      ||+|++++|+ |||+|+++++.+++ +++|+|++++  +.+.+++.+
T Consensus         1 ~~~~~~~~mm~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~~~~   79 (420)
T 3brk_X            1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSG-IRRIGVATQYKAHSLIRHLQR   79 (420)
T ss_dssp             ------CCGGGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHH
T ss_pred             CCcccchhhhhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCC-CCeEEEEeCCChHHHHHHHhh
Confidence            3334444555 4889999999999997      8999999999 99999999999884 9999999985  667776654


Q ss_pred             -cCC---------eEEeCCC---CC---CCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          109 -FGA---------DVIMTSE---SC---RNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       109 -~~~---------~v~~~~~---~~---~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                       ++.         .++...+   ..   .|...+++.|+..+.. +.+.+++++||+ +. +.+++++++.+.++. +.+
T Consensus        80 ~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~-~~-~~~l~~l~~~~~~~~-~~~  156 (420)
T 3brk_X           80 GWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDH-IY-KMDYEYMLQQHVDSG-ADV  156 (420)
T ss_dssp             HSCCCCGGGTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSC-EE-CBCTHHHHHHHHHTT-CSE
T ss_pred             hhccccccccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccE-EE-chHHHHHHHHHHHcC-CeE
Confidence             442         2222111   11   3555678888877742 247899999999 54 457899999887642 223


Q ss_pred             EEeeeeCCCCCCCCCCceE-EEECCCCeEEEeecCCCCCCCCCCCCCC--CCceEEEeEEEecHHHHhh-cccCCCCC--
Q 022555          172 STAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQ--FPYLLHLGIQSYDSNFLKI-YPGLHPTP--  245 (295)
Q Consensus       172 ~v~~~~~~~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~r~~~~~~~--~p~~~~~Giyif~~~~l~~-~~~~~~~~--  245 (295)
                      ++.+.++..   .++..++ +..+++|++..|.+++....    .++.  ..+..++|+|+|++++|.. +....+..  
T Consensus       157 tl~~~~~~~---~~~~~~g~v~~d~~g~v~~~~ekp~~~~----~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~  229 (420)
T 3brk_X          157 TIGCLEVPR---MEATGFGVMHVNEKDEIIDFIEKPADPP----GIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTS  229 (420)
T ss_dssp             EEEEEEEET---TGGGGSEEEEECTTSBEEEEEESCSSCC----CBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred             EEEEeecCc---cccCcccEEEECCCCcEEEeEeCCCccc----cccccccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence            333333311   1222343 34577899999988853211    0111  1368899999999998754 33322211  


Q ss_pred             -Ccc-cchhhhhhhhhCCceEEEEEe-----------cCCcCCCCCHHHHHHHHHHHHHh
Q 022555          246 -LQL-EEDLEQLKVLENGYKMKVIKV-----------DHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       246 -~~~-~d~~~~~~~~~~G~~v~~v~~-----------~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                       ..+ +|.+.  .++..| ++.++..           +++|+|||||+||..|+..+.++
T Consensus       230 ~~~~~~d~l~--~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~  286 (420)
T 3brk_X          230 SRDFGKDIIP--YIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDV  286 (420)
T ss_dssp             -------CTT--HHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSS
T ss_pred             cccchHHHHH--HHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCC
Confidence             111 22221  234456 8899888           77999999999999999877553

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.91  E-value=2e-23  Score=194.88  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=150.1

Q ss_pred             EEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc--CCeEEeCCCCCCC
Q 022555           51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRN  122 (295)
Q Consensus        51 ~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~--~~~v~~~~~~~~g  122 (295)
                      .+||||||.|+||+      ||+|++++|+|||+|+++++.+++ +++|+|+++++ +.+++.+.  ++.++..+....+
T Consensus         2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~-~~~i~vv~~~~-i~~~~~~~~~~i~~~~~~~~~~g   79 (401)
T 2ggo_A            2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCG-IRDITVIVSSK-NKEYFEKKLKEISIVTQKDDIKG   79 (401)
T ss_dssp             EEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTT-CCEEEEEECGG-GHHHHHHHCTTCEEEECCTTCCB
T ss_pred             eEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCC-CCEEEEEeCHH-HHHHhhccCCcEEEEeCCCCCCC
Confidence            49999999999995      799999999999999999999885 99999999977 66666544  5666654331223


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCce-EEEECCCCeEEE
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGYAIY  201 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~-~v~~d~~g~v~~  201 (295)
                      ...++..+++     .+.++++.||+|+.++++++++++    ..+..+.  ..+..     ++..+ .+..+++|++..
T Consensus        80 ~~~~l~~~~~-----~~~~lv~~~D~~~~~~~~~~~l~~----~~~~~i~--~~~~~-----~~~~~~~v~~~~~g~v~~  143 (401)
T 2ggo_A           80 TGAAILSAKF-----NDEALIIYGDLFFSNEKEICNIIT----LKENAII--GVKVS-----NPKDYGVLVLDNQNNLSK  143 (401)
T ss_dssp             STTTGGGCCC-----SSEEEEEETTEEESCSHHHHHHTT----CSSEEEE--EEECS-----CCSSSCEEEECTTSSEEE
T ss_pred             hHHHHHHhcc-----CCCEEEEeCccccccHHHHHHHHH----hcCCEEE--EEEcC-----CCcceeEEEECCCCeEEE
Confidence            3333333322     478999999999998889988876    2233333  23432     22223 344677789988


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC---CCCcccchhhhhhhhhCCceEEEEEecCCcCCCCC
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDA  278 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~---~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdt  278 (295)
                      |.+++..         ......++|+|+|+++.|..+....+   .+++.++.+.  .+ ..|.++..++.+..|+||||
T Consensus       144 ~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~-~~g~~v~~~~~~~~~~dI~t  211 (401)
T 2ggo_A          144 IIEKPEI---------PPSNLINAGIYKLNSDIFTYLDKISISERGELELTDAIN--LM-AKDHRVKVIEYEGYWMDIGK  211 (401)
T ss_dssp             EECSCSS---------CSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCHHHHHH--HH-HHHSCEEEEECCSCEEECCS
T ss_pred             EEECCCC---------CCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEHHHHHH--HH-HCCCcEEEEEecceEEcCCC
Confidence            8776421         12468899999999998876543321   2233333332  12 44678999988889999999


Q ss_pred             HHHHHHHHHHHHHh
Q 022555          279 PEDVEKIESFMRER  292 (295)
Q Consensus       279 peDl~~ae~ll~~r  292 (295)
                      |+||+.|+.++.++
T Consensus       212 ~edl~~a~~~l~~~  225 (401)
T 2ggo_A          212 PWNIIDVNKWALDN  225 (401)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988765

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=99.91  E-value=2.7e-23  Score=175.02  Aligned_cols=187  Identities=17%  Similarity=0.257  Sum_probs=131.5

Q ss_pred             CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~  124 (295)
                      |++.+||||||.|+||+ +|++++++|+|||+|+++++.+++ +++|+|++++  +.+.+++..+++.++.++....|..
T Consensus         4 ~~~~~iIlA~G~~~R~g~~K~l~~~~g~pll~~~l~~l~~~~-~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (197)
T 2wee_A            4 TQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAG-FDQLILTLGGAASAVRAAMALDGTDVVVVEDVERGCA   82 (197)
T ss_dssp             SEEEEEEEECCCCTTTSSCGGGSEETTEEHHHHHHHHHHHTT-CSEEEEEECTTHHHHHHHSCCTTSEEEECC----CCH
T ss_pred             CceEEEEECCCCcccCCCCeEcCeeCCccHHHHHHHHHHhcC-CCcEEEEeCCCHHHHHHHhccCCCEEEECCCcccCHH
Confidence            56889999999999995 899999999999999999999885 8999999875  4555555456788776554444667


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      .++..|+..+..+.+.+++++||+||+++++++++++. ..+. . +.+..                 .  +|..     
T Consensus        83 ~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-~~~~-~-i~~~~-----------------~--~g~~-----  135 (197)
T 2wee_A           83 ASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV-GPAT-E-IMVCR-----------------Y--ADGV-----  135 (197)
T ss_dssp             HHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH-GGGS-S-EEEEE-----------------E--TTEE-----
T ss_pred             HHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh-cCCC-C-EEEEe-----------------c--CCCc-----
Confidence            88999998873224789999999999999999999987 4322 2 22211                 0  1211     


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec-CCcCCCCCHHHH
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD-HEAHGVDAPEDV  282 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~-~~~idIdtpeDl  282 (295)
                                   +.|       ++|+++.+..+..+. .+.    ..  ..++. .|.++..++.+ ..|+|||||+||
T Consensus       136 -------------~~P-------~~~~~~~l~~l~~~~-~~~----~~--~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl  188 (197)
T 2wee_A          136 -------------GHP-------FWFSRTVFGELARLH-GDK----GV--WKLVHSGRHPVRELAVDGCVPLDVDTWDDY  188 (197)
T ss_dssp             -------------EEE-------EEEEGGGHHHHHTCC-STT----HH--HHHHHCTTSCEEEEECSSCCCCCCSSHHHH
T ss_pred             -------------CCC-------EEECHHHHHHHHhCC-CCh----hH--HHHHHhCcccEEEEEcCcccccCCCCHHHH
Confidence                         013       578887776544321 111    11  12333 36678888775 589999999999


Q ss_pred             HHHHHHH
Q 022555          283 EKIESFM  289 (295)
Q Consensus       283 ~~ae~ll  289 (295)
                      +.+++++
T Consensus       189 ~~~~~~~  195 (197)
T 2wee_A          189 RRLLESV  195 (197)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHh
Confidence            9987654

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.90  E-value=1.5e-23  Score=184.63  Aligned_cols=213  Identities=14%  Similarity=0.123  Sum_probs=143.2

Q ss_pred             EEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch-----HHHHHHHHcCC---eEEeCC
Q 022555           52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-----KIAECCQQFGA---DVIMTS  117 (295)
Q Consensus        52 aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~-----~i~~~~~~~~~---~v~~~~  117 (295)
                      +||||||.||||.      ||+|+|++|+|||+|+++++.+..++++|+|+++..     .+.+.+++++.   .++..+
T Consensus         2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (255)
T 4evw_A            2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKATQLGIKQFYIAELH   81 (255)
T ss_dssp             EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHHHHTCSSEEEEEES
T ss_pred             EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHHHcCCCCceEEEeC
Confidence            7999999999994      799999999999999999999822589999888742     23333344442   233333


Q ss_pred             CCCCCcHHHHHHHHHHcc----ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555          118 ESCRNGTERCNEALQKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV  193 (295)
Q Consensus       118 ~~~~g~~~~i~~al~~~~----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~  193 (295)
                      +...|...+++.|+..+.    ...+.+++++||+ +++...+..+    ....+..+.  +.++.     +|.+-.+..
T Consensus        82 ~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~-l~~~~~~~~~----~~~~~~~i~--~~~~~-----~p~yG~v~~  149 (255)
T 4evw_A           82 TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDT-FRPNFVFPDI----SQHSDGYLE--VFQGG-----GDNWSFAKP  149 (255)
T ss_dssp             SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTE-ECTTCCCCGG----GGSSSEEEE--EEECC-----SSCSCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCE-EEecchhHHH----hhcCCcEEE--EEecC-----CCceeEEEE
Confidence            344455578899988872    1346799999999 6654444432    233344333  34442     343334456


Q ss_pred             CCCC--eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHH-Hh----hc-ccCC----CCCCcccchhhhhhhhhCC
Q 022555          194 DNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF-LK----IY-PGLH----PTPLQLEEDLEQLKVLENG  261 (295)
Q Consensus       194 d~~g--~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~-l~----~~-~~~~----~~~~~~~d~~~~~~~~~~G  261 (295)
                      |++|  +|..|.||..           ....+++|+|+|++.. |.    .+ .+..    ..++..+|.+.  .++..|
T Consensus       150 d~~g~~~V~~i~EK~~-----------~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~--~li~~g  216 (255)
T 4evw_A          150 EHAGSTKVIQTAEKNP-----------ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYN--ELIQKG  216 (255)
T ss_dssp             SSTTCCBEEEEESSSC-----------SSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHH--HHHHTT
T ss_pred             CCCCCeEEEEEEeccC-----------ccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHH--HHHHCC
Confidence            7778  9999888731           2468999999999862 22    11 1111    23444555442  345688


Q ss_pred             ceEEEEEec-CCcCCCCCHHHHHHHHHHH
Q 022555          262 YKMKVIKVD-HEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       262 ~~v~~v~~~-~~~idIdtpeDl~~ae~ll  289 (295)
                      .+|.++..+ ++|+||+||+||+.+++.-
T Consensus       217 ~~v~~~~~~~~~w~digt~~~l~~~~~~~  245 (255)
T 4evw_A          217 LNIHYHLIARHEVIFCGVPDEYTDFLRQP  245 (255)
T ss_dssp             CCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred             CEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence            899999885 8999999999999998653

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.90  E-value=3.4e-22  Score=192.14  Aligned_cols=232  Identities=18%  Similarity=0.224  Sum_probs=163.9

Q ss_pred             CCCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHH----HcCC--eEE
Q 022555           46 FRSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ----QFGA--DVI  114 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~----~~~~--~v~  114 (295)
                      ....+.+||||||+||||.   ||+|+|++|+|||+|+++.+.++ ++++|+|++++  +.+++++.    .++.  .++
T Consensus         9 ~~~~~~vvILAaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~   87 (501)
T 3st8_A            9 FPGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKL-APQRLIVVLGHDHQRIAPLVGELADTLGRTIDVA   87 (501)
T ss_dssp             ---CEEEEEEECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHH-CCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             CCCCceEEEECCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence            3345788999999999995   79999999999999999999998 59999999973  55665553    3444  444


Q ss_pred             eCCCCCCCcHHHHHHHHHHcccc-CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE-EE
Q 022555          115 MTSESCRNGTERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CV  192 (295)
Q Consensus       115 ~~~~~~~g~~~~i~~al~~~~~~-~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~-v~  192 (295)
                      .++ +..|...+++.|+..+..+ .+.++++.+|.|+++.+++..+++.+++.. +.+++...++     .+|..|+ ++
T Consensus        88 ~q~-~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~-~~~ti~~~~~-----~dp~~yG~i~  160 (501)
T 3st8_A           88 LQD-RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVS-AAVTVLTTTL-----DDPFGYGRIL  160 (501)
T ss_dssp             ECS-SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT-CSEEEEEEEC-----SCCTTSCEEE
T ss_pred             EcC-CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhcc-ccceEeeecc-----CCchhccccc
Confidence            443 2234446788888888532 468999999999999999999999988653 3344444444     3555554 45


Q ss_pred             ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCC----CCcccchhhhhhhhhCCceEEEE
Q 022555          193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPT----PLQLEEDLEQLKVLENGYKMKVI  267 (295)
Q Consensus       193 ~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~----~~~~~d~~~~~~~~~~G~~v~~v  267 (295)
                      .+++|++..|.|++..     ...+.....+|+|+|+|+++.|..+.. +...    ++..++...  .+...|..+..+
T Consensus       161 ~~~~g~v~~ivEk~~~-----~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~--~~~~~g~~v~~~  233 (501)
T 3st8_A          161 RTQDHEVMAIVEQTDA-----TPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIA--ILRSDGQTVHAS  233 (501)
T ss_dssp             ECTTCCEEEEECGGGC-----CHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHH--HHHHTTCCEEEE
T ss_pred             cccceeEEeeccccCC-----ChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHH--HHHhcCceEEEE
Confidence            7889999998887421     011223468999999999999886443 3222    333343321  123478888888


Q ss_pred             EecC--CcCCCCCHHHHHHHHHHHHHh
Q 022555          268 KVDH--EAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       268 ~~~~--~~idIdtpeDl~~ae~ll~~r  292 (295)
                      ..+.  ....+++..++..++..+..|
T Consensus       234 ~~~~~~~~~g~n~~~~l~~~~~~~~~r  260 (501)
T 3st8_A          234 HVDDSALVAGVNNRVQLAELASELNRR  260 (501)
T ss_dssp             ECSSGGGGCCCSSHHHHHHHHHHHHHH
T ss_pred             eccchhhhcccccHHHHHHHHHHhhhh
Confidence            8764  456788888888888777665

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=99.89  E-value=7.5e-23  Score=173.32  Aligned_cols=184  Identities=16%  Similarity=0.141  Sum_probs=119.0

Q ss_pred             CceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHHcCCeEEeCCCCCCCcH
Q 022555           48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT  124 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~~~~~v~~~~~~~~g~~  124 (295)
                      |++.+||||||+|+||+ +|+|++++|+|||+|+++++.+.    +++|++++  +.+.+++. .++ ++.++....|+.
T Consensus         1 M~~~~iIlAgG~g~Rmg~~K~l~~i~g~pll~~~l~~l~~~----~ivvv~~~~~~~~~~~~~-~~~-~v~~~~~~~G~~   74 (197)
T 3d5n_A            1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDL----EKIIIVGKYVNEMLPLLM-DQI-VIYNPFWNEGIS   74 (197)
T ss_dssp             CCEEEEEECSCCTTCCCSSGGGSBSSSSBHHHHHHHHTTTS----BCCEEECTTHHHHGGGCT-TSC-EEECTTGGGCHH
T ss_pred             CceEEEEECCcCcccCCCCeeeCEeCceEHHHHHHHHHHhC----CEEEEECCCHHHHHHHhc-CCE-EEECCCCCCCHH
Confidence            56889999999999997 89999999999999999999754    77777775  34433333 466 665554445777


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeec
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR  204 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~  204 (295)
                      .++..|++.+. +.+.+++++||+||++++.++++++.+ +. +..+++.+                 .  +|..     
T Consensus        75 ~si~~al~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~-~~~~~~~~-----------------~--~g~~-----  127 (197)
T 3d5n_A           75 TSLKLGLRFFK-DYDAVLVALGDMPFVTKEDVNKIINTF-KP-NCKAVIPT-----------------H--KGER-----  127 (197)
T ss_dssp             HHHHHHHHHTT-TSSEEEEEETTCCCSCHHHHHHHHHTC-CT-TCSEEEEE-----------------E--TTEE-----
T ss_pred             HHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHh-cC-CCcEEEEE-----------------e--CCcc-----
Confidence            88999999885 247999999999999999999999877 33 22222211                 0  1110     


Q ss_pred             CCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhh-CCceEEEEEec--CCcCCCCCHHH
Q 022555          205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLE-NGYKMKVIKVD--HEAHGVDAPED  281 (295)
Q Consensus       205 ~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~-~G~~v~~v~~~--~~~idIdtpeD  281 (295)
                                   +.|       ++|+++.+.....+. ...   + .  ..++. .|.++..++.+  ..++|||||+|
T Consensus       128 -------------~~P-------~~~~~~~l~~l~~l~-g~~---~-~--~~~l~~~~~~v~~v~~~~~~~~~dIdTpeD  180 (197)
T 3d5n_A          128 -------------GNP-------VLISKSLFNEIEKLR-GDV---G-A--RVILNKIKIEELCFIECSEGVLIDIDKKED  180 (197)
T ss_dssp             -------------CSC-------EEEEHHHHHHHHHCC-TTC---C-T--HHHHTTSCGGGEEEEECCGGGTCCTTTC--
T ss_pred             -------------cCC-------EEECHHHHHHHHccC-CCc---c-H--HHHHHhCccCeEEEEcCCCCcccCCCCHHH
Confidence                         125       688888877544321 111   1 1  12222 45667788775  36799999999


Q ss_pred             HHHHHHHHHH
Q 022555          282 VEKIESFMRE  291 (295)
Q Consensus       282 l~~ae~ll~~  291 (295)
                      |+.+++++..
T Consensus       181 l~~~~~~~~~  190 (197)
T 3d5n_A          181 LMRLRDFHPL  190 (197)
T ss_dssp             ----------
T ss_pred             HHHHHHhhcc
Confidence            9999887654

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.89  E-value=1.8e-22  Score=191.34  Aligned_cols=238  Identities=13%  Similarity=0.171  Sum_probs=152.0

Q ss_pred             CCceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--C----
Q 022555           47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G----  110 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--~----  110 (295)
                      |+++.+||||||.|+||+      ||+|++++|+ |||+|+++++.++ ++++|+|+++.  +.+.+++.+ +  +    
T Consensus        18 ~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~   96 (451)
T 1yp2_A           18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGY   96 (451)
T ss_dssp             HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC------
T ss_pred             ccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHhhhhhcccccc
Confidence            335789999999999996      7999999999 9999999999988 59999999974  556555533 3  1    


Q ss_pred             -----CeEEeCCC------CCCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeC
Q 022555          111 -----ADVIMTSE------SCRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL  178 (295)
Q Consensus       111 -----~~v~~~~~------~~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~  178 (295)
                           +.++...+      ...|...+++.++..+.. ..+.+++++||+ +.+ .+++++++.+.++. +.+++...++
T Consensus        97 ~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~-~~~-~~l~~l~~~~~~~~-~~~tl~~~~~  173 (451)
T 1yp2_A           97 KNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDH-LYR-MDYEKFIQAHRETD-ADITVAALPM  173 (451)
T ss_dssp             --CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCE-ECC-CCHHHHHHHHHHTT-CSEEEEEEEE
T ss_pred             cccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcE-EEc-CCHHHHHHHHHHcC-CcEEEEEEEc
Confidence                 22332111      123445678888887742 247899999999 554 57899999887642 3333333333


Q ss_pred             CCCCCCCCCce-EEEECCCCeEEEeecCCCCCCCCCC------CC------CCCCceEEEeEEEecHHHHhhc-ccCCCC
Q 022555          179 KPEDAFDPNRV-KCVVDNHGYAIYFSRGLIPYNKSGK------VN------PQFPYLLHLGIQSYDSNFLKIY-PGLHPT  244 (295)
Q Consensus       179 ~~~~~~~p~~~-~v~~d~~g~v~~~~~~~i~~~r~~~------~~------~~~p~~~~~Giyif~~~~l~~~-~~~~~~  244 (295)
                      ..+   ++..+ .+..|++|++..|.|++.+......      ..      +...+.+++|+|+|++++|..+ ....+.
T Consensus       174 ~~~---~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~  250 (451)
T 1yp2_A          174 DEK---RATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG  250 (451)
T ss_dssp             CHH---HHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred             Chh---hcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence            211   12233 3346778999999988632000000      00      0124678999999999988543 333222


Q ss_pred             CCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHh
Q 022555          245 PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER  292 (295)
Q Consensus       245 ~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r  292 (295)
                      ..++.+.+ ...++..|.++.+++.+++|.||+||+||..|+..+.++
T Consensus       251 ~~~~~~~~-l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~  297 (451)
T 1yp2_A          251 ANDFGSEV-IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK  297 (451)
T ss_dssp             CCCTTTTH-HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred             ccchHhhH-HHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcc
Confidence            22232221 113455678999999888999999999999999877654

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.89  E-value=2e-22  Score=184.45  Aligned_cols=230  Identities=13%  Similarity=0.135  Sum_probs=147.8

Q ss_pred             CceEEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcC-CeEEeCCC
Q 022555           48 SRVVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG-ADVIMTSE  118 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~-~~v~~~~~  118 (295)
                      |++.+||||||.|+||.       ||+|++++| +|||+|+++++....++++|+|+++++....+.++.+ ..++..+ 
T Consensus         1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~~~~i~e~-   79 (337)
T 2cu2_A            1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEP-   79 (337)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSSSEEEEES-
T ss_pred             CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhccCceEecC-
Confidence            45789999999999992       899999999 9999999999998745899999998764433333333 3333332 


