Citrus Sinensis ID: 022565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MSCSGRSDSSWIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEcccccEEEEEcccEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHEEEEcccHHHHHHHHHHHEcccEEEEEEccccccccHHHHHccccEEEEEcccccccccccccccccEEccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEcEEHHHEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mscsgrsdssWIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKssaldlpiflnchfvgelhacsvgtnftphvitinAGEDVMMKVISFSQQGPRAICILSangvisnvtlrqpdssggtltyegRFEILSLsgsfmltesqgtrsrsggmsvslaspdgrvvGGAVAGLLVAAGPVQVVVGsflpgnqqeqkpkkqkaesipaivtpapsivgvipvnnaekegtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Flexible Loop (DISEMBL)
mscsgrsdsswiAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISnvtlrqpdssggtLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLpgnqqeqkpkkqkaesipaivtpapsivgvIPVNNAEKEGtdghrqqnssplkpntasspfrrdnwptiqepinsttdinislpas
Low Complexity Region (SEG)
MSCSGRSDSSWIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDgrvvggavagllvaagpvqvvvgSFLPGNqqeqkpkkqkAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Disordered region (IsUnstruct)
*********SWIAWMKIVISSVDRSFFMFQFVTILALPVETEVV**********KVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQ****GGTLTYEGRFEILSLSGSF************************RVVGGAVAGLLVAAGPVQVVVGSFL********************V***PSIVGVIP******************************************************
Disordered Region (DISOPRED)
***********IAWMKIVISSVDRSFFMFQFVTI***************************************************ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ**RSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF********************************************************************************NISLP**
Disordered Region (DISEMBL)
********SSWIAWMKIVISSVDRSFFMFQFVTILALPVET*************KVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFML***************SLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN*************IPAIVTPAPSIVGVIPVNNAEK********************SPFRRDNWPTIQEPINSTTD********
Disordered Region (DISPRO)
********SSWIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCSGRSDSSWIAWMKIVISSVDRSFFMFQFVTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTASSPFRRDNWPTIQEPINSTTDINISLPAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.372	0.353	0.360	4e-07

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 12/122 (9%)

Query: 96  HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQP---------DSSGGTLT 146
           HV+ ++ G D++  V +++++  R + +L  NG +SNVTLRQP            GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175

Query: 147 YEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVG 206
             GRFEILSL+G+ +   +         +S+ LA   G+VVGG+V   L+A+ PV ++  
Sbjct: 176 LHGRFEILSLTGTVLPPPAPPGAGG---LSIFLAGGQGQVVGGSVVAPLIASAPVILMAA 232

Query: 207 SF 208
           SF
Sbjct: 233 SF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224067757	247	predicted protein [Populus trichocarpa]	0.694	0.829	0.745	5e-80
224130006	324	predicted protein [Populus trichocarpa]	0.694	0.632	0.739	5e-80
255541324	324	DNA binding protein, putative [Ricinus c	0.688	0.626	0.754	1e-72
255640322	231	unknown [Glycine max]	0.722	0.922	0.681	1e-69
356532097	337	PREDICTED: uncharacterized protein LOC10	0.722	0.632	0.681	2e-69
449432243	348	PREDICTED: uncharacterized protein LOC10	0.742	0.629	0.683	2e-67
449522149	369	PREDICTED: uncharacterized LOC101212918	0.742	0.593	0.683	2e-67
147794107	457	hypothetical protein VITISV_031923 [Viti	0.725	0.468	0.693	1e-66
225426649	346	PREDICTED: uncharacterized protein LOC10	0.725	0.618	0.689	1e-66
359807105	346	uncharacterized protein LOC100796830 [Gl	0.857	0.731	0.602	2e-66

>gi|224067757|ref|XP_002302537.1| predicted protein [Populus trichocarpa] gi|222844263|gb|EEE81810.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 167/224 (74%), Positives = 179/224 (79%), Gaps = 19/224 (8%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           L    +GE  A SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTL
Sbjct: 35  LGMENLGEWAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTL 94

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM TESQGTRSRSGGMSVSLASPDGRVVGG+VAGLL
Sbjct: 95  RQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLASPDGRVVGGSVAGLL 154

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKE---GTDG 252
           VAA PVQVVVGSFL GN Q+QKPKK K +SIPA   PAP    VIPV+ AE+E   GT  
Sbjct: 155 VAASPVQVVVGSFLAGNHQDQKPKKPKIDSIPATFAPAP----VIPVSIAEREESVGTPH 210

