Citrus Sinensis ID: 022572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKRKH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccccccccHHHHHcccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHcEEccccHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
MKEGLDKLRSKVQSLITKvkgnnyptvdgiSYLEAKHLLLLNYCQSIVYYLLRKAkglsieghpVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTsvrvggnaiepvnpsanesgepqktedllkyrpnpdmlvsktdmttedgagvykppkfapasmdedktSRKERNALRKEKETLRQARQSTFMRELVNDlegrpeevREVVGVESRELTRYKEMMEERARQEEElftrapltKMEKKKMKHLKKSRngllglteSFYDEikslpieekderptnvsngsrgmgklekrkrkh
Flexible Loop (DISEMBL)
MKEGLDKLRSKVQSLitkvkgnnyptVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLtsvrvggnaiepvnpsanesgepqktedllkyrpnpDMLVSKTdmttedgagvykppkfapasmdedktsrkernalrkeketlrqarqstfmrelvndlegrpeevrevvgvesreltrykemmeerarqeeelftrapltkmekkkmkhlkksrngllgltesFYDEIKSlpieekderptnvsngsrgmgklekrkrkh
Low Complexity Region (SEG)
MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLegrpeevrevvgvesreLTRYKemmeerarqeeeLFTRAPLTkmekkkmkhlkkSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKRKH
Disordered region (IsUnstruct)
*************SLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG**********************************************************************************************************************************************************L***FY***********************************
Disordered Region (DISOPRED)
**********KVQ****************ISYLEAKHLLLLNYCQSIVYYLLRK**********VVQSLVEIRLFLEKIRPIDRKLQYQIQKLT*********************************************************************************************************************************QEEELF*****************************FY***********************************
Disordered Region (DISEMBL)
*********SKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPS********KTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAP**********************LRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKM**********SRNGLLGLTESFYDEIKSLPIEEKD***********************
Disordered Region (DISPRO)
MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVG************************KYRPN*D***S*********AGVYKPPKFAPASMDEDKTSRKERNALRK**ETLRQ*RQSTFMRELVNDLEGRPEEVREV*************MMEERARQEEELFTRAPLTKMEKKK************G***SF*D*IKSL*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTxxxxxxxxxxxxxxxxxxxxxTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRKRKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q2KII6	315	Neuroguidin OS=Bos taurus	yes	no	0.854	0.8	0.317	1e-27
Q5M985	316	Neuroguidin-B (Fragment)	N/A	no	0.820	0.765	0.326	6e-27
Q4KLC4	317	Neuroguidin-A OS=Xenopus	N/A	no	0.820	0.763	0.326	8e-27
Q28IV8	316	Neuroguidin OS=Xenopus tr	yes	no	0.820	0.765	0.319	3e-26
Q9DB96	315	Neuroguidin OS=Mus muscul	yes	no	0.820	0.768	0.305	1e-25
Q8NEJ9	315	Neuroguidin OS=Homo sapie	yes	no	0.820	0.768	0.308	4e-25
Q6PFJ1	315	Neuroguidin OS=Danio reri	yes	no	0.779	0.730	0.314	1e-22
Q6AXX4	470	Something about silencing	no	no	0.474	0.297	0.291	2e-11
Q09713	327	Uncharacterized protein C	yes	no	0.610	0.550	0.289	5e-11
Q9JI13	469	Something about silencing	no	no	0.338	0.213	0.33	8e-11

>sp|Q2KII6|NGDN_BOVIN Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 47/299 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           ++E +  + ++VQ+L  KV+   YPT  G+S LE K  LLL Y   + + +L KA G S+
Sbjct: 21  LQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSL 80

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                
Sbjct: 81  QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------N 125

Query: 121 DLLKYRPNPDMLVSKTDMTT----------------EDGAGV---YKPPKFAPASMDEDK 161
           D L+++P+P  ++SK                     + G G    Y PP+  P   DE +
Sbjct: 126 DPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAKKYVPPRLVPVHYDETE 185

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R E+  L + K   R+A  S+ +REL       PEE+R+        +TR  +  + R
Sbjct: 186 AER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL----PIEEKDERPT 276
              EE +  R  ++K EK + K      + L  LT   + +I +L    P  ++D+ PT
Sbjct: 239 INYEESMMVRLSVSKREKGRRKRANVMSSQLHSLT--HFSDISALTGGTPHLDEDQNPT 295

Involved in the translational repression of cytoplasmic polyadenylation element (CPE)-containing mRNAs.
Bos taurus (taxid: 9913)

>sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 43/285 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           +++ + K+ + VQ L  KV+ + Y T  G+S+LE K  LLL Y Q + + +L K  G SI
Sbjct: 21  LQDQITKVTAHVQDLTQKVRSSIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 80

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                
Sbjct: 81  KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------N 125

Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------YKPPKFAPASMDEDK 161
           D L+++PNP  L+SK          + E+GA  GV          Y PP+ AP   D+ +
Sbjct: 126 DPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRYIPPRLAPVHYDDTE 185

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R+ R   R +K  L     S+ +REL       PEE+RE     +  + R+ +  + R
Sbjct: 186 AEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 238

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
              EE +  R  +T+ EK + K +    + L  LT   + +I +L
Sbjct: 239 INHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 281

May inhibit mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1

 Score =  121 bits (303), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 43/285 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           +++ + K+ + VQ L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI
Sbjct: 22  LQDQITKVTAHVQDLTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 81

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                
Sbjct: 82  KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVKAAVTGSLGE---------------N 126

Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGA--GV----------YKPPKFAPASMDEDK 161
           D L+++PNP  L+SK          + E+GA  GV          Y PP+ AP   D+ +
Sbjct: 127 DPLRFKPNPQNLMSKLSEPDERESDSGEEGAEGGVAKKPQSKVKRYIPPRLAPVHYDDTE 186

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R+ R   R +K  L     S+ +REL       PEE+RE     +  + R+ +  + R
Sbjct: 187 AEREHRIVERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 239

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
              EE +  R  +T+ EK + K +    + L  LT   + +I +L
Sbjct: 240 INHEESMMVRLNMTRKEKARKKRVLSMTSQLNSLTH--FSDISAL 282

May inhibit mRNA translation.