Q ss_pred             CCCCcH-HHHHHHHHHcc--ccCCEEEEEeCCcccCCHHHHHHHHHHHHh--CCCcEEEEeeeeCCCCCCCCCCceEEEE
Q 022555          119 SCRNGT-ERCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCVV  193 (295)
Q Consensus       119 ~~~g~~-~~i~~al~~~~--~~~d~vlv~~~D~Pli~~~~i~~li~~~~~--~~d~~v~v~~~~~~~~~~~~p~~~~v~~  193 (295)
                       ...++ .++..+.. +.  ...+.+++++||+|+.+++.++.+++.+.+  ..+..+++.+.+..++  ..++++  ..
T Consensus        80 -~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~--t~yG~I--~~  153 (337)
T 2cu2_A           80 -LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPE--TEYGYI--RL  153 (337)
T ss_dssp             -SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCC--SSSCEE--EE
T ss_pred             -CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCC--CCceEE--EE
Confidence             22333 34555544 32  125789999999999999888888776521  1245555544443211  112222  23


Q ss_pred             CCC----CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHH-hhcccCCCCCCc----------ccchhhhh---
Q 022555          194 DNH----GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL-KIYPGLHPTPLQ----------LEEDLEQL---  255 (295)
Q Consensus       194 d~~----g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l-~~~~~~~~~~~~----------~~d~~~~~---  255 (295)
                      +++    +++..|.|||.. .+........ +++|+|+|+|+++.| ..+.+..++.++          ..+.+..+   
T Consensus       154 ~~~~~~~~~V~~f~EKp~~-~~a~~~~~~g-~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T 2cu2_A          154 GPREGAWYRGEGFVEKPSY-AEALEYIRKG-YVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKI  231 (337)
T ss_dssp             EEEETTEEEEEEEECCCCH-HHHHHHHHTT-CEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCC
T ss_pred             CCcccccCeEEEEEeCCCh-HHHHHHhhcC-CEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccc
Confidence            544    788899888531 1000000011 689999999999887 434332221110          01112111   


Q ss_pred             ----hhhhCCceEEEEEecCCcCCCCCHHHHHHHH
Q 022555          256 ----KVLENGYKMKVIKVDHEAHGVDAPEDVEKIE  286 (295)
Q Consensus       256 ----~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae  286 (295)
                          .+++.|.++.+++.+..|.||++++||..+.
T Consensus       232 sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          232 SIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             CHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             hHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence                2466778899999999999999999998874

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.89  E-value=3.6e-22  Score=182.60  Aligned_cols=226  Identities=17%  Similarity=0.228  Sum_probs=144.6

Q ss_pred             EEEEEcCCCCCCCC-------CccccccCC-cchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcC-CeEEeCCC
Q 022555           51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFG-ADVIMTSE  118 (295)
Q Consensus        51 ~aiIlAaG~gsRl~-------~K~l~~i~g-kpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~-~~v~~~~~  118 (295)
                      .+||||||.||||+       ||+|++++| +|||+|+++++....++++|+|+++++.   +.+.+.+.+ ..++..+.
T Consensus         3 ~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~~~ii~e~~   82 (336)
T 2x65_A            3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPM   82 (336)
T ss_dssp             EEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCGGGEEEESS
T ss_pred             EEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccccceEEeCCC
Confidence            59999999999994       799999999 9999999999998645899999998653   333332221 24555443


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH----HHhCCCcEEEEeeeeCCCCCCCCCCceEE-EE
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA----LQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VV  193 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~----~~~~~d~~v~v~~~~~~~~~~~~p~~~~v-~~  193 (295)
                       ..|...++..|...+. +.+.+++++||+|+.+++.++.+++.    +.+. +..+++.+.+..++     ..++. ..
T Consensus        83 -~~gta~ai~~a~~~~~-~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~-~~~vt~~i~p~~~~-----~~yG~I~~  154 (336)
T 2x65_A           83 -KKNTAPACFIGTKLAD-DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKY-DGLFTFGIVPTRPE-----TGYGYIEI  154 (336)
T ss_dssp             -CCCHHHHHHHHHTTSC-TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHH-CSEEEEEECCCSCC-----SSSEEEEE
T ss_pred             -CCCcHHHHHHHHHhhC-CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhc-CCeEEEEeecccCC-----CCceEEEE
Confidence             2344455666665543 34689999999999998887666654    3332 24444443443211     12322 23


Q ss_pred             CCC-----CeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh-hcccCCCCCC-----------cc-cchhhhh
Q 022555          194 DNH-----GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK-IYPGLHPTPL-----------QL-EEDLEQL  255 (295)
Q Consensus       194 d~~-----g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~-~~~~~~~~~~-----------~~-~d~~~~~  255 (295)
                      +++     +++..|.|||.. .+.........+++|+|+|+|+++.|. .+.+..++.+           ++ .+.+..+
T Consensus       155 ~~~~~~~~~~V~~f~EKp~~-~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~  233 (336)
T 2x65_A          155 GEELEEGVHKVAQFREKPDL-ETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKV  233 (336)
T ss_dssp             EEEEETTEEEEEEEEESCCH-HHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHS
T ss_pred             CCccCCCccEEEEEEECCCh-HHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhC
Confidence            443     688899998632 100000001136899999999998873 3322221110           10 1111111


Q ss_pred             -------hhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555          256 -------KVLENGYKMKVIKVDHEAHGVDAPEDVEKI  285 (295)
Q Consensus       256 -------~~~~~G~~v~~v~~~~~~idIdtpeDl~~a  285 (295)
                             .+++.+.++.+++.+..|.||++++||..+
T Consensus       234 ~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          234 PSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             CCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             ccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence                   245667889999999999999999999887

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.88  E-value=7.1e-23  Score=177.46  Aligned_cols=214  Identities=17%  Similarity=0.182  Sum_probs=125.0

Q ss_pred             CCCCCCCceEEEEEcCCCCCCC-C-CccccccCCcchHHHHHHHHhhCCCCCeEEEECC-chHHHHH-HHHcC--CeEEe
Q 022555           42 RSKNFRSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD-DEKIAEC-CQQFG--ADVIM  115 (295)
Q Consensus        42 ~~~~~~~~i~aiIlAaG~gsRl-~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~-~~~i~~~-~~~~~--~~v~~  115 (295)
                      ..++.|+++.+||||||.|+|| + ||+|++++|+|||+|+++++.++  +++|+|++. .+++.+. .++++  +.++.
T Consensus        11 ~~~~~m~~~~~iIlA~G~g~R~~~~~K~l~~i~g~pli~~~l~~l~~~--~~~i~vv~~~~~~~~~~~~~~~~~~~~~v~   88 (232)
T 2xme_A           11 IFAGRIKLMKAVILAAGLGTRLGGVPKPLVRVGGCEIILRTMKLLSPH--VSEFIIVASRYADDIDAFLKDKGFNYKIVR   88 (232)
T ss_dssp             -----CCCEEEEEEECC------CCCGGGCEETTEEHHHHHHHHHGGG--EEEEEEEESTTHHHHHHHHTTSCCCEEEEE
T ss_pred             hhhcccccceEEEECCcCcCcCCCCCcEEeEECCEEHHHHHHHHHHHh--CCEEEEEeCChHHHHHHHHHhcCCcEEEEE
Confidence            3344477789999999999999 4 79999999999999999999876  789999883 3455444 34444  34444


Q ss_pred             CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555          116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN  195 (295)
Q Consensus       116 ~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~  195 (295)
                      ++....|...++..|+..+.   +.+++++||+|+ +++.++++++.    .+  ..+. ......+.  .+..++..+ 
T Consensus        89 ~~~~~~g~~~~i~~a~~~~~---~~~lv~~~D~p~-~~~~~~~l~~~----~~--~~~~-~~~~~~~~--~~~~~v~~~-  154 (232)
T 2xme_A           89 HDRPEKGNGYSLLVAKNHVE---DRFILTMGDHVY-SQQFIEKAVRG----EG--VIAD-REPRFVDI--GEATKIRVE-  154 (232)
T ss_dssp             CSCGGGCHHHHHHTTGGGCC---SSEEEEETTEEE-CHHHHHHHTTC----CE--EEEE-SSCSSSCT--TTSCEEEEE-
T ss_pred             CCCCCCCcHHHHHHHHHHCC---CCEEEEcCCccc-CHHHHHHHHhC----CC--cEEE-ccccccCC--CcceEEEEc-
Confidence            43333455678888888773   458899999997 88888877652    12  1221 11000011  123344444 


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCC-CCCcccchhhhhhhhhCCceEEEEEec-CCc
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVIKVD-HEA  273 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~-~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~  273 (295)
                      +|++..+.+++.   +        ....+.|+|+|+++.+..+..... .+....      .++..+ ++..+..+ ..|
T Consensus       155 ~g~v~~~~~~~~---~--------~~~~~~g~~~~~~~~~~~l~~~~~~g~~~l~------~ll~~~-~v~~~~~~~~~~  216 (232)
T 2xme_A          155 DGRVAKIGKDLR---E--------FDCVDTGFFVLDDSIFEHAEKLRDREEIPLS------EIVKLA-RLPVTYVDGELW  216 (232)
T ss_dssp             TTEEEEEETTCS---S--------CSEEEEEEEEECTTHHHHHGGGTTSSCCCHH------HHHHHH-TCBEEECCSCCE
T ss_pred             CCEEEEeecCCC---C--------cceEEEEEEEECHHHHHHHHHHHhcChhHHH------HHHHcC-CEEEEEECCCCE
Confidence            788888776531   1        245789999999998876544321 111111      223332 35555554 689


Q ss_pred             CCCCCHHHHHHHHHHH
Q 022555          274 HGVDAPEDVEKIESFM  289 (295)
Q Consensus       274 idIdtpeDl~~ae~ll  289 (295)
                      +|||||+||+.|++++
T Consensus       217 ~dI~tpeDl~~a~~~l  232 (232)
T 2xme_A          217 MDVDTKEDVRRANRAL  232 (232)
T ss_dssp             EEEECC----------
T ss_pred             EeCCCHHHHHHHHhhC
Confidence            9999999999988764

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=99.88  E-value=1.7e-21  Score=166.44  Aligned_cols=107  Identities=19%  Similarity=0.215  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch-HHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555           51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE-KIAECCQQFGADVIMTSESCRNGTERCN  128 (295)
Q Consensus        51 ~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~-~i~~~~~~~~~~v~~~~~~~~g~~~~i~  128 (295)
                      .+||||||+|+||+ +|+|++++|+|||+|+++++.+.    +|+|+++++ .+..+.+.+++.++.++....|+..++.
T Consensus         2 ~aiILAgG~s~Rmg~~K~ll~~~G~pli~~~~~~l~~~----~vvvv~~~~~~~~~~~~~~~~~~v~d~~~~~G~~~si~   77 (208)
T 3ngw_A            2 KVAVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKYSPF----QTVFVCRDEKQAEKLSSRYEAEFIWDLHKGVGSIAGIH   77 (208)
T ss_dssp             EEEEECCCCCTTTTSCGGGCEETTEEHHHHHHHHHTTS----EEEEECSSHHHHHHHHTTSCSCEECCTTCCCSHHHHHH
T ss_pred             EEEEECCCchhhCCCCCcccEECCeeHHHHHHHHhcCC----CEEEEECCHHHHHHHHHhcCCeEEecCCCCCChHHHHH
Confidence            59999999999997 89999999999999999999854    899999853 4444444478887765444446678899


Q ss_pred             HHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       129 ~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      .|+..+   .+++ +++||+||++++.++++++.+.+
T Consensus        78 ~gl~~~---~~~v-v~~~D~P~i~~~~i~~l~~~~~~  110 (208)
T 3ngw_A           78 AALRHF---GSCV-VAAIDMPFVKPEVLEHLYKEGEK  110 (208)
T ss_dssp             HHHHHH---SSEE-EEETTCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHc---CCCE-EEECCccCCCHHHHHHHHHHhhc
Confidence            999887   4788 99999999999999999998874

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=99.88  E-value=1.2e-22  Score=187.66  Aligned_cols=199  Identities=16%  Similarity=0.204  Sum_probs=136.4

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc-hHHHHHHHHcCCeEEeCCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~-~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      ||++.+||||||+|+||+   +|+|++++|+|||+|+++++.+++.+++|+|++++ +.+.++++  ++.++.   ...+
T Consensus         1 Mmki~aIILAaG~ssRmg~~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~~~~~i~~~~~--~v~~v~---~g~g   75 (371)
T 1w55_A            1 MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTK--NYEFIE---GGDT   75 (371)
T ss_dssp             -CCEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHHHHTTCS--SSEEEE---CCSS
T ss_pred             CCccEEEEECCCCCccCCCCCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcCCHHHHHHHhC--CCEEEe---CCCC
Confidence            578899999999999997   79999999999999999999986679999999983 22222221  255442   1234


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      ...++..|+..+.  .+.+++++||+||+++++++++++.+.+. ++.+.+  .++.       +.++..   .      
T Consensus        76 ~~~sv~~aL~~l~--~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~a~i~~--~~~~-------d~vk~v---~------  134 (371)
T 1w55_A           76 RAESLKKALELID--SEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPA--LKVA-------DTTLFD---N------  134 (371)
T ss_dssp             HHHHHHHHHTTCC--SSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEE--ECCC-------SCEEET---T------
T ss_pred             hHHHHHHHHHhcC--CCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCEEEE--EEee-------cCeeee---e------
Confidence            5578899998874  58999999999999999999999987654 443322  2321       122211   0      


Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhh-hCCceEEEEEecCCcCCCCCHHH
Q 022555          203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL-ENGYKMKVIKVDHEAHGVDAPED  281 (295)
Q Consensus       203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~-~~G~~v~~v~~~~~~idIdtpeD  281 (295)
                       +.   .+|+..+..++|       ++|+.+.+........  . .++..   .++ ..|.++..++.+..++|||||+|
T Consensus       135 -~t---~~r~~l~~~~~P-------~~f~~~~l~~~~~~~~--~-~td~~---~ll~~~g~~V~~v~~~~~~~dIdTpeD  197 (371)
T 1w55_A          135 -EA---LQREKIKLIQTP-------QISKTKLLKKALDQNL--E-FTDDS---TAIAAMGGKIWFVEGEENARKLTFKED  197 (371)
T ss_dssp             -EE---ECGGGCCEECSC-------EEEEHHHHHHHTSSCC--C-CSSHH---HHHHTTTCCEEEEECCGGGCCCCSGGG
T ss_pred             -ee---cCccceeecCCc-------ceecHHHHHHHHHhcc--c-ccCHH---HHHHhCCCcEEEEECCccccCCCCHHH
Confidence             00   022222233456       8899887765433211  1 22221   222 25788998887778999999999


Q ss_pred             HHHHHHHH
Q 022555          282 VEKIESFM  289 (295)
Q Consensus       282 l~~ae~ll  289 (295)
                      |+.|+ ++
T Consensus       198 L~~Ae-ll  204 (371)
T 1w55_A          198 LKKLD-LP  204 (371)
T ss_dssp             GGGSC-CC
T ss_pred             HHHHH-Hh
Confidence            99988 65

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=99.88  E-value=2.7e-22  Score=170.37  Aligned_cols=187  Identities=20%  Similarity=0.204  Sum_probs=121.2

Q ss_pred             eCCCCCCCC-ceEEEEEcCCCCCCCC-CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc-CCeEEeC
Q 022555           40 LGRSKNFRS-RVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMT  116 (295)
Q Consensus        40 ~~~~~~~~~-~i~aiIlAaG~gsRl~-~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~-~~~v~~~  116 (295)
                      |.++.+.+| ++.+||||||+|+||+ +|+|++++|+|||+|+++++.+.  +++|+|+++++..    +.+ +++++.+
T Consensus         4 ~~~~~~~~~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~----~~~~~~~~v~~   77 (201)
T 2e8b_A            4 FTWRKGSLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK----FSFLNAPVVLD   77 (201)
T ss_dssp             CCSSTTTSCSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG----GGGGTCCEEEC
T ss_pred             cccccCCcccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH----hhcCCceEEec
Confidence            445566554 5789999999999998 99999999999999999999875  8899999986543    223 6777765


Q ss_pred             CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHH-HHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECC
Q 022555          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG-VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN  195 (295)
Q Consensus       117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~-li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~  195 (295)
                      +....|...++..|+..+.  .+.+++++||+||++++.++. ++    + .+.++.                    .. 
T Consensus        78 ~~~~~g~~~~i~~al~~~~--~~~~lv~~~D~P~i~~~~i~~~l~----~-~~~~v~--------------------~~-  129 (201)
T 2e8b_A           78 EFEESASIIGLYTALKHAK--EENVFVLSGDLPLMKKETVLYVLE----N-FKEPVS--------------------VA-  129 (201)
T ss_dssp             CCSSCCHHHHHHHHHHHCS--SSEEEEEETTCTTCCHHHHHHHHH----T-CCSSEE--------------------EE-
T ss_pred             CCCCCCcHHHHHHHHHHcC--CCCEEEEeCCcCcCCHHHHHHHHh----c-CCEEEE--------------------ec-
Confidence            5445577788999998874  578999999999999999998 87    2 232211                    00 


Q ss_pred             CCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC-CCCCCcccchhhhhhhhhCCceEEEEEec--CC
Q 022555          196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVIKVD--HE  272 (295)
Q Consensus       196 ~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~-~~~~~~~~d~~~~~~~~~~G~~v~~v~~~--~~  272 (295)
                      +|+                      .....|+| |+++.+..+... ...+....+      ++.. .++..+..+  ..
T Consensus       130 ~g~----------------------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~------~l~~-~~~~~~~~~~~~~  179 (201)
T 2e8b_A          130 KTE----------------------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWA------LLKD-VGYNEVEIPEELR  179 (201)
T ss_dssp             ESS----------------------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHH------HHHH-HCCEEEECCGGGG
T ss_pred             CCc----------------------eeeEEEEE-eChhHHHHHHHHHHcCCchHHH------HHHH-CCeEEeccccccc
Confidence            111                      12456788 888876644321 111222222      1211 235555553  46


Q ss_pred             cC--CCCCHHHHHHHHHHHH
Q 022555          273 AH--GVDAPEDVEKIESFMR  290 (295)
Q Consensus       273 ~i--dIdtpeDl~~ae~ll~  290 (295)
                      ++  |||||+||+.+++.++
T Consensus       180 ~~~~dintpedl~~~~~~~~  199 (201)
T 2e8b_A          180 YTLLNMNTKEDLKRILAIEN  199 (201)
T ss_dssp             GGGCCSCCC-----------
T ss_pred             hhhcCCCCHHHHHHHHHHhh
Confidence            88  9999999999988764

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=1.2e-21  Score=165.25  Aligned_cols=109  Identities=21%  Similarity=0.270  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHH-c----CCeEEeCCCCCC
Q 022555           51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ-F----GADVIMTSESCR  121 (295)
Q Consensus        51 ~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~-~----~~~v~~~~~~~~  121 (295)
                      .+||||||+|+||+  +|+|++++|+|||+|+++++.+++ +++|+|+++  .+.+.+++.. +    ++.++..  ...
T Consensus         2 ~aiIlA~G~s~R~~~~~K~l~~~~g~pli~~~l~~l~~~~-~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~   78 (196)
T 3rsb_A            2 DALIMAGGKGTRMGGVEKPLIKLCGRCLIDYVVSPLLKSK-VNNIFIATSPNTPKTKEYINSAYKDYKNIVVIDT--SGK   78 (196)
T ss_dssp             EEEEEC----CGGGGSCGGGCEETTEEHHHHHHHHHHSSS-CCCEEEECCTTCHHHHHHHHHHTTTTTEEEE--------
T ss_pred             EEEEECCCCCCcCCCCCccEEEECCEEHHHHHHHHHHHCC-CCEEEEEeCCChHHHHHHHHhhccCCCCEEEEEC--CCC
Confidence            59999999999997  599999999999999999999886 999999996  4566666654 3    2333322  222


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA  165 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~  165 (295)
                      |...++..|+..+   .+.+++++||+||+++++++++++.+.+
T Consensus        79 g~~~si~~al~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           79 GYIEDLNECIGYF---SEPFLVVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             --CCCCCTTTTTC---SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence            3334567777766   4789999999999999999999999875

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=99.86  E-value=2.1e-21  Score=165.01  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=91.8

Q ss_pred             CCCCceEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCC-C
Q 022555           45 NFRSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESC-R  121 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~-~  121 (295)
                      ..||++.+||||||+|+||+  +|+|++++|+|||+|+++++..  .+++|+|+++.+. ..+ .+.++.++.++... .
T Consensus         2 ~~mm~~~~iILAgG~s~Rmg~~~K~ll~i~G~pli~~~l~~l~~--~~~~ivvv~~~~~-~~~-~~~~~~~v~~~~~~~~   77 (201)
T 1e5k_A            2 NLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMT--QLSHVVVNANRHQ-EIY-QASGLKVIEDSLADYP   77 (201)
T ss_dssp             --CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHH--HCSCEEEECSSSH-HHH-HTTSCCEECCCTTCCC
T ss_pred             CCCCcceEEEEcCCCCCcCCCCCCceeeECceeHHHHHHHHHHh--hCCEEEEEcCCcH-HHH-hhcCCeEEecCCCCCC
Confidence            44788999999999999996  8999999999999999999984  4899999998654 233 34677776554332 4


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHH
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA  162 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~  162 (295)
                      |...++..|+..+.  .+.+++++||+||+++++++.+++.
T Consensus        78 G~~~si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           78 GPLAGMLSVMQQEA--GEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             SHHHHHHHHHHHCC--SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             CHHHHHHHHHHhCC--CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            66778999999884  5899999999999999999999986

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=99.85  E-value=3.7e-21  Score=166.91  Aligned_cols=197  Identities=19%  Similarity=0.185  Sum_probs=130.1

Q ss_pred             CceEEEEEcCCC---CCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFA---SSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~---gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |++.+||||||.   |+||+  ||+|++++|+|||+|+++++.+.+ + +|+|+++.+.+.+++   ++.+    ....|
T Consensus         1 m~~~~vIlAaG~tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~-~-~ivvv~~~~~i~~~~---~~~~----~~~~g   71 (232)
T 2dpw_A            1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAG-L-SPVYVGENPGLVPAP---ALTL----PDRGG   71 (232)
T ss_dssp             CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTT-C-EEEEESCCSSCSSCC---SEEE----CCCSS
T ss_pred             CceeEEEECCCCCccccccCCCCceeeEECCEEHHHHHHHHHHhcC-C-EEEEEeChHHHhhhc---CeEe----cCCCC
Confidence            467899999999   99986  799999999999999999999885 5 888887754332221   4443    23446


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEe
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF  202 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~  202 (295)
                      ...++..|+..+.   +.+++++||+||+++++++++++ +..+.+  +++.+.+....+...|. .      .+++..+
T Consensus        72 ~~~~i~~a~~~~~---~~~lv~~~D~P~~~~~~i~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~-~------~~~v~~~  138 (232)
T 2dpw_A           72 LLENLEQALEHVE---GRVLVATGDIPHLTEEAVRFVLD-KAPEAA--LVYPIVPKEAVEARFPR-T------KRTYARL  138 (232)
T ss_dssp             HHHHHHHHHHTCC---SEEEEEETTCTTCCHHHHHHHHH-HCCSCS--EEEEEEEHHHHHHHCTT-C------CCCCEEE
T ss_pred             HHHHHHHHHHHcC---CCEEEEeCCcccCCHHHHHHHHh-cCCCCC--EEEEEeeccchhhhCCC-c------ceeEEEE
Confidence            6678999998873   78999999999999999999999 532223  33332321000000111 0      1234433


Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC------CC--------------------CCCcccchhhhhh
Q 022555          203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL------HP--------------------TPLQLEEDLEQLK  256 (295)
Q Consensus       203 ~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~------~~--------------------~~~~~~d~~~~~~  256 (295)
                      .++               ...++|+|+|+++.+..+...      ..                    .++..++.+.  .
T Consensus       139 ~ek---------------~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~--~  201 (232)
T 2dpw_A          139 REG---------------TFTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEA--R  201 (232)
T ss_dssp             TTE---------------EEEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHH--H
T ss_pred             ecC---------------ceeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHH--H
Confidence            332               137899999999987644220      00                    1222233221  1