Query: 253 HRQQNSSPLKPNTASSPFRRDNWPT---IQEPINSTTDINISLP 293
            +QQN         SS F+R+NW T   +Q+  NS TDINISLP
Sbjct: 211 GQQQN---------SSSFQRENWATMHSMQDVRNSVTDINISLP 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130006|ref|XP_002320727.1| predicted protein [Populus trichocarpa] gi|222861500|gb|EEE99042.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/223 (73%), Positives = 178/223 (79%), Gaps = 18/223 (8%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           +    +GE  A SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTL
Sbjct: 113 MGMENLGEWAANSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTL 172

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM TE QGTRSRSGGMSVSLASPDGRVVGG+VAGLL
Sbjct: 173 RQPDSSGGTLTYEGRFEILSLSGSFMPTEIQGTRSRSGGMSVSLASPDGRVVGGSVAGLL 232

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGTDG--H 253
           VAA PVQVVVGSFLPGN QEQKPKK K +SIPA   PAP+    IP + AE+E + G   
Sbjct: 233 VAASPVQVVVGSFLPGNHQEQKPKKPKIDSIPATFAPAPA----IPASIAEREESAGTPQ 288

Query: 254 RQQNSSPLKPNTASSPFRRDNWPT---IQEPINSTTDINISLP 293
            QQN         SSPF+R+NW T   +Q+  NS TDINISLP
Sbjct: 289 GQQN---------SSPFQRENWATMHSMQDVRNSGTDINISLP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541324|ref|XP_002511726.1| DNA binding protein, putative [Ricinus communis] gi|223548906|gb|EEF50395.1| DNA binding protein, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/216 (75%), Positives = 176/216 (81%), Gaps = 13/216 (6%)

Query: 82  GELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSS 141
           G+  + SVGTNFTPHVIT+NAGEDV MKVISFSQQGPRAICILSANGVISNVTLRQPDSS
Sbjct: 116 GDWASGSVGTNFTPHVITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSS 175

Query: 142 GGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPV 201
           GGTLTYEGRFEILSLSGSFM TESQGTRSRSGGMSVSLASPDGRVVGG VAGLLVAA PV
Sbjct: 176 GGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPV 235

Query: 202 QVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSP 260
           QVVVGSFLPGN Q+QKPKK K + +PA +TPA +I   IPV NAE++ +  GH  QN   
Sbjct: 236 QVVVGSFLPGNHQDQKPKKIKIDPVPASITPAQTIAIPIPVTNAERDDSMGGHGLQN--- 292

Query: 261 LKPNTASSPFRRDNWPT---IQEPINSTTDINISLP 293
                 SS FRR+NW T   +QE   S TDINISLP
Sbjct: 293 ------SSSFRRENWTTMQPVQEMRTSGTDINISLP 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640322|gb|ACU20449.1| unknown [Glycine max]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/220 (68%), Positives = 171/220 (77%), Gaps = 7/220 (3%)

Query: 83  ELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG 142
           +L   SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDSSG
Sbjct: 12  DLFGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSG 71

Query: 143 GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQ 202
           GTLTYEGRFEILSLSGSFM T++QGTRSRSGGMSVSL+SPDGR+VGG VAGLLVAAGPVQ
Sbjct: 72  GTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGPVQ 131

Query: 203 VVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPL 261
           VVVGSFLP N Q++KPKK K++  PA VTP+ ++    P  N EKE    GH   N+S  
Sbjct: 132 VVVGSFLPNNPQDKKPKKPKSDYAPANVTPSIAVSSAPPPTNGEKEDVMGGHLLHNNSGT 191

Query: 262 KPNTASSP---FRRDNWPTIQEPINS---TTDINISLPAS 295
             N+  SP   FRR+NW  +    +S    TDINISLP S
Sbjct: 192 TLNSNFSPPSAFRRENWVNMHSMADSMKLVTDINISLPDS 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532097|ref|XP_003534610.1| PREDICTED: uncharacterized protein LOC100791563 [Glycine max]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/220 (68%), Positives = 171/220 (77%), Gaps = 7/220 (3%)

Query: 83  ELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG 142
           +L   SVGTNF PH+IT+N GED+ MKVISFSQQGPRAICILSA+GVISNVTLRQPDSSG
Sbjct: 118 DLFGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSG 177

Query: 143 GTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQ 202
           GTLTYEGRFEILSLSGSFM T++QGTRSRSGGMSVSL+SPDGR+VGG VAGLLVAAGPVQ
Sbjct: 178 GTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLSSPDGRIVGGGVAGLLVAAGPVQ 237

Query: 203 VVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAEKEGT-DGHRQQNSSPL 261
           VVVGSFLP N Q++KPKK K++  PA VTP+ ++    P  N EKE    GH   N+S  
Sbjct: 238 VVVGSFLPNNPQDKKPKKPKSDYAPANVTPSIAVSSAPPPTNGEKEDVMGGHLLHNNSGT 297