Xenopus laevis (taxid: 8355)

>sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 139/285 (48%), Gaps = 43/285 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           +++ + K+ + VQ+L  KV+   Y T  G+S+LE K  LLL Y Q + + +L K  G SI
Sbjct: 22  LQDQVTKVTAHVQALTQKVRSGIYNTDKGLSFLELKDQLLLFYLQDLTHLMLEKTNGKSI 81

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +G+P +  LVE+R  LEK+RPID+KL+YQI KL    V G+  E                
Sbjct: 82  KGNPGILRLVELRTVLEKMRPIDQKLKYQIDKLVRASVTGSLGE---------------N 126

Query: 121 DLLKYRPNPDMLVSKTDM-------TTEDGAGV------------YKPPKFAPASMDEDK 161
           D L+++PNP  L+SK          + ED A              Y PP+ AP   D+ +
Sbjct: 127 DPLRFKPNPQNLISKLSEADEGESDSGEDCAESGNAKKPQSKVKKYIPPRLAPVHYDDTE 186

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R+ R   R +K  L     S+ +REL       PEE+RE     +  + R+ +  + R
Sbjct: 187 AEREHRIIERAKKLAL----SSSTIRELKEQYSDAPEEIRE---GRAYHMMRHDKEEQHR 239

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
              EE +  R  +T+ EK + K +    + L  LT   + +I +L
Sbjct: 240 INHEESMMVRLNMTRKEKARKKRVLAMTSQLNSLTH--FSDISAL 282

May inhibit mRNA translation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9DB96|NGDN_MOUSE Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 43/285 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           ++E +  + +++Q+L TKV+   Y T  G+S+LE K  LLL Y   + + +L KA G S+
Sbjct: 21  LQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASL 80

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                
Sbjct: 81  QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSE---------------N 125

Query: 121 DLLKYRPNPDMLV-------------------SKTDMTTEDGAGVYKPPKFAPASMDEDK 161
           D L+++P+P  +V                   +    + +  A  Y PP+  P   DE +
Sbjct: 126 DPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHYDETE 185

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R+++  L K K   R+A  S+ +REL       PEE+R+        +TR  +  + R
Sbjct: 186 AEREQKR-LEKAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
              EE +  R  ++K EK   +      + L  LT   + +I +L
Sbjct: 239 VNYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTH--FSDISAL 281

Inhibits mRNA translation in a cytoplasmic polyadenylation element (CPE)-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q8NEJ9|NGDN_HUMAN Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 43/285 (15%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           ++E +  + ++V+SL  KV+   YPT  G+S+LE K  LLL Y   + + +L KA G S+
Sbjct: 21  LQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSL 80

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           +GH  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E                
Sbjct: 81  QGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSE---------------N 125

Query: 121 DLLKYRPNPDMLVSK-------------------TDMTTEDGAGVYKPPKFAPASMDEDK 161
           D L+++P+P  ++SK                      + +  +  Y PP+  P   DE +
Sbjct: 126 DPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETE 185

Query: 162 TSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEER 221
             R E+  L + K   R+A  S+ +REL       PEE+R+        +TR  +  + R
Sbjct: 186 AER-EKKRLERAK---RRALSSSVIRELKEQYSDAPEEIRD---ARHPHVTRQSQEDQHR 238

Query: 222 ARQEEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSL 266
              EE +  R  ++K EK + K      + L  LT   + +I +L
Sbjct: 239 INYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTH--FSDISAL 281

Involved in the translational repression of cytoplasmic polyadenylation element (CPE)-containing mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q6PFJ1|NGDN_DANRE Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 135/277 (48%), Gaps = 47/277 (16%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LLL Y Q I + +  K +G S+
Sbjct: 25  LTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESL 84

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           + +  +  LV IR  LEK+RP+D+KL+YQI KL    V G+  E                
Sbjct: 85  KDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE---------------N 129

Query: 121 DLLKYRPNPDMLVSK---TDMTTEDGAGV-------------YKPPKFAPASMDEDKTSR 164
           D L +RPNP  LVSK   ++ + +DG G              Y PP+ AP   D D T  
Sbjct: 130 DPLHFRPNPQSLVSKLSESEDSDDDGVGGKTKEQKEPSGGRRYVPPRIAPMHYDGDLTE- 188

Query: 165 KERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQ 224
            +R   R EK+  R A +S+ ++EL       PEE+R     + R+    ++  EE  R+
Sbjct: 189 ADRQKERVEKQK-RAALRSSVIQELRQQYSDAPEEIR-----DRRDFQTDRQGREELNRK 242

Query: 225 --EEELFTRAPLTKMEKKKMKHLKKSRNGLLGLTESF 259
             EE +  R   T+ +K +       + G++G+T   
Sbjct: 243 NYEESMMVRLSTTRDQKLR-------KRGMMGMTSQL 272

May inhibit mRNA translation.

Danio rerio (taxid: 7955)

>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 OS=Rattus norvegicus GN=Utp3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 18/158 (11%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           +K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +I +YL+ KA+ +  
Sbjct: 229 LKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPA 288

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
            GHPV++ LV  R  + K+  +D+KL  +I+ L + + G    + +NP A          
Sbjct: 289 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGKKD-LNPKAK--------- 338

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMD 158
            L K +P       K+   T+  A + + P+F  A+++
Sbjct: 339 -LTKTKP-------KSAKQTDVNADLTEEPEFDEAALE 368

Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain.

Rattus norvegicus (taxid: 10116)

>sp|Q09713|YA36_SCHPO Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 48/228 (21%)

Query: 39  LLLNYCQSIVYYLLRKAKGLSIEGH-PVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVR 97
           LLL+Y Q + + +L K    S   H  VV+ LV++R+ +EKIRP++ ++QY + KL  +R
Sbjct: 35  LLLSYVQKLAFLMLVKLDDESFLQHQDVVEKLVQLRIEIEKIRPLENRIQYSVDKL--LR 92

Query: 98  VG------GNAIEPVNPSANESGEPQKTEDLLK--YRPN-------PDMLVSKTDMTTED 142
                   G+  EP N     +G  + ++D LK  Y+PN        D   S+ ++  ED
Sbjct: 93  AAGRKEEIGSIKEPEN-----NGNDKDSQDSLKLHYKPNLSEFADDSDGPASENNVVKED 147

Query: 143 GA-----------------GVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTF 185
                              G+Y+PP+    +MD +K +R   N L  E  +   +     
Sbjct: 148 DKSSISSEDEEEELRSAKDGIYRPPRIRAVTMDSEKRTRHRPNHLVDEFVSSDMSSVPQS 207

Query: 186 MRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP 233
           M  + ++LE R      V+  + REL +    M ER   EE  +TR P
Sbjct: 208 MPSVGSNLEKRG----RVIHADERELQK----MRERIEYEESNYTRLP 247

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 OS=Mus musculus GN=Utp3 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 60/100 (60%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           ++  L +++ +++ L+  V+    PT  G  YL+ K+ L LNYC +I +YL+ KA+ +  
Sbjct: 229 LQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPA 288

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGG 100
            GHPV++ LV  R  + K+  +D+KL  +I+ L + + G 
Sbjct: 289 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGA 328