Q ss_pred             hh-hCCceEEEEEec--CCcCCCCCHHHHH
Q 022555          257 VL-ENGYKMKVIKVD--HEAHGVDAPEDVE  283 (295)
Q Consensus       257 ~~-~~G~~v~~v~~~--~~~idIdtpeDl~  283 (295)
                      +. ..|.++..+..+  +.|+|||||+||+
T Consensus       202 ~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          202 AQRILGVEARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             HHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred             HHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence            22 257889999884  4799999999985

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=99.38  E-value=6.4e-12  Score=119.46  Aligned_cols=184  Identities=11%  Similarity=0.106  Sum_probs=108.1

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhCC---CCC-eEEEECC---chHHHHHHHHc---CCe
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQF---GAD  112 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~~---~i~-~IvVv~~---~~~i~~~~~~~---~~~  112 (295)
                      ..++.+||||||.||||+   ||.++++. |+|||+|+++++++..   ++. .++|+++   ++.+.++++++   +.+
T Consensus        90 ~~k~avViLAGG~GTRmgs~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~~  169 (488)
T 2i5k_A           90 LSKLAVLKLNGGLGTSMGCVGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRIR  169 (488)
T ss_dssp             GGGEEEEEECCCBSGGGTCCSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSCE
T ss_pred             cCCceEEEEcCCCcccCCCCCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCce
Confidence            467889999999999997   89999998 9999999999987652   122 3556554   46677777653   344


Q ss_pred             EE-e-CC----------------------CCCCCcHHHHHHH------HHHcc-ccCCEEEEEeCCcccCCHHHHHHHHH
Q 022555          113 VI-M-TS----------------------ESCRNGTERCNEA------LQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVK  161 (295)
Q Consensus       113 v~-~-~~----------------------~~~~g~~~~i~~a------l~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~  161 (295)
                      +. + +.                      ...+.|+..++.+      +..+. ...++++++++|. ++...++. ++.
T Consensus       170 i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~-~L~  247 (488)
T 2i5k_A          170 IRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLK-ILN  247 (488)
T ss_dssp             EEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHH-HHH
T ss_pred             EEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHH-HHH
Confidence            42 2 11                      0134454443333      34342 2357999999999 88766775 446


Q ss_pred             HHHhCCCcEEEEeeeeCCCCCCCCCCc-eEEEECCCCeEEEeecCCCC-CCCCCCCCCCCCceEEEeEEEecHHHHhhc
Q 022555          162 ALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNHGYAIYFSRGLIP-YNKSGKVNPQFPYLLHLGIQSYDSNFLKIY  238 (295)
Q Consensus       162 ~~~~~~d~~v~v~~~~~~~~~~~~p~~-~~v~~d~~g~v~~~~~~~i~-~~r~~~~~~~~p~~~~~Giyif~~~~l~~~  238 (295)
                      .+.++ ++.+++.+++.+     +|.. ++++...+|++.-...+..+ ..++.......-..+|+|+|+|+.++|...
T Consensus       248 ~~~~~-~a~~t~~v~~~~-----~p~~~yG~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~  320 (488)
T 2i5k_A          248 HMIET-GAEYIMELTDKT-----RADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRL  320 (488)
T ss_dssp             HHHHS-CCSEEEEEEECC-----GGGSSSCEEEEETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred             HHHhc-CCcEEEEEEEec-----CCCCceeEEEEECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHH
Confidence            55443 233444444432     2322 43333336663322222221 011000001113478999999999988753

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=99.29  E-value=1.7e-11  Score=104.28  Aligned_cols=102  Identities=21%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             eEEEEEc--CCCCCCCCC---ccccccCCcchHHHHHHHHhhCCCCCeE-EEECCchHHHHHHHHcCCeEEeCCCCCCCc
Q 022555           50 VVGIIPA--RFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHL-VVATDDEKIAECCQQFGADVIMTSESCRNG  123 (295)
Q Consensus        50 i~aiIlA--aG~gsRl~~---K~l~~i~gkpLl~~~l~~l~~~~~i~~I-vVv~~~~~i~~~~~~~~~~v~~~~~~~~g~  123 (295)
                      +.+||++  |...|||++   +......++||++|+++++++.+ ++.+ +|+++++....+   .++.++.++   .|.
T Consensus         4 ~~~vip~k~g~~KtRL~~~l~~~~~~~l~~~ll~~vl~~l~~~~-~~~v~vvv~~~~~~~~~---~~~~~v~~~---~gl   76 (211)
T 2i5e_A            4 MRAVIPYKKAGAKSRLSPVLSLQEREEFVELMLNQVISSLKGAG-IEQVDILSPSVYGLEEM---TEARVLLDE---KDL   76 (211)
T ss_dssp             CEEEEECCCTTTTGGGTTTSCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESSCTTCSSC---CSSEEEECC---SCH
T ss_pred             eEEEEEeCCCCCccccCccCCHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEEcCcHHHHhh---cCCEEEECC---CCH
Confidence            4699999  778889863   22233567999999999999874 8899 899876543222   467776654   455


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHH
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK  161 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~  161 (295)
                      .+++..+++..   .+.++++.||+|++++++++++++
T Consensus        77 ~~sl~~a~~~~---~~~vlvi~~D~P~l~~~~i~~l~~  111 (211)
T 2i5e_A           77 NEALNRYLKEA---EEPVLIVMADLPLLSPEHIKEISS  111 (211)
T ss_dssp             HHHHHHHHHHC---CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             HHHHHHHHHhc---CCCEEEEcCCcCCCCHHHHHHHHc
Confidence            56788888776   468999999999999999999987

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=99.23  E-value=3.3e-10  Score=108.11  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=106.1

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhh--------CC---CCCeEEEECC--chHHHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL--------AT---TLDHLVVATD--DEKIAECCQQ  108 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~--------~~---~i~~IvVv~~--~~~i~~~~~~  108 (295)
                      .++.+||||||.||||+   ||+++++   .|+|+|++.++++.+        .+   .+..+++.+.  ++.+.+++++
T Consensus       101 ~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~  180 (505)
T 1jv1_A          101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK  180 (505)
T ss_dssp             TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred             CceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHHh
Confidence            56889999999999998   8999999   799999999999765        12   2555555555  4567777654


Q ss_pred             ---cCCe---E--EeCC-------------------CCCCCcHHHHHHHHH------Hcc-ccCCEEEEEeCCcccCCHH
Q 022555          109 ---FGAD---V--IMTS-------------------ESCRNGTERCNEALQ------KLE-KKYDIVVNIQGDEPLIEPE  154 (295)
Q Consensus       109 ---~~~~---v--~~~~-------------------~~~~g~~~~i~~al~------~~~-~~~d~vlv~~~D~Pli~~~  154 (295)
                         +|+.   +  +.+.                   +..+.|+.+++.++.      .+. ...++++++++|+++....
T Consensus       181 ~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~  260 (505)
T 1jv1_A          181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA  260 (505)
T ss_dssp             TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred             hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccc
Confidence               3442   3  2210                   112344444555443      221 1248999999999866321


Q ss_pred             HHHHHHHHHHhCCCcEEEEeeee-CCCCCCCCCCceEEEECCCCeE--EEeecCCCCCCCCCCC--CCCCCceEEEeEEE
Q 022555          155 IIDGVVKALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYA--IYFSRGLIPYNKSGKV--NPQFPYLLHLGIQS  229 (295)
Q Consensus       155 ~i~~li~~~~~~~d~~v~v~~~~-~~~~~~~~p~~~~v~~d~~g~v--~~~~~~~i~~~r~~~~--~~~~p~~~~~Giyi  229 (295)
                       ...++..+.++ ++.+++.+++ +.     .+..++++...+|++  +.+.+.+.. .++...  ....-...|+|+|+
T Consensus       261 -d~~~lg~~~~~-~~~~~~~v~~k~~-----~~e~~Gvl~~~dg~~~vvEy~E~p~~-~~~~~~~~g~~~~~~~N~~~~~  332 (505)
T 1jv1_A          261 -DPRFIGFCIQK-GADCGAKVVEKTN-----PTEPVGVVCRVDGVYQVVEYSEISLA-TAQKRSSDGRLLFNAGNIANHF  332 (505)
T ss_dssp             -CHHHHHHHHHT-TCSEEEEEEECCS-----TTCSCCEEEEETTEEEEECGGGSCHH-HHHCBCTTSSBSSCEEEEEEEE
T ss_pred             -hHHHHHHHHHc-CCCEEEEEEEccC-----CccCcceEEEECCeEEEEEEeeCCHH-HhhhcccccccccceeeEEEEE
Confidence             22455555543 2333443343 21     223444443335654  444444311 110000  01112578999999


Q ss_pred             ecHHHHhhc
Q 022555          230 YDSNFLKIY  238 (295)
Q Consensus       230 f~~~~l~~~  238 (295)
                      |+.++|...
T Consensus       333 f~l~~L~~i  341 (505)
T 1jv1_A          333 FTVPFLRDV  341 (505)
T ss_dssp             EEHHHHHHH
T ss_pred             ecHHHHHHH
Confidence            999988753

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=98.94  E-value=2.7e-08  Score=91.95  Aligned_cols=181  Identities=17%  Similarity=0.185  Sum_probs=104.2

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhh------------CCCCCeEEEECC--chHHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKL------------ATTLDHLVVATD--DEKIAECCQ  107 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~------------~~~i~~IvVv~~--~~~i~~~~~  107 (295)
                      .++.+|+||||.||||+   ||.+.++   .|+|++++.++.+++            ...+..++..+.  ++.+.++++
T Consensus        34 gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~  113 (405)
T 3oc9_A           34 GKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK  113 (405)
T ss_dssp             TCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred             CceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence            46889999999999997   8999999   899999999998853            123554444444  467777776


Q ss_pred             H---cCCe---EE--eC-------------------CCCCCCcHHHHHHHHHH------cc-ccCCEEEEEeCCcccCCH
Q 022555          108 Q---FGAD---VI--MT-------------------SESCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLIEP  153 (295)
Q Consensus       108 ~---~~~~---v~--~~-------------------~~~~~g~~~~i~~al~~------~~-~~~d~vlv~~~D~Pli~~  153 (295)
                      +   +|+.   +.  .+                   ....+.|...++.+|..      +. ..-+++++...|.++...
T Consensus       114 ~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~~  193 (405)
T 3oc9_A          114 EHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKD  193 (405)
T ss_dssp             HTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCCS
T ss_pred             hCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCccccc
Confidence            4   2431   21  10                   01223444445555432      21 234789999999988743


Q ss_pred             HHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCC-CceEEEECCCC--eEEEeecCCCCCCCCCCCCCC---CCceEEEeE
Q 022555          154 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHG--YAIYFSRGLIPYNKSGKVNPQ---FPYLLHLGI  227 (295)
Q Consensus       154 ~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p-~~~~v~~d~~g--~v~~~~~~~i~~~r~~~~~~~---~p~~~~~Gi  227 (295)
                      . .-.++..+.+. ++.++..+++.+     +| ..++++...+|  +++.+.+-+.  ..+ .+...   .-+..|+++
T Consensus       194 ~-Dp~~lg~~~~~-~~d~~~kvv~k~-----~~dek~Gvl~~~dg~~~vvEysei~~--e~e-~~~~~g~l~fn~~Ni~~  263 (405)
T 3oc9_A          194 V-DPNMIGYMDLL-QSEICIKIVKKG-----FKEEKVGVLVKEQERIKVVEYTELTD--ELN-KQLSNGEFIYNCGHISI  263 (405)
T ss_dssp             S-CHHHHHHHHHT-TCSEEEEEEECC-----STTCSCCEEEEETTEEEEECGGGCCT--TTT-CBCTTSCBSSCEEEEEE
T ss_pred             C-CHHHHHHHHHc-CCCEEEEEEECC-----CCCCccceEEEECCeeEEEEEeeCCH--HHh-hcCCCCceeeccceeEe
Confidence            2 22344444432 233344334432     12 23444433345  5555555331  111 11111   123567899


Q ss_pred             EEecHHHHhhc
Q 022555          228 QSYDSNFLKIY  238 (295)
Q Consensus       228 yif~~~~l~~~  238 (295)
                      ++|+.++|...
T Consensus       264 h~fs~~fL~~i  274 (405)
T 3oc9_A          264 NGYSTSFLEKA  274 (405)
T ss_dssp             EEEEHHHHHHH
T ss_pred             eecCHHHHHHh
Confidence            99999999853

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=98.81  E-value=9.6e-09  Score=97.70  Aligned_cols=180  Identities=13%  Similarity=0.057  Sum_probs=100.9

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhCC-----CCCeEEEECC---chHHHHHHH-H---cCC-
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT-----TLDHLVVATD---DEKIAECCQ-Q---FGA-  111 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~~-----~i~~IvVv~~---~~~i~~~~~-~---~~~-  111 (295)
                      ++.+||||||.||||+   ||++++++ |+|+|++.++++.+.+     .+ .+++.+.   ++.+.++++ +   +|+ 
T Consensus        75 k~avViLAGGlGTRLg~~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~i-p~viMtS~~t~e~t~~~f~~~~~~fGl~  153 (505)
T 2oeg_A           75 STVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHL-RFMLMDSFNTSASTKSFLKARYPWLYQV  153 (505)
T ss_dssp             TEEEEEEECCCCGGGTCCSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTC-EEEEEECHHHHHHHHHHHHHHCHHHHTT
T ss_pred             cceEEEEcCCcccccCCCCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCc-CEEEEeCCCCHHHHHHHHhhhhhccCCC
Confidence            6889999999999997   89999999 9999999999998652     13 4555554   466777765 3   344 


Q ss_pred             --eE--EeC---------------------CCCCCCcHHHHHHHH------HHcc-ccCCEEEEEeCCcccCCHHHHHHH
Q 022555          112 --DV--IMT---------------------SESCRNGTERCNEAL------QKLE-KKYDIVVNIQGDEPLIEPEIIDGV  159 (295)
Q Consensus       112 --~v--~~~---------------------~~~~~g~~~~i~~al------~~~~-~~~d~vlv~~~D~Pli~~~~i~~l  159 (295)
                        .+  +.+                     .+..+.|+.+++.++      +.+. ...++++++++|.. ....+. .+
T Consensus       154 ~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL-~~~~D~-~l  231 (505)
T 2oeg_A          154 FDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNL-GATIDK-RV  231 (505)
T ss_dssp             CCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCT-TCCCCH-HH
T ss_pred             ccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcc-ccccCH-HH
Confidence              22  200                     011223444444433      3321 23578999999994 322223 55


Q ss_pred             HHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEEC-------CCCe-------EEEeecCCCCCCCCCCCCCCCC-ceE
Q 022555          160 VKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVD-------NHGY-------AIYFSRGLIPYNKSGKVNPQFP-YLL  223 (295)
Q Consensus       160 i~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d-------~~g~-------v~~~~~~~i~~~r~~~~~~~~p-~~~  223 (295)
                      +..+.+ +.+.  ++.+++.+.  ..  ..++++..       .+|+       +.-.....+|..-...+..... .+.
T Consensus       232 lg~~~~~~ad~--~~~v~~k~~--~d--~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~  305 (505)
T 2oeg_A          232 LAYMEKEKIDF--LMEVCRRTE--SD--KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFF  305 (505)
T ss_dssp             HHHHHHHTCSE--EEEEEECCT--TC--CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEE
T ss_pred             HHHHHhcCCcE--EEEEEEecC--Cc--cceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcccCccccCee
Confidence            555543 3333  333344421  11  12444433       5677       3322112122110000011122 357


Q ss_pred             EEeEEEecHHHHhh
Q 022555          224 HLGIQSYDSNFLKI  237 (295)
Q Consensus       224 ~~Giyif~~~~l~~  237 (295)
                      |++...|+-+++..
T Consensus       306 Ninn~~~~l~~l~~  319 (505)
T 2oeg_A          306 NTNNLWIRLPVLLE  319 (505)
T ss_dssp             EEEEEEEEHHHHHH
T ss_pred             EEEEEEEEHHHHHH
Confidence            99999999998875

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=98.81  E-value=2.1e-08  Score=95.25  Aligned_cols=182  Identities=19%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCC-------------CCCeEEEECC--chHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-------------TLDHLVVATD--DEKIAECC  106 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~-------------~i~~IvVv~~--~~~i~~~~  106 (295)
                      .++.+||||||.||||+   ||++++++   |+|+|++.++++.+..             .+..++..++  ++.+.+++
T Consensus       102 gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~  181 (486)
T 2yqc_A          102 GEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFF  181 (486)
T ss_dssp             TCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHH
T ss_pred             CCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHH
Confidence            36789999999999997   89999999   9999999999998641             2555555554  45567777


Q ss_pred             HH---cCCe---EE--eC-------CCC-------------CCCcHHHHHHHHHH------c-cccCCEEEEEeCCcccC
Q 022555          107 QQ---FGAD---VI--MT-------SES-------------CRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLI  151 (295)
Q Consensus       107 ~~---~~~~---v~--~~-------~~~-------------~~g~~~~i~~al~~------~-~~~~d~vlv~~~D~Pli  151 (295)
                      ++   +|+.   +.  .+       .+.             .+.|...++.++..      + ...-+++.+...|..++
T Consensus       182 ~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~  261 (486)
T 2yqc_A          182 IENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLV  261 (486)
T ss_dssp             HHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTC
T ss_pred             hhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCcee
Confidence            54   3431   21  10       110             23344455555432      2 12357899999999887


Q ss_pred             CHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEECC--CCe--EEEeecCCCCCCCCCCCC----CCCCce
Q 022555          152 EPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDN--HGY--AIYFSRGLIPYNKSGKVN----PQFPYL  222 (295)
Q Consensus       152 ~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~--~g~--v~~~~~~~i~~~r~~~~~----~~~p~~  222 (295)
                      ...+. .++..+.+ +.+  ++..+++.+.  ..  ..++++...  +|+  ++.+.+.+.. .++....    ....+.
T Consensus       262 ~~~Dp-~~lg~~~~~~~~--~~~~vv~k~~--~~--e~~Gvl~~~~~dg~~~vvEy~E~~~~-~~~~~~~~~~~~~~~~~  333 (486)
T 2yqc_A          262 KVADP-IFIGFAIAKKFD--LATKVVRKRD--AN--ESVGLIVLDQDNQKPCVIEYSEISQE-LANKKDPQDSSKLFLRA  333 (486)
T ss_dssp             CTTCH-HHHHHHHHHTCS--EEEEEEECCS--TT--CCCCEEEEETTTTEEEEECGGGSCHH-HHHCEETTEEEEESSCE
T ss_pred             eccCH-HHHHHHHHcCCC--EEEEEEEcCC--CC--CceeEEEEEecCCCEEEEEEecCCHH-Hhhcccccccccccccc
Confidence            32221 23444433 333  3333333311  11  123443322  564  5555554310 0100000    001357


Q ss_pred             EEEeEEEecHHHHhh
Q 022555          223 LHLGIQSYDSNFLKI  237 (295)
Q Consensus       223 ~~~Giyif~~~~l~~  237 (295)
                      .|+|.++|+.++|..
T Consensus       334 ~Ni~~~~~~l~~L~~  348 (486)
T 2yqc_A          334 ANIVNHYYSVEFLNK  348 (486)
T ss_dssp             EEEEEEEEEHHHHHH
T ss_pred             eeEEEEEEeHHHHHH
Confidence            899999999999876

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=97.89  E-value=3.7e-05  Score=66.47  Aligned_cols=118  Identities=17%  Similarity=0.115  Sum_probs=74.7

Q ss_pred             CCceEEEEEcC----C-CCCCCC----CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHH-----HHHHHHcCCe
Q 022555           47 RSRVVGIIPAR----F-ASSRFE----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQFGAD  112 (295)
Q Consensus        47 ~~~i~aiIlAa----G-~gsRl~----~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i-----~~~~~~~~~~  112 (295)
                      |++...||++.    | .-|||.    +..-..+ -++|+.++++.+.+.+ .+.++++++++..     ..+. ..++.
T Consensus         2 ~~~~~liv~~K~P~~g~~KTRL~~~l~~~~aa~l-~~~ll~~tl~~~~~~~-~~~vvvvt~~~~~~~~~~~~~~-~~~~~   78 (242)
T 3cgx_A            2 MSESCILFFVKYPEPGKVKTRLGEVVGNDKAAML-YRHFVQDMLQGLARLH-ADLHICYVPGDADLPEKFKAWL-GPQHM   78 (242)
T ss_dssp             CCSEEEEEEECCCCTTTSCHHHHHHHCHHHHHHH-HHHHHHHHHHHHTTSS-SEEEEEECCCCTTHHHHHHHHH-CTTSE
T ss_pred             CCCCEEEEEeCCCCCCCcccccCccCCHHHHHHH-HHHHHHHHHHHHHhCC-CCEEEEEcCCchhhhhhhhhhc-cCCcE
Confidence            34455666663    2 446663    1111122 2689999999998874 6777777764222     2222 12343


Q ss_pred             EEeCCCCCCCcHHHHHHHHHHc-cccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          113 VIMTSESCRNGTERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       113 v~~~~~~~~g~~~~i~~al~~~-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      +  .++...+...++.+|+..+ ....+.++++.+|+|++++++|+++++.+.+ .+.+
T Consensus        79 ~--~~q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~~-~d~V  134 (242)
T 3cgx_A           79 F--AAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQH-YDAA  134 (242)
T ss_dssp             E--EECCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTTT-CSEE
T ss_pred             E--ecCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhcc-CCeE
Confidence            3  3333334456888888775 3345789999999999999999999987764 3443

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A

Probab=97.83  E-value=0.00061  Score=64.63  Aligned_cols=188  Identities=11%  Similarity=0.054  Sum_probs=103.7

Q ss_pred             CCCCCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhhC----CCCCeEEEECC---chHHHHHHHHc---
Q 022555           44 KNFRSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLA----TTLDHLVVATD---DEKIAECCQQF---  109 (295)
Q Consensus        44 ~~~~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~~----~~i~~IvVv~~---~~~i~~~~~~~---  109 (295)
                      +....++.+|+||||.|+|||   ||.++++. |+++++..+++++..    +..-..+|.|+   ++.+.++++++   
T Consensus       122 ~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~f  201 (528)
T 3r3i_A          122 SSVLNKLVVVKLNGGLGTSMGCKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHC  201 (528)
T ss_dssp             CTTCTTEEEEEECCCBCTTTTCSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTTS
T ss_pred             hhhcCceEEEEeCCCCccccCCCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCcc
Confidence            345678999999999999997   89999995 899999999998754    21224566665   35555555543   


Q ss_pred             CCeE--EeCC-------------------------CCCCCcHHHHHHHHHH------c-cccCCEEEEEeCCcccCCHHH
Q 022555          110 GADV--IMTS-------------------------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEI  155 (295)
Q Consensus       110 ~~~v--~~~~-------------------------~~~~g~~~~i~~al~~------~-~~~~d~vlv~~~D~Pli~~~~  155 (295)
                      +.++  +.+.                         ...+.|...++.+|..      + ...-+++.+...|+++... +
T Consensus       202 g~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~v-D  280 (528)
T 3r3i_A          202 RVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATV-D  280 (528)
T ss_dssp             SCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCC-C
T ss_pred             CCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccccc-C
Confidence            2332  1110                         0122333345555432      2 1245799999999987653 1