Query: 262 KPNTASSP---FRRDNWPTIQEPINS---TTDINISLPAS 295
             N+  SP   FRR+NW  +    +S    TDINISLP S
Sbjct: 298 TLNSNFSPPSAFRRENWVNMHSMADSMKLVTDINISLPDS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432243|ref|XP_004133909.1| PREDICTED: uncharacterized protein LOC101212918 [Cucumis sativus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 181/231 (78%), Gaps = 12/231 (5%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           +   ++GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTL
Sbjct: 118 MGMEYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTL 177

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL
Sbjct: 178 RQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLL 237

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKA-ESIPAIV---TPAPSIVGVIPVNNAEKEGT- 250
           +AAGPVQVVVGSFLP +QQEQ+  K++  ESIP       P+ +    +P  NA+ E   
Sbjct: 238 IAAGPVQVVVGSFLPTSQQEQQKVKKQKPESIPTAAPGSVPSMAPPTTMPTTNADTEDNL 297

Query: 251 DGHRQQNSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLPA 294
           +G+  QN  PLKP   A SPF+RD W T      +QEP NS TDINISLP 
Sbjct: 298 NGNGVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLPG 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522149|ref|XP_004168090.1| PREDICTED: uncharacterized LOC101212918 [Cucumis sativus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 181/231 (78%), Gaps = 12/231 (5%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           +   ++GE +AC+VGTNF PH+IT+NAGEDV MK+ISFSQQGPRAICILSANGVISNVTL
Sbjct: 139 MGMEYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTL 198

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM TE+QGTRSR+GGMSVSLASPDGRVVGG VAGLL
Sbjct: 199 RQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLL 258

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKA-ESIPAIV---TPAPSIVGVIPVNNAEKEGT- 250
           +AAGPVQVVVGSFLP +QQEQ+  K++  ESIP       P+ +    +P  NA+ E   
Sbjct: 259 IAAGPVQVVVGSFLPTSQQEQQKVKKQKPESIPTAAPGSVPSMAPPTTMPTTNADTEDNL 318

Query: 251 DGHRQQNSSPLKP-NTASSPFRRDNWPT------IQEPINSTTDINISLPA 294
           +G+  QN  PLKP   A SPF+RD W T      +QEP NS TDINISLP 
Sbjct: 319 NGNGVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLPG 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794107|emb|CAN62363.1| hypothetical protein VITISV_031923 [Vitis vinifera]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 173/222 (77%), Gaps = 8/222 (3%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           +    +GE  ACSVG NFTPH+IT+N+GEDV MK+ISFSQQGPRAICILSANGVIS+VTL
Sbjct: 129 MELENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTL 188

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM ++S GTRSRSGGMSVSLASPDGRVVGG VAGLL
Sbjct: 189 RQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLL 248

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAE-KEGTDGHR 254
           VAA PVQVVVGSFL GNQ EQKPKKQK E I A    A      +P+++ E +E   GH 
Sbjct: 249 VAASPVQVVVGSFLTGNQHEQKPKKQKIEPISAARPTA-----AVPISSLEMEEPFGGHG 303

Query: 255 QQNSSPLKPNTASS-PFRRDNW-PTIQEPINSTTDINISLPA 294
           Q+ S+  KPN +SS  FR DNW P   +  N  TDIN+SLP 
Sbjct: 304 QRPSATPKPNLSSSTSFRGDNWSPLPSDSRNKATDINVSLPG 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426649|ref|XP_002274756.1| PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 174/222 (78%), Gaps = 8/222 (3%)

Query: 76  LNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTL 135
           +    +GE  ACSVG NFTPH+IT+N+GEDV MK+ISFSQQGPRAICILSANGVIS+VTL
Sbjct: 129 MELENLGEWVACSVGANFTPHIITVNSGEDVTMKIISFSQQGPRAICILSANGVISSVTL 188

Query: 136 RQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLL 195
           RQPDSSGGTLTYEGRFEILSLSGSFM ++S GTRSRSGGMSVSLASPDGRVVGG VAGLL
Sbjct: 189 RQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLL 248

Query: 196 VAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAE-KEGTDGHR 254
           VAA PVQVVVGSFL GNQ EQKPKKQK E I A    A      +P+++ E +E   GH 
Sbjct: 249 VAASPVQVVVGSFLTGNQHEQKPKKQKIEPISAARPTA-----AVPISSLEMEEPFGGHG 303

Query: 255 QQNSSPLKPN-TASSPFRRDNW-PTIQEPINSTTDINISLPA 294
           Q+ S+  KPN ++S+ FR DNW P   +  N  TDIN+SLP 
Sbjct: 304 QRPSATPKPNLSSSTSFRGDNWSPLPSDSRNKATDINVSLPG 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807105|ref|NP_001241091.1| uncharacterized protein LOC100796830 [Glycine max] gi|255644758|gb|ACU22881.1| unknown [Glycine max]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 168/279 (60%), Positives = 189/279 (67%), Gaps = 26/279 (9%)