Essential for gene silencing: has a role in the structure of silenced chromatin. Plays a role in the developing brain.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
147777239	807	hypothetical protein VITISV_019017 [Viti	0.979	0.358	0.75	1e-121
359492964	320	PREDICTED: neuroguidin-like [Vitis vinif	0.952	0.878	0.756	1e-120
147773895	340	hypothetical protein VITISV_005614 [Viti	0.976	0.847	0.754	1e-119
225454220	316	PREDICTED: neuroguidin-B-like [Vitis vin	0.952	0.889	0.761	1e-119
297745286	362	unnamed protein product [Vitis vinifera]	0.952	0.776	0.761	1e-119
224084538	318	predicted protein [Populus trichocarpa]	0.986	0.915	0.652	1e-102
449436946	312	PREDICTED: neuroguidin-like [Cucumis sat	0.993	0.939	0.648	2e-99
356510136	333	PREDICTED: neuroguidin-like [Glycine max	0.952	0.843	0.633	4e-96
356518441	381	PREDICTED: neuroguidin-like [Glycine max	0.966	0.748	0.635	8e-96
255572870	358	something about silencing protein sas10,	0.959	0.790	0.660	2e-95

>gi|147777239|emb|CAN72154.1| hypothetical protein VITISV_019017 [Vitis vinifera]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/296 (75%), Positives = 254/296 (85%), Gaps = 7/296 (2%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +R KVQ+L  KVK +++PT DG+SYLEAKHLLL+NYCQS+VYYLLRKAKG SI
Sbjct: 474 MKEGLDAVRGKVQALTAKVKADHFPTADGMSYLEAKHLLLINYCQSLVYYLLRKAKGFSI 533

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV+SLVE+RLFLEKIRPID+KLQYQIQKLT  RV GNA+E V PS  +S  P  TE
Sbjct: 534 EGHPVVRSLVEMRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVEKVGPSEKDSETPN-TE 590

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAG---VYKPPKFAPASMDEDKTSRKERNALRKEKETL 177
           DLLKYRPNPDMLVSKTD T EDG G   VY+PPKFAP SM+EDK S+ E+NALRKEKET+
Sbjct: 591 DLLKYRPNPDMLVSKTDTTFEDGVGPVGVYRPPKFAPTSMEEDKISKHEKNALRKEKETV 650

Query: 178 RQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKM 237
           RQARQST++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RARQEEELFTRAPLT+M
Sbjct: 651 RQARQSTYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRARQEEELFTRAPLTRM 710

Query: 238 EKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK-DERPTNVSNGSRGMGKLEKRK 292
           EKKK KHL+KSRNGLLGLT+SFYDEIK+LP+EE   E+ T  +N S G  K +KRK
Sbjct: 711 EKKKEKHLRKSRNGLLGLTDSFYDEIKTLPLEEDFGEKTTGFNNSSSGGRKFKKRK 766

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492964|ref|XP_002283732.2| PREDICTED: neuroguidin-like [Vitis vinifera] gi|302142084|emb|CBI19287.3| unnamed protein product [Vitis vinifera]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/288 (75%), Positives = 249/288 (86%), Gaps = 7/288 (2%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +R KVQ+L  KVK +++PT DG+SYLEAKHLLL+NYCQS+VYYLLRKAKG SI
Sbjct: 25  MKEGLDAVRGKVQALTAKVKADHFPTADGMSYLEAKHLLLINYCQSLVYYLLRKAKGFSI 84

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV+SLVE+RLFLEKIRPID+KLQYQIQKLT  RV GNA+E V PS  +S  P  TE
Sbjct: 85  EGHPVVRSLVEMRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVEKVGPSEKDSETPN-TE 141

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAG---VYKPPKFAPASMDEDKTSRKERNALRKEKETL 177
           DLLKYRPNPDMLVSKTD T EDG G   VY+PPKFAP SM+EDK S+ E+NALRKEKET+
Sbjct: 142 DLLKYRPNPDMLVSKTDTTFEDGVGPVGVYRPPKFAPTSMEEDKISKHEKNALRKEKETV 201

Query: 178 RQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKM 237
           RQARQST++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RARQEEELFTRAPLT+M
Sbjct: 202 RQARQSTYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRARQEEELFTRAPLTRM 261

Query: 238 EKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK-DERPTNVSNGSRG 284
           EKKK KHL+KSRNGLLGLT+SFYDEIK+LP+EE   E+ T  +N S G
Sbjct: 262 EKKKEKHLRKSRNGLLGLTDSFYDEIKTLPLEEDFGEKTTGFNNSSSG 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773895|emb|CAN69547.1| hypothetical protein VITISV_005614 [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/293 (75%), Positives = 252/293 (86%), Gaps = 5/293 (1%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YCQS+VYYLLRKAKGLSI
Sbjct: 25  MKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYCQSLVYYLLRKAKGLSI 84

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E V+ S  +  E Q TE
Sbjct: 85  EGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVEKVS-SGEKDSETQNTE 141

Query: 121 DLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQ 179
           DLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S++ERN LRKEKETLRQ
Sbjct: 142 DLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMSKQERNVLRKEKETLRQ 201

Query: 180 ARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEK 239
           ARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RARQEEELFTRAPLT+ EK
Sbjct: 202 ARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRARQEEELFTRAPLTRTEK 261

Query: 240 KKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRGMGKLEKRK 292
           KK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S G  K +KRK
Sbjct: 262 KKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSGGR-KFKKRK 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454220|ref|XP_002274529.1| PREDICTED: neuroguidin-B-like [Vitis vinifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/285 (76%), Positives = 247/285 (86%), Gaps = 4/285 (1%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YCQS+VYYLLRKAKGLSI
Sbjct: 25  MKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYCQSLVYYLLRKAKGLSI 84

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E V+ S  +  E Q TE
Sbjct: 85  EGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVEKVS-SGEKDSETQNTE 141

Query: 121 DLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQ 179
           DLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S++ERN LRKEKETLRQ
Sbjct: 142 DLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMSKQERNVLRKEKETLRQ 201

Query: 180 ARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEK 239
           ARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RARQEEELFTRAPLT+ EK
Sbjct: 202 ARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRARQEEELFTRAPLTRTEK 261

Query: 240 KKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRG 284
           KK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S G
Sbjct: 262 KKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSGG 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745286|emb|CBI40366.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/285 (76%), Positives = 247/285 (86%), Gaps = 4/285 (1%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +RSKVQ+L  KVK +++PT DG+SYLEAKHLLLL+YCQS+VYYLLRKAKGLSI
Sbjct: 71  MKEGLDAVRSKVQALTAKVKADHFPTADGMSYLEAKHLLLLDYCQSLVYYLLRKAKGLSI 130

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV SLVEIRLFLEKIRPID+KLQYQIQKLT  RV GNA+E V+ S  +  E Q TE
Sbjct: 131 EGHPVVHSLVEIRLFLEKIRPIDKKLQYQIQKLT--RVTGNAVEKVS-SGEKDSETQNTE 187

Query: 121 DLLKYRPNPDMLVSKTDMTTEDG-AGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQ 179
           DLLKYRPNPDML+SKTDMT+E G  GVY+PPKFAPASM+EDK S++ERN LRKEKETLRQ
Sbjct: 188 DLLKYRPNPDMLISKTDMTSEGGVGGVYRPPKFAPASMEEDKMSKQERNVLRKEKETLRQ 247