Q ss_pred             HHHHHHHHHhC---CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCC-CCCCCCCCCCC-ceEEEeEEEe
Q 022555          156 IDGVVKALQAA---PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY-NKSGKVNPQFP-YLLHLGIQSY  230 (295)
Q Consensus       156 i~~li~~~~~~---~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~-~r~~~~~~~~p-~~~~~Giyif  230 (295)
                      . .++..+.+.   .++.++.-+++-+.  ..  ..++++...+|+..-.....+|. ..+ .+..... .+.|++...|
T Consensus       281 p-~~Lg~~~~~~~~~~~d~~~kVv~Kt~--~d--ek~Gvl~~~dGk~~vvEyseip~e~~~-~~~g~~~f~~~Ntnnlw~  354 (528)
T 3r3i_A          281 L-YILNHLMNPPNGKRCEFVMEVTNKTR--AD--VKGGTLTQYEGKLRLVEIAQVPKAHVD-EFKSVSKFKIFNTNNLWI  354 (528)
T ss_dssp             H-HHHHHHSSCSSSCCCSEEEEECCCCT--TC--CSSCEEECSSSSCEEECTTSSCGGGTT-TSSCSSSCCCCEEEEEEE
T ss_pred             H-HHHHHHHhcccccCCcEEEEEeEccc--cC--CcccEEEEECCeEEEEEecCCChhHhh-ccCCcccCCeEEEEEEEE
Confidence            1 233333321   12333333332211  01  12444555566543222222221 111 1112223 3579999999


Q ss_pred             cHHHHhhc
Q 022555          231 DSNFLKIY  238 (295)
Q Consensus       231 ~~~~l~~~  238 (295)
                      +-++|.+.
T Consensus       355 ~L~~L~~v  362 (528)
T 3r3i_A          355 SLAAVKRL  362 (528)
T ss_dssp             EHHHHHHH
T ss_pred             EHHHHHHH
Confidence            99998753

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*

Probab=96.76  E-value=0.0011  Score=64.08  Aligned_cols=63  Identities=10%  Similarity=0.048  Sum_probs=49.9

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccC---CcchHHHHHHHHhhCCCC-CeEEEECC---chHHHHHHHHcCC
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLATTL-DHLVVATD---DEKIAECCQQFGA  111 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~---gkpLl~~~l~~l~~~~~i-~~IvVv~~---~~~i~~~~~~~~~  111 (295)
                      ++.+|+||||.|+|||   ||.+++++   |+++++..++++++..++ -.++|.|+   ++.+.+++++++.
T Consensus       114 kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl  186 (630)
T 3ogz_A          114 KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQL  186 (630)
T ss_dssp             GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTC
T ss_pred             hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCC
Confidence            7889999999999998   89999996   999999999998853222 24666665   4677777777654

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}

Probab=96.34  E-value=0.004  Score=58.54  Aligned_cols=60  Identities=8%  Similarity=0.034  Sum_probs=46.3

Q ss_pred             ceEEEEEcCCCCCCCC---Ccccccc-CCcchHHHHHHHHhhC----CCCCeEEEECC---chHHHHHHHH
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLA----TTLDHLVVATD---DEKIAECCQQ  108 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i-~gkpLl~~~l~~l~~~----~~i~~IvVv~~---~~~i~~~~~~  108 (295)
                      ++.+|+||||.|||||   ||.++++ .|+++++..+++++..    +..-.++|.|+   ++.+.+++++
T Consensus        76 kvavvlLaGGlGTRLG~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k  146 (484)
T 3gue_A           76 QAVVLKLNGGLGTGMGLNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRK  146 (484)
T ss_dssp             TEEEEEEECCCCGGGTCSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGG
T ss_pred             hcEEEEEcCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHh
Confidence            7899999999999997   8999999 7899999999988742    11125667665   4566666653

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=96.09  E-value=0.088  Score=44.36  Aligned_cols=94  Identities=15%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             cchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHHc----CCeEEeCCCC------CCCc-HHHHHHHHHHccccCC
Q 022555           74 KPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQF----GADVIMTSES------CRNG-TERCNEALQKLEKKYD  139 (295)
Q Consensus        74 kpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~~----~~~v~~~~~~------~~g~-~~~i~~al~~~~~~~d  139 (295)
                      ...|..+++.+.+...-+ +|+|+-+  .+...++++++    ++.++..+..      ...| ..+...|++..  ..+
T Consensus        13 ~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a--~g~   90 (255)
T 1qg8_A           13 SDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMA--EGE   90 (255)
T ss_dssp             TTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--CCS
T ss_pred             HHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHc--CCC
Confidence            457788888887543222 6777654  34555555544    4555544310      1233 34456777776  478


Q ss_pred             EEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          140 IVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       140 ~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      +++++++|. ++.+..+..+++.+.++++..
T Consensus        91 ~i~~lD~Dd-~~~~~~l~~~~~~~~~~~~~~  120 (255)
T 1qg8_A           91 YITYATDDN-IYMPDRLLKMVRELDTHPEKA  120 (255)
T ss_dssp             EEEEEETTE-EECTTHHHHHHHHHHHCTTCC
T ss_pred             EEEEeCCCC-ccChHHHHHHHHHHHhCCCce
Confidence            999999999 568899999999998765443

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=95.76  E-value=0.14  Score=45.48  Aligned_cols=108  Identities=18%  Similarity=0.125  Sum_probs=70.9

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHHHHHHcCCeEEeC------
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQFGADVIMT------  116 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~~~~~~~~~v~~~------  116 (295)
                      ++++.+||++-.              ....|..+++.+.+..  ...+|+||-+  .+...+++++++..+...      
T Consensus        47 ~~~vSViIp~yN--------------~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~  112 (329)
T 3ckj_A           47 GRTISVVLPALD--------------EEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPE  112 (329)
T ss_dssp             TCCEEEEEEESS--------------CTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTT
T ss_pred             CCcEEEEEeeCC--------------CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeecc
Confidence            467888888753              2345677888876542  2357887764  355566777777664321      


Q ss_pred             CCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          117 SESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       117 ~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      .+...|-..++..|++..  ..|+++++++|.-.+.++.+..+++.+.++++..
T Consensus       113 ~~~n~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~  164 (329)
T 3ckj_A          113 VPIRPGKGEALWRSLAAS--RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVH  164 (329)
T ss_dssp             SCCCCSHHHHHHHHHHHC--CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCC
T ss_pred             CCCCCCHHHHHHHHHHhC--CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCcc
Confidence            222234345567788776  4689999999995368899999999876554443

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=95.72  E-value=0.19  Score=41.76  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=66.2

Q ss_pred             CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC-eEEEECC--chH----HHHHHHHc-CCeEEeCC
Q 022555           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEK----IAECCQQF-GADVIMTS  117 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~----i~~~~~~~-~~~v~~~~  117 (295)
                      .++++.+||++-.              ....|..+++.+.+...-+ +|+||-+  .+.    ++++..++ .+.++. .
T Consensus         3 ~~p~vsViIp~yn--------------~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~   67 (240)
T 3bcv_A            3 LIPKVSVIVPIYN--------------VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-K   67 (240)
T ss_dssp             CCCSEEEEEEESS--------------CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-C
T ss_pred             CCCcEEEEEecCC--------------CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-C
Confidence            3567888888653              2346788888887543222 6776654  222    23333333 344443 2


Q ss_pred             CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCc
Q 022555          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDA  169 (295)
Q Consensus       118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~  169 (295)
                       .-.|...+.-.|++..  ..++++++++|. ++.+..++.+++.+.+ +.+.
T Consensus        68 -~n~G~~~a~N~g~~~a--~g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~~~~~  116 (240)
T 3bcv_A           68 -KNAGLGMACNSGLDVA--TGEYVAFCDSDD-YVDSDMYMTMYNVAQKYTCDA  116 (240)
T ss_dssp             -CCCCHHHHHHHHHHHC--CSSEEEECCTTC-CCCTTHHHHHHHHHHHHTCSE
T ss_pred             -CCCChHHHHHHHHHHc--CCCEEEEECCCC-cCCHHHHHHHHHHHHhcCCCE
Confidence             2234445566788877  468999999998 6789999999998876 4343

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=95.70  E-value=0.12  Score=51.96  Aligned_cols=93  Identities=18%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             chHHHHHHHHhhCCCCC---eEEEECCc--h-------------------HHHHHHHHcCCeEEeCCCCCCCcHHHHHHH
Q 022555           75 PMIQRTWERSKLATTLD---HLVVATDD--E-------------------KIAECCQQFGADVIMTSESCRNGTERCNEA  130 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i~---~IvVv~~~--~-------------------~i~~~~~~~~~~v~~~~~~~~g~~~~i~~a  130 (295)
                      .+++.+++.+.+...-+   +|+|+.+.  +                   .++++++++++.++.+++...|-...+..|
T Consensus       154 ~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~~~~~GKa~alN~g  233 (802)
T 4hg6_A          154 DMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEHAKAGNMSAA  233 (802)
T ss_dssp             HHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEecCCCCcchHHHHHH
Confidence            36688999987654332   68888762  1                   233445667888776654322333457788


Q ss_pred             HHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       131 l~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      ++..  ..|.++++++|. ..+++.++++++.+.++++..
T Consensus       234 l~~a--~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~v~  270 (802)
T 4hg6_A          234 LERL--KGELVVVFDADH-VPSRDFLARTVGYFVEDPDLF  270 (802)
T ss_dssp             HHHC--CCSEEEECCTTE-EECTTHHHHHHHHHHHSSSCC
T ss_pred             HHhc--CCCEEEEECCCC-CcChHHHHHHHHHHhcCCCeE
Confidence            8877  478999999999 568999999999997665543

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=95.64  E-value=0.096  Score=48.02  Aligned_cols=113  Identities=19%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCC------C
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTS------E  118 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~------~  118 (295)
                      .+++.+|||+-.....+          ...|..+.+.+++.+...+|+||-+  .+...+++++++..++...      +
T Consensus        93 ~p~vSVVIP~yNe~~~l----------~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~  162 (387)
T 3f1y_A           93 GLTVSAVLPSRNVADTV----------GGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYG  162 (387)
T ss_dssp             TCCEEEEEEESSCTTTH----------HHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGC
T ss_pred             CCeEEEEEEcCCCHHHH----------HHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCC
Confidence            57789999986544333          1233333333344443458888765  3555677777777664321      1


Q ss_pred             CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       119 ~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      ...|-..++..|++..  ..|+++++++|.-..+++.+..+++.+.+++++.+
T Consensus       163 ~n~G~g~A~n~G~~~A--~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~  213 (387)
T 3f1y_A          163 DAHGKGDAMWRALSVT--RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRF  213 (387)
T ss_dssp             SCCSHHHHHHHHTTTC--CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCE
T ss_pred             ccCCHHHHHHHHHHhc--CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceE
Confidence            1223334566777766  46899999999943689999999999976544433

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=94.75  E-value=0.4  Score=44.62  Aligned_cols=108  Identities=7%  Similarity=0.042  Sum_probs=70.5

Q ss_pred             CCCceEEEEEcCCCCCCCCCccccccCCc-chHHHHHHHHhhCCCC---CeEEEECC--ch-H----HHHHHHHcC--Ce
Q 022555           46 FRSRVVGIIPARFASSRFEGKPLVNILGK-PMIQRTWERSKLATTL---DHLVVATD--DE-K----IAECCQQFG--AD  112 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gk-pLl~~~l~~l~~~~~i---~~IvVv~~--~~-~----i~~~~~~~~--~~  112 (295)
                      .++++.+||++-.              .. ..|..+++.+.+...-   .+|+||-+  .+ .    ++++.++++  +.
T Consensus        27 ~~p~vSVIIp~yN--------------~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~   92 (472)
T 1xhb_A           27 NLPTTSVVIVFHN--------------EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVH   92 (472)
T ss_dssp             CCCCEEEEEEESS--------------CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEE
T ss_pred             CCCCeEEEEEeCC--------------CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEE
Confidence            4667888888643              23 5778888888764322   27777764  22 2    334444444  55


Q ss_pred             EEeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          113 VIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       113 v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      ++..++ -.|...+...|++..  ..|.++++++|. .+++..|+.+++.+.++++.++
T Consensus        93 vi~~~~-n~G~~~a~N~g~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~~v  147 (472)
T 1xhb_A           93 VIRMEQ-RSGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVV  147 (472)
T ss_dssp             EEECSS-CCCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEE
T ss_pred             EEECCC-CCChHHHHHHHHHhc--cCCeEEEECCCe-EeCccHHHHHHHHHHhCCCEEE
Confidence            554432 234445566778776  478999999998 5789999999999987665443

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=94.28  E-value=0.26  Score=46.44  Aligned_cols=110  Identities=6%  Similarity=0.022  Sum_probs=69.4

Q ss_pred             CCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC---eEEEECC---chHHHHHHHHc-CCeEEeCC
Q 022555           45 NFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD---HLVVATD---DEKIAECCQQF-GADVIMTS  117 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~---~IvVv~~---~~~i~~~~~~~-~~~v~~~~  117 (295)
                      ..++++.+||++-...             ...|..+++.+.+...-.   +|+||-+   ++.+.....+. ++.++..+
T Consensus        63 ~~~p~vSVIIp~yN~~-------------~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~  129 (501)
T 2ffu_A           63 VDLPATSVVITFHNEA-------------RSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRND  129 (501)
T ss_dssp             SSCCCEEEEEEESSCC-------------HHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECS
T ss_pred             cCCCCEEEEEEeCcCc-------------HHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECC
Confidence            3466788888864322             126788888776432222   7777764   34434444333 35555433


Q ss_pred             CCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       118 ~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      + -.|...+...|++..  ..|.++++++|. .++++.|..+++.+.+++..++
T Consensus       130 ~-n~G~~~A~N~G~~~A--~gd~i~flD~D~-~~~p~~L~~ll~~~~~~~~~vv  179 (501)
T 2ffu_A          130 R-REGLMRSRVRGADAA--QAKVLTFLDSHC-ECNEHWLEPLLERVAEDRTRVV  179 (501)
T ss_dssp             S-CCHHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCHHHHHHHHHHCTTEEE
T ss_pred             C-CcCHHHHHHHHHHhc--CCCEEEEECCCc-ccCccHHHHHHHHHHhCCCeEE
Confidence            2 223344566778777  478999999999 5688999999999987655443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=93.58  E-value=0.31  Score=47.09  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=70.0

Q ss_pred             CCCCCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCC--CCCeEEEECC--chHHHHHHHHc----CCeEE
Q 022555           43 SKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATD--DEKIAECCQQF----GADVI  114 (295)
Q Consensus        43 ~~~~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~--~i~~IvVv~~--~~~i~~~~~~~----~~~v~  114 (295)
                      +...++++.+||++-.              ....|..+++.+....  .-.+|+|+-+  .+...++++++    ++.++
T Consensus        88 ~~~~~p~vsviIp~~n--------------~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i  153 (625)
T 2z86_A           88 KQLIIDGLSIVIPTYN--------------RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV  153 (625)
T ss_dssp             --CCCCCEEEEEEESS--------------CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEE
T ss_pred             ccccCCcEEEEEecCC--------------cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEE
Confidence            3344567888888642              2357788898887642  1236777654  34445555543    45555


Q ss_pred             eCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc
Q 022555          115 MTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA  169 (295)
Q Consensus       115 ~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~  169 (295)
                      ..+....|...+.-.|+...  ..+.++++++|. .+++..+..+++.+.++++.
T Consensus       154 ~~~~~~~g~~~a~N~g~~~a--~g~~v~~lD~D~-~~~~~~l~~~~~~~~~~~~~  205 (625)
T 2z86_A          154 RQKDYGYQLCAVRNLGLRAA--KYNYVAILDCDM-APNPLWVQSYMELLAVDDNV  205 (625)
T ss_dssp             EECCCSCCHHHHHHHHHHHC--CSSEEEEECTTE-EECTTHHHHHHHHHHHCTTE
T ss_pred             EeCCCCcchhHHHHHHHHhC--CcCEEEEECCCC-CCCHHHHHHHHHHHhcCCce
Confidence            44322112334556778777  478999999999 45899999999999876543

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=93.20  E-value=0.51  Score=45.34  Aligned_cols=109  Identities=10%  Similarity=0.088  Sum_probs=68.4

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCC---eEEEECC---chH----HHHHHHHc-CCeEEe
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD---HLVVATD---DEK----IAECCQQF-GADVIM  115 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~---~IvVv~~---~~~----i~~~~~~~-~~~v~~  115 (295)
                      ++++.+||++-...             -..|..+++.+.+...-+   +||||-+   ++.    ++++++++ .+.++.
T Consensus       111 ~P~vSVIIp~yNe~-------------~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~  177 (570)
T 2d7i_A          111 LPNTSIIIPFHNEG-------------WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILR  177 (570)
T ss_dssp             CCCEEEEEEESSCC-------------HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEE
T ss_pred             CCCeEEEEEECCCC-------------HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEE
Confidence            45677777754322             157788888876533222   6777764   222    23333333 355554


Q ss_pred             CCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555          116 TSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (295)
Q Consensus       116 ~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~  172 (295)
                      .++ -.|-..+...|++..  ..|.++++++|. .+++..|+.+++.+.++++.+++
T Consensus       178 ~~~-n~G~~~A~N~G~~~A--~gd~i~fLD~D~-~~~p~~L~~ll~~l~~~~~~vv~  230 (570)
T 2d7i_A          178 TKK-REGLIRTRMLGASVA--TGDVITFLDSHC-EANVNWLPPLLDRIARNRKTIVC  230 (570)
T ss_dssp             CSS-CCCHHHHHHHHHHHC--CSSEEEECCSSE-EECTTCSHHHHHHHHHCTTEEEE
T ss_pred             CCC-CCCHHHHHHHHHHhc--CCCEEEEEcCCc-cccccHHHHHHHHHHhCCCEEEe
Confidence            432 234445566778776  468999999999 45889999999999877665443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=92.90  E-value=0.76  Score=44.29  Aligned_cols=94  Identities=14%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CCcchHHHHHHHHhhCCCCC-eEEEECC--chHHHHHHHH----c-CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEE
Q 022555           72 LGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQ----F-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN  143 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i~-~IvVv~~--~~~i~~~~~~----~-~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv  143 (295)
                      +....|..+++.+.+....+ +|+|+-+  .+...+++++    . .+.++. . .-.|...+...|++..  ..|++++
T Consensus       385 n~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~-~-~n~G~~~a~n~g~~~a--~g~~i~~  460 (625)
T 2z86_A          385 NCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS-Q-KNKGIGSASNTAVRLC--RGFYIGQ  460 (625)
T ss_dssp             SCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE-E-CCCCHHHHHHHHHHHC--CSSEEEE
T ss_pred             CCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe-C-CCCCHHHHHHHHHHhc--CCCEEEE
Confidence            34567888998887543333 6666653  2323333332    2 344443 2 2234445567788776  4689999


Q ss_pred             EeCCcccCCHHHHHHHHHHHHhCCCcE
Q 022555          144 IQGDEPLIEPEIIDGVVKALQAAPDAV  170 (295)
Q Consensus       144 ~~~D~Pli~~~~i~~li~~~~~~~d~~  170 (295)
                      +++|. .+.+..++.+++.+.++++..
T Consensus       461 ld~D~-~~~~~~l~~~~~~~~~~~~~~  486 (625)
T 2z86_A          461 LDSDD-FLEPDAVELCLDEFRKDLSLA  486 (625)
T ss_dssp             CCTTC-EECTTHHHHHHHHHHHCTTCS
T ss_pred             ECCCc-ccChhHHHHHHHHHHhCCCee
Confidence            99998 568999999999887665543

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=89.08  E-value=3.2  Score=37.95  Aligned_cols=48  Identities=17%  Similarity=0.159  Sum_probs=35.1

Q ss_pred             CcHHHHHHHH----HHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          122 NGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       122 g~~~~i~~al----~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      |-..++..|+    ...  ..|.+++++||.=-.+++.+.++++.+.++.|.++
T Consensus        75 GkG~Al~~G~~~Al~~a--~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g~D~V~  126 (397)
T 2bo4_A           75 GKGDGMNTALRYFLEET--QWERIHFYDADITSFGPDWITKAEEAADFGYGLVR  126 (397)
T ss_dssp             SHHHHHHHHHHHHHHHC--CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCHHHHHHHHHHHHcCCCEEE
Confidence            4445678888    554  47899999999622589999999998876545443

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=88.65  E-value=0.89  Score=44.53  Aligned_cols=94  Identities=10%  Similarity=0.100  Sum_probs=59.5

Q ss_pred             CCcchHHHHHHHHhhCC----CCCeEEEECCc-------hHHHHHHHHc--CCeEEeCCCCCCCcHHHHHHHHHHccc--
Q 022555           72 LGKPMIQRTWERSKLAT----TLDHLVVATDD-------EKIAECCQQF--GADVIMTSESCRNGTERCNEALQKLEK--  136 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~----~i~~IvVv~~~-------~~i~~~~~~~--~~~v~~~~~~~~g~~~~i~~al~~~~~--  136 (295)
                      ++...|..+|+.+.+..    ...+|+||-+.       +.+.+.++..  .+.++..+  -.|...+.-.|+.....  
T Consensus       190 N~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~--N~G~a~a~N~Gl~~A~g~~  267 (657)
T 4fix_A          190 NRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP--NLGGSGGYSRVMYEALKNT  267 (657)
T ss_dssp             SCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC--CCCHHHHHHHHHHHHHhcC
Confidence            55678899999887542    23477777541       1334444332  35555432  22334445555655421  


Q ss_pred             cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 022555          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD  168 (295)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d  168 (295)
                      +.|++++++.|. .++++.|..+++.+..+++
T Consensus       268 ~~dyIlfLD~D~-~~~pd~L~~ll~~l~~~~~  298 (657)
T 4fix_A          268 DCQQILFMDDDI-RLEPDSILRVLAMHRFAKA  298 (657)
T ss_dssp             CCSEEEEECSSE-EECTHHHHHHHHHHHHBSS
T ss_pred             CCCEEEEECCCC-ccChhHHHHHHHHHHhCCC
Confidence            468999999999 6789999999999876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1h7ea_	245	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	1e-49
d1vica_	255	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	1e-48
d1vh1a_	246	c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac	1e-47
d2dpwa1	231	c.68.1.19 (A:1-231) Uncharacterized protein TTHA01	7e-33
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	7e-15
d1qwja_	228	c.68.1.13 (A:) CMP acylneuraminate synthetase {Mou	2e-14
d1eyra_	225	c.68.1.13 (A:) CMP acylneuraminate synthetase {Nei	2e-13
d2oi6a2	248	c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate	2e-11
d1vpaa_	221	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	3e-08
d1vgwa_	226	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	5e-08
d1e5ka_	188	c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro	2e-07
d1i52a_	225	c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt	5e-07
d1w77a1	226	c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-	2e-06
d1w55a1	205	c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme,	9e-05
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	2e-04

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

 Score =  162 bits (411), Expect = 1e-49
 Identities = 84/246 (34%), Positives = 138/246 (56%), Gaps = 5/246 (2%)

Query: 48  SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
           S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD ++ +  Q
Sbjct: 1   SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQ 60

Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
            FG   IMT     +GT+R  E + K+  + DI +N+QGDEP+I P  ++ +++ ++  P
Sbjct: 61  AFGGKAIMTRNDHESGTDRLVEVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDP 118

Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
               +T   ++   +A +P+ VK VV+    A+YFSR         +   +  YL H+GI
Sbjct: 119 ALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSR---SPIPYPRNAEKARYLKHVGI 175

Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES 287
            +Y  + L+ Y  L  +  +  E LEQL+++  G  ++  +V     GVD P  +EK+ +
Sbjct: 176 YAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRA 235

Query: 288 FMRERN 293
            M +  
Sbjct: 236 LMAQEL 241

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

 Score =  160 bits (404), Expect = 1e-48
 Identities = 107/252 (42%), Positives = 147/252 (58%), Gaps = 11/252 (4%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
              IIPARFASSR  GKPL +I GKPMIQ  +E++   +    +++ATD+E +A+  + F
Sbjct: 2   FTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKAL-QSGASRVIIATDNENVADVAKSF 60