Query: 32  VTILALPVETEVVSSQSNDQVASKVSASALFIYVKSSALDLPIFLNCHFVGELHACSVGT 91
           VT+   P+     +  SND  + K        Y  S  + L       ++G+L+ACS GT
Sbjct: 79  VTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKPSKKVGL------DYLGDLNACSDGT 132

Query: 92  NFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRF 151
           NF PH+IT+NAGED+ MKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRF
Sbjct: 133 NFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRF 192

Query: 152 EILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG 211
           EILSLSGSFM T++QGTRSR+GGMSVSLASPDGRVVGG VAGLLVAA PVQVVVGSFLP 
Sbjct: 193 EILSLSGSFMPTDNQGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPS 252

Query: 212 NQQEQKPKKQK------AESIPAI-VTPAPSIVGVIPVNNAEKEGTD----GHRQQNSSP 260
           +QQEQK KK K      A   P I V+P P      P  NAEKE  +     H  QNS  
Sbjct: 253 SQQEQKIKKSKSSDYGVATVTPTIAVSPTPP-----PPTNAEKEDVNVMGGAHVLQNSGT 307

Query: 261 LKPN-TASSPFRRDNWPTIQ---EPINSTTDINISLPAS 295
           L  N T  + FRRDNW  +    +   S TDINISLP S
Sbjct: 308 LNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.664	0.550	0.5	2.8e-43
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.664	0.616	0.526	3.5e-43
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.349	0.308	0.747	3e-37
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.369	0.269	0.711	4e-35
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.633	0.532	0.438	3.2e-33
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.322	0.226	0.757	3.2e-33
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.332	0.242	0.714	5.2e-33
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.349	0.295	0.592	3.9e-28
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.349	0.272	0.543	2.8e-27
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.620	0.416	0.372	9.4e-27

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 107/214 (50%), Positives = 129/214 (60%)

Query:    81 VGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 140
             +GE   CSVG NFTPH+IT+N GEDV MK+ISFSQQGPR+IC+LSANGVIS+VTLRQPDS
Sbjct:   158 LGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDS 217

Query:   141 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXX 200
             SGGTLTYEGRFEILSLSGSFM  +S GTRSR+GGMSVSLASPD                 
Sbjct:   218 SGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASP 277

Query:   201 XXXXXXSFLPGNXXXXXXXXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSP 260
                   SFL G                  +  +P+    IP+++A     D HR  +S  
Sbjct:   278 VQVVVGSFLAGTDHQDQKPKKNKHDF---MLSSPT--AAIPISSA----AD-HRTIHS-- 325

Query:   261 LKPNTASSPFRRDNWPT--IQEPINSTTDINISL 292
                  +S P   + W T    +P N  TDIN+++
Sbjct:   326 ----VSSLPVNNNTWQTSLASDPRNKHTDINVNV 355

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 109/207 (52%), Positives = 124/207 (59%)

Query:    89 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 148
             VG+NFTPHVIT+N GED+ M++ISFSQQGPRAICILSANGVISNVTLRQPDS GGTLTYE
Sbjct:   119 VGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYE 178

Query:   149 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXSF 208
             GRFEILSLSGSFM TE+QG++ RSGGMSVSLA PD                       SF
Sbjct:   179 GRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSF 238

Query:   209 LPGNXXXXXX-XXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTAS 267
             +  +            E  PA V   P      P   +    T+  R+Q   P  P    
Sbjct:   239 ITSDQQDHQKPRKQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPDREQ---P--P---- 289

Query:   268 SPFRRDNWPTIQE-PINSTTDINISLP 293
             S F   +W   Q+ P NS TDINISLP
Sbjct:   290 SSFGISSWTNGQDMPRNSATDINISLP 316

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 77/103 (74%), Positives = 89/103 (86%)

Query:    81 VGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 140
             +GE    S   NFTPH+IT+NAGEDV  ++ISFSQQG  AIC+L ANGV+S+VTLRQPDS
Sbjct:   138 LGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDS 197

Query:   141 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             SGGTLTYEGRFEILSLSG+FM ++S GTRSR+GGMSVSLASPD
Sbjct:   198 SGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPD 240

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 79/111 (71%), Positives = 89/111 (80%)

Query:    73 PIFLNCHFVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISN 132
             P+  N   VG   A  VG NFTPHV+ +NAGEDV MK+++FSQQG RAICILSANG ISN
Sbjct:   148 PVDTNLAGVGT--ADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISN 205

Query:   133 VTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             VTLRQ  +SGGTLTYEGRFEILSL+GSFM  +S GTRSR+GGMSV LA PD
Sbjct:   206 VTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPD 256