Query: 180 ARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEK 239
           ARQS ++REL++DLEGRPEEVRE+VG ESREL RYKE ME+RARQEEELFTRAPLT+ EK
Sbjct: 248 ARQSAYVRELMDDLEGRPEEVREIVGTESRELIRYKEKMEQRARQEEELFTRAPLTRTEK 307

Query: 240 KKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERPTNVSNGSRG 284
           KK KHL+KSRNGLLGLT+SFYDEIK+LP+EE      +  N S G
Sbjct: 308 KKEKHLRKSRNGLLGLTDSFYDEIKTLPMEEDFGEKMSGFNNSGG 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084538|ref|XP_002307330.1| predicted protein [Populus trichocarpa] gi|118483580|gb|ABK93687.1| unknown [Populus trichocarpa] gi|222856779|gb|EEE94326.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/296 (65%), Positives = 240/296 (81%), Gaps = 5/296 (1%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           +KEGLD +R+KVQ+L  KVK NN+PT +GISYLEAKHLLLL+YCQS+V+YL+RKAKGLSI
Sbjct: 27  IKEGLDIVRNKVQALTAKVKTNNFPTTEGISYLEAKHLLLLSYCQSLVFYLIRKAKGLSI 86

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           E HPVV+SLVEIRLFLEKIR ID+KL+YQIQKLT  R  G+A + V+ S NES   +K E
Sbjct: 87  EKHPVVRSLVEIRLFLEKIRMIDKKLEYQIQKLT--RDAGSARDQVDVSENESKASKKPE 144

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQA 180
           D LKYRPNPD+L SKTDM  ++G GVY+PPK AP  M+EDK S++ERNALR++KETLR+A
Sbjct: 145 DNLKYRPNPDLLESKTDMLAQNG-GVYRPPKIAPMIMEEDKMSKQERNALRRQKETLRKA 203

Query: 181 RQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKK 240
           +   FM+EL++D+E RP EV+E  G++S E  RY E  E+RARQEEELFTR PLTK EK+
Sbjct: 204 KHG-FMKELIDDMEDRPAEVKEYAGLDSWESQRYVEQFEDRARQEEELFTRVPLTKKEKR 262

Query: 241 KMKHLKKSRNGLLGLTESFYDEIKSLPIEEK-DERPTNVSNGSRGMGKLEKRKRKH 295
           K K LKKSRNGLLGLT+ F DEIK+L +++  +E+ T +SNG   MGKL+KRKR +
Sbjct: 263 KQKDLKKSRNGLLGLTDGFNDEIKTLALDDDTNEQTTTISNGGSAMGKLKKRKRTY 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436946|ref|XP_004136253.1| PREDICTED: neuroguidin-like [Cucumis sativus] gi|449502782|ref|XP_004161741.1| PREDICTED: neuroguidin-like [Cucumis sativus]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/296 (64%), Positives = 238/296 (80%), Gaps = 3/296 (1%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD + +KVQ+L  KVK N  PT DGISYL+AK+ LLLNYC S+VYYLLRKAKG SI
Sbjct: 19  MKEGLDTVTNKVQALTAKVKSNQLPTSDGISYLDAKYFLLLNYCSSLVYYLLRKAKGFSI 78

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           EGHPVV+SLVEIRLFLEKIRPID+KL+YQIQKL  V +     E       +S  PQ  +
Sbjct: 79  EGHPVVRSLVEIRLFLEKIRPIDKKLEYQIQKLAKVSIVSK--ENAFMDEKDSATPQDVD 136

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQA 180
           D LKYRPNPDMLVSKT+ T EDG G+Y+PPKFAP SM+EDK SRKERN++RK+ +TLRQA
Sbjct: 137 DRLKYRPNPDMLVSKTEGTAEDGDGMYRPPKFAPTSMEEDKKSRKERNSMRKDLQTLRQA 196

Query: 181 RQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKK 240
           RQ+ +MREL++D+ G+PEE++E VG+E+RE+ RY   +EER R+EEELFTRAPLTKMEKK
Sbjct: 197 RQNDYMRELMDDMAGKPEEIKESVGLENREVARYVARLEERDRREEELFTRAPLTKMEKK 256

Query: 241 KMKHLKKSRNGLLGLTESFYDEIKSLPIE-EKDERPTNVSNGSRGMGKLEKRKRKH 295
           + K+LKKSR G+ G+T+SFY+E+KSLP+E   DE+PT+  +GS  M K +KRK +H
Sbjct: 257 REKYLKKSRYGMGGVTDSFYEEVKSLPLEVADDEQPTDFGSGSGRMRKHKKRKGRH 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510136|ref|XP_003523796.1| PREDICTED: neuroguidin-like [Glycine max]

 Score =  357 bits (916), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/300 (63%), Positives = 227/300 (75%), Gaps = 19/300 (6%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +R K+QSL   VK   YPT DG SYLE K+LLLLNYCQS+VYYLLRKAKGLSI
Sbjct: 26  MKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSI 85

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAI-------EPVNPSANES 113
           E HPVV+S+VEIRLFLEKIRPID+K QYQIQKL  ++   NAI       EPV  +    
Sbjct: 86  EDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKL--MQASENAIRSDILNKEPVASN---- 139

Query: 114 GEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKE 173
               K+ED  KYRPNPDMLVSK D+T++     Y+P KFAP SMD +K+S+ ERNALR+E
Sbjct: 140 ----KSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRRE 195

Query: 174 KETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAP 233
           KE L+QA+QS ++R L+ND+E RPEE+R+  G  SRE+ RY   M+ERARQEEELFTR P
Sbjct: 196 KEILKQAKQSDYLRTLMNDMEERPEEIRDFEGA-SREVDRYIAKMDERARQEEELFTRVP 254

Query: 234 LTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKD-ERPTNVSNGSRGMGKLEKRK 292
           LTK E+K+ K+LKKSRNGL GLTESFYDEIK+LP E+K  E+    SNGSR   +L+KRK
Sbjct: 255 LTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518441|ref|XP_003527887.1| PREDICTED: neuroguidin-like [Glycine max]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 188/296 (63%), Positives = 226/296 (76%), Gaps = 11/296 (3%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MKEGLD +R K+QSL   VK   YPT DG SYLEAK+LLLLNYCQS+VYYLLRKAKGLSI
Sbjct: 26  MKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLRKAKGLSI 85

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEP---Q 117
           E HPVV+S+VEIRLFLEKIRPID+K QYQIQKL        A E    S  ++ EP    
Sbjct: 86  EDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLIQ------ASENATRSDIQNKEPVASN 139

Query: 118 KTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETL 177
           K+ED+ KYRPNPDMLVSK D+T +DG   Y+P KFAP SMD +++S+ ERNALR+EKE L
Sbjct: 140 KSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVKFAPTSMDLERSSKYERNALRREKEIL 199