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           GA+V MTS +  +GTER  E ++KL    + I+VNIQGDEPLI P I+  V   L     
Sbjct: 61  GAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 120

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG--------KVNPQFP 220
            + S AV     E+ F+PN VK + D  GY +YFSR +IPY++          KV     
Sbjct: 121 NMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDA 180

Query: 221 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAP 279
           YL H+GI +Y + F+K Y    PT L+  E LEQL+VL NG ++ V       A GVD  
Sbjct: 181 YLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA 240

Query: 280 EDVEKIESFMRE 291
           ED+EK+ + +  
Sbjct: 241 EDLEKVRAILAA 252

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

 Score =  157 bits (398), Expect = 1e-47
 Identities = 100/246 (40%), Positives = 141/246 (57%), Gaps = 7/246 (2%)

Query: 50  VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
            V IIPAR+AS+R  GKPLV+I GKPMI    ER++  +  + ++VATD E +A   +  
Sbjct: 2   FVVIIPARYASTRLPGKPLVDINGKPMIVHVLERAR-ESGAERIIVATDHEDVARAVEAA 60

Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           G +V MT    ++GTER  E ++K       ++VN+QGDEP+I   II  V   L     
Sbjct: 61  GGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQV 120

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK----SGKVNPQFPYLLH 224
            + + AV     E+AF+PN VK V+D  GYA+YFSR  IP+++     G       +L H
Sbjct: 121 GMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRH 180

Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE 283
           LGI  Y + F++ Y    P+PL+  E LEQL+VL  G K+ V         GVD PED+E
Sbjct: 181 LGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLE 240

Query: 284 KIESFM 289
           ++ + M
Sbjct: 241 RVRAEM 246

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

 Score =  118 bits (297), Expect = 7e-33
 Identities = 38/250 (15%), Positives = 71/250 (28%), Gaps = 37/250 (14%)

Query: 49  RVVGIIPARFASSRFE-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
           R   I+ A    +  E      K LV   G+PM++   E          L  A       
Sbjct: 2   RPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEA---------LYAAGLSPVYV 52

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
                      +T        E   +AL+ +      V+   GD P +  E +  V+   
Sbjct: 53  GENPGLVPAPALTLPDRGGLLENLEQALEHV---EGRVLVATGDIPHLTEEAVRFVLDKA 109

Query: 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDN-----HGYAIYFSRGLIPYNKSGK---- 214
             A        +   +  +A  P   +           G  +      +           
Sbjct: 110 PEAALVY---PIVPKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARRV 166

Query: 215 VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAH 274
           V  +   L    +  +D   L        +  ++E   +++     G + + +   +   
Sbjct: 167 VALRKRPLALARLVGWD--VLLKLLLGRLSLAEVEARAQRI----LGVEARALVTPYPEV 220

Query: 275 G--VDAPEDV 282
           G  VD  ED+
Sbjct: 221 GVDVDREEDL 230

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 70.5 bits (171), Expect = 7e-15
 Identities = 39/248 (15%), Positives = 69/248 (27%), Gaps = 19/248 (7%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           II A    +R +    K L  + G  M++  +         +  V     +         
Sbjct: 5   IILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLA 63

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
           G    +T                 LE      + I GD PLI  E +  ++       + 
Sbjct: 64  GQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNV 123

Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
                       +  +P     +V N    +      I   K      +    ++ G   
Sbjct: 124 ATI------LTAETDNPFGYGRIVRNDNAEVLR----IVEQKDATDFEKQIKEINTGTYV 173

Query: 230 YDSNFLKIYPGL---HPTPLQLEEDLEQLKVLENGYKMKVIKVD--HEAHGVDAPEDVEK 284
           +D+  L         +    +           E G K+    +    E+ GV+    +  
Sbjct: 174 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALAT 233

Query: 285 IESFMRER 292
            ES MR R
Sbjct: 234 AESVMRRR 241

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (167), Expect = 2e-14
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 23/245 (9%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
            +  ++ AR  S     K +  + G P+I      +  A     + V+TD ++I    +Q
Sbjct: 3   HLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQ 62

Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
           FGA V   S      +    +A+ +    ++           ++               D
Sbjct: 63  FGAQVHRRSSETSKDSSTSLDAIVEFLNYHNE----------VDIVGNIQATSPCLHPTD 112

Query: 169 AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQ 228
                 +   +  D+      +                 P N +    P+         +
Sbjct: 113 LQKVAEMIREEGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYE 172

Query: 229 SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESF 288
           +    F K               L ++  L+ G           +  +D   D    E  
Sbjct: 173 NGSFYFAK-------------RHLIEMGYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQR 219

Query: 289 MRERN 293
           +    
Sbjct: 220 VLRFG 224

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 31/246 (12%)

Query: 49  RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
           + + +I AR  S     K L  + G  ++  T   +  +   D ++V+TD   IAE  + 
Sbjct: 4   QNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKN 63

Query: 109 FGADVIMTSESCRNGTERCNEA----LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164
           FG +V++      + T          L+ +      V  +Q   PL     I        
Sbjct: 64  FGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFD 123

Query: 165 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
                   +A                       +     +      ++ + N        
Sbjct: 124 EKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYI--- 180

Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVE 283
                 D+  L                             K+  + H ++  +D   D++
Sbjct: 181 -----NDTASLIANNCFF------------------IAPTKLYIMSHQDSIDIDTELDLQ 217

Query: 284 KIESFM 289
           + E+ +
Sbjct: 218 QAENIL 223

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 32/247 (12%), Positives = 75/247 (30%), Gaps = 20/247 (8%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           +I A    +R      K L  + GK M+Q   + +       H+ +              
Sbjct: 6   VILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALK 64

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
             ++    ++ + GT    +         + ++ + GD PLI  E +  +  A       
Sbjct: 65  DDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIG 124

Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
           + +            DP     +   +G            ++      Q   +    + +
Sbjct: 125 LLTV--------KLDDPTGYGRITRENGKVTGIVEHKDATDE----QRQIQEINTGILIA 172

Query: 230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVL--ENGYKMKVIKVDH--EAHGVDAPEDVEKI 285
             ++  +    L     Q E  +  +  L  + G ++  +      E  GV+    + ++
Sbjct: 173 NGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRL 232

Query: 286 ESFMRER 292
           E   +  
Sbjct: 233 ERVYQSE 239

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 28/247 (11%), Positives = 67/247 (27%), Gaps = 36/247 (14%)

Query: 51  VGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLD--HLVVATDDEKIAEC 105
           V I+ A     R      K  + I G+ + +        +  +D   +V   +  ++ E 
Sbjct: 5   VAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEK 64

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
                  + +            +      +     V+      P +  + +  V++    
Sbjct: 65  RVFHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRR--- 121

Query: 166 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
                           +           D            IP     ++     +   +
Sbjct: 122 --------------ARETGAATLALKNSDALVRVENDRIEYIPRKGVYRILTPQAFSYEI 167

Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
             +++++              +  +D E   V + G K+ +++ D     V   ED+E  
Sbjct: 168 LKKAHENGG------------EWADDTEP--VQKLGVKIALVEGDPLCFKVTFKEDLELA 213

Query: 286 ESFMRER 292
               RE 
Sbjct: 214 RIIAREW 220

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 36/250 (14%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLD--HLVVATDDEKIA 103
           + + +IPA     RF     K  V I  K +++      +    +D   +VV+ +D    
Sbjct: 3   KNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62

Query: 104 ECCQQFGADVIMTSESCRNGTERCNEAL----QKLEKKYDIVVNIQGDEPLIEPEIIDGV 159
           +    F    +  +          N         L  + D ++        +  E +  +
Sbjct: 63  KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARL 122

Query: 160 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF 219
           ++    A +        +       +  ++   VD  G     +  L             
Sbjct: 123 IEQAGNAAEGGILAVPVA-DTLKRAESGQISATVDRSGLWQAQTPQLFQAGL-------- 173

Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP 279
             L                            D     V + G +  +I+ D     +  P
Sbjct: 174 --LHRALAAENLGGI---------------TDEASA-VEKLGVRPLLIQGDARNLKLTQP 215

Query: 280 EDVEKIESFM 289
           +D   +   +
Sbjct: 216 QDAYIVRLLL 225

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 48  SRVVGIIPARFASSRFEG--KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
           + + G++ A   + R  G  K L+ + GKP+ Q   +      +   +      E     
Sbjct: 2   TTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQAS 61

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
             +   D +                    ++  +  +    D P I P++   +    + 
Sbjct: 62  GLKVIEDSL-----ADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQRKD 116

Query: 166 APDA 169
           AP  
Sbjct: 117 APVV 120

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 26/245 (10%), Positives = 63/245 (25%), Gaps = 26/245 (10%)

Query: 49  RVVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
            V  ++PA     R +    K  ++I  + +++ +         +  +V+A         
Sbjct: 3   DVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFA 62

Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
                    +T     +       A  K       V+      P +  + +  +      
Sbjct: 63  QLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL------ 116

Query: 166 APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
                   A++            V+  +             +  N          +   L
Sbjct: 117 -------LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPREL 169

Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 285
                     +   G   T      D     +   G+  ++++   +   V  PED+   
Sbjct: 170 LHDCLTRALNE---GATIT------DEASA-LEYCGFHPQLVEGRADNIKVTRPEDLALA 219

Query: 286 ESFMR 290
           E ++ 
Sbjct: 220 EFYLT 224

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 37/247 (14%), Positives = 77/247 (31%), Gaps = 30/247 (12%)

Query: 50  VVGIIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC 106
           V  I+ A     R +    K  + +LG+P+   ++        +  +VV  D        
Sbjct: 5   VSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFE 64

Query: 107 QQFGADVIMTSESCRNGTERCNEAL--QKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164
           +   +  +    +      + +     Q+++   ++V       PL+  E ++ V+K   
Sbjct: 65  EYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGS 124

Query: 165 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
           A   AV      +   E   D   VK +                     ++         
Sbjct: 125 AVGAAVLGVPAKATIKEVNSDSLVVKTL---------------DRKTLWEMQTPQVIKPE 169

Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEK 284
           L  + ++        GL  T      D   + V    + + V +  +    V  P+D+  
Sbjct: 170 LLKKGFELV---KSEGLEVT------DDVSI-VEYLKHPVYVSQGSYTNIKVTTPDDLLL 219

Query: 285 IESFMRE 291
            E  + E
Sbjct: 220 AERILSE 226

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 53  IIPARFASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
           I+ A   S+RF     K  + +   P+     +          +VV + +    +   + 
Sbjct: 5   IMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKN 64

Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
              +        +  +             + V+       L+   + D +++ L  A   
Sbjct: 65  YEFIEGGDTRAESLKKALELI------DSEFVMVSDVARVLVSKNLFDRLIENLDKADCI 118

Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
             +  V      D     R K  +                +++ +       +  +G + 
Sbjct: 119 TPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALDQNLEFTDDSTAIAAMGGKI 178

Query: 230 Y----DSNFLKI-YPGLHPTPLQLEEDLEQLKVL 258
           +    + N  K+ +           EDL++L + 
Sbjct: 179 WFVEGEENARKLTFK----------EDLKKLDLP 202

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 48/253 (18%), Positives = 72/253 (28%), Gaps = 32/253 (12%)

Query: 52  GIIPARFASSRFEG------KPLVNILGKPMIQRTWERSKLATTLDHLVVAT--DDEKIA 103
           GI+ A  + +R         K L+ I  KPMI        LA   D L+++T  D     
Sbjct: 6   GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYR 65

Query: 104 ECCQ---QFGADVIMTSESCRNGTERCNEALQKLEKKY--DIVVNIQGDEPLIEPEIIDG 158
           +      QFG       +    G     +A    +       V  + GD         + 
Sbjct: 66  DLLGDGSQFGVRFSYRVQEEPRGIA---DAFIVGKDFIGDSKVALVLGDNVFYGHRFSEI 122

Query: 159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV-DNHGYAIYFSRGLIPYNKSGKVNP 217
           + +A      AV              DP     V  D+ G  I          KS  V P
Sbjct: 123 LRRAASLEDGAVIFGYYVR-------DPRPFGVVEFDSEGRVISIEEK-PSRPKSNYVVP 174

Query: 218 QFPYLLHLGIQSYDSNFLKIYPG----LHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA 273
              Y     +            G           L     +L+V   G  M  +      
Sbjct: 175 GL-YFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMG--KLRVELMGRGMAWLDTGTHD 231

Query: 274 HGVDAPEDVEKIE 286
             ++A   +E I+
Sbjct: 232 GLLEASSFIETIQ 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.98
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.98
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	99.97
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.95
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.94
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.94
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.94
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	99.94
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	99.94
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	99.93
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.93
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.93
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	99.93
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	99.91
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.9
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.88
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.87
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.87
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	99.86
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.85
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	99.82
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.18
d2i5ea1	208	Hypothetical protein MM2497 {Methanosarcina mazei	97.86
d1jv1a_	501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	97.61
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	96.28
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	93.54
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	92.14
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	82.67

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=99.98  E-value=7.1e-31  Score=226.97  Aligned_cols=238  Identities=36%  Similarity=0.658  Sum_probs=189.9

Q ss_pred             ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHH
Q 022555           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN  128 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~  128 (295)
                      |+.+||||+|+|+|+++|+|++++|+|||+|+++++++++.+++|+|+++++++...+..++..++..+....++..++.
T Consensus         2 k~i~iIpAR~~SkRl~~Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T d1h7ea_           2 KAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLV   81 (245)
T ss_dssp             CEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESCHHHHHHHHHTTCEEEECCSCCSSHHHHHH
T ss_pred             CEEEEEcCCCCCcCCCCccccccCCccHHHHHHHHHHhCCCCCeEEEecccccchhhhhhcCceEEEecCccccccHHHH
Confidence            67899999999999999999999999999999999999989999999999999999999999998877666667777788


Q ss_pred             HHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCc-EEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555          129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA-VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (295)
Q Consensus       129 ~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~-~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i  207 (295)
                      .++..+  +.|.++.+.+|.|+++...++.+++.+...... ..+.. .........++..++......+...++...+.
T Consensus        82 ~~~~~~--~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~  158 (245)
T d1h7ea_          82 EVMHKV--EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC-HAISAAEAAEPSTVKVVVNTRQDALYFSRSPI  158 (245)
T ss_dssp             HHHHHS--CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE-EEECHHHHTCTTSCEEEECTTCBEEEEESSCS
T ss_pred             HHHHhc--CCCEEEEecchhhhcccccchhhhhcccccccccccccc-cccccccccCCcceeeccchhhhhhhhhhhhh
Confidence            888887  468999999999999999999999988754332 22222 12111222334456666666677777765543


Q ss_pred             CCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHH
Q 022555          208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIES  287 (295)
Q Consensus       208 ~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~  287 (295)
                      .+.+.   ........+.|+|.|++++|..+....++.+|..+.+++++++..|.++.++..+..++||||++||+.|+.
T Consensus       159 ~~~~~---~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~  235 (245)
T d1h7ea_         159 PYPRN---AEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRA  235 (245)
T ss_dssp             SCCTT---GGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHH
T ss_pred             hhhhc---ccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHH
Confidence            32221   111245778899999999999888777777777777888888889999999998888999999999999999


Q ss_pred             HHHHh
Q 022555          288 FMRER  292 (295)
Q Consensus       288 ll~~r  292 (295)
                      +|+++
T Consensus       236 il~~~  240 (245)
T d1h7ea_         236 LMAQE  240 (245)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99875

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=99.98  E-value=3.3e-31  Score=229.49  Aligned_cols=237  Identities=41%  Similarity=0.668  Sum_probs=183.3

Q ss_pred             eEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHH
Q 022555           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (295)
Q Consensus        50 i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~  129 (295)
                      ..+||||+|+|+|+++|+|.+++|+|||+|+++++++++ +++|+|+|+++++.+.+.++|..++...+....+.+++..
T Consensus         2 ~i~iIpAR~gSkrip~KnL~~i~GkpLI~~~i~~a~~s~-i~~iiVsTd~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~   80 (246)
T d1vh1a_           2 FVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAE   80 (246)
T ss_dssp             CEEEEECCCCCC--CCTTTCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECC-----CHHHHHH
T ss_pred             EEEEEecCCCCcCCCCchhhhcCCccHHHHHHHHHHHcC-CCcEEEEecCccccchhhcccccceeecccccccchHHHH
Confidence            469999999999999999999999999999999999985 8999999999999999999999987765555666667666


Q ss_pred             HHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCC-CCCCCCCCceEEEECCCCeEEEeecCC
Q 022555          130 ALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGL  206 (295)
Q Consensus       130 al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~-~~~~~~p~~~~v~~d~~g~v~~~~~~~  206 (295)
                      ++.... .+.+.++.+.+|.|++++++++.+++.+.... +.+..+  .+.. .....+++.++++.+.+|++.+|.+..
T Consensus        81 ~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vk~v~~~~~~~~~~~~~~  158 (246)
T d1vh1a_          81 VVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLA--VPIHNAEEAFNPNAVKVVLDAEGYALYFSRAT  158 (246)
T ss_dssp             HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEE--EECCCHHHHTCTTSCEEEECTTSBEEEEESSC
T ss_pred             HHHhhcccccceeeeeccccccchhhHHHHHhhhhccccccccccc--ccccchhcccCCCcceeeecccCccccccccc
Confidence            666543 34678999999999999999999999887653 333332  2222 122344566788888999999998876


Q ss_pred             CCCCCCC--CCCCC--CCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHHH
Q 022555          207 IPYNKSG--KVNPQ--FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPED  281 (295)
Q Consensus       207 i~~~r~~--~~~~~--~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeD  281 (295)
                      .+..+..  ...+.  ..++.+.|+|+|+++.|..+..+.++.+|..|.+++++++++|.+|.++..+ ...+||||++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~D  238 (246)
T d1vh1a_         159 IPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPED  238 (246)
T ss_dssp             SSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHH
T ss_pred             chhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHH
Confidence            6543221  11122  2356689999999999998877777777877888888889999999998876 57899999999


Q ss_pred             HHHHHHHH
Q 022555          282 VEKIESFM  289 (295)
Q Consensus       282 l~~ae~ll  289 (295)
                      |+.|+++|
T Consensus       239 l~~a~k~m  246 (246)
T d1vh1a_         239 LERVRAEM  246 (246)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999874

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=8.4e-30  Score=221.31  Aligned_cols=242  Identities=43%  Similarity=0.686  Sum_probs=185.5

Q ss_pred             eEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHHHHHH
Q 022555           50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE  129 (295)
Q Consensus        50 i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~~i~~  129 (295)
                      ..+||||+|+|+|+++|+|++++|+|||+|++++++++. +++|+|+|+++++.+.+.+++..+.........++++...
T Consensus         2 ~~~iIpAR~gSkRlp~Knl~~i~GkpLI~~~i~~a~~s~-i~~IiVsTd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (255)
T d1vica_           2 FTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-ASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAE   80 (255)
T ss_dssp             CEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTCEEEECCCSSCCHHHHHHH
T ss_pred             EEEEEecCCCCCCCCCchhhhhCCcCHHHHHHHHHHHCC-CCeEEEEcCCcccchhhhhhccccceeeeccCCcchhhHH
Confidence            469999999999999999999999999999999999985 8999999999999999999999887766666666666555


Q ss_pred             HHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCC
Q 022555          130 ALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLI  207 (295)
Q Consensus       130 al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i  207 (295)
                      +..... .+.+.++.+.+|.|++++.+++.+++.+.... +....+ +......+..+++.+....++++.+..+.+.+.
T Consensus        81 ~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  159 (255)
T d1vica_          81 VVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLA-VKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVI  159 (255)
T ss_dssp             HHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEE-EECCCHHHHTCTTSCEEEECTTSBEEEEESSCS
T ss_pred             HHHHhhccCCceEEEEecchhhhhhhhhhhhhhhccccccccccee-eeccchhhccCccceeeeeccCCcccccccccc
Confidence            554442 35678999999999999999999999887532 332222 222221122344556667788898888877654


Q ss_pred             CCCCCC------CCCCC--CCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCC
Q 022555          208 PYNKSG------KVNPQ--FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDA  278 (295)
Q Consensus       208 ~~~r~~------~~~~~--~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdt  278 (295)
                      ++.+..      ...++  .....+.|+|+|++..|..+....++.++..+.+++++++.+|.+|.++..+ ..++||||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt  239 (255)
T d1vica_         160 PYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDT  239 (255)
T ss_dssp             SCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCS
T ss_pred             cccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCC
Confidence            332211      11122  2356689999999999988877766667767777777888899999988876 57899999


Q ss_pred             HHHHHHHHHHHHHhc
Q 022555          279 PEDVEKIESFMRERN  293 (295)
Q Consensus       279 peDl~~ae~ll~~r~  293 (295)
                      ++||+.|++++++.|
T Consensus       240 ~eDl~~ae~ilkkn~  254 (255)
T d1vica_         240 AEDLEKVRAILAANG  254 (255)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999998864

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.95  E-value=5.5e-28  Score=207.13  Aligned_cols=214  Identities=18%  Similarity=0.208  Sum_probs=138.5

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchH---HHHHHHHcCCeEEeCCCCCCC
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~---i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      ++.+||||||+|+||+   ||+|++++|+|||+|+++.+.+++.+++|+|+++...   ++++...++..+...   ..|
T Consensus         4 ~i~~IIlAaG~GtRm~~~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~---~gg   80 (226)
T d1w77a1           4 SVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFA---IPG   80 (226)
T ss_dssp             CEEEEEECCC-------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTSCSSEEEEE---CCC
T ss_pred             ceEEEEeCCccCccCcCCCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhhhhhccccccccccccc---ccc
Confidence            3789999999999996   7999999999999999999998888899999998532   222223334444221   112


Q ss_pred             c--HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          123 G--TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       123 ~--~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      .  ..++++|+..+....+.++++++|+||++++++..+++...++. ..+.+.  +..       ++.+. ...++...
T Consensus        81 ~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~-~~i~~~--~~~-------d~~~~-~~~~~~~~  149 (226)
T d1w77a1          81 KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVG-AAVLGV--PAK-------ATIKE-VNSDSLVV  149 (226)
T ss_dssp             SSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHS-EEEEEE--ECC-------SCCCC-BCTTSCBC
T ss_pred             chhhhhhhhhHhhhccccccceecccccccccHHHhhhhhhhhhccC-ceeecc--ccc-------cceEE-EccCCcee
Confidence            2  35688899888656789999999999999999999999887653 333321  211       11111 11222221


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCH
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAP  279 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtp  279 (295)
                          +.  .+|+..+..+       +.|+|+.+.|.. +.......++.+|...  .+...|.+|.+++++..+++||||
T Consensus       150 ----~~--~~r~~~~~~~-------~p~~f~~~~l~~~~~~~~~~~~~~TD~~~--l~~~~g~~v~~v~g~~~n~KItt~  214 (226)
T d1w77a1         150 ----KT--LDRKTLWEMQ-------TPQVIKPELLKKGFELVKSEGLEVTDDVS--IVEYLKHPVYVSQGSYTNIKVTTP  214 (226)
T ss_dssp             ------------CCEEEE-------EEEEECHHHHHHHHHHHHHSCCCCCC-CC--TTGGGSSCCEEEECCTTCCCCCSH
T ss_pred             ----ec--ccchhhhHHH-------HHHhHhhHHHHHHHHHHHhcCCCcCcHHH--HHHHCCCceEEEECChhhcCcCCH
Confidence                11  1333333333       449999988875 3222222344555431  123369999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 022555          280 EDVEKIESFMRE  291 (295)
Q Consensus       280 eDl~~ae~ll~~  291 (295)
                      +||++||.+|++
T Consensus       215 eDl~~ae~lL~~  226 (226)
T d1w77a1         215 DDLLLAERILSE  226 (226)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCc
Confidence            999999999974

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=8.4e-27  Score=198.86  Aligned_cols=213  Identities=17%  Similarity=0.182  Sum_probs=146.1