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 85/194 (43%), Positives = 109/194 (56%)

Query:    88 SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTY 147
             S G  FTPHV+T+ AGEDV  K+++ +  GPRA+C+LSANG ISNVTLRQ  +SGGT+TY
Sbjct:   158 STGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTY 217

Query:   148 EGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXS 207
             EGRFEILSLSGSF L E+ G RSR+GG+SVSL+SPD                       S
Sbjct:   218 EGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPVQIVVGS 277

Query:   208 FLP-GNXXXXXXXXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQ---QNSSPLKP 263
             FLP G             S P +   AP+ V + P ++ +  GT         + SP+  
Sbjct:   278 FLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTP-SSPQSRGTMSESSCGGGHGSPIHQ 336

Query:   264 NTASSPFRRD-NWP 276
             +T   P+    N P
Sbjct:   337 STGG-PYNNTINMP 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query:    89 VGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 148
             V  +FTPHV+T+NAGEDV MK+++FSQQG RAICILSANG ISNVTLRQ  +SGGTLTYE
Sbjct:   174 VSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

Query:   149 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             G FEILSL+GSF+ +ES GTRSR+GGMSVSLA  D
Sbjct:   234 GHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQD 268

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 70/98 (71%), Positives = 81/98 (82%)

Query:    86 ACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTL 145
             +C VG NFT H  T+N GEDV MKV+ +SQQG RAICILSA G ISNVTL QP ++GGTL
Sbjct:   153 SCYVGANFTTHQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTL 212

Query:   146 TYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             TYEGRFEILSLSGSFM TE+ GT+ R+GGMS+SLA P+
Sbjct:   213 TYEGRFEILSLSGSFMPTENGGTKGRAGGMSISLAGPN 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/103 (59%), Positives = 78/103 (75%)

Query:    81 VGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 140
             VGEL   S G +FTPHVI ++ GED+  KVI+FSQQGPRAIC+LSA+G +S  TL QP +
Sbjct:   150 VGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSA 209

Query:   141 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             S G + YEGRFEIL+LS S+++      R+R+G +SVSLASPD
Sbjct:   210 SPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPD 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 56/103 (54%), Positives = 81/103 (78%)

Query:    81 VGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS 140
             +GE    S G  F PHVI++ +GED++ KV+SFSQ+ PRA+CI+S  G +S+VTLR+P S
Sbjct:   165 LGEWMNTSAGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPAS 224

Query:   141 SGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPD 183
             +  +LT+EGRFEILSL GS+++ E  G++SR+GG+SVSL+ P+
Sbjct:   225 TTPSLTFEGRFEILSLGGSYLVNEEGGSKSRTGGLSVSLSGPE 267

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 70/188 (37%), Positives = 103/188 (54%)

Query:    90 GTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG--GTLTY 147
             G  FTPHVI +  GED+  K+++F+ QGPRAICILSA G ++NV LRQ ++S   GT+ Y
Sbjct:   218 GVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQANNSNPTGTVKY 277

Query:   148 EGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDXXXXXXXXXXXXXXXXXXXXXXXS 207
             EGRFEI+SLSGSF+ +ES GT +++G +SVSLA  +                       S
Sbjct:   278 EGRFEIISLSGSFLNSESNGTVTKTGNLSVSLAGHEGRIVGGCVDGMLVAGSQVQVIVGS 337

Query:   208 FLPGNXXXXXXXXXXAESIPAIVTPAPSIVGVIPVNNAEKEGTDGHRQQNSSPLKPNTAS 267
             F+P +          A++ P   +   +++    V       + G +Q +S   + N ++
Sbjct:   338 FVP-DGRKQKQSAGRAQNTPEPASAPANMLSFGGVGGPGSPRSQG-QQHSSESSEENESN 395

Query:   268 SPF-RRDN 274
             SP  RR N
Sbjct:   396 SPLHRRSN 403

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0033030801 hypothetical protein (247 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	2e-39
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-34
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	7e-06

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  133 bits (338), Expect = 2e-39
 Identities = 55/123 (44%), Positives = 71/123 (57%), Gaps = 9/123 (7%)

Query: 93  FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPD---SSGGTLTYEG 149
             PHV+ +  GED++  + +F++Q      +LS  G +SNVTLRQPD    S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 150 RFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSF 208
           RFEILSLSG+            SG + VSLA PDG+VVGG +A G + A G V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 209 LPG 211
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  121 bits (306), Expect = 1e-34
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 8/118 (6%)