Query: 178 RQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKM 237
           +QA+QS ++R L+ND+E +PEE+R+  G  SRE+ RY   M+ERARQEEELFTR PLTK 
Sbjct: 200 KQAKQSDYIRTLMNDMEEKPEEIRDFEGA-SREVDRYIAKMDERARQEEELFTRVPLTKQ 258

Query: 238 EKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEK-DERPTNVSNGSRGMGKLEKRK 292
           E+K+ K+LKKSRNGL GLTESFYDEIK+LP  +K  E+    SNG R   +L+KRK
Sbjct: 259 ERKREKYLKKSRNGLQGLTESFYDEIKTLPFGDKTGEQVMGSSNGGRTNNRLKKRK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572870|ref|XP_002527367.1| something about silencing protein sas10, putative [Ricinus communis] gi|223533286|gb|EEF35039.1| something about silencing protein sas10, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 234/289 (80%), Gaps = 6/289 (2%)

Query: 1   MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
           MK+GLD +RSKV +L  KVK NN+ T DGISYLEAKHLLLLNYCQS+VYYLLRKAKGLSI
Sbjct: 50  MKDGLDTVRSKVDALTAKVKANNFLTADGISYLEAKHLLLLNYCQSLVYYLLRKAKGLSI 109

Query: 61  EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
           E HPVV+SLVEIRLFLEKIRPID+K++YQIQKL  +R  G A+E  +    ES  P+K+E
Sbjct: 110 EKHPVVRSLVEIRLFLEKIRPIDKKMEYQIQKL--IRDSGRAMEQPSLKEKESEAPEKSE 167

Query: 121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQA 180
           DLL YRPNPDMLVSK  M  +D +GVY+PPK AP+ M+EDK SR+ERNALR+EKETLR A
Sbjct: 168 DLLNYRPNPDMLVSKDRMPGDD-SGVYRPPKIAPSIMEEDKMSRQERNALRREKETLRHA 226

Query: 181 RQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEELFTRAPLTKMEKK 240
           +    M+E+++D+EGRPEEV+E +G +SRE TRY++  EERAR+EE+LFTRAP+TKMEKK
Sbjct: 227 K-GGLMKEMIDDMEGRPEEVQENLGDDSREFTRYQQQWEERARREEDLFTRAPITKMEKK 285

Query: 241 KMKHLKKSRNGLLGLTESFYDEIKSLPIEEK--DERPTNVSNGSRGMGK 287
           K K LKKSR+GLL LT+ FYDEIK+LP+E+   D+  +   N SR + K
Sbjct: 286 KEKQLKKSRDGLLALTDDFYDEIKTLPLEDDIGDQVTSFNKNSSRKLKK 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2026530	312	AT1G07840 "AT1G07840" [Arabido	0.966	0.913	0.506	8.2e-67
MGI|MGI:1916216	315	Ngdn "neuroguidin, EIF4E bindi	0.627	0.587	0.357	1.2e-24
UNIPROTKB|Q8NEJ9	315	NGDN "Neuroguidin" [Homo sapie	0.627	0.587	0.357	2.9e-23
UNIPROTKB|Q2KII6	315	NGDN "Neuroguidin" [Bos taurus	0.627	0.587	0.362	4.8e-23
DICTYBASE|DDB_G0269972	687	sas10 "U3 snoRNP protein" [Dic	0.633	0.272	0.325	1.4e-22
ZFIN|ZDB-GENE-031030-13	315	ngdn "neuroguidin, EIF4E bindi	0.627	0.587	0.348	5.7e-20
TAIR|locus:2044014	654	EMB2777 "AT2G43650" [Arabidops	0.355	0.160	0.364	3.9e-14
POMBASE|SPAC18B11.06	327	SPAC18B11.06 "U3 snoRNP-associ	0.559	0.504	0.272	3.5e-13
UNIPROTKB|E2R6S8	476	UTP3 "Uncharacterized protein"	0.566	0.350	0.252	1.8e-12
RGD|1308540	470	Utp3 "UTP3, small subunit (SSU	0.562	0.353	0.285	4.2e-12

TAIR|locus:2026530 AT1G07840 "AT1G07840" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 150/296 (50%), Positives = 190/296 (64%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             MK  LD +RSKV++L   VK N++PT  GISYLEAKHLLLL+YCQ +VYY+LRKAKGLSI
Sbjct:    27 MKNVLDVVRSKVEALTALVKANSFPTAGGISYLEAKHLLLLSYCQDLVYYILRKAKGLSI 86

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
             +GHP+V+SLVEIR+FLEKIRPID+KLQYQIQKLT+   GG   E  +     S E QK+E
Sbjct:    87 DGHPLVRSLVEIRMFLEKIRPIDKKLQYQIQKLTTA--GGPVTELAHSEGKGSCEAQKSE 144

Query:   121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQA 180
             DL  Y+P PD+L  K D   +DG  VY+PPKFAP SM EDKTS++ER+A RKEK   RQA
Sbjct:   145 DLSNYKPKPDLLADKEDDQEDDG--VYRPPKFAPMSM-EDKTSKQERDAARKEKHFFRQA 201

Query:   181 RQSTFMRELVNDLXXXXXXXXXXXXXXXXXLTRYKXXXXXXXXXXXXLFTRAPLTXXXXX 240
              ++T+M+++++DL                   R+             LFTRAP T     
Sbjct:   202 TENTYMKDVLDDLEDRPEEIRDYYGVESNEQKRFMAQYERQQKAEEELFTRAPRTKEDKK 261

Query:   241 XXXXXXXSRNGLLGLTESFYDEIKSLPIEEKD-ERPTNVSNGSRGMGKLEKRKRKH 295
                    S +GL  LTE+FYD+IK L   +KD E+P +     RG G  +KRK +H
Sbjct:   262 REKRLKSS-SGLHELTENFYDDIKFL---DKDGEKPRSFGRNKRG-GPFKKRKTRH 312

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

MGI|MGI:1916216 Ngdn "neuroguidin, EIF4E binding protein" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 69/193 (35%), Positives = 105/193 (54%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             ++E +  + +++Q+L TKV+   Y T  G+S+LE K  LLL Y   + + +L KA G S+
Sbjct:    21 LQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASL 80

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE--PVNPSANESGEPQK 118
             +GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E  P+    + S    K
Sbjct:    81 QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMVSK 140

Query:   119 --TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKET 176
               +ED  +         +    + +  A  Y PP+  P   DE +  R+++  L K K  
Sbjct:   141 LSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHYDETEAEREQKR-LEKAK-- 197

Query:   177 LRQARQSTFMREL 189
              R+A  S+ +REL
Sbjct:   198 -RRALSSSVIREL 209

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q8NEJ9 NGDN "Neuroguidin" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 69/193 (35%), Positives = 104/193 (53%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             ++E +  + ++V+SL  KV+   YPT  G+S+LE K  LLL Y   + + +L KA G S+
Sbjct:    21 LQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSL 80