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc--CCeEEeCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCR  121 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~--~~~v~~~~~~~~  121 (295)
                      .|++ |||||||+|+||+   ||+|++++|+|||+|+++++.+++.+++|+|+++.+.........  ...+.... ...
T Consensus         2 ~M~i-AIILAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~-~~~   79 (221)
T d1vpaa_           2 HMNV-AILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVE-GGD   79 (221)
T ss_dssp             CCEE-EEEEECCCCGGGCCSSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEE-CCS
T ss_pred             CCeE-EEEccCcCcccCCCCCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhHHHhhhcccccccccc-ccc
Confidence            4676 8999999999997   799999999999999999999887899999999876554433322  22222111 112


Q ss_pred             CcHHHHHHHHHHcc-ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE
Q 022555          122 NGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI  200 (295)
Q Consensus       122 g~~~~i~~al~~~~-~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~  200 (295)
                      +...+...++..+. ...+.++++++|+||++++++..+++.+.+....+.+   .+..       +.++. . +++...
T Consensus        80 ~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~~~~---~~~~-------d~~~~-~-~~~~~~  147 (221)
T d1vpaa_          80 TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAATLA---LKNS-------DALVR-V-ENDRIE  147 (221)
T ss_dssp             SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEEEEE---EECC-------SEEEE-E-ETTEEE
T ss_pred             cccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhccccccccc---cccc-------ceeEe-e-cCccce
Confidence            33345666776653 3568999999999999999999999998875333222   2221       23322 2 233322


Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHH
Q 022555          201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE  280 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpe  280 (295)
                      ..       +|+       ..+...+.+.|..+.|.....   ...+.+|...  .+...|.+|.+++++..+++|||||
T Consensus       148 ~~-------~~~-------~~~~~~~~~~~~~~~l~~~~~---~~~~~tD~~~--l~~~~g~~v~~i~g~~~n~kI~t~e  208 (221)
T d1vpaa_         148 YI-------PRK-------GVYRILTPQAFSYEILKKAHE---NGGEWADDTE--PVQKLGVKIALVEGDPLCFKVTFKE  208 (221)
T ss_dssp             EE-------CCT-------TEEEEEEEEEEEHHHHHHHHT---TCCCCSSSHH--HHHTTTCCCEEEECCGGGCCCCSTT
T ss_pred             ec-------chH-------HHHHhhhhhhhhHHHHHHHHH---hCCCCccHHH--HHHHcCCceEEEecChhhcCCCCHH
Confidence            11       221       234556668898887765432   2234455432  1334799999999888899999999


Q ss_pred             HHHHHHHHHHHh
Q 022555          281 DVEKIESFMRER  292 (295)
Q Consensus       281 Dl~~ae~ll~~r  292 (295)
                      ||+.|+.+++++
T Consensus       209 Dl~~Ae~llk~~  220 (221)
T d1vpaa_         209 DLELARIIAREW  220 (221)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999999986

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.2e-26  Score=196.19  Aligned_cols=218  Identities=10%  Similarity=0.138  Sum_probs=148.2

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCch--HHHHHHHHcCCeEEeCCCCCC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCR  121 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~--~i~~~~~~~~~~v~~~~~~~~  121 (295)
                      .|++.|||||||+||||+   ||+|++++|+|||+|+++++.+++.+++|+|+++.+  .+..........+.... ...
T Consensus         1 ~M~i~AIILAaG~gtRm~~~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~v~~~~-~~~   79 (225)
T d1i52a_           1 HLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVD-GGD   79 (225)
T ss_dssp             CCCEEEEEEECCCCGGGCCSSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGCTTEEEEE-CCS
T ss_pred             CCCEEEEEeCCCcceeCCCCCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhcccccccccc-CCc
Confidence            489999999999999997   699999999999999999999887799999999743  22221112222232211 122


Q ss_pred             CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEE
Q 022555          122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY  201 (295)
Q Consensus       122 g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~  201 (295)
                      ++..+++.++..+. +.+.++++++|.||++++++.++++.+..+....+..  .+..       +..+.....++....
T Consensus        80 ~~~~sv~~~~~~~~-~~~~vl~~~~~~p~i~~~~~~~~~~~~~~~~~~~v~~--~~~~-------d~~~~~~~~~~~~~~  149 (225)
T d1i52a_          80 ERADSVLAGLKAAG-DAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILA--APVR-------DTMKRAEPGKNAIAH  149 (225)
T ss_dssp             SHHHHHHHHHHTST-TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCEEEE--EECC-------SCEEEECTTSSSEEE
T ss_pred             chhHHHHhhhcccC-ccceeeeeccCCCCCCHHHHHHHHhhhhhcccccccc--ccee-------eccchhccccccccc
Confidence            44567888888875 5789999999999999999999998887654444333  2221       123333333333221


Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhc-ccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHH
Q 022555          202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPE  280 (295)
Q Consensus       202 ~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~-~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpe  280 (295)
                      ..      +|+       ......+.+.|..+.+... ......+++.+|...  .+...|.+|.+++++..+++|||||
T Consensus       150 ~~------~~~-------~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~tD~~~--l~~~~g~~v~~v~~~~~nikItt~e  214 (225)
T d1i52a_         150 TV------DRN-------GLWHALTPQFFPRELLHDCLTRALNEGATITDEAS--ALEYCGFHPQLVEGRADNIKVTRPE  214 (225)
T ss_dssp             EE------CCT-------TCEEEEEEEEEEHHHHHHHHHHHHHTTCCCCSHHH--HHHHTTCCCEEEECCTTCCCCCSHH
T ss_pred             cc------chH-------HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCcHHH--HHHHCCCceEEEecCccccCcCCHH
Confidence            11      221       1233346688888877643 222223445566442  1234799999999988899999999


Q ss_pred             HHHHHHHHHH
Q 022555          281 DVEKIESFMR  290 (295)
Q Consensus       281 Dl~~ae~ll~  290 (295)
                      ||+.||.+++
T Consensus       215 Dl~~Ae~~l~  224 (225)
T d1i52a_         215 DLALAEFYLT  224 (225)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999985

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.3e-25  Score=198.99  Aligned_cols=219  Identities=17%  Similarity=0.204  Sum_probs=156.8

Q ss_pred             eEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEeCC
Q 022555           50 VVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTS  117 (295)
Q Consensus        50 i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~~~  117 (295)
                      ..|||||||.||||.      ||+|+|++|+|||+|+++.+..+ ++++|+|+++.   +.+.++..   ++++++.+..
T Consensus         2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~-Gi~ei~ii~~~~~~~~i~~~~~~~~~~g~~I~y~~   80 (292)
T d1fxoa_           2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPQDTPRFQQLLGDGSNWGLDLQYAV   80 (292)
T ss_dssp             EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEEEE
T ss_pred             cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHC-CCCEEEEEeCcCCHHHHHHHhccccccCeEEEEcc
Confidence            469999999999995      79999999999999999999988 59999877752   44555553   4677774322


Q ss_pred             C-CCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCC-CcEEEEeeeeCCCCCCCCCCceEEE-EC
Q 022555          118 E-SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDAFDPNRVKCV-VD  194 (295)
Q Consensus       118 ~-~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~-d~~v~v~~~~~~~~~~~~p~~~~v~-~d  194 (295)
                      + ...|...++..|...+. +.+.++++.+|. +. ..++.++++.+.++. ++.+  .+.++     .+|.+++|+ .|
T Consensus        81 q~~~~Gta~ai~~a~~~i~-~~~~~lil~dD~-~~-~~dl~~ll~~h~~~~~~~~i--~~~~V-----~~p~~yGV~~~d  150 (292)
T d1fxoa_          81 QPSPDGLAQAFLIGESFIG-NDLSALVLGDNL-YY-GHDFHELLGSASQRQTGASV--FAYHV-----LDPERYGVVEFD  150 (292)
T ss_dssp             CSSCCCGGGHHHHTHHHHT-TSEEEEEETTEE-EE-CTTHHHHHHHHHTCCSSEEE--EEEEC-----SCGGGSEEEEEC
T ss_pred             CCCCCcHHHHHHhhhhhcC-CCceEEEEcccc-cc-CcCHHHHHHHHHhCCCCcEE--EEEEC-----CCHHHCeEEEEc
Confidence            2 33344567888888885 234456666665 44 457999999997653 3333  33454     356678775 68


Q ss_pred             CCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEec-
Q 022555          195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKVD-  270 (295)
Q Consensus       195 ~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~~-  270 (295)
                      ++|+++.|.|||.         ...++.+.+|+|+|++++++....+.++   ++|.+|.+.  .++..| ++.+.... 
T Consensus       151 ~~~ki~~~~EKP~---------~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~--~~l~~~-~~~~~~~~~  218 (292)
T d1fxoa_         151 QGGKAISLEEKPL---------EPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNR--AYLERG-QLSVEIMGR  218 (292)
T ss_dssp             TTSCEEEEEESCS---------SCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHH--HHHHTT-CEEEEECCT
T ss_pred             CCCCEeEEEECCC---------CCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHH--HHHHcC-CeEEEEeCC
Confidence            8999999999863         1124789999999999998766655544   567777643  334454 34554443 


Q ss_pred             -CCcCCCCCHHHHHHHHHHHHH
Q 022555          271 -HEAHGVDAPEDVEKIESFMRE  291 (295)
Q Consensus       271 -~~~idIdtpeDl~~ae~ll~~  291 (295)
                       ..|+|++|++||..|..++..
T Consensus       219 ~~~W~D~Gt~~~l~~a~~~v~~  240 (292)
T d1fxoa_         219 GYAWLDTGTHDSLLEAGQFIAT  240 (292)
T ss_dssp             TSEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCHHHHHHHHHHHHH
Confidence             359999999999999987753

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=99.94  E-value=1.4e-26  Score=195.49  Aligned_cols=195  Identities=18%  Similarity=0.237  Sum_probs=142.9

Q ss_pred             ceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHc--CCeEEeCCCCCCCc
Q 022555           49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GADVIMTSESCRNG  123 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~--~~~v~~~~~~~~g~  123 (295)
                      .+.+||||||+|+||+   ||+|++++|+|||+|+++++.+...++.|+|+++..+.   .+.+  .+.++..   ...-
T Consensus         1 ~is~IILAaG~g~Rmg~~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~~~~---~~~~~~~~~~v~G---g~~r   74 (205)
T d1w55a1           1 EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITY---MKKFTKNYEFIEG---GDTR   74 (205)
T ss_dssp             CEEEEEECCSCCTTTCSSSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESCHHH---HHTTCSSSEEEEC---CSSH
T ss_pred             CeEEEEeCCccCeeCCcCCCceeEEECCEEHHHHHHHHHHhhccccccccccccccc---ccccccccccccc---ccch
Confidence            3689999999999997   79999999999999999999988778999888875432   2222  3444321   1112


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS  203 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~  203 (295)
                      ..+++.|++.+  +.+.+++++||+||++++.++++++.+.+. ++++.+  .++.       ++.+  .. + ..    
T Consensus        75 ~~Sv~~gl~~~--~~~~VlIhd~~rP~i~~~~i~~li~~~~~~-~~~i~~--~~~~-------dti~--~~-~-~~----  134 (205)
T d1w55a1          75 AESLKKALELI--DSEFVMVSDVARVLVSKNLFDRLIENLDKA-DCITPA--LKVA-------DTTL--FD-N-EA----  134 (205)
T ss_dssp             HHHHHHHHTTC--CSSEEEEEETTCTTCCHHHHHHHHTTGGGC-SEEEEE--ECCC-------SCEE--ET-T-EE----
T ss_pred             hhhhhhhhhhh--hhcceeeeccCcccCcHHHHHHHHhhhhcc-cccccc--cccc-------cccc--cc-c-cc----
Confidence            35688899888  468999999999999999999999987764 554433  3332       2232  11 1 11    


Q ss_pred             cCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHH
Q 022555          204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVE  283 (295)
Q Consensus       204 ~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~  283 (295)
                           .+|+..+..|||       |+|+.+.|....+   ...+.+|...  .+...|.+|..++++..+++||||+||+
T Consensus       135 -----~~R~~l~~~qTP-------Q~f~~~~l~~a~~---~~~~~tDd~~--~~~~~g~~v~~i~g~~~N~KIT~~eDl~  197 (205)
T d1w55a1         135 -----LQREKIKLIQTP-------QISKTKLLKKALD---QNLEFTDDST--AIAAMGGKIWFVEGEENARKLTFKEDLK  197 (205)
T ss_dssp             -----ECGGGCCEECSC-------EEEEHHHHHHHTS---SCCCCSSHHH--HHHTTTCCEEEEECCGGGCCCCSGGGGG
T ss_pred             -----ccchheeeeecc-------hhhhhHHHHHHHH---cCCCCCcHHH--HHHHcCCCEEEEecCcccCCCCCHHHHH
Confidence                 267778889999       9999988875322   2345566532  1223689999999999999999999999


Q ss_pred             HHH
Q 022555          284 KIE  286 (295)
Q Consensus       284 ~ae  286 (295)
                      .||
T Consensus       198 ~~e  200 (205)
T d1w55a1         198 KLD  200 (205)
T ss_dssp             GSC
T ss_pred             Hhc
Confidence            875

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=99.94  E-value=9e-26  Score=193.11  Aligned_cols=214  Identities=16%  Similarity=0.198  Sum_probs=133.9

Q ss_pred             CceEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc-hHHHHHH-HHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECC-QQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~-~~i~~~~-~~~~~~v~~~~~~~~g  122 (295)
                      +|+.|||||||.|+||+   ||+|++++|+|||+|+++++++++.++.|+|+++. +.+.+.. ..+........ ....
T Consensus         2 ~K~iAIIlAaG~gtRm~~~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~~~~~~~~~~~~~~~~~~~-g~~~   80 (226)
T d1vgwa_           2 RKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKN-GGQT   80 (226)
T ss_dssp             CCEEEEEECC----------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHHCTTSEEECC-CCSS
T ss_pred             CceEEEEeCCCCcccCCcCCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhhhhhhhhcccccceeeccc-cccc
Confidence            56789999999999997   79999999999999999999998888999999874 2333333 33333232221 1112


Q ss_pred             cHHHHHHHHHHcc-----ccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCC
Q 022555          123 GTERCNEALQKLE-----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG  197 (295)
Q Consensus       123 ~~~~i~~al~~~~-----~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g  197 (295)
                      ...++..++..+.     .+.+.++++++|+||+++.++..+++.+.......+..  .+..       +...  ..++|
T Consensus        81 ~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~~--~~~~-------~~~~--~~~~~  149 (226)
T d1vgwa_          81 RAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGILA--VPVA-------DTLK--RAESG  149 (226)
T ss_dssp             HHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEEE--EECC-------SCEE--EESSS
T ss_pred             cchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceeec--cccc-------ccce--eccCC
Confidence            2334555555432     24689999999999999999999999887654433322  2221       1222  22455


Q ss_pred             eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEecCCcCCCC
Q 022555          198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVD  277 (295)
Q Consensus       198 ~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~~~~idId  277 (295)
                      .+....      +|+..+..++|       +.|+...|...... ....+.+|...  -+...|.+|.+++++..+++||
T Consensus       150 ~i~~~~------~r~~~~~~~~p-------~~f~~~~l~~~~~~-~~~~~~tD~~~--l~~~~g~~v~~v~g~~~nikIt  213 (226)
T d1vgwa_         150 QISATV------DRSGLWQAQTP-------QLFQAGLLHRALAA-ENLGGITDEAS--AVEKLGVRPLLIQGDARNLKLT  213 (226)
T ss_dssp             BEEEEE------CCTTEEEEEEE-------EEEEHHHHHHHHHC-----CCCSHHH--HHHTTTCCCEEEECCTTCCCCC
T ss_pred             eEEecc------chHHHHHHHhh-------hcccHHHHHHHHHH-hhcCCCCcHHH--HHHHcCCceEEEECCccccCcC
Confidence            554321      23222223334       88998887643221 12234455431  1223699999999998999999


Q ss_pred             CHHHHHHHHHHH
Q 022555          278 APEDVEKIESFM  289 (295)
Q Consensus       278 tpeDl~~ae~ll  289 (295)
                      ||+||+.|+.+|
T Consensus       214 t~eDl~~ae~ll  225 (226)
T d1vgwa_         214 QPQDAYIVRLLL  225 (226)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHh
Confidence            999999999886

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.93  E-value=5.8e-25  Score=186.60  Aligned_cols=213  Identities=18%  Similarity=0.219  Sum_probs=155.5

Q ss_pred             ceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCc----H
Q 022555           49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNG----T  124 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~----~  124 (295)
                      +..|||||+|+|+|+++|+|++++|+|||+|+++++++++.+++|+|+++++++.+.++.++..++.++....++    .
T Consensus         4 ~~iaiIpar~~S~R~p~K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~td~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T d1eyra_           4 QNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSI   83 (225)
T ss_dssp             EEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCHHHHSTTCCHH
T ss_pred             CEEEEEccCCCCcCCCCccccccCCeEHHHHHHHHHHHcCCCceEEEeeccchhhhhhhhhcceeeeeccccccccccch
Confidence            467899999999999999999999999999999999999889999999999999999999999887765332222    2


Q ss_pred             HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEee
Q 022555          125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS  203 (295)
Q Consensus       125 ~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~  203 (295)
                      ..+..+++.+....|.++++.+|.||+++++|+++++.+.+. .+.++++.  +..    .+|.... ...++|....+.
T Consensus        84 ~~~~~~~~~~~~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~--~~~----~~~~~~~-~~~~~~~~~~~~  156 (225)
T d1eyra_          84 SGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC--PME----HHPLKTL-LQINNGEYAPMR  156 (225)
T ss_dssp             HHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE--ECS----SCTTSCE-EECSSSCEEESS
T ss_pred             hhccccccccccccceEEEeeccccccccccccccceeeccccccccceee--ccc----ccccccc-cccccccccccc
Confidence            346677777655678999999999999999999999988753 35555543  221    2333332 234555554332


Q ss_pred             cCCCCCCCCCCCCCCCC--ceEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHH
Q 022555          204 RGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPE  280 (295)
Q Consensus       204 ~~~i~~~r~~~~~~~~p--~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpe  280 (295)
                      ...    .....+++.+  +..+.++|+|+.+.+......                  .|.++..++++ ...+||||++
T Consensus       157 ~~~----~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~~~------------------~~~~~~~~~i~~~~~~dIdt~e  214 (225)
T d1eyra_         157 HLS----DLEQPRQQLPQAFRPNGAIYINDTASLIANNCF------------------FIAPTKLYIMSHQDSIDIDTEL  214 (225)
T ss_dssp             CGG----GGTSCGGGSCCEEEEEEEEEEEEHHHHHHHTSS------------------CCSSCEEEECCTTTTCCCCSHH
T ss_pred             ccc----ccccccccCcceeeecceeEEeeHHHHHHcCCc------------------cCCCeEEEEcCccceECCCCHH
Confidence            221    1112233333  456789999999977543211                  23456667765 6889999999


Q ss_pred             HHHHHHHHHH
Q 022555          281 DVEKIESFMR  290 (295)
Q Consensus       281 Dl~~ae~ll~  290 (295)
                      ||..||++++
T Consensus       215 Dl~~ae~i~~  224 (225)
T d1eyra_         215 DLQQAENILN  224 (225)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999999985

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.93  E-value=1.8e-24  Score=185.62  Aligned_cols=229  Identities=14%  Similarity=0.086  Sum_probs=153.1

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHH-HHcCCeEEeCCCCCCCcHH
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECC-QQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~-~~~~~~v~~~~~~~~g~~~  125 (295)
                      ..|||||||.||||+   ||+|++++|+|||+|+++++.+. ++++++|++++....... ..........+ ...+...
T Consensus         2 ~~AIIlAaG~GtRl~~~~PK~L~~i~Gkpli~~~l~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~   79 (250)
T d1g97a2           2 NFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAI-QPEKTVTVVGHKAELVEEVLAGQTEFVTQS-EQLGTGH   79 (250)
T ss_dssp             EEEEEECCCCCGGGCCSSCGGGSEETTEEHHHHHHHHHGGG-CCSEEEEEECTTHHHHHHHTTTTSEEEECS-SCCCHHH
T ss_pred             cEEEEECCCCCCCCCCCCCceeeEECCeeHHHHHHHHHHHc-CCCeEEEecccccchhhhhccccccccccc-cccccch
Confidence            469999999999996   69999999999999999999988 599999999864322111 11223333322 2335555


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ++..++..+....+.++++.+|.|++++..++++++.+.+.... .+....+...    ......++.+.++.+..+.++
T Consensus        80 ~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~  154 (250)
T d1g97a2          80 AVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNV-ATILTAETDN----PFGYGRIVRNDNAEVLRIVEQ  154 (250)
T ss_dssp             HHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCS-EEEEEEECSC----CTTSCEEEECTTCCEEEEECG
T ss_pred             HHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccc-cccccceecc----cCCCceEEEeeceEEEEeecc
Confidence            66677776654456788999999999999999999988775333 3333334321    112234455666777766554


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhccc-CCCCC----CcccchhhhhhhhhCCceEEEEEecCCc--CCCCC
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTP----LQLEEDLEQLKVLENGYKMKVIKVDHEA--HGVDA  278 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~----~~~~d~~~~~~~~~~G~~v~~v~~~~~~--idIdt  278 (295)
                      +-. .    ..+......++|+|.|+...|..+.. .....    ...++.+  ..+...|.+|.++..+++|  +.|||
T Consensus       155 ~~~-~----~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~~V~~~~~~~~~~~~gInt  227 (250)
T d1g97a2         155 KDA-T----DFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVI--GIFRETGEKVGAYTLKDFDESLGVND  227 (250)
T ss_dssp             GGC-C----HHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHH--HHHHHTTCCEEEEECSSGGGGCCCSS
T ss_pred             ccc-c----ccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHH--HHHHHCCCeEEEEEcCCcceecCCCC
Confidence            311 0    01112467899999999988775432 22111    1112211  1234578999999988777  44899


Q ss_pred             HHHHHHHHHHHHHh
Q 022555          279 PEDVEKIESFMRER  292 (295)
Q Consensus       279 peDl~~ae~ll~~r  292 (295)
                      ++||+.||+++++|
T Consensus       228 ~~dL~~ae~~~~~~  241 (250)
T d1g97a2         228 RVALATAESVMRRR  241 (250)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999876

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-25  Score=198.92  Aligned_cols=219  Identities=18%  Similarity=0.224  Sum_probs=153.2

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCeEEe
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIM  115 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~v~~  115 (295)
                      |+  |||||||.||||.      ||+|+|++|+|||+|+++.+..+ ++++|+|+++.   +.++.+..   ++|+++.+
T Consensus         2 Mk--aiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~-gi~~i~iv~~~~~~~~~~~~~~~g~~~gi~I~y   78 (291)
T d1mc3a_           2 MK--GIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA-GIREILIITTPEDKGYFQRLLGDGSEFGIQLEY   78 (291)
T ss_dssp             CE--EEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTCEEEE
T ss_pred             cc--EEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHc-CCCEEEEEeCcccHHHHHHHhCchHhhCcEEEE
Confidence            55  9999999999994      79999999999999999999998 59999998874   23455542   46777744


Q ss_pred             CCCCCCCc-HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEE-E
Q 022555          116 TSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-V  193 (295)
Q Consensus       116 ~~~~~~g~-~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~-~  193 (295)
                      ..+..+.| ..++..+...+.  .+.++++.+|..|... .+..+++.+.++.+. .++...++     .+|..++++ .
T Consensus        79 ~~Q~~plGta~Ai~~a~~fi~--~~~~~lvlgddi~~~~-~~~~~l~~~~~~~~~-atI~~~~V-----~dP~~yGVve~  149 (291)
T d1mc3a_          79 AEQPSPDGLAQAFIIGETFLN--GEPSCLVLGDNIFFGQ-GFSPKLRHVAARTEG-ATVFGYQV-----MDPERFGVVEF  149 (291)
T ss_dssp             EECSSCCCSTHHHHHTHHHHT--TSCEEEEETTEEEECS-SCHHHHHHHTTCCSS-EEEEEEEC-----SCCSSSBBCEE
T ss_pred             EECCCCCchHHHHHHHHHHhC--CCCeEEEECCCcccCc-CHHHHHHHHHhCcCC-cEEEEEEC-----CCcccCCCcee
Confidence            33333444 467888888884  3445555666656553 577777777654322 23333454     356666654 6