Query: 94  TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS---SGGTLTYEGR 150
            P V+ +  GED++  + +F+++      +LS  G +SN TLR PD       T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 151 FEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208
            EILSLSG+    + +     SG + VSLA  DGRV+GG + G LV AG V+VV+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 103 GEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFEILSLSGS 159
           GED+  ++ +F++Q      +++A G + +  LR     +    T+      E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 160 FMLTESQGTRSRSGGMSVSLASPDGRVVGGAVA-GLLVAAGPVQVVVGSFLPGNQQEQKP 218
             L +          +  +L   +G  +GG +  G +     V +     LPG    ++ 
Sbjct: 79  IALDDP------FVHLHAALGDENGITLGGHLLEGEVFPTAEVFIRE---LPGELFRREF 129

Query: 219 KKQ 221
              
Sbjct: 130 DPT 132

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.93
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	81.82

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=2.1e-29  Score=207.52  Aligned_cols=112  Identities=32%  Similarity=0.445  Sum_probs=101.2

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           93 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDS--SGGTLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        93 ~kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~--~~~t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      ||+|++||+|||||+++|++||+++++.+++++|+|++++|+|++++.  .....+++|+|||+||+|||+..++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            799999999999999999999999999999999999999999999964  3358899999999999999999655    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  209 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~  209 (295)
                      |+.|+|++|+|+||+++||||.++.+ ..++||+|..+.
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~  114 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELS  114 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEec
Confidence            89999999999999999999998877 668999999983

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.93  E-value=8.7e-26  Score=193.72  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=105.8

Q ss_pred             CCceeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeeccEEEEEeeeeeeecCCCC
Q 022565           91 TNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQG  167 (295)
Q Consensus        91 ~~~kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~---~t~t~eGpfEILSLsGnIs~~dgg~  167 (295)
                      +.-+.|++||+||||+++.|.+||+++.+.+++++|||++++++|+|++.++   .+++++|+|||+||.|||+.++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            4457899999999999999999999999999999999999999999999765   4889999999999999999998   


Q ss_pred             CcCCCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCCC
Q 022565          168 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPG  211 (295)
Q Consensus       168 t~~p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~~  211 (295)
                         |+.|+|++|++++|+++||||.++++.. ++||+|.++...
T Consensus        84 ---p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~  123 (141)
T COG1661          84 ---PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGE  123 (141)
T ss_pred             ---CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEcccc
Confidence               7889999999999999999999999866 899999999443

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=81.82  E-value=0.42  Score=34.14  Aligned_cols=42  Identities=10%  Similarity=-0.008  Sum_probs=38.1

Q ss_pred             hhhhhhcccceEEEEeeeeeecccee---EEEecccchhhcceeeee
Q 022565           16 KIVISSVDRSFFMFQFVTILALPVET---EVVSSQSNDQVASKVSAS   59 (295)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   59 (295)
                      ..+..|+.++|-+++|.++...+.|+   +|+..++.-|  +|+.|.
T Consensus         6 ~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~L--k~m~i~   50 (51)
T PF08387_consen    6 SSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVL--KKMTIS   50 (51)
T ss_pred             CCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhh--cEEEEE
Confidence            45789999999999999999999998   9999999999  888875

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	7e-29
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	1e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	4e-19
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	4e-09
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-08
3htn_A	149	Putative DNA binding protein; DUF269 family protei	2e-08

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  107 bits (267), Expect = 7e-29
 Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 80  FVGELHACSVGTNFTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQP 138
                 +    +    + + +  G++V  ++ +F QQ   RA  I    G +++V LR  
Sbjct: 5   PNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA 64

Query: 139 DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAA 198
                T +  G FE++SL+G+  LT           + ++++ P G ++GG +       
Sbjct: 65  GQ-EATTSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVR 115

Query: 199 GPVQVVVGSFLPGNQQEQKP 218
             +++V+G   P     ++P
Sbjct: 116 TTLELVIGEL-PALTFSRQP 134

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  103 bits (258), Expect = 1e-27
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 95  PHVITINAGEDVMMKVISF-SQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEI 153
              + +  G D+  +++    Q    A  I S  G +S + +R  D S  TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLAD-SVSTLQVSAPFEI 62

Query: 154 LSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208
           LSLSG+               + +++A   GRV GG +    +     ++++  +
Sbjct: 63  LSLSGTLTYQHC--------HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 80.8 bits (199), Expect = 4e-19
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 88  SVGTNFTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---T 144
            + +    ++  +  GE+++  + +F ++      I++  G + N  +            
Sbjct: 4   GMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKV 63

Query: 145 LTYEGRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVV 204
           +  +G +E++SL G+  L + +          VSL + +G V GG +    V    + + 
Sbjct: 64  IPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ 119

Query: 205 VGSFLPGNQQEQKP 218
               L G + E+KP
Sbjct: 120 E---LKGEKIERKP 130