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE--PVNPSANESGEPQK 118
             +GH  V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E  P+    + S    K
Sbjct:    81 QGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSENDPLRFKPHPSNMMSK 140

Query:   119 --TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKET 176
               +ED  +     D   +    + +  +  Y PP+  P   DE +  R E+  L + K  
Sbjct:   141 LSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETEAER-EKKRLERAK-- 197

Query:   177 LRQARQSTFMREL 189
              R+A  S+ +REL
Sbjct:   198 -RRALSSSVIREL 209

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

UNIPROTKB|Q2KII6 NGDN "Neuroguidin" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 70/193 (36%), Positives = 103/193 (53%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             ++E +  + ++VQ+L  KV+   YPT  G+S LE K  LLL Y   + + +L KA G S+
Sbjct:    21 LQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSL 80

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIE--PVNPSANESGEPQK 118
             +GHP V  LVEIR  LEK+RP+D+KL+YQI KL    V G+  E  P+    + S    K
Sbjct:    81 QGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSK 140

Query:   119 --TEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKET 176
               +ED  +         +    + +  A  Y PP+  P   DE +  R E+  L + K  
Sbjct:   141 LSSEDEEEDEAEEGQSGASGKKSGKGTAKKYVPPRLVPVHYDETEAER-EKKRLERAK-- 197

Query:   177 LRQARQSTFMREL 189
              R+A  S+ +REL
Sbjct:   198 -RRALSSSVIREL 209

GO:0030425 "dendrite" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

DICTYBASE|DDB_G0269972 sas10 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 66/203 (32%), Positives = 114/203 (56%)

Query:     2 KEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIE 61
             K  ++++++ +   + KVK N  PT  GIS+LE K+ LLL+YC +I Y+L+ K+ G+SI+
Sbjct:   235 KVKMNEVKTSILPALEKVKSNQLPTSKGISFLETKYQLLLSYCLNITYFLMLKSSGVSIK 294

Query:    62 GHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKL-----TSVRVGGNAIEPVNPSANES--- 113
              HPV+  L++ R  +EKI+P+D+KL+YQI KL     T   VG +  +P+    N S   
Sbjct:   295 DHPVIDQLIKCRTMIEKIQPLDKKLKYQIDKLLKSANTGTLVGSSKDDPLQHRPNLSSMG 354

Query:   114 GEPQKTEDLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPAS---MD-EDKTSRKERNA 169
             G+  + ED  +   N        +      AGVY+ PK   A    +D ED  ++K+   
Sbjct:   355 GDDDEDEDDEQGLDND---YDDENSRIAQRAGVYQAPKLYGAKGGVIDQEDAIAKKKSKE 411

Query:   170 LRKEKETLRQARQSTFMRELVND 192
             +R ++++++  + +  + E+  D
Sbjct:   412 IRDKQKSIK-GKMAKEIEEIYGD 433

GO:0030515 "snoRNA binding" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

ZFIN|ZDB-GENE-031030-13 ngdn "neuroguidin, EIF4E binding protein" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 67/192 (34%), Positives = 99/192 (51%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             + E +  + S V+ LI KV+   Y T  G+S+L+ ++ LLL Y Q I + +  K +G S+
Sbjct:    25 LTEQIVSVTSHVRELIKKVREKAYQTSKGLSFLDLRYHLLLFYLQDITHLISLKTEGESL 84

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
             + +  +  LV IR  LEK+RP+D+KL+YQI KL    V G+  E  N   +    PQ   
Sbjct:    85 KDNSAIHRLVTIRTVLEKMRPLDQKLKYQIDKLVRTAVTGSLSE--NDPLHFRPNPQSLV 142

Query:   121 DLLKYRPNPDM--LVSKTDMTTEDGAGV-YKPPKFAPASMDEDKTSRKERNALRKEKETL 177
               L    + D   +  KT    E   G  Y PP+ AP   D D T   +R   R EK+  
Sbjct:   143 SKLSESEDSDDDGVGGKTKEQKEPSGGRRYVPPRIAPMHYDGDLTEA-DRQKERVEKQK- 200

Query:   178 RQARQSTFMREL 189
             R A +S+ ++EL
Sbjct:   201 RAALRSSVIQEL 212

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2044014 EMB2777 "AT2G43650" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 39/107 (36%), Positives = 68/107 (63%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGIS-YLEAKHLLLLNYCQSIVYYLLRKAKGLS 59
             + + +++L SK+  ++ K+K     +++G++ YLE K LLLL YCQSI +YLL K++G  
Sbjct:   246 LNDAVEELESKINPVMNKLKEGEI-SLNGLARYLEVKQLLLLTYCQSITFYLLLKSEGQP 304

Query:    60 IEGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPV 106
             I  HPV+  LVEI+  L+KI+ +D +L    ++  +  +   A++ V
Sbjct:   305 IRDHPVLARLVEIKSLLDKIKELDEELPPGFEESLARSIANGAVQKV 351

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0016458 "gene silencing" evidence=IEA

POMBASE|SPAC18B11.06 SPAC18B11.06 "U3 snoRNP-associated protein Lcp5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 183 (69.5 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 46/169 (27%), Positives = 85/169 (50%)

Query:     5 LDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHP 64
             +D L   +Q+ +  +   +  + DG+S +  K  LLL+Y Q + + +L K    S   H 
Sbjct:     1 MDVLNKSIQTALEALPKTSSSSSDGVSLVSLKCQLLLSYVQKLAFLMLVKLDDESFLQHQ 60

Query:    65 -VVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTEDLL 123
              VV+ LV++R+ +EKIRP++ ++QY + KL         I  +    N +G  + ++D L
Sbjct:    61 DVVEKLVQLRIEIEKIRPLENRIQYSVDKLLRAAGRKEEIGSIKEPEN-NGNDKDSQDSL 119

Query:   124 K--YRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNAL 170
             K  Y+PN       +D    +   V +  K + +S DE++  R  ++ +
Sbjct:   120 KLHYKPNLSEFADDSDGPASENNVVKEDDKSSISSEDEEEELRSAKDGI 168

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=NAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

UNIPROTKB|E2R6S8 UTP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 44/174 (25%), Positives = 87/174 (50%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             +K  L +++ +++ L+  V+    P   G  YL  K+ L LNYC +I +YL+ KA+ +  
Sbjct:   230 LKLKLTEVKDELEPLLQLVEQGIIPPGKGSQYLRTKYNLYLNYCANISFYLILKARRVPA 289

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
              GHPV++ LV  R  + K+  +D+KL  +I+ L +++      EP++ +     +P+   
Sbjct:   290 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLKGDAGNKEPISKAKFTKAKPKSVS 349

Query:   121 DLLKYRPNPDMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRK-ERNALRKE 173
             +       P    + TD++ +         K+     D+ K  RK E +++ ++
Sbjct:   350 E------TPAAASAVTDVSDDSDFDEEAARKYYKEIEDQQKLKRKKEEDSIEEQ 397