Q ss_pred             CCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCCceEEEEEe-
Q 022555          194 DNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVIKV-  269 (295)
Q Consensus       194 d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G~~v~~v~~-  269 (295)
                      |++|++..|.|||.         +...+.+++|+|+|++++++....+.++   ++|.+|...  .++..|. ..+... 
T Consensus       150 d~~g~i~~i~EKP~---------~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~--~~l~~~~-~~~~~~~  217 (291)
T d1mc3a_         150 DDNFRAISLEEKPK---------QPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQ--MYLEAGN-LTVELLG  217 (291)
T ss_dssp             ETTEEEEECCBSCS---------SCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHH--HHHHTTC-EEEEECC
T ss_pred             ccCcceeEEEECCC---------CCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHH--HHHHcCC-ceEEEec
Confidence            88899999999863         1235799999999999999877766655   466666432  2344443 333333 


Q ss_pred             c-CCcCCCCCHHHHHHHHHHHH
Q 022555          270 D-HEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       270 ~-~~~idIdtpeDl~~ae~ll~  290 (295)
                      . ..|+|++|+++|..|..+++
T Consensus       218 ~g~~W~D~Gt~~~l~~a~~~v~  239 (291)
T d1mc3a_         218 RGFAWLDTGTHDSLIEASTFVQ  239 (291)
T ss_dssp             TTCEEEECCSHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCHHHHHHHHHHHH
Confidence            3 46999999999999997663

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.2e-25  Score=187.57  Aligned_cols=215  Identities=19%  Similarity=0.190  Sum_probs=150.5

Q ss_pred             CCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcH--
Q 022555           47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGT--  124 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~--  124 (295)
                      +|++.|||||+|.|+|+++|++++++|+|||+|++++++++..+++|+|+|+++.+.+.+.++++.++.++....++.  
T Consensus         1 ~~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks~~id~Iivstd~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (228)
T d1qwja_           1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQFGAQVHRRSSETSKDSST   80 (228)
T ss_dssp             CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTTCEEEECCGGGSSTTCC
T ss_pred             CCCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhcCCcceEEEecchhhhhhhhhhcCccccccccccccccch
Confidence            478999999999999999999999999999999999999988899999999999999999999998877654443433  


Q ss_pred             --HHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHh-CCCcEEEEeeeeCCCCCCCCCCceEEEEC-CCCeEE
Q 022555          125 --ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVD-NHGYAI  200 (295)
Q Consensus       125 --~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~-~~d~~v~v~~~~~~~~~~~~p~~~~v~~d-~~g~v~  200 (295)
                        ..+.+++.... ..+.++++.+|.||+++++|+++++.+.+ ..|.++++.  +...      ..+..... ..+...
T Consensus        81 ~~~~i~~~~~~~~-~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~--~~~~------~~~~~~~~~~~~~~~  151 (228)
T d1qwja_          81 SLDAIVEFLNYHN-EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVV--RRHQ------FRWSEIQKGVREVTE  151 (228)
T ss_dssp             HHHHHHHHHTTCT-TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEE--EECC------CEECCCCSSTTCCCC
T ss_pred             hhhhhhhcccccc-ccceeeeecccccccCchhhhhhhhhhhccCcccccccc--cccc------ccchhhhhhcccccc
Confidence              33455554443 46889999999999999999999999975 345555442  2210      11110011 111110


Q ss_pred             EeecCCCCCCCCCCCCCCCCc--eEEEeEEEecHHHHhhcccCCCCCCcccchhhhhhhhhCCceEEEEEec-CCcCCCC
Q 022555          201 YFSRGLIPYNKSGKVNPQFPY--LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVD  277 (295)
Q Consensus       201 ~~~~~~i~~~r~~~~~~~~p~--~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idId  277 (295)
                      .....    .....++|+.+.  ..+.++|+++.+++... .                +  .|.++..++++ ...+|||
T Consensus       152 ~~~~~----~~~~~~~qd~~~~y~~ng~~~~~k~~~~~~~-~----------------~--~~~k~~~~~i~~~~~idID  208 (228)
T d1qwja_         152 PLNLN----PAKRPRRQDWDGELYENGSFYFAKRHLIEMG-Y----------------L--QGGKMAYYEMRAEHSVDID  208 (228)
T ss_dssp             BSSSB----TTBCCCTTTSCCEEEEEEEEEEEEHHHHHTT-C----------------S--SCSSEEEEECCGGGCCCHH
T ss_pred             chhhh----hhhccccccccceeeeeeEEEEEeHHHHhhC-C----------------c--CCCCEEEEEcCccceECCC
Confidence            00000    111234566553  44677888887766421 0                1  34556677765 5789999


Q ss_pred             CHHHHHHHHHHHHHhc
Q 022555          278 APEDVEKIESFMRERN  293 (295)
Q Consensus       278 tpeDl~~ae~ll~~r~  293 (295)
                      |++||+.||+++++-+
T Consensus       209 t~eD~~~Ae~~l~k~~  224 (228)
T d1qwja_         209 VDIDWPIAEQRVLRFG  224 (228)
T ss_dssp             HHCSHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999998643

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.9e-23  Score=178.23  Aligned_cols=227  Identities=13%  Similarity=0.097  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCCCCC---CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCC-eEEeCCCCCCCcHH
Q 022555           50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA-DVIMTSESCRNGTE  125 (295)
Q Consensus        50 i~aiIlAaG~gsRl~---~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~-~v~~~~~~~~g~~~  125 (295)
                      +.+||||||.||||+   ||||++++|+|||+|+++.+.+. ++++|+|+++...........+. ..........|...
T Consensus         3 MkvIILAAG~GtRm~~~~PKpli~i~gkpiie~~i~~l~~~-~~~~iiiv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (248)
T d2oi6a2           3 MSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGH   81 (248)
T ss_dssp             EEEEEECCSCCGGGCCSSCGGGSEETTEEHHHHHHHHHHHH-TCSCEEEEESSCHHHHHHHCCCTTEEEEECSSCCCHHH
T ss_pred             ceEEEECCCCCCCCCCCCCeeeEEECChhHHHHHHHHHHHc-CCcEEEeccCcccceeeeecccccccccccccCcccHH
Confidence            359999999999995   79999999999999999999988 59999999985432221111222 22222223345556


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecC
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG  205 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~  205 (295)
                      ++..+...+. ....+++..+|.++.+...+..+.......   ..++.....     .+|..+.....++|........
T Consensus        82 ~~~~~~~~i~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  152 (248)
T d2oi6a2          82 AMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG---GIGLLTVKL-----DDPTGYGRITRENGKVTGIVEH  152 (248)
T ss_dssp             HHHHHGGGSC-TTSEEEEEETTCTTCCHHHHHHHHHHCCTT---SEEEEEEEC-----SCCTTSCEEEEETTEEEEEECG
T ss_pred             HHHhhhhhhc-cccceeeecCccccccchhHHHHHHHhhcc---ccceeEEEe-----cCCccccccccccCccceeeec
Confidence            7777777765 346789999999999888777776543322   222222222     2333333334445555544332


Q ss_pred             CCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcc-cCCCC----CCcccchhhhhhhhhCCceEEEEEecCCc--CCCCC
Q 022555          206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHPT----PLQLEEDLEQLKVLENGYKMKVIKVDHEA--HGVDA  278 (295)
Q Consensus       206 ~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~-~~~~~----~~~~~d~~~~~~~~~~G~~v~~v~~~~~~--idIdt  278 (295)
                      ...     ...+........|.|.|+.+.|..+. .+...    ++..+|.+  ..+...|.+|..+..+.+|  ++|||
T Consensus       153 ~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~--~~~~~~g~~v~~v~~~~~~e~~gI~t  225 (248)
T d2oi6a2         153 KDA-----TDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDII--ALAYQEGREIVAVHPQRLSEVEGVNN  225 (248)
T ss_dssp             GGC-----CTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHH--HHHHHTTCCEEEECCSSGGGGCCCSS
T ss_pred             cCC-----ChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHH--HHHHHCCCeEEEEEcCCHHHhCCCCC
Confidence            211     11122345678899999998876532 22221    22233432  2345689999999887655  57999


Q ss_pred             HHHHHHHHHHHHHhc
Q 022555          279 PEDVEKIESFMRERN  293 (295)
Q Consensus       279 peDl~~ae~ll~~r~  293 (295)
                      |+||..||+++++|+
T Consensus       226 ~eDL~~ae~i~~~~~  240 (248)
T d2oi6a2         226 RLQLSRLERVYQSEQ  240 (248)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998773

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=1.2e-22  Score=180.48  Aligned_cols=222  Identities=16%  Similarity=0.200  Sum_probs=148.3

Q ss_pred             CCCCceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc---hHHHHHHH---HcCCe
Q 022555           45 NFRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGAD  112 (295)
Q Consensus        45 ~~~~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~---~~i~~~~~---~~~~~  112 (295)
                      |..|+  |||||||.||||.      ||||+|++|+|||+|+++++... ++++++|+++.   +.++++..   +++++
T Consensus         1 ~~~Mk--avIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~-g~~~i~Iv~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T d1lvwa_           1 GAHMK--GIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLA-GIRDILIISTPRDLPLYRDLLGDGSQFGVR   77 (295)
T ss_dssp             CCSCE--EEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHT-TCCEEEEEECTTTHHHHHHHHTTSGGGTSE
T ss_pred             CCCcE--EEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHC-CCCeEEEEeCcccHHHHHHHhccchhcCCE
Confidence            45677  9999999999995      79999999999999999999987 59999999984   33444442   34666


Q ss_pred             E--EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceE
Q 022555          113 V--IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK  190 (295)
Q Consensus       113 v--~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~  190 (295)
                      +  +..++ ..|...++..|...+. +.+.++++.+| ++++. .+..++..+.+... .+++.+.++     .+|..++
T Consensus        78 i~~v~e~~-~~gta~Al~~a~~~l~-~~~~~li~~~d-~~~~~-~~~~~~~~~~~~~~-~~ti~~~~~-----~~~~~yG  147 (295)
T d1lvwa_          78 FSYRVQEE-PRGIADAFIVGKDFIG-DSKVALVLGDN-VFYGH-RFSEILRRAASLED-GAVIFGYYV-----RDPRPFG  147 (295)
T ss_dssp             EEEEECSS-CCCGGGHHHHTHHHHT-TSCEEEEETTC-CEECT-THHHHHHHHHTCCS-SEEEEEEEC-----SCCTTSE
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHcC-CCCEEEEeCCc-ceech-hHHHHHHHHHhCCC-CeEEEEEEc-----CCCcccc
Confidence            5  44432 2344467888888885 23455555555 57654 56677777765422 233333444     2444555


Q ss_pred             EE-ECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCC---CCcccchhhhhhhhhCC-ceEE
Q 022555          191 CV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENG-YKMK  265 (295)
Q Consensus       191 v~-~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~---~~~~~d~~~~~~~~~~G-~~v~  265 (295)
                      ++ .++++.|..|.|+|.         .....+++.|+|+|+.+++........+   +++.++.+.  .++..+ .++.
T Consensus       148 ~i~~~~~~~v~~~~EKp~---------~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~  216 (295)
T d1lvwa_         148 VVEFDSEGRVISIEEKPS---------RPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNE--EYLRMGKLRVE  216 (295)
T ss_dssp             EEEECTTSBEEEEEESCS---------SCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHH--HHHHTTCEEEE
T ss_pred             EEEECCCCcEEEEeeccc---------CcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHH--HHHHhCCCeEE
Confidence            44 577899999999852         1124688999999999988754443322   233333321  223333 3555


Q ss_pred             EEEecCCcCCCCCHHHHHHHHHHHH
Q 022555          266 VIKVDHEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       266 ~v~~~~~~idIdtpeDl~~ae~ll~  290 (295)
                      ....+..|+|+++++||..++..++
T Consensus       217 ~~~~~~~w~Digt~~~l~~~s~~i~  241 (295)
T d1lvwa_         217 LMGRGMAWLDTGTHDGLLEASSFIE  241 (295)
T ss_dssp             EECTTCEECCCSSHHHHHHHHHHHH
T ss_pred             EcCCCcEEeCCCChHHHHHHHHHHH
Confidence            5555678999999999999987654

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.88  E-value=8.2e-23  Score=173.60  Aligned_cols=211  Identities=15%  Similarity=0.157  Sum_probs=135.5

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECC--chHHHHHHHHcCCeEEeCCCC
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSES  119 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~--~~~i~~~~~~~~~~v~~~~~~  119 (295)
                      |++.|||||||.||||+      ||+|++++|+|||+|+++.+.+. ++++|+|+++  .+.++.+.+.+++++++.++.
T Consensus         2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~-g~~~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~   80 (229)
T d1jyka_           2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEK-GINDIIIIVGYLKEQFDYLKEKYGVRLVFNDKY   80 (229)
T ss_dssp             CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHT-TCCCEEEEECTTGGGGTHHHHHHCCEEEECTTT
T ss_pred             CceeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHh-CCcccccccccchhhhhhhhhhccccccccccc
Confidence            67779999999999996      79999999999999999999988 4999999997  466767777789998876655


Q ss_pred             CC-CcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCe
Q 022555          120 CR-NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY  198 (295)
Q Consensus       120 ~~-g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~  198 (295)
                      .. |...+++.|...+.   +.+++ .+|..+... .+.    .... ....+++.+.+       .+....+..++++.
T Consensus        81 ~~~Gt~~sl~~a~~~l~---~~~ii-~~dd~~~~~-~~~----~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~  143 (229)
T d1jyka_          81 ADYNNFYSLYLVKEELA---NSYVI-DADNYLFKN-MFR----NDLT-RSTYFSVYRED-------CTNEWFLVYGDDYK  143 (229)
T ss_dssp             TTSCTHHHHHTTGGGCT---TEEEE-ETTEEESSC-CCC----SCCC-SEEEEECEESS-------CSSCCEEEECTTCB
T ss_pred             cccccccccccchhhhc---ccccc-ccccccccc-chh----hhhh-ccccceeeeee-------ccccceeEEccCCc
Confidence            44 44467777776663   44544 556555432 111    1111 12233332211       11233445788888


Q ss_pred             EEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccC------CCCCCc-ccchhhhhhhhhCCceEEEEEec-
Q 022555          199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL------HPTPLQ-LEEDLEQLKVLENGYKMKVIKVD-  270 (295)
Q Consensus       199 v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~------~~~~~~-~~d~~~~~~~~~~G~~v~~v~~~-  270 (295)
                      +..+.+++.            +....+|+|.|++.....+...      .....+ ..+... ...+ ...++.+...+ 
T Consensus       144 i~~~~~~~~------------~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~  209 (229)
T d1jyka_         144 VQDIIVDSK------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMV-KDNI-KELDVYVEELEG  209 (229)
T ss_dssp             EEEEECCCS------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHH-HTTG-GGCCEEEEECCT
T ss_pred             eeeEEEecc------------cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHH-HHHH-HhCCceEEEecC
Confidence            887766531            3456679999988765432110      011111 111111 1112 23456776665 


Q ss_pred             CCcCCCCCHHHHHHHHHHHH
Q 022555          271 HEAHGVDAPEDVEKIESFMR  290 (295)
Q Consensus       271 ~~~idIdtpeDl~~ae~ll~  290 (295)
                      ..|+|||||+||..|++++|
T Consensus       210 ~~~~~I~t~edl~~a~~~~K  229 (229)
T d1jyka_         210 NSIYEIDSVQDYRKLEEILK  229 (229)
T ss_dssp             TSEEECCSHHHHHHHHHHHC
T ss_pred             CCEEecCCHHHHHHHHHhhC
Confidence            47999999999999999874

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=4.9e-22  Score=174.17  Aligned_cols=228  Identities=12%  Similarity=0.151  Sum_probs=141.9

Q ss_pred             CceEEEEEcCCCCCCC----C---Ccccccc-CCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHH--cCCeEEeCC
Q 022555           48 SRVVGIIPARFASSRF----E---GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ--FGADVIMTS  117 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl----~---~K~l~~i-~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~--~~~~v~~~~  117 (295)
                      ||+.|||||||.||||    .   ||||+++ +|+|||+|+++++......++++|+++.... ...++  .+.+++..+
T Consensus         1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~ii~E~   79 (268)
T d2cu2a2           1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQE-AVARPYADGIRLLLEP   79 (268)
T ss_dssp             CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGH-HHHGGGCSSSEEEEES
T ss_pred             CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHH-HHhhhhccccceeeee
Confidence            8899999999999999    2   7999997 6799999999999876567889988874321 22232  345665543


Q ss_pred             CCCCCcH-HHHHHHHHHc-cccCCEEEEEeCCcccCCHHHHHHHHHHHH--hCCCcEEEEeeeeCCCCCCCCCCceEEE-
Q 022555          118 ESCRNGT-ERCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQ--AAPDAVFSTAVTSLKPEDAFDPNRVKCV-  192 (295)
Q Consensus       118 ~~~~g~~-~~i~~al~~~-~~~~d~vlv~~~D~Pli~~~~i~~li~~~~--~~~d~~v~v~~~~~~~~~~~~p~~~~v~-  192 (295)
                      .  ..++ .++..++... ....+.+++++||.++..+..+...+....  ...+..+++.+.+..     .+..++++ 
T Consensus        80 ~--~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~yG~i~  152 (268)
T d2cu2a2          80 L--GRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTR-----PETEYGYIR  152 (268)
T ss_dssp             S--CCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSS-----CCSSSCEEE
T ss_pred             e--cCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccc-----cccccceEE
Confidence            2  2333 3455454333 234688999999999988887777666543  133455555444332     22333332 


Q ss_pred             ECCCC----eEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhh-cccCCCCCC----------cccchhh----
Q 022555          193 VDNHG----YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHPTPL----------QLEEDLE----  253 (295)
Q Consensus       193 ~d~~g----~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~-~~~~~~~~~----------~~~d~~~----  253 (295)
                      .++++    ++..|.|+|.. ... .......+++|+|+|+|++++|.. +.+..++.+          ...+.+.    
T Consensus       153 ~~~~~~~~~~v~~f~EKp~~-~~~-~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~  230 (268)
T d2cu2a2         153 LGPREGAWYRGEGFVEKPSY-AEA-LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPK  230 (268)
T ss_dssp             EEEEETTEEEEEEEECCCCH-HHH-HHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCC
T ss_pred             eccccccchhhheeecccch-hhh-hhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCcc
Confidence            33322    57788888631 100 000112368999999999998743 222111100          0001100    


Q ss_pred             ---hhhhhhCCceEEEEEecCCcCCCCCHHHHHHH
Q 022555          254 ---QLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI  285 (295)
Q Consensus       254 ---~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~a  285 (295)
                         +..+++.-.++.+++.+..|.||++.+.+...
T Consensus       231 iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~  265 (268)
T d2cu2a2         231 ISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERV  265 (268)
T ss_dssp             CCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHH
T ss_pred             ccchhhhhcccCCceEEecCCCcCCCcCHHHHHHH
Confidence               11244555679999999999999999998754

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.87  E-value=1.2e-21  Score=173.99  Aligned_cols=231  Identities=14%  Similarity=0.168  Sum_probs=143.3

Q ss_pred             ceEEEEEcCCCCCCCC------CccccccCCc-chHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHH-Hc---------
Q 022555           49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ-QF---------  109 (295)
Q Consensus        49 ~i~aiIlAaG~gsRl~------~K~l~~i~gk-pLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~-~~---------  109 (295)
                      ++.|||||||.||||.      ||+|+|++|+ |||+|+++.+.+. ++++|+|+++.  +.+.++.. .+         
T Consensus        11 ~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~   89 (307)
T d1yp2a2          11 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN   89 (307)
T ss_dssp             HEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHT-TCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred             ceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHc-CCCEEEEEeccccccchhhhhcccccccccccc
Confidence            3789999999999995      7999999885 9999999999998 59999999983  44544432 11         


Q ss_pred             -CCeEEeCCCC-------CCCcHHHHHHHHHHccc-cCCEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEeeeeCC
Q 022555          110 -GADVIMTSES-------CRNGTERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK  179 (295)
Q Consensus       110 -~~~v~~~~~~-------~~g~~~~i~~al~~~~~-~~d~vlv~~~D~Pli~~~~i~~li~~~~~~-~d~~v~v~~~~~~  179 (295)
                       ++..++..+.       ..|...++..++..+.. ..+.++++++|..+ . .++..+++.++.. .++.+...  .+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~-~-~d~~~~~~~~~~~~~~~~~~~~--~~~  165 (307)
T d1yp2a2          90 EGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLY-R-MDYEKFIQAHRETDADITVAAL--PMD  165 (307)
T ss_dssp             CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEEC-C-CCHHHHHHHHHHTTCSEEEEEE--EEC
T ss_pred             cccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCccee-c-cchhhhhhhhhhccccceEEEE--ecc
Confidence             2223222111       12334567777777652 34689999999943 3 3567888887653 33333332  222


Q ss_pred             CCCCCCCCceE-EEECCCCeEEEeecCCCCCC-----CCC-------CCCCCCCceEEEeEEEecHHHHhhccc-CCCCC
Q 022555          180 PEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYN-----KSG-------KVNPQFPYLLHLGIQSYDSNFLKIYPG-LHPTP  245 (295)
Q Consensus       180 ~~~~~~p~~~~-v~~d~~g~v~~~~~~~i~~~-----r~~-------~~~~~~p~~~~~Giyif~~~~l~~~~~-~~~~~  245 (295)
                      .++.   ..++ +.+|++|++..|.+++....     .+.       ......+...+.|+|+|++++|....+ ..+..
T Consensus       166 ~~~~---~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~  242 (307)
T d1yp2a2         166 EKRA---TAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGA  242 (307)
T ss_dssp             HHHH---TTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTC
T ss_pred             cccc---cccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccc
Confidence            1111   1233 34688999999988752100     000       000112457889999999999875432 22222


Q ss_pred             Ccc-cchhhhhhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHH
Q 022555          246 LQL-EEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFM  289 (295)
Q Consensus       246 ~~~-~d~~~~~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll  289 (295)
                      .++ .|.+  ..++..|.+|.+++.+++|.|||||+||..|+.-+
T Consensus       243 ~~~~~d~i--~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~l  285 (307)
T d1yp2a2         243 NDFGSEVI--PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGI  285 (307)
T ss_dssp             CCTTTTHH--HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGG
T ss_pred             cchHHHHH--HHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHH
Confidence            222 2222  23556889999999999999999999999998433

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.5e-23  Score=178.07  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=90.1

Q ss_pred             CceEEEEEcCCCCCCC---C--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCC
Q 022555           48 SRVVGIIPARFASSRF---E--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRN  122 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl---~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g  122 (295)
                      |+..|||||||+|+||   +  +|+|++++|+|||+|+++++.+++ +++|+|+++++...      .......  ...+
T Consensus         1 M~~~avIlA~G~~~r~~r~g~~~K~L~~i~Gkpli~~~~~~l~~~~-~~~vvv~~~~~~~~------~~~~~~~--~~~~   71 (231)
T d2dpwa1           1 MRPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAG-LSPVYVGENPGLVP------APALTLP--DRGG   71 (231)
T ss_dssp             CCCEEEEECCCBCSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTT-CEEEEESCCSSCSS------CCSEEEC--CCSS
T ss_pred             CCceEEEECCCCCCCCCCCCCCCceeeEECCeeHHHHHHHHHHhcC-CCeEEeeeeccccc------eeeeecc--cchH
Confidence            7899999999999766   3  599999999999999999999984 88898888764321      1222222  3446