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 96  HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFE 152
            ++ ++ G+D++ ++  F ++       +SA G + +  +   D               E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 153 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVV 205
           ILSLSG+  + +S         + V L   DG V GG +    V A  V V+ 
Sbjct: 72  ILSLSGNVSMKDS----KPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP 119

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 94  TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGT--LTYEGRF 151
           T +++ +  G++V+  +   ++            G +S  T    D              
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 152 EILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208
           E+ +++GS    E +     S     ++     +  GG + GL V  G  ++ V  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 96  HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 152
           ++++IN   +++  + +F ++       ++  G I  +TLR       +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 153 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208
           I +L+G+      Q        + +++   D   + G +   +      + VV  +
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNG-AGEFVVEDY 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.94

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=4.8e-28  Score=205.51  Aligned_cols=112  Identities=16%  Similarity=0.264  Sum_probs=102.9

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           94 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        94 kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~---~t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      +.|++||++||||+++|.+||+++++..|+++++|++++|+|+|++.+.   ...+++|+|||+||+|||++.|+    +
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence            5899999999999999999999999988888999999999999998865   36799999999999999999876    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  210 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~  210 (295)
                      |+.|+|++|+|+||+++||||.++. +..++||+|.++..
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g~-V~~t~Ei~i~~~~~  130 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSAI-QNGAGEFVVEDYSE  130 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEEE-EEEEEEEEEEECCS
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCCE-EEEEEEEEEEEcCC
Confidence            8999999999999999999999985 47789999999843

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=4.4e-28  Score=203.50  Aligned_cols=111  Identities=17%  Similarity=0.281  Sum_probs=101.9

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           94 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        94 kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~---~t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      ++|++||++||||+++|.+||+++++..|+++++|++++|+|+|++.+.   ...+++|+|||+||+|||++.|+    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence            7999999999999999999999988888888999999999999998775   36889999999999999999876    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  210 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~  210 (295)
                      |+.|+|++++|+||+++||||.+++ .. ++||++.+|..
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~  123 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKG  123 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEE
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCC
Confidence            8999999999999999999999888 56 89999999943

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=3.9e-27  Score=198.33  Aligned_cols=110  Identities=23%  Similarity=0.272  Sum_probs=101.0

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           94 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        94 kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~---~t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      ++|++||++||||+++|.+||+++++..++++++|++++++|++++.+.   ..++++|+|||+||+|||++.|+    +
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence            6999999999999999999999988877777999999999999998876   37899999999999999999876    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  210 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~  210 (295)
                      |+.|+|++++ +||+++||||.+++|  .|+||+|.+|..
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~  122 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG  122 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence            8999999999 999999999999985  589999999943

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=2.5e-26  Score=193.37  Aligned_cols=108  Identities=26%  Similarity=0.385  Sum_probs=97.9

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHhCCc-cEEEEEeeceeeeEEEeCCCCCCCceeeeccEEEEEeeeeeeecCCCCCcCC
Q 022565           93 FTPHVITINAGEDVMMKVISFSQQGPR-AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR  171 (295)
Q Consensus        93 ~kphVIRL~pGEDVvesI~~farq~~i-ai~ILSAIGAVSnVTLr~~d~~~~t~t~eGpfEILSLsGnIs~~dgg~t~~p  171 (295)
                      |++|++||++||||+++|.+||+++++ +++|++++|++++++|++|+.+. +.+++|+|||+||+|||.++ +      
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-~------   73 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-H------   73 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-C------
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-C------
Confidence            899999999999999999999999666 67777999999999999999875 78899999999999999985 2      


Q ss_pred             CCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565          172 SGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  209 (295)
Q Consensus       172 ~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~  209 (295)
                       .|+|++++|+||+++||||.+++++..|+||+|.+|.
T Consensus        74 -~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~  110 (142)
T 2p6y_A           74 -CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYP  110 (142)
T ss_dssp             -EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECT
T ss_pred             -CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEcc
Confidence             5999999999999999999986666889999999984

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=5.7e-26  Score=193.67  Aligned_cols=113  Identities=23%  Similarity=0.413  Sum_probs=101.9

Q ss_pred             cCCCCceeEEEEecCCCcHHHHHHHHHHhCCc-cEEEEEeeceeeeEEEeCCCCCCCceeeeccEEEEEeeeeeeecCCC
Q 022565           88 SVGTNFTPHVITINAGEDVMMKVISFSQQGPR-AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQ  166 (295)
Q Consensus        88 s~g~~~kphVIRL~pGEDVvesI~~farq~~i-ai~ILSAIGAVSnVTLr~~d~~~~t~t~eGpfEILSLsGnIs~~dgg  166 (295)
                      +....+++|++||++||||+++|.+||+++++ +++|++++|++++++|||++.+. +.+++|+|||+||+|||+++ + 
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-~-   89 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT-G-   89 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT-E-
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC-C-
Confidence            45567999999999999999999999988555 67777999999999999999876 78999999999999999985 2 