GO:0007420 "brain development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|1308540 Utp3 "UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 50/175 (28%), Positives = 88/175 (50%)

Query:     1 MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
             +K  L +++ +++ LI  V+    P   G  YL+ K+ L LNYC +I +YL+ KA+ +  
Sbjct:   229 LKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPA 288

Query:    61 EGHPVVQSLVEIRLFLEKIRPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTE 120
              GHPV++ LV  R  + K+  +D+KL  +I+ L + + G    + +NP A  +    KT+
Sbjct:   289 HGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGK-KDLNPKAKLT----KTK 343

Query:   121 DLLKYRPNPDMLVSKTDMTTEDGAGV--YKPPKFAPASMDEDKTSRKERNALRKE 173
                K     D+    T+    D A +  YK  +  P    + + +  E  AL ++
Sbjct:   344 P--KSAKQTDVNADLTEEPEFDEAALEFYKEMEDRPELKRKKEENSAEEQALEEQ 396

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007420 "brain development" evidence=ISO;ISS

GO:0016568 "chromatin modification" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015079001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (319 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
pfam04000	81	pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family	3e-14

>gnl|CDD|217836 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 1  MKEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSI 60
          + + LD+L   ++ L+ KVK      +   S L+AK+ LLL Y  ++++YLL K  G+ I
Sbjct: 5  LSKSLDELEESLKPLLKKVKEKES-ELPPASLLKAKNELLLAYLINLLFYLLLKLSGVDI 63

Query: 61 EGHPVVQSLVEIRLFLEK 78
          + HPV++ LV +R++LEK
Sbjct: 64 KDHPVMEELVRLRVYLEK 81

This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex. It also includes the human C1D protein and Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs, and Sas10 which has been identified as a regulator of chromatin silencing. This family also includes the human protein Neuroguidin an initiation factor 4E (eIF4E) binding protein. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG3117	340	consensus Protein involved in rRNA processing [RNA	100.0
PF04000	85	Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR00	99.74
KOG4835	144	consensus DNA-binding protein C1D involved in regu	97.85
KOG3118	517	consensus Disrupter of silencing SAS10 [Chromatin	97.62

>KOG3117 consensus Protein involved in rRNA processing [RNA processing and modification]

Probab=100.00  E-value=1.1e-51  Score=382.37  Aligned_cols=261  Identities=31%  Similarity=0.449  Sum_probs=198.4

Q ss_pred             cchHHHHHHHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHhhh
Q 022572            2 KEGLDKLRSKVQSLITKVKGNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGH-PVVQSLVEIRLFLEKIR   80 (295)
Q Consensus         2 k~~l~~v~~~v~pll~~vk~~~~~~~~GislL~~K~~lLLsY~~~L~~ylllK~~g~si~~h-pvv~rLve~R~~LEKir   80 (295)
                      .+.++.+.-.++.|++.+..+..++.+|+|||++||++||+|++.|+|+|+-|+.|.++..| |+|.|||++|++||||+
T Consensus        22 ~~q~~~~~k~~~~l~e~l~~ta~~~e~gvSlLsLKnqlll~Yl~~Lt~Lil~klddes~~~h~daveRlvqhRvvlEKir  101 (340)
T KOG3117|consen   22 SNQMDVLNKSIQTLLEALPKTASSSEDGVSLLSLKNQLLLSYLQKLTFLILVKLDDESFLQHQDAVERLVQHRVVLEKIR  101 (340)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCcccCceeeeechHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHhcc
Confidence            35678888899999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             hhHHhhHHHHHHHHhhhhcCCCcCCCCCC---CCCCCCCcccccccccCCCcccccccCC------------CCC-----
Q 022572           81 PIDRKLQYQIQKLTSVRVGGNAIEPVNPS---ANESGEPQKTEDLLKYRPNPDMLVSKTD------------MTT-----  140 (295)
Q Consensus        81 Ple~KL~yQIdKLl~~~a~~~~~~~~~~~---~~~~~~~~~~~D~L~~rPnp~~l~~~~~------------~~~-----  140 (295)
                      |||+||+|||||||  +++++++......   +++........-.+.|+||.+.+....+            +.+     
T Consensus       102 PLE~KlkyQiDKLl--raav~~es~~sn~e~r~n~~~~l~n~s~~~~~~~~~s~~~~~sd~peeee~edde~~ksa~~~e  179 (340)
T KOG3117|consen  102 PLENKLKYQIDKLL--RAAVRKESIGSNKEPRNNGNDKLSNMSLKLHYKPNLSEFADDSDGPEEEENEDDEDDKSAISSE  179 (340)
T ss_pred             cHHHHHHHHHHHHH--HHHhhhcccccccccccCCCCcccccccccccCcccccccccccCcccccccccccccccccch
Confidence            99999999999999  6665444322111   1111111111123445555555443321            110     


Q ss_pred             -------CCCCccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCchhhhcccchhHHhhH
Q 022572          141 -------EDGAGVYKPPKFAPASMDEDKTSRKERNALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTR  213 (295)
Q Consensus       141 -------~~~~gvYrPPKia~~~~~~~~~~~~er~~~r~ek~~~rra~~S~~m~el~~e~sd~PeE~~~~~g~~~~~~~r  213 (295)
                             ...+|+|+||||.||.|++. +..+.++.. .++ ..|++++|++|+||..+|||+|+|+..   ..+....|
T Consensus       180 ~~~ee~~~~e~gkYvpPRI~aV~~d~~-te~er~nk~-~E~-akrsamSssvi~elk~q~SDapeeir~---~~~~k~~R  253 (340)
T KOG3117|consen  180 DEEEELRSAEDGKYVPPRIRAVTYDEK-TERERPNKL-VEE-AKRSAMSSSVIQELKSQYSDAPEEIRG---RVIHKDER  253 (340)
T ss_pred             hhhhhhcccccCcccCCceeeecCchh-hhhcchhHH-HHH-HHHHhhhHHHHHHHHHhccccchhhhh---cccchhHH
Confidence                   12369999999999999932 222222222 232 348899999999999999999998763   32334456


Q ss_pred             HHHHHHHHHHHhhhcccccC-CCHHHHHHhhhhHhhhcCccCccccccccccCCCCCccC
Q 022572          214 YKEMMEERARQEEELFTRAP-LTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKD  272 (295)
Q Consensus       214 ~~~~~~Er~~yEE~nftRLp-~sKkeKkr~K~~~~~~n~~~g~~~~~f~d~~~l~~~~~~  272 (295)
                      +.++++++..|||+|||||| +||++|+++||.++  +.-++.+|+||+|+++|+.|-..
T Consensus       254 ~~qk~rrri~yEEsnftRL~~lsK~ekrksKr~~r--~~~~~~~~s~~eDfsals~g~~~  311 (340)
T KOG3117|consen  254 ELQKMRRRIEYEESNFTRLPKLSKKEKRKSKRVKR--HDYGGEDLSLDEDFSALSLGLTR  311 (340)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhccHHHHHHHHHhhh--hhccccccccccchhhhcccccc
Confidence            67778888899999999999 79999999999755  45567788899999999886554