Q ss_pred             cHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEe
Q 022555          123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  174 (295)
Q Consensus       123 ~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~  174 (295)
                      ...++..|++.+   .+.+++++||+||++++.++.+++.+.+ .+.++++.
T Consensus        72 ~~~~v~~al~~~---~~~~lv~~~D~P~i~~~~i~~l~~~~~~-~~~~~~~~  119 (231)
T d2dpwa1          72 LLENLEQALEHV---EGRVLVATGDIPHLTEEAVRFVLDKAPE-AALVYPIV  119 (231)
T ss_dssp             HHHHHHHHHHTC---CSEEEEEETTCTTCCHHHHHHHHHHCCS-CSEEEEEE
T ss_pred             HHHHHHHHHHhh---cCceEEeeCCCccCCHHHHHHHHHHhhh-cCceEEEE
Confidence            778899999987   3689999999999999999999987754 35555553

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=1.3e-20  Score=162.09  Aligned_cols=219  Identities=14%  Similarity=0.164  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCCCCCCC------CccccccCCcchHHHHHHHHhhCCCCCeEEEECCc--hHHHHHHHH-c--CC-----
Q 022555           48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--GA-----  111 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~------~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~--~~i~~~~~~-~--~~-----  111 (295)
                      |...|||||||.||||+      ||+|+|++|+|||+|+++.+.++ ++++|+|++++  +.++++... +  ..     
T Consensus         1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~-gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~   79 (259)
T d1tzfa_           1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH   79 (259)
T ss_dssp             CCCEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHT-TCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred             CCceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHc-CCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence            45679999999999996      79999999999999999999998 59999999984  555554421 0  00     


Q ss_pred             ----------------eE-EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEe
Q 022555          112 ----------------DV-IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  174 (295)
Q Consensus       112 ----------------~v-~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~v~  174 (295)
                                      .+ +.......+....+..+..... +.+.++++.+|.. .+ .....+++.+..... ..+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-~~-~~~~~~~~~~~~~~~-~~~~~  155 (259)
T d1tzfa_          80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-DDEAFLFTYGDGV-AD-LDIKATIDFHKAHGK-KATLT  155 (259)
T ss_dssp             GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-TSSCEEEEETTEE-EC-CCHHHHHHHHHHHCC-SEEEE
T ss_pred             hccccchhhhccccccceeEEeccccccccchhhhhhhhcc-CCCceEEeccccc-cc-cchhhhhhhhccccc-ceeec
Confidence                            01 1111111122233344444332 3467899999983 32 345566665554322 22222


Q ss_pred             eeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHhhcccCCCCCCcccchhhh
Q 022555          175 VTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQ  254 (295)
Q Consensus       175 ~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~~~~~~~~~~~~~~d~~~~  254 (295)
                      ...       ++..........+.+..+.+...          ......++|+|+|+++++........ .++ .+.+  
T Consensus       156 ~~~-------~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~G~y~~~~~~~~~i~~~~~-~~~-~~~l--  214 (259)
T d1tzfa_         156 ATF-------PPGRFGALDIQAGQVRSFQEKPK----------GDGAMINGGFFVLNPSVIDLIDNDAT-TWE-QEPL--  214 (259)
T ss_dssp             EEC-------CCCCSEEEEEETTEEEEEEESCS----------CCSCCEECCCEEECGGGGGGCCSTTC-CTT-THHH--
T ss_pred             ccc-------ccccCCceecccceEEeeeeccc----------cceeeecceeccccchhhhhcccCcC-ccH-HHHH--
Confidence            221       11223333333455554433321          12456889999999998765543211 111 1222  


Q ss_pred             hhhhhCCceEEEEEecCCcCCCCCHHHHHHHHHHHHHhc
Q 022555          255 LKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN  293 (295)
Q Consensus       255 ~~~~~~G~~v~~v~~~~~~idIdtpeDl~~ae~ll~~r~  293 (295)
                      ..++..| ++.+++.+++|.||||++|+..+++++++.+
T Consensus       215 ~~l~~~~-~v~~~~~~g~W~didt~~d~~~~~~~~~~~~  252 (259)
T d1tzfa_         215 MTLAQQG-ELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK  252 (259)
T ss_dssp             HHHHHTT-CEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHhcC-CeEEEEeCCEEEECCCHHHHHHHHHHHHcCC
Confidence            2234455 7888888889999999999999999998754

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.1e-20  Score=153.18  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=86.6

Q ss_pred             CCceEEEEEcCCCCCCCC--CccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCC-CCCCCc
Q 022555           47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNG  123 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~--~K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~-~~~~g~  123 (295)
                      |.++.+||||||+|||||  +|+|++++|+|||+|+++.+++.  +++|+|+++.+.  +.....+..+.... +...++
T Consensus         1 M~~i~~iILAgG~ssRmG~~~K~ll~~~g~~ll~~~l~~l~~~--~~~ivv~~~~~~--~~~~~~~~~v~~d~~~~~~~~   76 (188)
T d1e5ka_           1 MTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQ--LSHVVVNANRHQ--EIYQASGLKVIEDSLADYPGP   76 (188)
T ss_dssp             CCSEEEEEECCCCCSSSCSSCGGGSEETTEEHHHHHHHHHHHH--CSCEEEECSSSH--HHHHTTSCCEECCCTTCCCSH
T ss_pred             CCceeEEEEcCCCCcCCCCCCcccCEECCEehhHHHHhhhccc--ccccccccCccH--HhhhhcCCCccccccccccch
Confidence            567899999999999997  59999999999999999999864  678888887542  12234566654432 223345


Q ss_pred             HHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHH
Q 022555          124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ  164 (295)
Q Consensus       124 ~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~  164 (295)
                      ..++..++...  ..+.+++++||+|+++++.++.+++...
T Consensus        77 ~~g~~~~~~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~  115 (188)
T d1e5ka_          77 LAGMLSVMQQE--AGEWFLFCPCDTPYIPPDLAARLNHQRK  115 (188)
T ss_dssp             HHHHHHHHHHC--CSSEEEEEETTCTTCCTTHHHHHHHTCT
T ss_pred             hHHHHHHHHhc--ccceEEEeccCCCCCCHHHHHHHHHhcc
Confidence            56677777766  4689999999999999999999887643

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.18  E-value=1.5e-05  Score=70.99  Aligned_cols=227  Identities=11%  Similarity=0.066  Sum_probs=122.0

Q ss_pred             CCceEEEEEcCCCCCCCC---CccccccC-CcchHHHHHHHHhh-----CCCCCeEEEECC---chHHHHHHHHc---CC
Q 022555           47 RSRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKL-----ATTLDHLVVATD---DEKIAECCQQF---GA  111 (295)
Q Consensus        47 ~~~i~aiIlAaG~gsRl~---~K~l~~i~-gkpLl~~~l~~l~~-----~~~i~~IvVv~~---~~~i~~~~~~~---~~  111 (295)
                      ..++.+|+||||.|||||   ||.+++++ |+++++..++++..     ...+ .++|.|+   ++.+.++++++   +.
T Consensus        72 l~kvavv~LaGG~GTRLG~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~i-P~~iMtS~~T~~~t~~~l~~~~~fg~  150 (378)
T d2icya2          72 LDKLVVLKLNGGLGTTMGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKV-PLVLMNSFNTHDDTHKIVEKYTNSNV  150 (378)
T ss_dssp             HTTEEEEEEECCBSGGGTCCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCC-CEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred             hCCEEEEEecCCcccccCCCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCCCChHHHHHHHHHhccCCC
Confidence            457999999999999997   89999995 89999999999873     2224 4666665   46677777654   33


Q ss_pred             eE--EeC-------------------CC---CCCCcHHHHHHHHHH------cc-ccCCEEEEEeCCcccC--CHHHHHH
Q 022555          112 DV--IMT-------------------SE---SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI--EPEIIDG  158 (295)
Q Consensus       112 ~v--~~~-------------------~~---~~~g~~~~i~~al~~------~~-~~~d~vlv~~~D~Pli--~~~~i~~  158 (295)
                      .+  +.+                   +.   ..+.|...++.+|..      +. ..-+++++...|++..  ++..+..
T Consensus       151 ~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~  230 (378)
T d2icya2         151 DIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKH  230 (378)
T ss_dssp             CEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHH
T ss_pred             ceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHH
Confidence            32  111                   00   113444455555432      21 2468999999999753  2333333


Q ss_pred             HHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEE--EeecCCCCCCCCCCCCCCCCceEEEeEEEecHHHHh
Q 022555          159 VVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI--YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK  236 (295)
Q Consensus       159 li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~--~~~~~~i~~~r~~~~~~~~p~~~~~Giyif~~~~l~  236 (295)
                      +++   .+.+..+-  +++.+..+    ..++++...+|+..  .+.+-+.. ..+.......-..+|++..+|+..++.
T Consensus       231 ~~~---~~~~~~~k--vv~Kt~~d----ek~G~l~~~dg~~~vvEyse~p~e-~~~~~~~~~~~~~~N~nn~~~~l~~l~  300 (378)
T d2icya2         231 LIQ---NKNEYCME--VTPKTLAD----VKGGTLISYEGKVQLLEIAQVPDE-HVNEFKSIEKFKIFNTNNLWVNLKAIK  300 (378)
T ss_dssp             HHH---HTCSEEEE--EEECCTTC----CSSCEEEEETTEEEEECGGGSCGG-GHHHHHSSSSCCEEEEEEEEEEHHHHH
T ss_pred             HHh---cCCcceeE--EEecCCCC----CceeEEEEECCceeeeehhcCChh-HHhhhcCCcCcceeeeeeeeeeHHHHH
Confidence            222   23344333  33322111    12333333456543  33332210 110000011123579999999999987


Q ss_pred             hcccCCCCC---------------CcccchhhhhhhhhCCceEEEEEec-CCcCCCCCHHHHHHHH
Q 022555          237 IYPGLHPTP---------------LQLEEDLEQLKVLENGYKMKVIKVD-HEAHGVDAPEDVEKIE  286 (295)
Q Consensus       237 ~~~~~~~~~---------------~~~~d~~~~~~~~~~G~~v~~v~~~-~~~idIdtpeDl~~ae  286 (295)
                      +..+.....               ++++..+.  .++..-.+..+++.+ ++..-|.++.||..+.
T Consensus       301 ~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~--d~~~~~~~~~~~eV~R~rF~PvKn~sDll~~~  364 (378)
T d2icya2         301 KLVEADALKMEIIPNPKEVDGVKVLQLETAAG--AAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQ  364 (378)
T ss_dssp             HHHHTTCCCCCCBCCEEEETTEEEECCBCCGG--GGGGGSTTCEEEECCGGGCCBCCSHHHHHHHH
T ss_pred             HHHhhccCCCceEecCcCCCCCCeeehhhHHH--HHHHhCCCcEEEEecccccCCCCChHHHHHHh
Confidence            532211000               00111111  112211234555544 5799999999997654

>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MM2497-like
domain: Hypothetical protein MM2497
species: Methanosarcina mazei [TaxId: 2209]

Probab=97.86  E-value=1.6e-05  Score=65.11  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             EEEEcC--CCCCCCCC----ccccccCCcchHHHHHHHHhhCCCCCeEEEECCchHHHHHHHHcCCeEEeCCCCCCCcHH
Q 022555           52 GIIPAR--FASSRFEG----KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE  125 (295)
Q Consensus        52 aiIlAa--G~gsRl~~----K~l~~i~gkpLl~~~l~~l~~~~~i~~IvVv~~~~~i~~~~~~~~~~v~~~~~~~~g~~~  125 (295)
                      +|||-.  ..-|||.+    +.-..+. +-|+.++++.+.+.+ ++.++++++.++.....  .+..+...   ..+-..
T Consensus         3 ~iiPiK~~~aKTRL~~~L~~~~r~~L~-~~ml~~tl~~l~~~~-~~~v~~vs~~~~~~~~~--~~~~~~~~---~~~L~~   75 (208)
T d2i5ea1           3 AVIPYKKAGAKSRLSPVLSLQEREEFV-ELMLNQVISSLKGAG-IEQVDILSPSVYGLEEM--TEARVLLD---EKDLNE   75 (208)
T ss_dssp             EEEECCCTTTTGGGTTTSCHHHHHHHH-HHHHHHHHHHHHHTT-CSEEEEEESSCTTCSSC--CSSEEEEC---CSCHHH
T ss_pred             EEEecCCCCCccCcCcccCHHHHHHHH-HHHHHHHHHHHHhCC-CcEEEEEcCcHHHHHHh--hcCCcccC---CCCHHH
Confidence            788863  23467742    2222222 469999999999874 88888888754432211  22333332   123334


Q ss_pred             HHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHH
Q 022555          126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK  161 (295)
Q Consensus       126 ~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~  161 (295)
                      ++..+++.   ..+.++++.+|.|.+++++|+.+++
T Consensus        76 al~~a~~~---~~~~vliig~DlP~L~~~~l~~a~~  108 (208)
T d2i5ea1          76 ALNRYLKE---AEEPVLIVMADLPLLSPEHIKEISS  108 (208)
T ss_dssp             HHHHHHHH---CCSCEEEECSCCTTCCHHHHHHHTT
T ss_pred             HHHHHHhc---CCCCEEEecCCcCcCCHHHHHHHHh
Confidence            66677654   3678999999999999999988654

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=97.61  E-value=0.00074  Score=61.90  Aligned_cols=181  Identities=16%  Similarity=0.130  Sum_probs=99.1

Q ss_pred             CceEEEEEcCCCCCCCC---Ccccccc---CCcchHHHHHHHHhhC----------CCCCeEEEECC---chHHHHHHHH
Q 022555           48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLA----------TTLDHLVVATD---DEKIAECCQQ  108 (295)
Q Consensus        48 ~~i~aiIlAaG~gsRl~---~K~l~~i---~gkpLl~~~l~~l~~~----------~~i~~IvVv~~---~~~i~~~~~~  108 (295)
                      .++.+|+||||.|||||   ||-+.++   .|+++++..+++++..          +..-.++|.|+   ++.+.+++++
T Consensus       101 gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~  180 (501)
T d1jv1a_         101 NKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK  180 (501)
T ss_dssp             TCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred             CCEEEEEECCCccccCCCCCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHh
Confidence            47889999999999998   8999887   6899999988887642          11124666665   4667777764


Q ss_pred             c---CCe---E--EeC-------CC------------CCCCcHHHHHHHHHHc------c-ccCCEEEEEeCCcccC---
Q 022555          109 F---GAD---V--IMT-------SE------------SCRNGTERCNEALQKL------E-KKYDIVVNIQGDEPLI---  151 (295)
Q Consensus       109 ~---~~~---v--~~~-------~~------------~~~g~~~~i~~al~~~------~-~~~d~vlv~~~D~Pli---  151 (295)
                      +   |..   +  +.+       .+            ..+.|...++.+|..-      . ..-.++.+...|.++.   
T Consensus       181 ~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~~  260 (501)
T d1jv1a_         181 HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVA  260 (501)
T ss_dssp             TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTT
T ss_pred             ccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcccccc
Confidence            3   321   1  111       00            1123444455555432      1 2357999999999874   


Q ss_pred             CHHHHHHHHHHHHhCCCcEEEEeeeeCCCCCCCCCCceEEEECCCCeEEEeecCCCCC-CCCC-CCCCCCC-ceEEEeEE
Q 022555          152 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY-NKSG-KVNPQFP-YLLHLGIQ  228 (295)
Q Consensus       152 ~~~~i~~li~~~~~~~d~~v~v~~~~~~~~~~~~p~~~~v~~d~~g~v~~~~~~~i~~-~r~~-~~~~~~p-~~~~~Giy  228 (295)
                      +|..+..++.   .+.+  ++.-+++.+..  .  ..++++...+|+..-.....++. .++. ....+.. ...|++..
T Consensus       261 Dp~~lG~~~~---~~~~--~~~kvv~k~~~--~--e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~  331 (501)
T d1jv1a_         261 DPRFIGFCIQ---KGAD--CGAKVVEKTNP--T--EPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH  331 (501)
T ss_dssp             CHHHHHHHHH---TTCS--EEEEEEECCST--T--CSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred             CHHHHHHHHh---cccc--eeEEEEEcCCC--C--cccceEEEECCeEEEEEeccCCHHHHhhccCCCcccccccceehe
Confidence            4444443322   2333  33333332210  1  12344444466654222111110 0110 0011111 25788899


Q ss_pred             EecHHHHhh
Q 022555          229 SYDSNFLKI  237 (295)
Q Consensus       229 if~~~~l~~  237 (295)
                      +|+-++|..
T Consensus       332 ~fsl~fl~~  340 (501)
T d1jv1a_         332 FFTVPFLRD  340 (501)
T ss_dssp             EEEHHHHHH
T ss_pred             eeEHHHHHH
Confidence            999999875

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0017  Score=51.89  Aligned_cols=97  Identities=14%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             CCcchHHHHHHHHhhCCCCCeEEEECC---chHHHHHHHHc---CCeEEeCCCCCCCcHHHHHHHHHHccccCCEEEEEe
Q 022555           72 LGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQ  145 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i~~IvVv~~---~~~i~~~~~~~---~~~v~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~  145 (295)
                      +....|.++++.+.+.+..++++||.+   ++..+.+++..   ...++...+. .|...+...|++..  ..|++++++
T Consensus        13 n~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~-~g~~~a~n~~~~~a--~ge~i~~lD   89 (265)
T d1omza_          13 NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQT-ANKMRNRLQVFPEV--ETNAVLMVD   89 (265)
T ss_dssp             SCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECS-SCCGGGGGSCCTTC--CSSEEEEEC
T ss_pred             CCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCC-CCchhhhhhhHHhC--CcCEEEEeC
Confidence            445789999999987766677777764   23333333332   2333333222 24344445666666  468999999


Q ss_pred             CCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555          146 GDEPLIEPEIIDGVVKALQAAPDAVFS  172 (295)
Q Consensus       146 ~D~Pli~~~~i~~li~~~~~~~d~~v~  172 (295)
                      +|. ++.++.++.+++.+.++++..++
T Consensus        90 ~D~-~~~~~~l~~l~~~~~~~~~~~v~  115 (265)
T d1omza_          90 DDT-LISAQDLVFAFSIWQQFPDQIIG  115 (265)
T ss_dssp             TTE-EECHHHHHHHHHHHTTSTTSEEE
T ss_pred             ccc-CCCHHHHHHHHHHHHhCCCccee
Confidence            999 57899999999999876655443

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.2  Score=41.96  Aligned_cols=109  Identities=7%  Similarity=0.029  Sum_probs=67.3

Q ss_pred             CCCceEEEEEcCCCCCCCCCccccccCCcchHHHHHHHHhhCCCC---CeEEEECC---chH----HHHHHHHcCC--eE
Q 022555           46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD---DEK----IAECCQQFGA--DV  113 (295)
Q Consensus        46 ~~~~i~aiIlAaG~gsRl~~K~l~~i~gkpLl~~~l~~l~~~~~i---~~IvVv~~---~~~----i~~~~~~~~~--~v  113 (295)
                      .++.+++||++--.             ....|.++|+.+.+...-   .+|+||-+   ++.    ++++.++...  .+
T Consensus        20 ~~P~vSIIIp~yNe-------------~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~v   86 (328)
T d1xhba2          20 NLPTTSVVIVFHNE-------------AWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHV   86 (328)
T ss_dssp             CCCCEEEEEEESSC-------------CHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEE
T ss_pred             CCCCEEEEEeccCC-------------cHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEE
Confidence            45668888886421             113578888887643222   36777754   222    3344444443  33


Q ss_pred             EeCCCCCCCcHHHHHHHHHHccccCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          114 IMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       114 ~~~~~~~~g~~~~i~~al~~~~~~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      +..+ .-.|-..+.-.|++..  ..+.++++++|. .+++..++.+++.+.++...++
T Consensus        87 i~~~-~n~G~~~a~N~Gi~~a--~gd~i~flD~D~-~~~p~~l~~l~~~~~~~~~~~v  140 (328)
T d1xhba2          87 IRME-QRSGLIRARLKGAAVS--RGQVITFLDAHC-ECTAGWLEPLLARIKHDRRTVV  140 (328)
T ss_dssp             EECS-SCCCHHHHHHHHHHHC--CSSEEEEEESSE-EECTTCHHHHHHHHHHCTTEEE
T ss_pred             EEec-ccccchHHHHHHHHhh--hcceeeecCccc-ccChhHHHHHHHHHhcCCCeEE
Confidence            4332 2234444566778776  478999999999 5688899999998887654443

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.14  E-value=0.61  Score=37.02  Aligned_cols=97  Identities=12%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             CCcchHHHHHHHHhhCCCC-CeEEEECC--chHHHHHHHH----cCCeEEeCCCC------CCCcH-HHHHHHHHHcccc
Q 022555           72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAECCQQ----FGADVIMTSES------CRNGT-ERCNEALQKLEKK  137 (295)
Q Consensus        72 ~gkpLl~~~l~~l~~~~~i-~~IvVv~~--~~~i~~~~~~----~~~~v~~~~~~------~~g~~-~~i~~al~~~~~~  137 (295)
                      ++...|..+++.+.+...- -+|+|+-+  .+...+++++    ..++++..+..      ...|. .+.-.|++..  .
T Consensus        11 N~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a--~   88 (255)
T d1qg8a_          11 NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMA--E   88 (255)
T ss_dssp             SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHC--C
T ss_pred             CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccccccccccc--c
Confidence            4455788899888754321 26766654  3444555543    23444432210      12333 3455677777  4


Q ss_pred             CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 022555          138 YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF  171 (295)
Q Consensus       138 ~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v  171 (295)
                      .++++++++|. ++.+..++.+++.+.++++..+
T Consensus        89 g~~i~~lD~Dd-~~~p~~l~~~~~~~~~~~~~~~  121 (255)
T d1qg8a_          89 GEYITYATDDN-IYMPDRLLKMVRELDTHPEKAV  121 (255)
T ss_dssp             CSEEEEEETTE-EECTTHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccc-ccccchHHHHHHHHHhCCCCCe
Confidence            78999999999 4578899999998877655443

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=82.67  E-value=7.4  Score=33.15  Aligned_cols=96  Identities=14%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             chHHHHHHHHhhCCCCCeEEEECC--ch---HHHHHH----HHcCCeE--EeCCC--CCCCc-HHHHHHH----HHHccc
Q 022555           75 PMIQRTWERSKLATTLDHLVVATD--DE---KIAECC----QQFGADV--IMTSE--SCRNG-TERCNEA----LQKLEK  136 (295)
Q Consensus        75 pLl~~~l~~l~~~~~i~~IvVv~~--~~---~i~~~~----~~~~~~v--~~~~~--~~~g~-~~~i~~a----l~~~~~  136 (295)
                      +++..+++.+...+..+.|+|+-+  ++   .+.+..    ...+..+  .....  ....| ..++..|    +...  
T Consensus        13 ~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~A~~~g~~~a--   90 (381)
T d2bo4a1          13 EVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEET--   90 (381)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHHHHHHHHHhC--
Confidence            688999998888888877777654  22   222211    1223322  22211  11122 2334344    4444  


Q ss_pred             cCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 022555          137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS  172 (295)
Q Consensus       137 ~~d~vlv~~~D~Pli~~~~i~~li~~~~~~~d~~v~  172 (295)
                      ..|.++++++|.--.+++.+..++..+.++.|.+++
T Consensus        91 ~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g  126 (381)
T d2bo4a1          91 QWERIHFYDADITSFGPDWITKAEEAADFGYGLVRH  126 (381)
T ss_dssp             CCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcCeEEE
Confidence            478999999996446799999999998776565444