Q ss_pred             CCcCCCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565          167 GTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  209 (295)
Q Consensus       167 ~t~~p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~  209 (295)
                            .|+|++++|+||+++||||.+++++..++||+|.+|.
T Consensus        90 ------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~  126 (154)
T 2hx0_A           90 ------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  126 (154)
T ss_dssp             ------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             ------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEcc
Confidence                  5999999999999999999987666789999999984

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.94  E-value=4.3e-26  Score=192.90  Aligned_cols=112  Identities=19%  Similarity=0.272  Sum_probs=101.4

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC---ceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           94 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        94 kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~~---t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      +.+++||+|||||+++|.+||+++++..++++++|++++++|++++.+.+   ..+++ ++||+||+|||++.|+    +
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            46999999999999999999999999999999999999999999998652   56788 8999999999999876    4


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeCC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP  210 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~~  210 (295)
                      |+.|+|++++|.||+++||||.++.|...|+||+|..+..
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~  127 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ  127 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC
Confidence            9999999999999999999999996654599999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-25
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	2e-17

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 90  GTNFTPHVITINAGEDVMMKVISFS-QQGPRAICILSANGVISNVTLRQPDSSGGTLTYE 148
            +    + + +  G++V  ++ +F  Q   RA  I    G +++V LR       T +  
Sbjct: 3   ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLT 61

Query: 149 GRFEILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 208
           G FE++SL+G+  LT           + ++++ P G ++GG +         +++V+G  
Sbjct: 62  GTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL 113

Query: 209 LPGNQQEQKP 218
            P     ++P
Sbjct: 114 -PALTFSRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 96  HVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLR---QPDSSGGTLTYEGRFE 152
            ++ ++ G+D++ ++  F ++       +SA G + +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 153 ILSLSGSFMLTESQGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLPGN 212
           ILSLSG+  + +S+        + V L   DG V GG +    V A  V V+    L G 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP---LSGE 123

Query: 213 QQEQKP 218
             E+  
Sbjct: 124 APERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.93

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=6.5e-28  Score=199.96  Aligned_cols=112  Identities=24%  Similarity=0.437  Sum_probs=102.8

Q ss_pred             CCCCceeEEEEecCCCcHHHHHHHHHHhCC-ccEEEEEeeceeeeEEEeCCCCCCCceeeeccEEEEEeeeeeeecCCCC
Q 022565           89 VGTNFTPHVITINAGEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQG  167 (295)
Q Consensus        89 ~g~~~kphVIRL~pGEDVvesI~~farq~~-iai~ILSAIGAVSnVTLr~~d~~~~t~t~eGpfEILSLsGnIs~~dgg~  167 (295)
                      .++..|.|++||+|||||+++|++||++++ ++++|++++|++++|+|++|+.+. ...++|+|||+||+|||++.+.  
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~-~~~~~g~~Ei~sl~G~I~~~~~--   78 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELTGE--   78 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETTEE--
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC-cEEecCcEEEEEEEEEeccCCC--
Confidence            356789999999999999999999999865 578889999999999999998775 7789999999999999998764  


Q ss_pred             CcCCCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565          168 TRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  209 (295)
Q Consensus       168 t~~p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~  209 (295)
                            |+|++|+|+||+++||||+++++++.++||+|.+|.
T Consensus        79 ------HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~  114 (136)
T d2hx0a1          79 ------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP  114 (136)
T ss_dssp             ------EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred             ------eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEcc
Confidence                  999999999999999999999888999999999994

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=5.9e-26  Score=187.07  Aligned_cols=109  Identities=23%  Similarity=0.301  Sum_probs=100.2

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCCC---ceeeeccEEEEEeeeeeeecCCCCCcC
Q 022565           94 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGG---TLTYEGRFEILSLSGSFMLTESQGTRS  170 (295)
Q Consensus        94 kphVIRL~pGEDVvesI~~farq~~iai~ILSAIGAVSnVTLr~~d~~~~---t~t~eGpfEILSLsGnIs~~dgg~t~~  170 (295)
                      |.|++||++||||+++|.+||+++++++|+++++|+++++++++++.+.+   .+.++|++||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            78999999999999999999999999999999999999999999988763   77999999999999999998874    


Q ss_pred             CCCceEEEEeCCCCcEEeeeecCceEEecceEEEEEEeC
Q 022565          171 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL  209 (295)
Q Consensus       171 p~~HlHISLAd~dGqV~GGHL~galIAAtTVEVVVgsf~  209 (295)
                      |+.|+|+++++ +|+++||||.++.+.  ++|+++.++.
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~  121 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLS  121 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECB
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEec
Confidence            89999999997 799999999998774  4788888874