>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []

Probab=99.74  E-value=9.7e-18  Score=129.24  Aligned_cols=77  Identities=42%  Similarity=0.706  Sum_probs=73.3

Q ss_pred             cchHHHHHHHHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Q 022572            2 KEGLDKLRSKVQSLITKVK---GNNYPTVDGISYLEAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEK   78 (295)
Q Consensus         2 k~~l~~v~~~v~pll~~vk---~~~~~~~~GislL~~K~~lLLsY~~~L~~ylllK~~g~si~~hpvv~rLve~R~~LEK   78 (295)
                      ..++.+|++.++++++.++   .+.+++.+|+||+.+|++++++||+|++||+++|+.|.++.+|||+++|+++|++|||
T Consensus         6 ~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r~~leK   85 (85)
T PF04000_consen    6 SESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIRQYLEK   85 (85)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHcC
Confidence            5689999999999999994   6778999999999999999999999999999999999999999999999999999986

It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].

>KOG4835 consensus DNA-binding protein C1D involved in regulation of double-strand break repair [Replication, recombination and repair]

Probab=97.85  E-value=5.3e-05  Score=65.26  Aligned_cols=54  Identities=30%  Similarity=0.599  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhhhhHHhhH
Q 022572           34 EAKHLLLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFLEKIRPIDRKLQ   87 (295)
Q Consensus        34 ~~K~~lLLsY~~~L~~ylllK~~g~si~~hpvv~rLve~R~~LEKirPle~KL~   87 (295)
                      ..|-.+++.|.++.+||+.+++.|+...+|||...|-.+|++++|++.++.++.
T Consensus        48 qAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL~Rvk~y~~k~Kqi~d~~~  101 (144)
T KOG4835|consen   48 QAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQELERVKVYMAKIKQINDRVK  101 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            589999999999999999999999999999999999999999999998887765

>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]

Probab=97.62  E-value=7.1e-05  Score=75.04  Aligned_cols=93  Identities=18%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             cchHHHHHHHHHHHHHHhhcC--CCCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 022572            2 KEGLDKLRSKVQSLITKVKGN--NYPTVDGISYLEAKHL---LLLNYCQSIVYYLLRKAKGLSIEGHPVVQSLVEIRLFL   76 (295)
Q Consensus         2 k~~l~~v~~~v~pll~~vk~~--~~~~~~GislL~~K~~---lLLsY~~~L~~ylllK~~g~si~~hpvv~rLve~R~~L   76 (295)
                      +..|.++.+.++|++.++...  .+|+..+-+||.....   |++.||.+++|+++..+..++-..|+|..+||-++.++
T Consensus       241 k~~l~el~s~l~t~~~~l~~~~~~L~~gee~~~lr~hp~m~~l~~~ke~w~s~~~l~s~~~vts~~~~v~~~i~~~~k~~  320 (517)
T KOG3118|consen  241 KDLLEELESKLNTYMSYLKELDEELPPGEEESLLRSHPNMAVLKVVKEDWLSFPLLDSVDRVTSDEAKVEVRIVLAEKQP  320 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhcCcchhhhhhhhhhhhhhccccccccccccccccchhhHhhhhhh
Confidence            457899999999999999977  7899999999999988   99999999999999999999999999999999999999


Q ss_pred             HhhhhhHHhhHHHHHHHH
Q 022572           77 EKIRPIDRKLQYQIQKLT   94 (295)
Q Consensus        77 EKirPle~KL~yQIdKLl   94 (295)
                      .+|.-.+.+..--++++.
T Consensus       321 ~kldn~~~e~~e~g~k~k  338 (517)
T KOG3118|consen  321 MKLDNAREEKKEKGDKLK  338 (517)
T ss_pred             hhhhhHHHHHHHhhhHHh
Confidence            999999888877777776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 62/396 (15%), Positives = 109/396 (27%), Gaps = 146/396 (36%)

Query: 5   LDKLRSK----VQSLITKVKGNNY-------------PTVDGISYLEAKHLLLLNYCQSI 47
              L SK    VQ  + +V   NY             P++    Y+E +   L N  Q  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVF 126

Query: 48  VYY--------------L--LRKAKGLSIEGHP----------VVQSLVEIRLFLEKI-- 79
             Y              L  LR AK + I+G            V  S         KI  
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 80  -----RPIDRKLQYQIQKLTSVRVGGNAIEPVNPSANESGEPQKTED-------LLKYRP 127
                      +   +QKL   ++  N     + S+N      +          LLK +P
Sbjct: 187 LNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN---IKLRIHSIQAELRRLLKSKP 242

Query: 128 NPDMLV-----------------SKTDMTTED-------GAGVYKPP--KFAPASMDEDK 161
             + L+                  K  +TT          A             ++  D+
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 162 TSRKERNALRKEKETL-RQA-------------------------------RQSTFMREL 189
                   L    + L R+                                + +T +   
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 190 VNDLEGRPEEVREV----------VGVESRELTRYKEMMEERARQEEELFTRAPLTKMEK 239
           +N LE  P E R++            + +  L+     + +    +  +     + K+ K
Sbjct: 363 LNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---SDVMVV----VNKLHK 413

Query: 240 KKM--KHLKKSRNGLLGLTESFYDEIKSLPIEEKDE 273
             +  K  K+S   +  +    Y E+K + +E +  
Sbjct: 414 YSLVEKQPKESTISIPSI----YLELK-VKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 40/177 (22%)

Query: 130 DMLVSKTDMTTEDGAGVYKPPKFAPASMDEDKTSRKERNALRKE--KETLRQARQSTFMR 187
           D    +     +D   V++   F   + D        ++ L KE     +      +   
Sbjct: 8   DFETGEHQYQYKDILSVFED-AFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 188 ELVNDLEGRPEEVREVVGVESRELTRYKEMME---ERARQ---EEELFTRA--------- 232
            L   L  + EE+ +   VE      YK +M       RQ      ++            
Sbjct: 66  RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 233 PLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKSLPIEEKDERP-TNVS-NGSRGMGK 287
              K    +++   K R  LL L                  RP  NV  +G  G GK
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL------------------RPAKNVLIDGVLGSGK 163

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 24/98 (24%)

Query: 168 NALRKEKETLRQARQSTFMRELVNDLEGRPEEVREVVGVESRELTRYKEMMEERARQEEE 227
           + L +E E++R+ R            E + + ++E+           ++   E+A+++ E
Sbjct: 78  DRLTQEPESIRKWR------------EEQRKRLQELDAASKVM----EQEWREKAKKDLE 121

Query: 228 LFTRAPLTKMEKKKMKHLKKSRNGLLGLTESFYDEIKS 265
            + +    ++EK K      +R       ++FY +  +
Sbjct: 122 EWNQRQSEQVEKNK----INNRI----ADKAFYQQPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00